LOCUS       NZ_MCAC01000000      2140623 bp    DNA     linear   BCT 22-APR-2025
DEFINITION  Neisseria meningitidis strain Nm56, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MCAC00000000
VERSION     NZ_MCAC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05437672
            Assembly: GCF_002148525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2140623)
  AUTHORS   Marin,M.A., Fonseca,E., Encinas,F., Freitas,F., Camargo,D.A.,
            Coimbra,R.S., de Filippis,I. and Vicente,A.C.
  TITLE     The invasive Neisseria meningitidis MenC CC103 from Brazil is
            characterized by an accessory gene repertoire
  JOURNAL   Sci Rep 7 (1), 1617 (2017)
   PUBMED   28487566
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140623)
  AUTHORS   Marin,M.A., Fonseca,E.L., Jannechevitz,F., Encinas,F., Camargo,D.,
            Coimbra,R.S. and Vicente,A.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2016) Laboratory of Molecular Genetics of
            Microorganisms, Oswaldo Cruz Institute, Avenida Brasil 4365, Rio de
            Janeiro, Rio de Janeiro 21040-360, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MCAC00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_MCAC00000000.  This version of the project
            (01) has the accession number NZ_MCAC01000000, and consists of
            sequences MCAC01000001-MCAC01000091.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: A5-miseq v. 20141120
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 161.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002148525.1-RS_2025_04_21
            Annotation Date                   :: 04/21/2025 09:25:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,195
            CDSs (total)                      :: 2,138
            Genes (coding)                    :: 1,924
            CDSs (with protein)               :: 1,924
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 214
            CDSs (without protein)            :: 214
            Pseudo Genes (ambiguous residues) :: 0 of 214
            Pseudo Genes (frameshifted)       :: 75 of 214
            Pseudo Genes (incomplete)         :: 153 of 214
            Pseudo Genes (internal stop)      :: 18 of 214
            Pseudo Genes (multiple problems)  :: 29 of 214
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140623
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="Nm56"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="Brazil: Minas Gerais, Betim"
                     /collection_date="2011-03"
                     /collected_by="Dhian Camargo"
WGS         MCAC01000001-MCAC01000091
WGS_SCAFLD  NZ_MCAC01000001-NZ_MCAC01000091
//
LOCUS       NZ_WBLW01000000      3915034 bp    DNA     linear   BCT 28-MAY-2025
DEFINITION  Vibrio cholerae strain 234_03, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WBLW00000000
VERSION     NZ_WBLW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12839199
            Assembly: GCF_015830025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3915034)
  AUTHORS   Sacchi,C.T., Goncalves,C.R. and Tiba-Casas,M.R.
  TITLE     Vibrio cholerae isolated in Brazil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3915034)
  AUTHORS   Sacchi,C.T., Goncalves,C.R. and Tiba-Casas,M.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-SEP-2019) Strategic Laboratory, Instituto Adolfo
            Lutz, Av. Dr. Arnaldo, 355, Sao Paulo, SP 01246902, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WBLW00000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_WBLW00000000.  This version of the project
            (01) has the accession number NZ_WBLW01000000, and consists of
            sequences WBLW01000001-WBLW01000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Ana Paula Silva Lemos,
            Instituto Adolfo Lutz.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-SEP-2019
            Assembly Method        :: SPAdes v. 5.10.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 57.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015830025.1-RS_2025_05_26
            Annotation Date                   :: 05/26/2025 11:01:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,550
            CDSs (total)                      :: 3,468
            Genes (coding)                    :: 3,303
            CDSs (with protein)               :: 3,303
            Genes (RNA)                       :: 82
            rRNAs                             :: 8, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 120 of 165
            Pseudo Genes (incomplete)         :: 41 of 165
            Pseudo Genes (internal stop)      :: 16 of 165
            Pseudo Genes (multiple problems)  :: 11 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3915034
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="234_03"
                     /isolation_source="Sewer"
                     /db_xref="taxon:666"
                     /geo_loc_name="Brazil:Sao Paulo, Santos"
                     /lat_lon="23.96 S 46.33 W"
                     /collection_date="2018"
                     /collected_by="CETESB"
WGS         WBLW01000001-WBLW01000082
WGS_SCAFLD  NZ_WBLW01000001-NZ_WBLW01000082
//
LOCUS       NZ_CWQT01000000      3795207 bp    DNA     linear   BCT 29-MAY-2025
DEFINITION  Vibrio cholerae strain 6214, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CWQT00000000
VERSION     NZ_CWQT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA889235
            Assembly: GCF_001248645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CWQT00000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_CWQT00000000.  This version of the project
            (01) has the accession number NZ_CWQT01000000, and consists of
            sequences CWQT01000001-CWQT01000127.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001248645.1-RS_2025_05_27
            Annotation Date                   :: 05/27/2025 13:32:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,839
            CDSs (total)                      :: 3,796
            Genes (coding)                    :: 3,509
            CDSs (with protein)               :: 3,509
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 287
            CDSs (without protein)            :: 287
            Pseudo Genes (ambiguous residues) :: 2 of 287
            Pseudo Genes (frameshifted)       :: 65 of 287
            Pseudo Genes (incomplete)         :: 221 of 287
            Pseudo Genes (internal stop)      :: 13 of 287
            Pseudo Genes (multiple problems)  :: 12 of 287
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795207
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="6214"
                     /serovar="Inaba"
                     /db_xref="taxon:666"
                     /geo_loc_name="Kenya:Kakuma"
                     /collection_date="2007"
WGS         CWQT01000001-CWQT01000127
WGS_SCAFLD  NZ_CWQT01000001-NZ_CWQT01000127
//
LOCUS       NZ_WBLX01000000      3973024 bp    DNA     linear   BCT 29-MAY-2025
DEFINITION  Vibrio cholerae strain 237_01, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WBLX00000000
VERSION     NZ_WBLX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12839210
            Assembly: GCF_015830035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 3973024)
  AUTHORS   Sacchi,C.T., Goncalves,C.R. and Tiba-Casas,M.R.
  TITLE     Vibrio cholerae isolated in Brazil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3973024)
  AUTHORS   Sacchi,C.T., Goncalves,C.R. and Tiba-Casas,M.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-SEP-2019) Strategic Laboratory, Instituto Adolfo
            Lutz, Av. Dr. Arnaldo, 355, Sao Paulo, SP 01246902, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WBLX00000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_WBLX00000000.  This version of the project
            (01) has the accession number NZ_WBLX01000000, and consists of
            sequences WBLX01000001-WBLX01000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Monique Ribeiro Tiba-Casas,
            Instituto Adolfo Lutz.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-SEP-2019
            Assembly Method        :: SPAdes v. 5.10.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015830035.1-RS_2025_05_27
            Annotation Date                   :: 05/27/2025 13:54:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,643
            CDSs (total)                      :: 3,567
            Genes (coding)                    :: 3,384
            CDSs (with protein)               :: 3,384
            Genes (RNA)                       :: 76
            rRNAs                             :: 8, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 133 of 183
            Pseudo Genes (incomplete)         :: 47 of 183
            Pseudo Genes (internal stop)      :: 14 of 183
            Pseudo Genes (multiple problems)  :: 10 of 183
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3973024
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="237_01"
                     /isolation_source="Sewer"
                     /db_xref="taxon:666"
                     /geo_loc_name="Brazil:Sao Paulo, Sao Paulo"
                     /lat_lon="23.55 S 46.63 W"
                     /collection_date="2018"
                     /collected_by="CETESB"
WGS         WBLX01000001-WBLX01000073
WGS_SCAFLD  NZ_WBLX01000001-NZ_WBLX01000073
//
LOCUS       NZ_LYMG01000000      4566266 bp    DNA     linear   BCT 19-JUL-2025
DEFINITION  Yersinia pestis strain M-1773, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LYMG00000000
VERSION     NZ_LYMG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05017702
            Assembly: GCF_003085855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4566266)
  AUTHORS   Kutyrev,V.V., Eroshenko,G.A., Motin,V.L., Nosov,N.Y., Krasnov,J.M.,
            Kukleva,L.M., Nikiforov,K.A., Al'khova,Z.V., Oglodin,E.G. and
            Guseva,N.P.
  TITLE     Phylogeny and Classification of Yersinia pestis Through the Lens of
            Strains From the Plague Foci of Commonwealth of Independent States
  JOURNAL   Front Microbiol 9, 1106 (2018)
   PUBMED   29887859
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4566266)
  AUTHORS   Krasnov,Y., Nosov,N., Eroshenko,G., Nikiforov,K., Koukleva,L. and
            Kutyrev,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2016) Microbiology, Russian Research Anti-Plague
            Institute 'Microbe', Universitetskaya 46, Saratov 410005, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LYMG00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_LYMG00000000.  This version of the project
            (01) has the accession number NZ_LYMG01000000, and consists of
            sequences LYMG01000001-LYMG01000284.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-SEP-2013
            Assembly Method        :: Newbler v. 2.6
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 48.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003085855.1-RS_2025_07_18
            Annotation Date                   :: 07/18/2025 09:19:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,194
            CDSs (total)                      :: 4,118
            Genes (coding)                    :: 3,760
            CDSs (with protein)               :: 3,760
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 61
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 358
            CDSs (without protein)            :: 358
            Pseudo Genes (ambiguous residues) :: 0 of 358
            Pseudo Genes (frameshifted)       :: 255 of 358
            Pseudo Genes (incomplete)         :: 117 of 358
            Pseudo Genes (internal stop)      :: 22 of 358
            Pseudo Genes (multiple problems)  :: 31 of 358
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4566266
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="M-1773"
                     /host="Meriones meridianus"
                     /db_xref="taxon:632"
                     /geo_loc_name="Russia: Astrakhan Region, Krasnoyarsk
                     District"
                     /lat_lon="46.585543 N 48.44837899 E"
                     /collection_date="2002-05-17"
                     /collected_by="Russian Research Anti-Plague Institute
                     'Microbe'"
WGS         LYMG01000001-LYMG01000284
WGS_SCAFLD  NZ_LYMG01000001-NZ_LYMG01000284
//
LOCUS       NZ_JARRYU010000000   2580364 bp    DNA     linear   BCT 02-MAR-2026
DEFINITION  Enterococcus faecium strain F1729, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JARRYU000000000
VERSION     NZ_JARRYU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33901067
            Assembly: GCF_029624515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2580364)
  AUTHORS   Rebelo,A., Novais,C., Antunes,P., Freitas,A.R. and Peixe,L.
  TITLE     Assessing the Potential Role of Copper in Selecting
            Multidrug-Resistant Enterococcus in Poultry Production:
            Implications for One Health
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2580364)
  AUTHORS   Rebelo,A., Novais,C., Antunes,P., Freitas,A.R. and Peixe,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2023) Biological Sciences, Laboratory of
            Microbiology, Faculty of Pharmacy, University of Porto, R. Jorge de
            Viterbo Ferreira 228, Porto 4050-313, Portugal
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARRYU000000000.1.
            The Enterococcus faecium whole genome shotgun (WGS) project has the
            project accession NZ_JARRYU000000000.  This version of the project
            (01) has the accession number NZ_JARRYU010000000, and consists of
            sequences JARRYU010000001-JARRYU010000247.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-FEB-2023
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029624515.1-RS_2026_02_09
            Annotation Date                   :: 02/09/2026 11:44:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,661
            CDSs (total)                      :: 2,585
            Genes (coding)                    :: 2,324
            CDSs (with protein)               :: 2,324
            Genes (RNA)                       :: 76
            rRNAs                             :: 4, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 1, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 261
            CDSs (without protein)            :: 261
            Pseudo Genes (ambiguous residues) :: 0 of 261
            Pseudo Genes (frameshifted)       :: 54 of 261
            Pseudo Genes (incomplete)         :: 199 of 261
            Pseudo Genes (internal stop)      :: 32 of 261
            Pseudo Genes (multiple problems)  :: 19 of 261
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580364
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /strain="F1729"
                     /isolation_source="feces"
                     /host="chicken"
                     /db_xref="taxon:1352"
                     /geo_loc_name="Portugal: North and Centre"
                     /lat_lon="39.3999 N 8.2245 W"
                     /collection_date="2019-12"
                     /collected_by="Faculty of Pharmacy, University of Porto"
WGS         JARRYU010000001-JARRYU010000247
WGS_SCAFLD  NZ_JARRYU010000001-NZ_JARRYU010000247
//
LOCUS       NZ_CEWCBT010000000   3248220 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola barnesiae isolate DRR171828_bin_20339, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWCBT000000000
VERSION     NZ_CEWCBT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091042
            Sequence Read Archive: DRR171828
            Assembly: GCF_982429485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola barnesiae (human gut metagenome)
  ORGANISM  Phocaeicola barnesiae
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3248220)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCBT000000000.1.
            The Phocaeicola barnesiae whole genome shotgun (WGS) project has
            the project accession NZ_CEWCBT000000000.  This version of the
            project (01) has the accession number NZ_CEWCBT010000000, and
            consists of sequences CEWCBT010000001-CEWCBT010000104.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171828.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982429485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:29:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,626
            CDSs (total)                      :: 2,583
            Genes (coding)                    :: 2,531
            CDSs (with protein)               :: 2,531
            Genes (RNA)                       :: 43
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 40
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 10 of 52
            Pseudo Genes (incomplete)         :: 44 of 52
            Pseudo Genes (internal stop)      :: 8 of 52
            Pseudo Genes (multiple problems)  :: 10 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3248220
                     /organism="Phocaeicola barnesiae"
                     /mol_type="genomic DNA"
                     /isolate="DRR171828_bin_20339"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:376804"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCBT010000001-CEWCBT010000104
WGS_SCAFLD  NZ_CEWCBT010000001-NZ_CEWCBT010000104
//
LOCUS       NZ_CEWCFI010000000   3142683 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola coprophilus isolate DRR171823_bin_15879, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWCFI000000000
VERSION     NZ_CEWCFI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090998
            Sequence Read Archive: DRR171823
            Assembly: GCF_982430415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola coprophilus (human gut metagenome)
  ORGANISM  Phocaeicola coprophilus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3142683)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCFI000000000.1.
            The Phocaeicola coprophilus whole genome shotgun (WGS) project has
            the project accession NZ_CEWCFI000000000.  This version of the
            project (01) has the accession number NZ_CEWCFI010000000, and
            consists of sequences CEWCFI010000001-CEWCFI010000090.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171823.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982430415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:29:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,576
            Genes (coding)                    :: 2,533
            CDSs (with protein)               :: 2,533
            Genes (RNA)                       :: 37
            tRNAs                             :: 35
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 13 of 43
            Pseudo Genes (incomplete)         :: 30 of 43
            Pseudo Genes (internal stop)      :: 12 of 43
            Pseudo Genes (multiple problems)  :: 9 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3142683
                     /organism="Phocaeicola coprophilus"
                     /mol_type="genomic DNA"
                     /isolate="DRR171823_bin_15879"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:387090"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCFI010000001-CEWCFI010000090
WGS_SCAFLD  NZ_CEWCFI010000001-NZ_CEWCFI010000090
//
LOCUS       NZ_CEVZFZ010000000   3963765 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171599_bin_7628, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZFZ000000000
VERSION     NZ_CEVZFZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089220
            Sequence Read Archive: DRR171599
            Assembly: GCF_982410415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3963765)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZFZ000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEVZFZ000000000.  This version of the project
            (01) has the accession number NZ_CEVZFZ010000000, and consists of
            sequences CEVZFZ010000001-CEVZFZ010000185.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171599.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982410415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:35:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,468
            CDSs (total)                      :: 3,417
            Genes (coding)                    :: 3,310
            CDSs (with protein)               :: 3,310
            Genes (RNA)                       :: 51
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 27 of 107
            Pseudo Genes (incomplete)         :: 86 of 107
            Pseudo Genes (internal stop)      :: 14 of 107
            Pseudo Genes (multiple problems)  :: 15 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3963765
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171599_bin_7628"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZFZ010000001-CEVZFZ010000185
WGS_SCAFLD  NZ_CEVZFZ010000001-NZ_CEVZFZ010000185
//
LOCUS       NZ_JQAQ01000000      1928515 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pediococcus acidilactici strain AS1.2696, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQAQ00000000
VERSION     NZ_JQAQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02797809
            Assembly: GCF_001436795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pediococcus acidilactici
  ORGANISM  Pediococcus acidilactici
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Pediococcus; Pediococcus acidilactici group.
REFERENCE   1  (bases 1 to 1928515)
  AUTHORS   Sun,Z., Harris,H.M., McCann,A., Guo,C., Argimon,S., Zhang,W.,
            Yang,X., Jeffery,I.B., Cooney,J.C., Kagawa,T.F., Liu,W., Song,Y.,
            Salvetti,E., Wrobel,A., Rasinkangas,P., Parkhill,J., Rea,M.C.,
            O'Sullivan,O., Ritari,J., Douillard,F.P., Paul Ross,R., Yang,R.,
            Briner,A.E., Felis,G.E., de Vos,W.M., Barrangou,R.,
            Klaenhammer,T.R., Caufield,P.W., Cui,Y., Zhang,H. and O'Toole,P.W.
  TITLE     Expanding the biotechnology potential of lactobacilli through
            comparative genomics of 213 strains and associated genera
  JOURNAL   Nat Commun 6, 8322 (2015)
   PUBMED   26415554
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928515)
  AUTHORS   Sun,Z., Harris,H.M., Argimon,S., Zhang,W., McCann,A., Jeffery,I.B.,
            Yang,X., Guo,C., Liu,W., Song,Y., Yang,R., Cui,Y., Zhang,H. and
            O'Toole,P.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2014) Inner Mongolia Agricultural University, Key
            Laboratory of Dairy Biotechnology and Engineering, Education
            Ministry of China, Zhaowuda Road, No. 306, Hohhot, Inner Mongolia
            010018, The People's Republic of China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQAQ00000000.1.
            The Pediococcus acidilactici whole genome shotgun (WGS) project has
            the project accession NZ_JQAQ00000000.  This version of the project
            (01) has the accession number NZ_JQAQ01000000, and consists of
            sequences JQAQ01000001-JQAQ01000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2
            Genome Coverage       :: 100x
            Sequencing Technology :: Illumina MiSeq; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001436795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:26:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,867
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,796
            CDSs (with protein)               :: 1,796
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 4 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928515
                     /organism="Pediococcus acidilactici"
                     /mol_type="genomic DNA"
                     /strain="AS1.2696"
                     /db_xref="taxon:1254"
                     /collection_date="1887"
WGS         JQAQ01000001-JQAQ01000018
WGS_SCAFLD  NZ_JQAQ01000001-NZ_JQAQ01000018
//
LOCUS       NZ_CEVXVN010000000   2234217 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Porphyromonas sp. isolate DRR127700_bin_228, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVXVN000000000
VERSION     NZ_CEVXVN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122087963
            Sequence Read Archive: DRR127700
            Assembly: GCF_982400835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Porphyromonas sp. (human gut metagenome)
  ORGANISM  Porphyromonas sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Porphyromonadaceae; Porphyromonas.
REFERENCE   1  (bases 1 to 2234217)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVXVN000000000.1.
            The Porphyromonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVXVN000000000.  This version of the project
            (01) has the accession number NZ_CEVXVN010000000, and consists of
            sequences CEVXVN010000001-CEVXVN010000058.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR127700.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982400835.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:19:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,754
            CDSs (total)                      :: 1,709
            Genes (coding)                    :: 1,685
            CDSs (with protein)               :: 1,685
            Genes (RNA)                       :: 45
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 2 of 24
            Pseudo Genes (incomplete)         :: 22 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234217
                     /organism="Porphyromonas sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR127700_bin_228"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1924944"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVXVN010000001-CEVXVN010000058
WGS_SCAFLD  NZ_CEVXVN010000001-NZ_CEVXVN010000058
//
LOCUS       NZ_JUJF01000000      4836523 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain S2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUJF00000000
VERSION     NZ_JUJF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03252599
            Assembly: GCF_000808375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4836523)
  AUTHORS   Xie,H. and Ma,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2014) Beijing Agro-Biotechnology Research Center,
            Beijing Academy of Agriculture and Forestry Sciences, No. 9 Shu
            Guang Hua Yuan Middle Road, Hai Dian District, Beijing, Beijing
            100097, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUJF00000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JUJF00000000.  This version of the
            project (01) has the accession number NZ_JUJF01000000, and consists
            of sequences JUJF01000001-JUJF01000037.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.01
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000808375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:26:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,448
            CDSs (total)                      :: 4,356
            Genes (coding)                    :: 4,278
            CDSs (with protein)               :: 4,278
            Genes (RNA)                       :: 92
            rRNAs                             :: 8, 5, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 5, 8 (16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 21 of 78
            Pseudo Genes (incomplete)         :: 68 of 78
            Pseudo Genes (internal stop)      :: 10 of 78
            Pseudo Genes (multiple problems)  :: 17 of 78
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4836523
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="S2"
                     /isolation_source="infected leaves"
                     /host="Brassica rapa ssp. pekinensis (Chinese cabbage)"
                     /sub_species="brasiliense"
                     /db_xref="taxon:180957"
                     /geo_loc_name="China: Beijing"
                     /collection_date="2007-05"
WGS         JUJF01000001-JUJF01000037
WGS_SCAFLD  NZ_JUJF01000001-NZ_JUJF01000037
//
LOCUS       NZ_CEVXSN010000000   2203346 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Porphyromonas sp. isolate DRR127767_bin_23, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVXSN000000000
VERSION     NZ_CEVXSN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088108
            Sequence Read Archive: DRR127767
            Assembly: GCF_982400015.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Porphyromonas sp. (human gut metagenome)
  ORGANISM  Porphyromonas sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Porphyromonadaceae; Porphyromonas.
REFERENCE   1  (bases 1 to 2203346)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVXSN000000000.1.
            The Porphyromonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVXSN000000000.  This version of the project
            (01) has the accession number NZ_CEVXSN010000000, and consists of
            sequences CEVXSN010000001-CEVXSN010000117.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR127767.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982400015.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:21:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,763
            CDSs (total)                      :: 1,718
            Genes (coding)                    :: 1,692
            CDSs (with protein)               :: 1,692
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 3 of 26
            Pseudo Genes (incomplete)         :: 22 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203346
                     /organism="Porphyromonas sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR127767_bin_23"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1924944"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVXSN010000001-CEVXSN010000117
WGS_SCAFLD  NZ_CEVXSN010000001-NZ_CEVXSN010000117
//
LOCUS       NZ_JBWDLF010000000   6470989 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas lactis strain OYA S35, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWDLF000000000
VERSION     NZ_JBWDLF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56510768
            Assembly: GCF_056749145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas lactis
  ORGANISM  Pseudomonas lactis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6470989)
  AUTHORS   Oyawoye,O.M., Afolabi,S.B., Ajibade,O.A., Abiona,O.T., Ojo,P.A.,
            Adesina,K.S., Falae,C.O., Dickson,F.C., Ogunbewon,D.A.,
            Okuntilu,R.K. and Olukanmi,M.D.
  TITLE     Genomic exploration of Pseudomonas fluorescens str. OYA S35: innate
            traits underpinning plant growth promotion
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6470989)
  AUTHORS   Oyawoye,O.M., Afolabi,S.B., Ajibade,O.A., Abiona,O.T., Ojo,P.A.,
            Adesina,K.S., Falae,C.O., Dickson,F.C., Ogunbewon,D.A.,
            Okuntilu,R.K. and Olukanmi,M.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2026) Microbiology, Federal University,
            Oye-Ekiti, 42, Bojuri street, Adebayo, Ado, Ekiti 360101, Nigeria
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWDLF000000000.1.
            The Pseudomonas lactis whole genome shotgun (WGS) project has the
            project accession NZ_JBWDLF000000000.  This version of the project
            (01) has the accession number NZ_JBWDLF010000000, and consists of
            sequences JBWDLF010000001-JBWDLF010000111.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Prof. O. M. Oyawoye
            Microbiology Laboratory, Federal University Oye-Ekiti, Nigeria.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-MAY-2025
            Assembly Method        :: Unicycler v. v0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 102.1x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056749145.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 02:18:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,016
            CDSs (total)                      :: 5,942
            Genes (coding)                    :: 5,856
            CDSs (with protein)               :: 5,856
            Genes (RNA)                       :: 74
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 61
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 20 of 86
            Pseudo Genes (incomplete)         :: 75 of 86
            Pseudo Genes (internal stop)      :: 4 of 86
            Pseudo Genes (multiple problems)  :: 11 of 86
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6470989
                     /organism="Pseudomonas lactis"
                     /mol_type="genomic DNA"
                     /strain="OYA S35"
                     /isolation_source="Unpolluted rhizosphere soil of pepper
                     (Capsicum annuum)"
                     /db_xref="taxon:1615674"
                     /geo_loc_name="Nigeria: Ekiti state, Oye-Ekiti"
                     /lat_lon="7.776695 N 5.312083 E"
                     /collection_date="2024-05-20"
WGS         JBWDLF010000001-JBWDLF010000111
WGS_SCAFLD  NZ_JBWDLF010000001-NZ_JBWDLF010000111
//
LOCUS       NZ_QFYP01000000      3841079 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phenylobacterium hankyongense strain HKS-05, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QFYP00000000
VERSION     NZ_QFYP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09212595
            Assembly: GCF_003254505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phenylobacterium hankyongense
  ORGANISM  Phenylobacterium hankyongense
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Caulobacterales; Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3841079)
  AUTHORS   Li,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2018) State Key Laboratory of Agricutrual
            Microbiology, Huazhong Agricultural University, Shizishan, Wuhan,
            Hubei 430070, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QFYP00000000.1.
            The Phenylobacterium hankyongense whole genome shotgun (WGS)
            project has the project accession NZ_QFYP00000000.  This version of
            the project (01) has the accession number NZ_QFYP01000000, and
            consists of sequences QFYP01000001-QFYP01000041.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 308x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003254505.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:12:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,769
            CDSs (total)                      :: 3,718
            Genes (coding)                    :: 3,701
            CDSs (with protein)               :: 3,701
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 1 of 17
            Pseudo Genes (incomplete)         :: 15 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3841079
                     /organism="Phenylobacterium hankyongense"
                     /mol_type="genomic DNA"
                     /strain="HKS-05"
                     /isolation_source="ginseng field soil"
                     /type_material="type strain of Phenylobacterium
                     hankyongense"
                     /db_xref="taxon:1813876"
                     /geo_loc_name="South Korea: ginseng field soil"
                     /collection_date="2017-11"
WGS         QFYP01000001-QFYP01000041
WGS_SCAFLD  NZ_QFYP01000001-NZ_QFYP01000041
//
LOCUS       NZ_AEAD01000000      5960467 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas amygdali pv. aesculi str. 0893_23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AEAD00000000
VERSION     NZ_AEAD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471319
            Assembly: GCF_000145685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas amygdali pv. aesculi str. 0893_23 (Pseudomonas syringae
            pv. aesculi str. 0893_23)
  ORGANISM  Pseudomonas amygdali pv. aesculi str. 0893_23
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas
            amygdali.
REFERENCE   1  (bases 1 to 5960467)
  AUTHORS   Baltrus,D.A., Nishimura,M.T., Romanchuk,A., Chang,J.H.,
            Mukhtar,M.S., Cherkis,K., Roach,J., Grant,S.R., Jones,C.D. and
            Dangl,J.L.
  TITLE     Dynamic evolution of pathogenicity revealed by sequencing and
            comparative genomics of 19 Pseudomonas syringae isolates
  JOURNAL   PLoS Pathog 7 (7), e1002132 (2011)
   PUBMED   21799664
REFERENCE   2  (bases 1 to 5960467)
  AUTHORS   Baltrus,D.A. and Dangl,J.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2011) Biology, UNC Chapel Hill, Coker Hall,
            Chapel Hill, NC 27510, USA
REFERENCE   3  (bases 1 to 5960467)
  AUTHORS   Baltrus,D.A., Nishimura,M.T., Romanchuk,A., Chang,J.H., Mukhtar,S.,
            Jones,C.D. and Dangl,J.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUN-2010) Biology, UNC Chapel Hill, Coker Hall,
            Chapel Hill, NC 27510, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEAD00000000.1.
            The Pseudomonas amygdali pv. aesculi str. 0893_23 whole genome
            shotgun (WGS) project has the project accession NZ_AEAD00000000.
            This version of the project (01) has the accession number
            NZ_AEAD01000000, and consists of sequences
            AEAD01000001-AEAD01000915.
            DNA Source: Jeff Dangl (University of North Carolina at Chapel
            Hill).
            Annotation was added by the NCBI Prokaryotic Genomes Automatic
            Annotation Pipeline Group. Information about the Pipeline can be
            found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be
            aware that the annotation is done automatically with little or no
            manual curation.
            Annotation was added to the contigs in April 2011.
            
            ##Genome-Assembly-Data-START##
            Genome Coverage       :: 20x
            Sequencing Technology :: 454; Solexa
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000145685.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:40:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,752
            CDSs (total)                      :: 5,709
            Genes (coding)                    :: 5,282
            CDSs (with protein)               :: 5,282
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 427
            CDSs (without protein)            :: 427
            Pseudo Genes (ambiguous residues) :: 0 of 427
            Pseudo Genes (frameshifted)       :: 154 of 427
            Pseudo Genes (incomplete)         :: 278 of 427
            Pseudo Genes (internal stop)      :: 38 of 427
            Pseudo Genes (multiple problems)  :: 39 of 427
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5960467
                     /organism="Pseudomonas amygdali pv. aesculi str. 0893_23"
                     /mol_type="genomic DNA"
                     /strain="0893_23"
                     /db_xref="taxon:629258"
                     /pathovar="aesculi"
WGS         AEAD01000001-AEAD01000915
WGS_SCAFLD  NZ_AEAD01000421
WGS_SCAFLD  NZ_AEAD01000434
WGS_SCAFLD  NZ_AEAD01000461-NZ_AEAD01000462
WGS_SCAFLD  NZ_AEAD01000470
WGS_SCAFLD  NZ_AEAD01000473-NZ_AEAD01000475
WGS_SCAFLD  NZ_AEAD01000482-NZ_AEAD01000483
WGS_SCAFLD  NZ_AEAD01000492
WGS_SCAFLD  NZ_AEAD01000498
WGS_SCAFLD  NZ_AEAD01000501-NZ_AEAD01000502
WGS_SCAFLD  NZ_AEAD01000507-NZ_AEAD01000508
WGS_SCAFLD  NZ_AEAD01000515-NZ_AEAD01000517
WGS_SCAFLD  NZ_AEAD01000520-NZ_AEAD01000522
WGS_SCAFLD  NZ_AEAD01000525-NZ_AEAD01000533
WGS_SCAFLD  NZ_AEAD01000536-NZ_AEAD01000876
WGS_SCAFLD  NZ_AEAD01000915
WGS_SCAFLD  NZ_GL384620-NZ_GL384709
//
LOCUS       NZ_QNGC01000000      2008379 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pediococcus acidilactici strain GS1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QNGC00000000
VERSION     NZ_QNGC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09531784
            Assembly: GCF_003571945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pediococcus acidilactici
  ORGANISM  Pediococcus acidilactici
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Pediococcus; Pediococcus acidilactici group.
REFERENCE   1  (bases 1 to 2008379)
  AUTHORS   Jin,G.-D. and Kim,E.B.
  TITLE     Draft genome of pediococcus acidilactici GS1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2008379)
  AUTHORS   Jin,G.-D. and Kim,E.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2018) Department of Animal Life Science, Kangwon
            Natl. Univ., 1 Gangwondaehakgil, Chuncheon, Gangwon-do 24341, South
            Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QNGC00000000.1.
            The Pediococcus acidilactici whole genome shotgun (WGS) project has
            the project accession NZ_QNGC00000000.  This version of the project
            (01) has the accession number NZ_QNGC01000000, and consists of
            sequences QNGC01000001-QNGC01000030.
            Bacteria and source DNA available from Eun Bae Kim.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 28-FEB-2014
            Assembly Method        :: Ray v. 1.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 120.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003571945.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:21:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,976
            CDSs (total)                      :: 1,906
            Genes (coding)                    :: 1,874
            CDSs (with protein)               :: 1,874
            Genes (RNA)                       :: 70
            rRNAs                             :: 4, 6, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 6, 7 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 7 of 32
            Pseudo Genes (incomplete)         :: 12 of 32
            Pseudo Genes (internal stop)      :: 14 of 32
            Pseudo Genes (multiple problems)  :: 1 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008379
                     /organism="Pediococcus acidilactici"
                     /mol_type="genomic DNA"
                     /strain="GS1"
                     /isolation_source="feces"
                     /host="chicken"
                     /db_xref="taxon:1254"
                     /geo_loc_name="South Korea"
                     /collection_date="2014-06-30"
WGS         QNGC01000001-QNGC01000030
WGS_SCAFLD  NZ_QNGC01000001-NZ_QNGC01000030
//
LOCUS       NZ_LILI01000000      6231443 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas amygdali pv. aesculi strain 2306, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LILI00000000
VERSION     NZ_LILI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03991891
            Assembly: GCF_001537985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas amygdali pv. aesculi (Pseudomonas syringae pv. aesculi)
  ORGANISM  Pseudomonas amygdali pv. aesculi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas
            amygdali.
REFERENCE   1  (bases 1 to 6231443)
  AUTHORS   Nowell,R.W., Laue,B.E., Sharp,P.M. and Green,S.
  TITLE     Comparative genomics reveals genes significantly associated with
            woody hosts in the plant pathogen Pseudomonas syringae
  JOURNAL   Mol Plant Pathol 17 (9), 1409-1424 (2016)
   PUBMED   27145446
REFERENCE   2  (bases 1 to 6231443)
  AUTHORS   Nowell,R.W., Green,S., Laue,B.E. and Sharp,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2015) Institute of Evolutionary Biology,
            University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9
            3FL, United Kingdom (Great Britain)
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LILI00000000.1.
            The Pseudomonas amygdali pv. aesculi whole genome shotgun (WGS)
            project has the project accession NZ_LILI00000000.  This version of
            the project (01) has the accession number NZ_LILI01000000, and
            consists of sequences LILI01000001-LILI01000286.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2013
            Assembly Method        :: SPAdes v. 2.4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 120.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001537985.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:02:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,944
            CDSs (total)                      :: 5,874
            Genes (coding)                    :: 5,364
            CDSs (with protein)               :: 5,364
            Genes (RNA)                       :: 70
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 510
            CDSs (without protein)            :: 510
            Pseudo Genes (ambiguous residues) :: 0 of 510
            Pseudo Genes (frameshifted)       :: 138 of 510
            Pseudo Genes (incomplete)         :: 377 of 510
            Pseudo Genes (internal stop)      :: 47 of 510
            Pseudo Genes (multiple problems)  :: 46 of 510
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6231443
                     /organism="Pseudomonas amygdali pv. aesculi"
                     /mol_type="genomic DNA"
                     /strain="2306"
                     /isolation_source="Plant material"
                     /host="Aesculus hippocastanum"
                     /db_xref="taxon:251722"
                     /geo_loc_name="Belgium"
                     /collection_date="2010"
                     /pathovar="aesculi"
WGS         LILI01000001-LILI01000286
WGS_SCAFLD  NZ_LILI01000001-NZ_LILI01000286
//
LOCUS       NZ_QRKW01000000      4997296 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain AM14-27, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QRKW00000000
VERSION     NZ_QRKW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09734809
            Assembly: GCF_003472125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 4997296)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     A genome reference for cultivated species of the human gut
            microbiota
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4997296)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2018) BGI-CNGB, BGI, No. 11, Beishan IZ., Yantian
            Dist., Shenzhen, Guangdong 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QRKW00000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_QRKW00000000.  This version of the project
            (01) has the accession number NZ_QRKW01000000, and consists of
            sequences QRKW01000001-QRKW01000124.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina Hiseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003472125.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:38:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,190
            CDSs (total)                      :: 4,108
            Genes (coding)                    :: 3,979
            CDSs (with protein)               :: 3,979
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 77
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 38 of 129
            Pseudo Genes (incomplete)         :: 99 of 129
            Pseudo Genes (internal stop)      :: 13 of 129
            Pseudo Genes (multiple problems)  :: 17 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4997296
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="AM14-27"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China: Shenzhen"
                     /collection_date="2013-08-01"
WGS         QRKW01000001-QRKW01000124
WGS_SCAFLD  NZ_QRKW01000001-NZ_QRKW01000124
//
LOCUS       NZ_LIIC01000000      6263605 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas savastanoi pv. fraxini strain CFBP 5062, whole genome
            shotgun sequencing project.
ACCESSION   NZ_LIIC00000000
VERSION     NZ_LIIC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03992201
            Assembly: GCF_001538155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas savastanoi pv. fraxini
  ORGANISM  Pseudomonas savastanoi pv. fraxini
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6263605)
  AUTHORS   Nowell,R.W., Laue,B.E., Sharp,P.M. and Green,S.
  TITLE     Comparative genomics reveals genes significantly associated with
            woody hosts in the plant pathogen Pseudomonas syringae
  JOURNAL   Mol Plant Pathol 17 (9), 1409-1424 (2016)
   PUBMED   27145446
REFERENCE   2  (bases 1 to 6263605)
  AUTHORS   Nowell,R.W., Green,S., Laue,B.E. and Sharp,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2015) Institute of Evolutionary Biology,
            University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9
            3FL, United Kingdom (Great Britain)
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LIIC00000000.1.
            The Pseudomonas savastanoi pv. fraxini whole genome shotgun (WGS)
            project has the project accession NZ_LIIC00000000.  This version of
            the project (01) has the accession number NZ_LIIC01000000, and
            consists of sequences LIIC01000001-LIIC01000330.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2014
            Assembly Method        :: SPAdes v. 2.4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 78.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001538155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:08:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,080
            CDSs (total)                      :: 6,013
            Genes (coding)                    :: 5,509
            CDSs (with protein)               :: 5,509
            Genes (RNA)                       :: 67
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 504
            CDSs (without protein)            :: 504
            Pseudo Genes (ambiguous residues) :: 0 of 504
            Pseudo Genes (frameshifted)       :: 152 of 504
            Pseudo Genes (incomplete)         :: 354 of 504
            Pseudo Genes (internal stop)      :: 42 of 504
            Pseudo Genes (multiple problems)  :: 37 of 504
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6263605
                     /organism="Pseudomonas savastanoi pv. fraxini"
                     /mol_type="genomic DNA"
                     /strain="CFBP 5062"
                     /isolation_source="Plant material"
                     /host="Fraxinus excelsior"
                     /culture_collection="CFBP:5062"
                     /type_material="pathotype strain of Pseudomonas savastanoi
                     pv. fraxini"
                     /db_xref="taxon:360922"
                     /geo_loc_name="Netherlands"
                     /collection_date="1978"
                     /pathovar="fraxini"
WGS         LIIC01000001-LIIC01000330
WGS_SCAFLD  NZ_LIIC01000001-NZ_LIIC01000330
//
LOCUS       NZ_QSVC01000000      5008477 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain OM03-13AC, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QSVC00000000
VERSION     NZ_QSVC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09736768
            Assembly: GCF_003439275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5008477)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     A genome reference for cultivated species of the human gut
            microbiota
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5008477)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2018) BGI-CNGB, BGI, No. 11, Beishan IZ., Yantian
            Dist., Shenzhen, Guangdong 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QSVC00000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_QSVC00000000.  This version of the project
            (01) has the accession number NZ_QSVC01000000, and consists of
            sequences QSVC01000001-QSVC01000141.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina Hiseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003439275.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:41:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,245
            CDSs (total)                      :: 4,171
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 74
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 39 of 132
            Pseudo Genes (incomplete)         :: 97 of 132
            Pseudo Genes (internal stop)      :: 21 of 132
            Pseudo Genes (multiple problems)  :: 19 of 132
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5008477
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="OM03-13AC"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China: Shenzhen"
                     /collection_date="2013-12-01"
WGS         QSVC01000001-QSVC01000141
WGS_SCAFLD  NZ_QSVC01000001-NZ_QSVC01000141
//
LOCUS       NZ_RMBT01000000      5101007 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium versatile strain CFBP5663, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RMBT00000000
VERSION     NZ_RMBT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10417480
            Assembly: GCF_004296765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium versatile
  ORGANISM  Pectobacterium versatile
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5101007)
  AUTHORS   Portier,P., Pedron,J., Taghouti,G., Fischer-Le Saux,M.,
            Caullireau,E., Bertrand,C., Laurent,A., Chawki,K., Oulgazi,S.,
            Moumni,M., Andrivon,D., Dutrieux,C., Faure,D., Helias,V. and
            Barny,M.A.
  TITLE     Elevation of Pectobacterium carotovorum subsp. odoriferum to
            species level as Pectobacterium odoriferum sp. nov., proposal of
            Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae
            sp. nov., emended description of Pectobacterium carotovorum and
            description of Pectobacterium versatile sp. nov., isolated from
            streams and symptoms on diverse plants
  JOURNAL   Int J Syst Evol Microbiol 69 (10), 3207-3216 (2019)
   PUBMED   31343401
REFERENCE   2  (bases 1 to 5101007)
  AUTHORS   Pedron,J., Barny,M.A. and Portier,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-NOV-2018) Institute of Environmental and Ecological
            Sciences of Paris, Sorbonne University, 4 Place Jussieu, Paris
            75005, France, Metropolitan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RMBT00000000.1.
            The Pectobacterium versatile whole genome shotgun (WGS) project has
            the project accession NZ_RMBT00000000.  This version of the project
            (01) has the accession number NZ_RMBT01000000, and consists of
            sequences RMBT01000001-RMBT01000053.
            Bacteria and source DNA available from CIRM-CFBP, IRHS-INRA,
            France.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 10-OCT-2018
            Assembly Method        :: CLC NGS Cell v. 9.5.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 132.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004296765.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:23:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,582
            CDSs (total)                      :: 4,522
            Genes (coding)                    :: 4,427
            CDSs (with protein)               :: 4,427
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 36 of 95
            Pseudo Genes (incomplete)         :: 57 of 95
            Pseudo Genes (internal stop)      :: 21 of 95
            Pseudo Genes (multiple problems)  :: 16 of 95
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5101007
                     /organism="Pectobacterium versatile"
                     /mol_type="genomic DNA"
                     /strain="CFBP5663"
                     /host="Iris sp."
                     /db_xref="taxon:2488639"
                     /geo_loc_name="France: Rhone-Alpes"
                     /collection_date="1983"
                     /collected_by="Shmit J"
WGS         RMBT01000001-RMBT01000053
WGS_SCAFLD  NZ_RMBT01000001-NZ_RMBT01000053
//
LOCUS       NZ_SPHD01000000      5254542 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain 1001175st1_C6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SPHD00000000
VERSION     NZ_SPHD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10863238
            Assembly: GCF_005844725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5254542)
  AUTHORS   Yang,C., Faith,J. and Aggarwala,V.
  TITLE     Strain-level differences in gut microbiome composition determine
            fecal IgA levels and are modifiable by gut microbiota manipulation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5254542)
  AUTHORS   Yang,C., Faith,J. and Aggarwala,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Genetics and Genomic Sciences, Icahn School
            of Medicine at Mount Sinai, 1470 Madison Ave, New York, NY 10029,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SPHD00000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_SPHD00000000.  This version of the project
            (01) has the accession number NZ_SPHD01000000, and consists of
            sequences SPHD01000001-SPHD01000100.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35.1779195415x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005844725.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:51:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,523
            CDSs (total)                      :: 4,452
            Genes (coding)                    :: 4,324
            CDSs (with protein)               :: 4,324
            Genes (RNA)                       :: 71
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 45 of 128
            Pseudo Genes (incomplete)         :: 89 of 128
            Pseudo Genes (internal stop)      :: 24 of 128
            Pseudo Genes (multiple problems)  :: 22 of 128
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5254542
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="1001175st1_C6"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="USA"
                     /collection_date="2016-03-14"
WGS         SPHD01000001-SPHD01000100
WGS_SCAFLD  NZ_SPHD01000001-NZ_SPHD01000100
//
LOCUS       NZ_UTTC01000000      5981159 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.C5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTTC00000000
VERSION     NZ_UTTC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472272
            Assembly: GCF_900585315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTTC00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTTC00000000.  This version of the project
            (01) has the accession number NZ_UTTC01000000, and consists of
            sequences UTTC01000001-UTTC01000051.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585315.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:43:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,358
            CDSs (total)                      :: 5,289
            Genes (coding)                    :: 5,208
            CDSs (with protein)               :: 5,208
            Genes (RNA)                       :: 69
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 14 of 81
            Pseudo Genes (incomplete)         :: 63 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981159
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.C5"
                     /db_xref="taxon:33069"
WGS         UTTC01000001-UTTC01000051
WGS_SCAFLD  NZ_UTTC01000001-NZ_UTTC01000051
//
LOCUS       NZ_SDQU01000000      2033926 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pediococcus acidilactici strain I32, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SDQU00000000
VERSION     NZ_SDQU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10822532
            Assembly: GCF_011009675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pediococcus acidilactici
  ORGANISM  Pediococcus acidilactici
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Pediococcus; Pediococcus acidilactici group.
REFERENCE   1  (bases 1 to 2033926)
  AUTHORS   Stedman,A., Van Vliet,A.H.M., Chambers,M. and Gutierrez-Merino,J.
  TITLE     The phenotype and complete genome sequence of lactic acid bacteria
            from European badgers (Meles meles) reveal potentially functional
            probiotic properties associated with antimicrobial activity and
            immunomodulation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2033926)
  AUTHORS   Stedman,A., Van Vliet,A.H.M., Chambers,M. and Gutierrez-Merino,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2019) School of Veterinary Medicine, Department
            of Pathology and Infectious Diseases, University of Surrey, Daphne
            Jackson Road, Guildford GU2 7AL, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SDQU00000000.1.
            The Pediococcus acidilactici whole genome shotgun (WGS) project has
            the project accession NZ_SDQU00000000.  This version of the project
            (01) has the accession number NZ_SDQU01000000, and consists of
            sequences SDQU01000001-SDQU01000042.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011009675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:07:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,974
            CDSs (total)                      :: 1,907
            Genes (coding)                    :: 1,885
            CDSs (with protein)               :: 1,885
            Genes (RNA)                       :: 67
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 3 of 22
            Pseudo Genes (incomplete)         :: 14 of 22
            Pseudo Genes (internal stop)      :: 6 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033926
                     /organism="Pediococcus acidilactici"
                     /mol_type="genomic DNA"
                     /strain="I32"
                     /isolation_source="fecal sample"
                     /host="Meles meles"
                     /db_xref="taxon:1254"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
WGS         SDQU01000001-SDQU01000042
WGS_SCAFLD  NZ_SDQU01000001-NZ_SDQU01000042
//
LOCUS       NZ_UTUA01000000      5984073 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.F5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTUA00000000
VERSION     NZ_UTUA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472292
            Assembly: GCF_900585545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTUA00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTUA00000000.  This version of the project
            (01) has the accession number NZ_UTUA01000000, and consists of
            sequences UTUA01000001-UTUA01000038.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585545.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:43:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,359
            CDSs (total)                      :: 5,285
            Genes (coding)                    :: 5,204
            CDSs (with protein)               :: 5,204
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 13 of 81
            Pseudo Genes (incomplete)         :: 64 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5984073
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.F5"
                     /db_xref="taxon:33069"
WGS         UTUA01000001-UTUA01000038
WGS_SCAFLD  NZ_UTUA01000001-NZ_UTUA01000038
//
LOCUS       NZ_UTIU01000000      6076288 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p1.A12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTIU00000000
VERSION     NZ_UTIU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472001
            Assembly: GCF_900582675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTIU00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTIU00000000.  This version of the project
            (01) has the accession number NZ_UTIU01000000, and consists of
            sequences UTIU01000001-UTIU01000086.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900582675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:45:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,487
            CDSs (total)                      :: 5,414
            Genes (coding)                    :: 5,303
            CDSs (with protein)               :: 5,303
            Genes (RNA)                       :: 73
            rRNAs                             :: 6, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 26 of 111
            Pseudo Genes (incomplete)         :: 86 of 111
            Pseudo Genes (internal stop)      :: 14 of 111
            Pseudo Genes (multiple problems)  :: 15 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6076288
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p1.A12"
                     /db_xref="taxon:33069"
WGS         UTIU01000001-UTIU01000086
WGS_SCAFLD  NZ_UTIU01000001-NZ_UTIU01000086
//
LOCUS       NZ_JACHAC010000000   4736827 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:435, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHAC000000000
VERSION     NZ_JACHAC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660284
            Assembly: GCF_016949195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4736827)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4736827)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAC000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAC000000000.  This version of the
            project (01) has the accession number NZ_JACHAC010000000, and
            consists of sequences JACHAC010000001-JACHAC010000098.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 825x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949195.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:54:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,273
            CDSs (total)                      :: 4,191
            Genes (coding)                    :: 4,127
            CDSs (with protein)               :: 4,127
            Genes (RNA)                       :: 82
            rRNAs                             :: 5, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 64
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 21 of 64
            Pseudo Genes (incomplete)         :: 52 of 64
            Pseudo Genes (internal stop)      :: 18 of 64
            Pseudo Genes (multiple problems)  :: 22 of 64
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4736827
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:435"
                     /host="Insect"
                     /db_xref="taxon:180957"
                     /geo_loc_name="Netherlands"
                     /collection_date="2018"
                     /collected_by="Robert Vreeburg"
WGS         JACHAC010000001-JACHAC010000098
WGS_SCAFLD  NZ_JACHAC010000001-NZ_JACHAC010000098
//
LOCUS       NZ_QPBN01000000      5843150 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas savastanoi pv. phaseolicola strain 533, whole genome
            shotgun sequencing project.
ACCESSION   NZ_QPBN00000000
VERSION     NZ_QPBN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09655445
            Assembly: GCF_003412865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas savastanoi pv. phaseolicola (Pseudomonas syringae pv.
            phaseolicola)
  ORGANISM  Pseudomonas savastanoi pv. phaseolicola
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5843150)
  AUTHORS   Almeida,R.N.D., Wang,P.W. and Guttman,D.S.
  TITLE     Draft Genome Sequences of Pseudomonas syringae Bean Isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5843150)
  AUTHORS   Almeida,R.N.D., Wang,P.W. and Guttman,D.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2018) Cell and Systems Biology, University of
            Toronto, 25 Willcocks Street, Toronto, Ontario M5S3B2, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QPBN00000000.1.
            The Pseudomonas savastanoi pv. phaseolicola whole genome shotgun
            (WGS) project has the project accession NZ_QPBN00000000.  This
            version of the project (01) has the accession number
            NZ_QPBN01000000, and consists of sequences
            QPBN01000001-QPBN01000255.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 65.6515072194x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003412865.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:44:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,493
            CDSs (total)                      :: 5,449
            Genes (coding)                    :: 4,989
            CDSs (with protein)               :: 4,989
            Genes (RNA)                       :: 44
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 460
            CDSs (without protein)            :: 460
            Pseudo Genes (ambiguous residues) :: 3 of 460
            Pseudo Genes (frameshifted)       :: 216 of 460
            Pseudo Genes (incomplete)         :: 230 of 460
            Pseudo Genes (internal stop)      :: 51 of 460
            Pseudo Genes (multiple problems)  :: 35 of 460
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5843150
                     /organism="Pseudomonas savastanoi pv. phaseolicola"
                     /mol_type="genomic DNA"
                     /strain="533"
                     /host="Phaseolus vulgaris"
                     /db_xref="taxon:319"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2012"
                     /pathovar="phaseolicola"
WGS         QPBN01000001-QPBN01000255
WGS_SCAFLD  NZ_QPBN01000001-NZ_QPBN01000255
//
LOCUS       NZ_JACHAG010000000   4747229 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:385, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHAG000000000
VERSION     NZ_JACHAG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660272
            Assembly: GCF_016949345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4747229)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4747229)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAG000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAG000000000.  This version of the
            project (01) has the accession number NZ_JACHAG010000000, and
            consists of sequences JACHAG010000001-JACHAG010000242.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1242x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949345.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:58:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,348
            CDSs (total)                      :: 4,262
            Genes (coding)                    :: 4,201
            CDSs (with protein)               :: 4,201
            Genes (RNA)                       :: 86
            rRNAs                             :: 4, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 1, 4, 5 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 14 of 61
            Pseudo Genes (incomplete)         :: 47 of 61
            Pseudo Genes (internal stop)      :: 12 of 61
            Pseudo Genes (multiple problems)  :: 10 of 61
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747229
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:385"
                     /host="insect"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACHAG010000001-JACHAG010000242
WGS_SCAFLD  NZ_JACHAG010000001-NZ_JACHAG010000242
//
LOCUS       NZ_UTWQ01000000      5882145 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p23.H6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTWQ00000000
VERSION     NZ_UTWQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472364
            Assembly: GCF_900586275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTWQ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTWQ00000000.  This version of the project
            (01) has the accession number NZ_UTWQ01000000, and consists of
            sequences UTWQ01000001-UTWQ01000056.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900586275.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:42:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,297
            CDSs (total)                      :: 5,219
            Genes (coding)                    :: 5,136
            CDSs (with protein)               :: 5,136
            Genes (RNA)                       :: 78
            rRNAs                             :: 7, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 20 of 83
            Pseudo Genes (incomplete)         :: 67 of 83
            Pseudo Genes (internal stop)      :: 10 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5882145
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p23.H6"
                     /db_xref="taxon:33069"
WGS         UTWQ01000001-UTWQ01000056
WGS_SCAFLD  NZ_UTWQ01000001-NZ_UTWQ01000056
//
LOCUS       NZ_JACGEW010000000   4657634 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:4056 NAK:264 GBBC:1756, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JACGEW000000000
VERSION     NZ_JACGEW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660278
            Assembly: GCF_016949515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4657634)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4657634)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGEW000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGEW000000000.  This version of the
            project (01) has the accession number NZ_JACGEW010000000, and
            consists of sequences JACGEW010000001-JACGEW010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 343x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949515.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:56:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,223
            CDSs (total)                      :: 4,145
            Genes (coding)                    :: 4,101
            CDSs (with protein)               :: 4,101
            Genes (RNA)                       :: 78
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 66
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 20 of 44
            Pseudo Genes (incomplete)         :: 28 of 44
            Pseudo Genes (internal stop)      :: 9 of 44
            Pseudo Genes (multiple problems)  :: 11 of 44
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657634
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:4056 NAK:264 GBBC:1756"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACGEW010000001-JACGEW010000040
WGS_SCAFLD  NZ_JACGEW010000001-NZ_JACGEW010000040
//
LOCUS       NZ_UTVN01000000      5911255 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p23.C2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTVN00000000
VERSION     NZ_UTVN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472324
            Assembly: GCF_900585945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTVN00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTVN00000000.  This version of the project
            (01) has the accession number NZ_UTVN01000000, and consists of
            sequences UTVN01000001-UTVN01000045.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585945.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:53:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,339
            CDSs (total)                      :: 5,264
            Genes (coding)                    :: 5,187
            CDSs (with protein)               :: 5,187
            Genes (RNA)                       :: 75
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 16 of 77
            Pseudo Genes (incomplete)         :: 60 of 77
            Pseudo Genes (internal stop)      :: 9 of 77
            Pseudo Genes (multiple problems)  :: 7 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5911255
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p23.C2"
                     /db_xref="taxon:33069"
WGS         UTVN01000001-UTVN01000045
WGS_SCAFLD  NZ_UTVN01000001-NZ_UTVN01000045
//
LOCUS       NZ_UTUJ01000000      5983004 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.G5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTUJ00000000
VERSION     NZ_UTUJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472298
            Assembly: GCF_900585635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTUJ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTUJ00000000.  This version of the project
            (01) has the accession number NZ_UTUJ01000000, and consists of
            sequences UTUJ01000001-UTUJ01000043.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:49:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,357
            CDSs (total)                      :: 5,283
            Genes (coding)                    :: 5,202
            CDSs (with protein)               :: 5,202
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 14 of 81
            Pseudo Genes (incomplete)         :: 63 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983004
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.G5"
                     /db_xref="taxon:33069"
WGS         UTUJ01000001-UTUJ01000043
WGS_SCAFLD  NZ_UTUJ01000001-NZ_UTUJ01000043
//
LOCUS       NZ_JACGEY010000000   4827191 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:252, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACGEY000000000
VERSION     NZ_JACGEY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660308
            Assembly: GCF_016949735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4827191)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4827191)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGEY000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGEY000000000.  This version of the
            project (01) has the accession number NZ_JACGEY010000000, and
            consists of sequences JACGEY010000001-JACGEY010000086.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 671x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949735.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:00:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,369
            CDSs (total)                      :: 4,292
            Genes (coding)                    :: 4,216
            CDSs (with protein)               :: 4,216
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 28 of 76
            Pseudo Genes (incomplete)         :: 63 of 76
            Pseudo Genes (internal stop)      :: 14 of 76
            Pseudo Genes (multiple problems)  :: 25 of 76
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4827191
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:252"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACGEY010000001-JACGEY010000086
WGS_SCAFLD  NZ_JACGEY010000001-NZ_JACGEY010000086
//
LOCUS       NZ_UTWR01000000      5881077 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p23.H2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTWR00000000
VERSION     NZ_UTWR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472361
            Assembly: GCF_900586265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTWR00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTWR00000000.  This version of the project
            (01) has the accession number NZ_UTWR01000000, and consists of
            sequences UTWR01000001-UTWR01000049.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900586265.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:00:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,298
            CDSs (total)                      :: 5,220
            Genes (coding)                    :: 5,136
            CDSs (with protein)               :: 5,136
            Genes (RNA)                       :: 78
            rRNAs                             :: 7, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 21 of 84
            Pseudo Genes (incomplete)         :: 67 of 84
            Pseudo Genes (internal stop)      :: 10 of 84
            Pseudo Genes (multiple problems)  :: 13 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5881077
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p23.H2"
                     /db_xref="taxon:33069"
WGS         UTWR01000001-UTWR01000049
WGS_SCAFLD  NZ_UTWR01000001-NZ_UTWR01000049
//
LOCUS       NZ_JACGES010000000   4759850 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:396, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACGES000000000
VERSION     NZ_JACGES000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660273
            Assembly: GCF_016949295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4759850)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4759850)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGES000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGES000000000.  This version of the
            project (01) has the accession number NZ_JACGES010000000, and
            consists of sequences JACGES010000001-JACGES010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 722x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:57:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,319
            CDSs (total)                      :: 4,243
            Genes (coding)                    :: 4,174
            CDSs (with protein)               :: 4,174
            Genes (RNA)                       :: 76
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 22 of 69
            Pseudo Genes (incomplete)         :: 51 of 69
            Pseudo Genes (internal stop)      :: 14 of 69
            Pseudo Genes (multiple problems)  :: 16 of 69
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4759850
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:396"
                     /host="Hyacint"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACGES010000001-JACGES010000080
WGS_SCAFLD  NZ_JACGES010000001-NZ_JACGES010000080
//
LOCUS       NZ_JACGFM010000000   4855562 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:3628, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACGFM000000000
VERSION     NZ_JACGFM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660325
            Assembly: GCF_016950195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4855562)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4855562)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGFM000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGFM000000000.  This version of the
            project (01) has the accession number NZ_JACGFM010000000, and
            consists of sequences JACGFM010000001-JACGFM010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 51x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016950195.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:03:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,380
            CDSs (total)                      :: 4,307
            Genes (coding)                    :: 4,237
            CDSs (with protein)               :: 4,237
            Genes (RNA)                       :: 73
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 62
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 22 of 70
            Pseudo Genes (incomplete)         :: 56 of 70
            Pseudo Genes (internal stop)      :: 7 of 70
            Pseudo Genes (multiple problems)  :: 12 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4855562
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:3628"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /geo_loc_name="South Africa: Eastern Freestate region"
WGS         JACGFM010000001-JACGFM010000049
WGS_SCAFLD  NZ_JACGFM010000001-NZ_JACGFM010000049
//
LOCUS       NZ_JACHAQ010000000   4725476 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:4058 NAK:235, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JACHAQ000000000
VERSION     NZ_JACHAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660305
            Assembly: GCF_016949915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4725476)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4725476)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAQ000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAQ000000000.  This version of the
            project (01) has the accession number NZ_JACHAQ010000000, and
            consists of sequences JACHAQ010000001-JACHAQ010000075.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 602x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949915.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:02:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,275
            CDSs (total)                      :: 4,199
            Genes (coding)                    :: 4,131
            CDSs (with protein)               :: 4,131
            Genes (RNA)                       :: 76
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 63
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 22 of 68
            Pseudo Genes (incomplete)         :: 55 of 68
            Pseudo Genes (internal stop)      :: 8 of 68
            Pseudo Genes (multiple problems)  :: 15 of 68
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4725476
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:4058 NAK:235"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACHAQ010000001-JACHAQ010000075
WGS_SCAFLD  NZ_JACHAQ010000001-NZ_JACHAQ010000075
//
LOCUS       NZ_SLZU01000000      5069498 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Primorskyibacter sedentarius strain DSM 104836, whole genome
            shotgun sequencing project.
ACCESSION   NZ_SLZU00000000
VERSION     NZ_SLZU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362855
            Assembly: GCF_004342065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Primorskyibacter sedentarius
  ORGANISM  Primorskyibacter sedentarius
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Roseobacteraceae; Primorskyibacter.
REFERENCE   1  (bases 1 to 5069498)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5069498)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLZU00000000.1.
            The Primorskyibacter sedentarius whole genome shotgun (WGS) project
            has the project accession NZ_SLZU00000000.  This version of the
            project (01) has the accession number NZ_SLZU01000000, and consists
            of sequences SLZU01000001-SLZU01000085.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 296.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342065.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:27:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,753
            CDSs (total)                      :: 4,703
            Genes (coding)                    :: 4,602
            CDSs (with protein)               :: 4,602
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 33 of 101
            Pseudo Genes (incomplete)         :: 83 of 101
            Pseudo Genes (internal stop)      :: 18 of 101
            Pseudo Genes (multiple problems)  :: 26 of 101
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5069498
                     /organism="Primorskyibacter sedentarius"
                     /mol_type="genomic DNA"
                     /strain="DSM 104836"
                     /culture_collection="DSM:104836"
                     /type_material="type strain of Primorskyibacter
                     sedentarius"
                     /db_xref="taxon:745311"
WGS         SLZU01000001-SLZU01000085
WGS_SCAFLD  NZ_SLZU01000001-NZ_SLZU01000085
//
LOCUS       NZ_JACHAB010000000   4890680 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:466, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHAB000000000
VERSION     NZ_JACHAB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660285
            Assembly: GCF_016949155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4890680)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4890680)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAB000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAB000000000.  This version of the
            project (01) has the accession number NZ_JACHAB010000000, and
            consists of sequences JACHAB010000001-JACHAB010000114.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1470x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:59:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,445
            CDSs (total)                      :: 4,368
            Genes (coding)                    :: 4,285
            CDSs (with protein)               :: 4,285
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 64
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 21 of 83
            Pseudo Genes (incomplete)         :: 57 of 83
            Pseudo Genes (internal stop)      :: 25 of 83
            Pseudo Genes (multiple problems)  :: 20 of 83
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4890680
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:466"
                     /isolation_source="water"
                     /db_xref="taxon:180957"
                     /geo_loc_name="Netherlands: North Brabant"
                     /collection_date="2017"
                     /collected_by="Robert Vreeburg"
WGS         JACHAB010000001-JACHAB010000114
WGS_SCAFLD  NZ_JACHAB010000001-NZ_JACHAB010000114
//
LOCUS       NZ_JACHAN010000000   4703649 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:250, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHAN000000000
VERSION     NZ_JACHAN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660303
            Assembly: GCF_016949775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4703649)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4703649)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAN000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAN000000000.  This version of the
            project (01) has the accession number NZ_JACHAN010000000, and
            consists of sequences JACHAN010000001-JACHAN010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 608x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949775.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:09:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,238
            CDSs (total)                      :: 4,154
            Genes (coding)                    :: 4,113
            CDSs (with protein)               :: 4,113
            Genes (RNA)                       :: 84
            rRNAs                             :: 4, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 70
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 13 of 41
            Pseudo Genes (incomplete)         :: 29 of 41
            Pseudo Genes (internal stop)      :: 14 of 41
            Pseudo Genes (multiple problems)  :: 12 of 41
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4703649
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:250"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACHAN010000001-JACHAN010000064
WGS_SCAFLD  NZ_JACHAN010000001-NZ_JACHAN010000064
//
LOCUS       NZ_JACHAL010000000   5044730 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:4066 NAK:259, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JACHAL000000000
VERSION     NZ_JACHAL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660311
            Assembly: GCF_016949655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5044730)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5044730)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAL000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAL000000000.  This version of the
            project (01) has the accession number NZ_JACHAL010000000, and
            consists of sequences JACHAL010000001-JACHAL010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 402x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949655.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:06:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,536
            CDSs (total)                      :: 4,455
            Genes (coding)                    :: 4,407
            CDSs (with protein)               :: 4,407
            Genes (RNA)                       :: 81
            rRNAs                             :: 4, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 68
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 15 of 48
            Pseudo Genes (incomplete)         :: 42 of 48
            Pseudo Genes (internal stop)      :: 6 of 48
            Pseudo Genes (multiple problems)  :: 11 of 48
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5044730
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:4066 NAK:259"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACHAL010000001-JACHAL010000080
WGS_SCAFLD  NZ_JACHAL010000001-NZ_JACHAL010000080
//
LOCUS       NZ_JACGEU010000000   5095663 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:4135 NAK:383, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JACGEU000000000
VERSION     NZ_JACGEU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660275
            Assembly: GCF_016949335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5095663)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5095663)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGEU000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGEU000000000.  This version of the
            project (01) has the accession number NZ_JACGEU010000000, and
            consists of sequences JACGEU010000001-JACGEU010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 167x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949335.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:09:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,570
            CDSs (total)                      :: 4,491
            Genes (coding)                    :: 4,445
            CDSs (with protein)               :: 4,445
            Genes (RNA)                       :: 79
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 14 of 46
            Pseudo Genes (incomplete)         :: 40 of 46
            Pseudo Genes (internal stop)      :: 7 of 46
            Pseudo Genes (multiple problems)  :: 11 of 46
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5095663
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:4135 NAK:383"
                     /host="insect"
                     /db_xref="taxon:180957"
                     /geo_loc_name="Netherlands"
                     /collection_date="2017"
                     /collected_by="Robert Vreeburg"
WGS         JACGEU010000001-JACGEU010000063
WGS_SCAFLD  NZ_JACGEU010000001-NZ_JACGEU010000063
//
LOCUS       NZ_JAEMBG010000000   2366674 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Porphyromonas gingivalis strain JKG10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEMBG000000000
VERSION     NZ_JAEMBG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17134864
            Assembly: GCF_021406605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Porphyromonas gingivalis
  ORGANISM  Porphyromonas gingivalis
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Porphyromonadaceae; Porphyromonas.
REFERENCE   1  (bases 1 to 2366674)
  AUTHORS   Sakae,K., Nagano,K., Furuhashi,M. and Hasegawa,Y.
  TITLE     Diversity analysis of genes encoding Mfa1 fimbrial components in
            Porphyromonas gingivalis strains
  JOURNAL   PLoS One 16 (7), e0255111 (2021)
   PUBMED   34310632
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366674)
  AUTHORS   Sakae,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2020) Dentistry, Health Sciences University of
            Hokkaido, 1757 Kanazawa, Tobetsu, Hokkaido 061-0293, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEMBG000000000.1.
            The Porphyromonas gingivalis whole genome shotgun (WGS) project has
            the project accession NZ_JAEMBG000000000.  This version of the
            project (01) has the accession number NZ_JAEMBG010000000, and
            consists of sequences JAEMBG010000001-JAEMBG010000112.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 2.2.4
            Expected Final Version :: Yes
            Genome Coverage        :: 708x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021406605.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:07:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,174
            CDSs (total)                      :: 2,122
            Genes (coding)                    :: 2,018
            CDSs (with protein)               :: 2,018
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 46 of 104
            Pseudo Genes (incomplete)         :: 79 of 104
            Pseudo Genes (internal stop)      :: 6 of 104
            Pseudo Genes (multiple problems)  :: 25 of 104
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366674
                     /organism="Porphyromonas gingivalis"
                     /mol_type="genomic DNA"
                     /strain="JKG10"
                     /isolation_source="Dental biofilm"
                     /host="Homo sapiens"
                     /db_xref="taxon:837"
                     /geo_loc_name="Japan"
                     /lat_lon="35.18 N 136.90 E"
                     /collection_date="2012-01-01"
WGS         JAEMBG010000001-JAEMBG010000112
WGS_SCAFLD  NZ_JAEMBG010000001-NZ_JAEMBG010000112
//
LOCUS       NZ_JAEMBP010000000   2440602 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Porphyromonas gingivalis strain D83T3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEMBP000000000
VERSION     NZ_JAEMBP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17134855
            Assembly: GCF_021406795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Porphyromonas gingivalis
  ORGANISM  Porphyromonas gingivalis
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Porphyromonadaceae; Porphyromonas.
REFERENCE   1  (bases 1 to 2440602)
  AUTHORS   Sakae,K., Nagano,K., Furuhashi,M. and Hasegawa,Y.
  TITLE     Diversity analysis of genes encoding Mfa1 fimbrial components in
            Porphyromonas gingivalis strains
  JOURNAL   PLoS One 16 (7), e0255111 (2021)
   PUBMED   34310632
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2440602)
  AUTHORS   Sakae,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2020) Dentistry, Health Sciences University of
            Hokkaido, 1757 Kanazawa, Tobetsu, Hokkaido 061-0293, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEMBP000000000.1.
            The Porphyromonas gingivalis whole genome shotgun (WGS) project has
            the project accession NZ_JAEMBP000000000.  This version of the
            project (01) has the accession number NZ_JAEMBP010000000, and
            consists of sequences JAEMBP010000001-JAEMBP010000134.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 2.2.4
            Expected Final Version :: Yes
            Genome Coverage        :: 750x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021406795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:10:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,235
            CDSs (total)                      :: 2,180
            Genes (coding)                    :: 2,090
            CDSs (with protein)               :: 2,090
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 24 of 90
            Pseudo Genes (incomplete)         :: 78 of 90
            Pseudo Genes (internal stop)      :: 5 of 90
            Pseudo Genes (multiple problems)  :: 17 of 90
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2440602
                     /organism="Porphyromonas gingivalis"
                     /mol_type="genomic DNA"
                     /strain="D83T3"
                     /isolation_source="Dental biofilm"
                     /host="Homo sapiens"
                     /db_xref="taxon:837"
                     /geo_loc_name="Japan"
                     /lat_lon="35.18 N 136.90 E"
                     /collection_date="2012-01-01"
WGS         JAEMBP010000001-JAEMBP010000134
WGS_SCAFLD  NZ_JAEMBP010000001-NZ_JAEMBP010000134
//
LOCUS       NZ_JACBPX010000000   5087776 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain FTJS5K1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACBPX000000000
VERSION     NZ_JACBPX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15186851
            Assembly: GCF_020827855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5087776)
  AUTHORS   Li,S., Wang,C., Zhang,C., Luo,Y., Cheng,Q., Yu,L. and Sun,Z.
  TITLE     Evaluation of the Effects of Different Bacteroides vulgatus Strains
            against DSS-Induced Colitis
  JOURNAL   J Immunol Res 2021, 9117805 (2021)
   PUBMED   34195297
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5087776)
  AUTHORS   Wang,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2020) Food, Jiangnan University, Lihu 1800, Wuxi
            214122, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACBPX000000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_JACBPX000000000.  This version of the project
            (01) has the accession number NZ_JACBPX010000000, and consists of
            sequences JACBPX010000001-JACBPX010000080.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. 2.3 OR MAY-2011
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020827855.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:14:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,228
            CDSs (total)                      :: 4,147
            Genes (coding)                    :: 4,012
            CDSs (with protein)               :: 4,012
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 45 of 135
            Pseudo Genes (incomplete)         :: 103 of 135
            Pseudo Genes (internal stop)      :: 30 of 135
            Pseudo Genes (multiple problems)  :: 32 of 135
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5087776
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="FTJS5K1"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China: Tian Jin"
                     /collection_date="2018-10-10"
WGS         JACBPX010000001-JACBPX010000080
WGS_SCAFLD  NZ_JACBPX010000001-NZ_JACBPX010000080
//
LOCUS       NZ_SLWY01000000      4396909 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Plasticicumulans lactativorans strain DSM 25287, whole genome
            shotgun sequencing project.
ACCESSION   NZ_SLWY00000000
VERSION     NZ_SLWY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866403
            Assembly: GCF_004341245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Plasticicumulans lactativorans
  ORGANISM  Plasticicumulans lactativorans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Candidatus Competibacteraceae; Plasticicumulans.
REFERENCE   1  (bases 1 to 4396909)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4396909)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLWY00000000.1.
            The Plasticicumulans lactativorans whole genome shotgun (WGS)
            project has the project accession NZ_SLWY00000000.  This version of
            the project (01) has the accession number NZ_SLWY01000000, and
            consists of sequences SLWY01000001-SLWY01000061.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 341.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341245.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:09:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,975
            CDSs (total)                      :: 3,917
            Genes (coding)                    :: 3,861
            CDSs (with protein)               :: 3,861
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 15 of 56
            Pseudo Genes (incomplete)         :: 46 of 56
            Pseudo Genes (internal stop)      :: 8 of 56
            Pseudo Genes (multiple problems)  :: 11 of 56
            CRISPR Arrays                     :: 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4396909
                     /organism="Plasticicumulans lactativorans"
                     /mol_type="genomic DNA"
                     /strain="DSM 25287"
                     /culture_collection="DSM:25287"
                     /type_material="type strain of Plasticicumulans
                     lactativorans"
                     /db_xref="taxon:1133106"
WGS         SLWY01000001-SLWY01000061
WGS_SCAFLD  NZ_SLWY01000001-NZ_SLWY01000061
//
LOCUS       NZ_JADQAT010000000   4979939 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Photobacterium leiognathi strain Ph2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JADQAT000000000
VERSION     NZ_JADQAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16812787
            Assembly: GCF_022129615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Photobacterium leiognathi
  ORGANISM  Photobacterium leiognathi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Photobacterium.
REFERENCE   1  (bases 1 to 4979939)
  AUTHORS   Zhu,J., Li,H., Jing,Z.Z., Zheng,W., Luo,Y.R., Chen,S.X. and Guo,F.
  TITLE     Robust host source tracking building on the divergent and
            non-stochastic assembly of gut microbiomes in wild and farmed large
            yellow croaker
  JOURNAL   Microbiome 10 (1), 18 (2022)
   PUBMED   35081990
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4979939)
  AUTHORS   Guo,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2020) School of Life Sciences, Xiamen University,
            Xiang'an South Road, Xiamen, Fujian Province 361102, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADQAT000000000.1.
            The Photobacterium leiognathi whole genome shotgun (WGS) project
            has the project accession NZ_JADQAT000000000.  This version of the
            project (01) has the accession number NZ_JADQAT010000000, and
            consists of sequences JADQAT010000001-JADQAT010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022129615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:21:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,545
            CDSs (total)                      :: 4,471
            Genes (coding)                    :: 4,428
            CDSs (with protein)               :: 4,428
            Genes (RNA)                       :: 74
            rRNAs                             :: 1, 2 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 24 of 43
            Pseudo Genes (incomplete)         :: 23 of 43
            Pseudo Genes (internal stop)      :: 12 of 43
            Pseudo Genes (multiple problems)  :: 12 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4979939
                     /organism="Photobacterium leiognathi"
                     /mol_type="genomic DNA"
                     /strain="Ph2"
                     /isolation_source="2217E medium"
                     /host="large yellow croaker"
                     /db_xref="taxon:553611"
                     /geo_loc_name="China: Fujian"
                     /lat_lon="24.61 N 118.30 E"
                     /collection_date="2020-08-01"
WGS         JADQAT010000001-JADQAT010000054
WGS_SCAFLD  NZ_JADQAT010000001-NZ_JADQAT010000054
//
LOCUS       NZ_JBFEAK010000000   6025824 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Peribacillus frigoritolerans strain UBN2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBFEAK000000000
VERSION     NZ_JBFEAK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN42161896
            Assembly: GCF_049131845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Peribacillus frigoritolerans
  ORGANISM  Peribacillus frigoritolerans
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Peribacillus.
REFERENCE   1  (bases 1 to 6025824)
  AUTHORS   Seidel,M., Hamley-Bennett,C., Reeksting,B.J., Hellmann,L.,
            Hoffmann,T.D., Kraemer,C., Paine,K. and Gebhard,S.
  TITLE     Metabolic insights into microbially induced calcite formation by
            Bacilli for application in bio-based construction materials
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6025824)
  AUTHORS   Seidel,M., Hamley-Bennett,C., Reeksting,B.J., Hellmann,L.,
            Hoffmann,T.D., Kraemer,C., Paine,K. and Gebhard,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2024) imP, Johannes Gutenberg-University,
            Hanns-Dieter-Huesch-Weg 17, Mainz 55122, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBFEAK000000000.1.
            The Peribacillus frigoritolerans whole genome shotgun (WGS) project
            has the project accession NZ_JBFEAK000000000.  This version of the
            project (01) has the accession number NZ_JBFEAK010000000, and
            consists of sequences JBFEAK010000001-JBFEAK010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. SEP-2023
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049131845.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:50:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,856
            CDSs (total)                      :: 5,725
            Genes (coding)                    :: 5,567
            CDSs (with protein)               :: 5,567
            Genes (RNA)                       :: 131
            rRNAs                             :: 14, 14, 14 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 14, 14 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 80 of 158
            Pseudo Genes (incomplete)         :: 103 of 158
            Pseudo Genes (internal stop)      :: 27 of 158
            Pseudo Genes (multiple problems)  :: 44 of 158
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6025824
                     /organism="Peribacillus frigoritolerans"
                     /mol_type="genomic DNA"
                     /strain="UBN2"
                     /isolation_source="Calcium rich sites"
                     /db_xref="taxon:450367"
                     /geo_loc_name="United Kingdom: University of Bath"
                     /lat_lon="51.3782 N 2.3264 W"
                     /collection_date="2017-07-01"
WGS         JBFEAK010000001-JBFEAK010000003
WGS_SCAFLD  NZ_JBFEAK010000001-NZ_JBFEAK010000003
//
LOCUS       NZ_CEVZPS010000000   3825829 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171610_bin_6471, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZPS000000000
VERSION     NZ_CEVZPS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089322
            Sequence Read Archive: DRR171610
            Assembly: GCF_982412835.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3825829)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZPS000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEVZPS000000000.  This version of the project
            (01) has the accession number NZ_CEVZPS010000000, and consists of
            sequences CEVZPS010000001-CEVZPS010000137.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171610.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982412835.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:26:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,062
            CDSs (total)                      :: 3,028
            Genes (coding)                    :: 2,976
            CDSs (with protein)               :: 2,976
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 11 of 54
            Pseudo Genes (incomplete)         :: 41 of 54
            Pseudo Genes (internal stop)      :: 6 of 54
            Pseudo Genes (multiple problems)  :: 4 of 54
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825829
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171610_bin_6471"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZPS010000001-CEVZPS010000137
WGS_SCAFLD  NZ_CEVZPS010000001-NZ_CEVZPS010000137
//
LOCUS       NZ_JAJISU010000000   5895084 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain BRIP65018-b, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJISU000000000
VERSION     NZ_JAJISU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23013835
            Assembly: GCF_028526805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5895084)
  AUTHORS   Djitro,N., Roach,R., Mann,R., Campbell,P.R., Rodoni,B. and
            Gambley,C.
  TITLE     Comparative genomics and genomic diversity of Pseudomonas syringae
            clade 2b-a in Australia
  JOURNAL   BMC Microbiol 22 (1), 278 (2022)
   PUBMED   36411421
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5895084)
  AUTHORS   Djitro,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2021) School of Applied Systems Biology, La Trobe
            University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3083, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJISU000000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_JAJISU000000000.  This version of the project
            (01) has the accession number NZ_JAJISU010000000, and consists of
            sequences JAJISU010000001-JAJISU010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028526805.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:57:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,163
            CDSs (total)                      :: 5,100
            Genes (coding)                    :: 4,971
            CDSs (with protein)               :: 4,971
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 40 of 129
            Pseudo Genes (incomplete)         :: 105 of 129
            Pseudo Genes (internal stop)      :: 20 of 129
            Pseudo Genes (multiple problems)  :: 32 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5895084
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="BRIP65018-b"
                     /isolation_source="leaf"
                     /host="Cucurbita pepo (Zucchini)"
                     /db_xref="taxon:317"
                     /geo_loc_name="Australia: Bundaberg"
                     /collection_date="2016-08-10"
WGS         JAJISU010000001-JAJISU010000066
WGS_SCAFLD  NZ_JAJISU010000001-NZ_JAJISU010000066
//
LOCUS       NZ_CEVZHK010000000   4219634 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171592_bin_5071, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZHK000000000
VERSION     NZ_CEVZHK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089177
            Sequence Read Archive: DRR171592
            Assembly: GCF_982410685.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 4219634)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZHK000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEVZHK000000000.  This version of the project
            (01) has the accession number NZ_CEVZHK010000000, and consists of
            sequences CEVZHK010000001-CEVZHK010000170.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171592.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982410685.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:33:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,634
            CDSs (total)                      :: 3,581
            Genes (coding)                    :: 3,498
            CDSs (with protein)               :: 3,498
            Genes (RNA)                       :: 53
            rRNAs                             :: 1 (23S)
            complete rRNAs                    :: 1 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 22 of 84
            Pseudo Genes (incomplete)         :: 57 of 84
            Pseudo Genes (internal stop)      :: 10 of 84
            Pseudo Genes (multiple problems)  :: 6 of 84
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4219634
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171592_bin_5071"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZHK010000001-CEVZHK010000170
WGS_SCAFLD  NZ_CEVZHK010000001-NZ_CEVZHK010000170
//
LOCUS       NZ_JAJITA010000000   5887791 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain KL004-k1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJITA000000000
VERSION     NZ_JAJITA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23013829
            Assembly: GCF_028526985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5887791)
  AUTHORS   Djitro,N., Roach,R., Mann,R., Campbell,P.R., Rodoni,B. and
            Gambley,C.
  TITLE     Comparative genomics and genomic diversity of Pseudomonas syringae
            clade 2b-a in Australia
  JOURNAL   BMC Microbiol 22 (1), 278 (2022)
   PUBMED   36411421
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5887791)
  AUTHORS   Djitro,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2021) School of Applied Systems Biology, La Trobe
            University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3083, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJITA000000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_JAJITA000000000.  This version of the project
            (01) has the accession number NZ_JAJITA010000000, and consists of
            sequences JAJITA010000001-JAJITA010000093.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028526985.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:08:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,183
            CDSs (total)                      :: 5,122
            Genes (coding)                    :: 4,985
            CDSs (with protein)               :: 4,985
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 39 of 137
            Pseudo Genes (incomplete)         :: 114 of 137
            Pseudo Genes (internal stop)      :: 20 of 137
            Pseudo Genes (multiple problems)  :: 32 of 137
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5887791
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="KL004-k1"
                     /isolation_source="leaf"
                     /host="Cucurbita pepo (Zucchini) var. Eva"
                     /db_xref="taxon:317"
                     /geo_loc_name="Australia: Bundaberg"
                     /collection_date="2016-08-10"
WGS         JAJITA010000001-JAJITA010000093
WGS_SCAFLD  NZ_JAJITA010000001-NZ_JAJITA010000093
//
LOCUS       NZ_LWIF01000000      2190154 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocoenobacter uteri strain M1063/93/3T, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LWIF00000000
VERSION     NZ_LWIF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04549225
            Assembly: GCF_029814155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocoenobacter uteri
  ORGANISM  Phocoenobacter uteri
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Phocoenobacter.
REFERENCE   1  (bases 1 to 2190154)
  AUTHORS   Hansen,M.J., Bojesen,A.M. and Planet,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2016) Department of Veterinary Disease Biology,
            University of Copenhagen, Stigboejlen 4, Frederiksberg C 1870,
            Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWIF00000000.1.
            The Phocoenobacter uteri whole genome shotgun (WGS) project has the
            project accession NZ_LWIF00000000.  This version of the project
            (01) has the accession number NZ_LWIF01000000, and consists of
            sequences LWIF01000001-LWIF01000002.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2016
            Assembly Method        :: HGAP3 v. 2016
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 459.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029814155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:20:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,053
            CDSs (total)                      :: 1,984
            Genes (coding)                    :: 1,962
            CDSs (with protein)               :: 1,962
            Genes (RNA)                       :: 69
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 12 of 22
            Pseudo Genes (incomplete)         :: 10 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190154
                     /organism="Phocoenobacter uteri"
                     /mol_type="genomic DNA"
                     /strain="M1063/93/3T"
                     /host="Harbor porpoise"
                     /db_xref="taxon:146806"
                     /geo_loc_name="United Kingdom: Scotland"
                     /collection_date="1993"
WGS         LWIF01000001-LWIF01000002
WGS_SCAFLD  NZ_LWIF01000001-NZ_LWIF01000002
//
LOCUS       NZ_CEVXNM010000000   2271244 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium sp. isolate DRR127708_bin_19430, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEVXNM000000000
VERSION     NZ_CEVXNM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122087986
            Sequence Read Archive: DRR127708
            Assembly: GCF_982398785.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium sp. (human gut metagenome)
  ORGANISM  Phascolarctobacterium sp.
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 2271244)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVXNM000000000.1.
            The Phascolarctobacterium sp. whole genome shotgun (WGS) project
            has the project accession NZ_CEVXNM000000000.  This version of the
            project (01) has the accession number NZ_CEVXNM010000000, and
            consists of sequences CEVXNM010000001-CEVXNM010000143.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR127708.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982398785.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:39:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,200
            CDSs (total)                      :: 2,155
            Genes (coding)                    :: 2,116
            CDSs (with protein)               :: 2,116
            Genes (RNA)                       :: 45
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 6 of 39
            Pseudo Genes (incomplete)         :: 32 of 39
            Pseudo Genes (internal stop)      :: 3 of 39
            Pseudo Genes (multiple problems)  :: 1 of 39
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271244
                     /organism="Phascolarctobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR127708_bin_19430"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:2049039"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVXNM010000001-CEVXNM010000143
WGS_SCAFLD  NZ_CEVXNM010000001-NZ_CEVXNM010000143
//
LOCUS       NZ_JAJISZ010000000   5883968 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain BRIP64883-a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJISZ000000000
VERSION     NZ_JAJISZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23013830
            Assembly: GCF_028526975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5883968)
  AUTHORS   Djitro,N., Roach,R., Mann,R., Campbell,P.R., Rodoni,B. and
            Gambley,C.
  TITLE     Comparative genomics and genomic diversity of Pseudomonas syringae
            clade 2b-a in Australia
  JOURNAL   BMC Microbiol 22 (1), 278 (2022)
   PUBMED   36411421
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5883968)
  AUTHORS   Djitro,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2021) School of Applied Systems Biology, La Trobe
            University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3083, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJISZ000000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_JAJISZ000000000.  This version of the project
            (01) has the accession number NZ_JAJISZ010000000, and consists of
            sequences JAJISZ010000001-JAJISZ010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028526975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:15:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,154
            CDSs (total)                      :: 5,091
            Genes (coding)                    :: 4,965
            CDSs (with protein)               :: 4,965
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 39 of 126
            Pseudo Genes (incomplete)         :: 103 of 126
            Pseudo Genes (internal stop)      :: 20 of 126
            Pseudo Genes (multiple problems)  :: 32 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5883968
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="BRIP64883-a"
                     /isolation_source="leaf"
                     /host="Cucurbita pepo (Zucchini) var. Rosa"
                     /db_xref="taxon:317"
                     /geo_loc_name="Australia: Bundaberg"
                     /collection_date="2016-06-13"
WGS         JAJISZ010000001-JAJISZ010000070
WGS_SCAFLD  NZ_JAJISZ010000001-NZ_JAJISZ010000070
//
LOCUS       NZ_CEWANE010000000   3683063 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171703_bin_242, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWANE000000000
VERSION     NZ_CEWANE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090135
            Sequence Read Archive: DRR171703
            Assembly: GCF_982419105.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3683063)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWANE000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEWANE000000000.  This version of the project
            (01) has the accession number NZ_CEWANE010000000, and consists of
            sequences CEWANE010000001-CEWANE010000089.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171703.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982419105.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:58:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,881
            CDSs (total)                      :: 2,830
            Genes (coding)                    :: 2,801
            CDSs (with protein)               :: 2,801
            Genes (RNA)                       :: 51
            tRNAs                             :: 49
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 25 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683063
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171703_bin_242"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWANE010000001-CEWANE010000089
WGS_SCAFLD  NZ_CEWANE010000001-NZ_CEWANE010000089
//
LOCUS       NZ_CEWARA010000000   3262076 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171702_bin_35675, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWARA000000000
VERSION     NZ_CEWARA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090125
            Sequence Read Archive: DRR171702
            Assembly: GCF_982419925.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3262076)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWARA000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEWARA000000000.  This version of the project
            (01) has the accession number NZ_CEWARA010000000, and consists of
            sequences CEWARA010000001-CEWARA010000144.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171702.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982419925.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:58:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,728
            CDSs (total)                      :: 2,696
            Genes (coding)                    :: 2,640
            CDSs (with protein)               :: 2,640
            Genes (RNA)                       :: 32
            tRNAs                             :: 30
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 18 of 57
            Pseudo Genes (incomplete)         :: 38 of 57
            Pseudo Genes (internal stop)      :: 5 of 57
            Pseudo Genes (multiple problems)  :: 5 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262076
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171702_bin_35675"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWARA010000001-CEWARA010000144
WGS_SCAFLD  NZ_CEWARA010000001-NZ_CEWARA010000144
//
LOCUS       NZ_CEWAVZ010000000   3429560 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola coprocola isolate DRR171690_bin_9290, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWAVZ000000000
VERSION     NZ_CEWAVZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090008
            Sequence Read Archive: DRR171690
            Assembly: GCF_982421235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola coprocola (human gut metagenome)
  ORGANISM  Phocaeicola coprocola
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3429560)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWAVZ000000000.1.
            The Phocaeicola coprocola whole genome shotgun (WGS) project has
            the project accession NZ_CEWAVZ000000000.  This version of the
            project (01) has the accession number NZ_CEWAVZ010000000, and
            consists of sequences CEWAVZ010000001-CEWAVZ010000124.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171690.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982421235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:56:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,864
            CDSs (total)                      :: 2,805
            Genes (coding)                    :: 2,716
            CDSs (with protein)               :: 2,716
            Genes (RNA)                       :: 59
            tRNAs                             :: 57
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 24 of 89
            Pseudo Genes (incomplete)         :: 60 of 89
            Pseudo Genes (internal stop)      :: 17 of 89
            Pseudo Genes (multiple problems)  :: 11 of 89
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3429560
                     /organism="Phocaeicola coprocola"
                     /mol_type="genomic DNA"
                     /isolate="DRR171690_bin_9290"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310298"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWAVZ010000001-CEWAVZ010000124
WGS_SCAFLD  NZ_CEWAVZ010000001-NZ_CEWAVZ010000124
//
LOCUS       NZ_JAEFTH010000000   4040338 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain WU-023-E1-U09, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEFTH000000000
VERSION     NZ_JAEFTH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17039080
            Assembly: GCF_029118645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4040338)
  AUTHORS   Thaenert,R.
  TITLE     The gut reservoir facilitates uropathogen persistence and in-host
            adaptation in UTIs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4040338)
  AUTHORS   Choi,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2020) Pathology and Immunology, Washington
            University in St. Louis School of Medicine, 660 S Euclid Ave, St.
            Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEFTH000000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JAEFTH000000000.  This version of the project
            (01) has the accession number NZ_JAEFTH010000000, and consists of
            sequences JAEFTH010000001-JAEFTH010000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 401.443897489854x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029118645.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:27:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,799
            CDSs (total)                      :: 3,712
            Genes (coding)                    :: 3,655
            CDSs (with protein)               :: 3,655
            Genes (RNA)                       :: 87
            rRNAs                             :: 4, 1, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3, 6 (5S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 17 of 57
            Pseudo Genes (incomplete)         :: 39 of 57
            Pseudo Genes (internal stop)      :: 14 of 57
            Pseudo Genes (multiple problems)  :: 9 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4040338
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="WU-023-E1-U09"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /geo_loc_name="USA"
                     /lat_lon="38.63 N 90.27 W"
                     /collection_date="2018-05-16"
                     /collected_by="Washington University"
WGS         JAEFTH010000001-JAEFTH010000066
WGS_SCAFLD  NZ_JAEFTH010000001-NZ_JAEFTH010000066
//
LOCUS       NZ_JAJISV010000000   5894762 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain BRIP65014-d, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJISV000000000
VERSION     NZ_JAJISV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23013834
            Assembly: GCF_028526875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5894762)
  AUTHORS   Djitro,N., Roach,R., Mann,R., Campbell,P.R., Rodoni,B. and
            Gambley,C.
  TITLE     Comparative genomics and genomic diversity of Pseudomonas syringae
            clade 2b-a in Australia
  JOURNAL   BMC Microbiol 22 (1), 278 (2022)
   PUBMED   36411421
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5894762)
  AUTHORS   Djitro,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2021) School of Applied Systems Biology, La Trobe
            University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3083, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJISV000000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_JAJISV000000000.  This version of the project
            (01) has the accession number NZ_JAJISV010000000, and consists of
            sequences JAJISV010000001-JAJISV010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028526875.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:30:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,165
            CDSs (total)                      :: 5,102
            Genes (coding)                    :: 4,971
            CDSs (with protein)               :: 4,971
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 39 of 131
            Pseudo Genes (incomplete)         :: 108 of 131
            Pseudo Genes (internal stop)      :: 20 of 131
            Pseudo Genes (multiple problems)  :: 32 of 131
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5894762
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="BRIP65014-d"
                     /isolation_source="fruit"
                     /host="Cucurbita pepo (Zucchini) var. Eva"
                     /db_xref="taxon:317"
                     /geo_loc_name="Australia: Bundaberg"
                     /collection_date="2016-06-13"
WGS         JAJISV010000001-JAJISV010000066
WGS_SCAFLD  NZ_JAJISV010000001-NZ_JAJISV010000066
//
LOCUS       NZ_CEWCYM010000000   2175431 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Peptacetobacter hiranonis isolate DRR171859_bin_12277, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWCYM000000000
VERSION     NZ_CEWCYM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091242
            Sequence Read Archive: DRR171859
            Assembly: GCF_982435385.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Peptacetobacter hiranonis (human gut metagenome)
  ORGANISM  Peptacetobacter hiranonis
            Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales;
            Peptostreptococcaceae; Peptacetobacter.
REFERENCE   1  (bases 1 to 2175431)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCYM000000000.1.
            The Peptacetobacter hiranonis whole genome shotgun (WGS) project
            has the project accession NZ_CEWCYM000000000.  This version of the
            project (01) has the accession number NZ_CEWCYM010000000, and
            consists of sequences CEWCYM010000001-CEWCYM010000284.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171859.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982435385.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:21:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,107
            CDSs (total)                      :: 2,086
            Genes (coding)                    :: 2,064
            CDSs (with protein)               :: 2,064
            Genes (RNA)                       :: 21
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            tRNAs                             :: 14
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175431
                     /organism="Peptacetobacter hiranonis"
                     /mol_type="genomic DNA"
                     /isolate="DRR171859_bin_12277"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:89152"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCYM010000001-CEWCYM010000284
WGS_SCAFLD  NZ_CEWCYM010000001-NZ_CEWCYM010000284
//
LOCUS       NZ_JAQZQZ010000000   7024010 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas chlororaphis strain ATCC 13985, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQZQZ000000000
VERSION     NZ_JAQZQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33193863
            Assembly: GCF_029536135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas chlororaphis
  ORGANISM  Pseudomonas chlororaphis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7024010)
  AUTHORS   Wheeldon,I., Thorwall,S. and Trivedi,V.
  TITLE     Population genomics-guided engineering of phenazine biosynthesis in
            Pseudomonas chlororaphis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7024010)
  AUTHORS   Wheeldon,I., Thorwall,S. and Trivedi,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2023) Chemical and Environmental Engineering,
            University of California, Riverside, 900 University Avenue,
            Riverside, CA 92521, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQZQZ000000000.1.
            The Pseudomonas chlororaphis whole genome shotgun (WGS) project has
            the project accession NZ_JAQZQZ000000000.  This version of the
            project (01) has the accession number NZ_JAQZQZ010000000, and
            consists of sequences JAQZQZ010000001-JAQZQZ010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 89x
            Sequencing Technology  :: Illumina NextSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029536135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:42:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,434
            CDSs (total)                      :: 6,347
            Genes (coding)                    :: 6,257
            CDSs (with protein)               :: 6,257
            Genes (RNA)                       :: 87
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 26 of 90
            Pseudo Genes (incomplete)         :: 66 of 90
            Pseudo Genes (internal stop)      :: 8 of 90
            Pseudo Genes (multiple problems)  :: 9 of 90
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7024010
                     /organism="Pseudomonas chlororaphis"
                     /mol_type="genomic DNA"
                     /strain="ATCC 13985"
                     /isolation_source="river clay"
                     /culture_collection="ATCC:13985"
                     /db_xref="taxon:587753"
                     /geo_loc_name="Netherlands: Maas River"
                     /collection_date="1936"
                     /collected_by="H. Bouman"
WGS         JAQZQZ010000001-JAQZQZ010000010
WGS_SCAFLD  NZ_JAQZQZ010000001-NZ_JAQZQZ010000010
//
LOCUS       NZ_CEWAPB010000000   2497976 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium succinatutens isolate
            DRR171683_bin_7114, whole genome shotgun sequencing project.
ACCESSION   NZ_CEWAPB000000000
VERSION     NZ_CEWAPB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089962
            Sequence Read Archive: DRR171683
            Assembly: GCF_982419445.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium succinatutens (human gut metagenome)
  ORGANISM  Phascolarctobacterium succinatutens
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 2497976)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWAPB000000000.1.
            The Phascolarctobacterium succinatutens whole genome shotgun (WGS)
            project has the project accession NZ_CEWAPB000000000.  This version
            of the project (01) has the accession number NZ_CEWAPB010000000,
            and consists of sequences CEWAPB010000001-CEWAPB010000045.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171683.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982419445.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:19:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,325
            CDSs (total)                      :: 2,264
            Genes (coding)                    :: 2,241
            CDSs (with protein)               :: 2,241
            Genes (RNA)                       :: 61
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 8 of 23
            Pseudo Genes (incomplete)         :: 15 of 23
            Pseudo Genes (internal stop)      :: 5 of 23
            Pseudo Genes (multiple problems)  :: 5 of 23
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497976
                     /organism="Phascolarctobacterium succinatutens"
                     /mol_type="genomic DNA"
                     /isolate="DRR171683_bin_7114"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:626940"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWAPB010000001-CEWAPB010000045
WGS_SCAFLD  NZ_CEWAPB010000001-NZ_CEWAPB010000045
//
LOCUS       NZ_CEWBAL010000000   2453200 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium faecium isolate DRR171701_bin_22634,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CEWBAL000000000
VERSION     NZ_CEWBAL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090102
            Sequence Read Archive: DRR171701
            Assembly: GCF_982422375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium faecium (human gut metagenome)
  ORGANISM  Phascolarctobacterium faecium
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 2453200)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWBAL000000000.1.
            The Phascolarctobacterium faecium whole genome shotgun (WGS)
            project has the project accession NZ_CEWBAL000000000.  This version
            of the project (01) has the accession number NZ_CEWBAL010000000,
            and consists of sequences CEWBAL010000001-CEWBAL010000032.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171701.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982422375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:26:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,422
            CDSs (total)                      :: 2,364
            Genes (coding)                    :: 2,351
            CDSs (with protein)               :: 2,351
            Genes (RNA)                       :: 58
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 12 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453200
                     /organism="Phascolarctobacterium faecium"
                     /mol_type="genomic DNA"
                     /isolate="DRR171701_bin_22634"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:33025"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWBAL010000001-CEWBAL010000032
WGS_SCAFLD  NZ_CEWBAL010000001-NZ_CEWBAL010000032
//
LOCUS       NZ_CEWCBK010000000   3467406 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171828_bin_9040, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWCBK000000000
VERSION     NZ_CEWCBK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091048
            Sequence Read Archive: DRR171828
            Assembly: GCF_982429405.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3467406)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCBK000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEWCBK000000000.  This version of the project
            (01) has the accession number NZ_CEWCBK010000000, and consists of
            sequences CEWCBK010000001-CEWCBK010000119.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171828.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982429405.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:25:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,821
            CDSs (total)                      :: 2,781
            Genes (coding)                    :: 2,730
            CDSs (with protein)               :: 2,730
            Genes (RNA)                       :: 40
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 16 of 52
            Pseudo Genes (incomplete)         :: 33 of 52
            Pseudo Genes (internal stop)      :: 4 of 52
            Pseudo Genes (multiple problems)  :: 2 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3467406
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171828_bin_9040"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCBK010000001-CEWCBK010000119
WGS_SCAFLD  NZ_CEWCBK010000001-NZ_CEWCBK010000119
//
LOCUS       NZ_JAQZQV010000000   6863056 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas chlororaphis strain ATCC 17810, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQZQV000000000
VERSION     NZ_JAQZQV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33193876
            Assembly: GCF_029536015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas chlororaphis
  ORGANISM  Pseudomonas chlororaphis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6863056)
  AUTHORS   Wheeldon,I., Thorwall,S. and Trivedi,V.
  TITLE     Population genomics-guided engineering of phenazine biosynthesis in
            Pseudomonas chlororaphis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6863056)
  AUTHORS   Wheeldon,I., Thorwall,S. and Trivedi,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2023) Chemical and Environmental Engineering,
            University of California, Riverside, 900 University Avenue,
            Riverside, CA 92521, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQZQV000000000.1.
            The Pseudomonas chlororaphis whole genome shotgun (WGS) project has
            the project accession NZ_JAQZQV000000000.  This version of the
            project (01) has the accession number NZ_JAQZQV010000000, and
            consists of sequences JAQZQV010000001-JAQZQV010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 87x
            Sequencing Technology  :: Illumina NextSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029536015.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:45:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,243
            CDSs (total)                      :: 6,156
            Genes (coding)                    :: 6,061
            CDSs (with protein)               :: 6,061
            Genes (RNA)                       :: 87
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 23 of 95
            Pseudo Genes (incomplete)         :: 77 of 95
            Pseudo Genes (internal stop)      :: 16 of 95
            Pseudo Genes (multiple problems)  :: 17 of 95
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6863056
                     /organism="Pseudomonas chlororaphis"
                     /mol_type="genomic DNA"
                     /strain="ATCC 17810"
                     /isolation_source="soil"
                     /culture_collection="ATCC:17810"
                     /db_xref="taxon:587753"
WGS         JAQZQV010000001-JAQZQV010000002
WGS_SCAFLD  NZ_JAQZQV010000001-NZ_JAQZQV010000002
//
LOCUS       NZ_CEWCSV010000000   3836450 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171861_bin_14110, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWCSV000000000
VERSION     NZ_CEWCSV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091266
            Sequence Read Archive: DRR171861
            Assembly: GCF_982433925.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3836450)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCSV000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEWCSV000000000.  This version of the project
            (01) has the accession number NZ_CEWCSV010000000, and consists of
            sequences CEWCSV010000001-CEWCSV010000060.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171861.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982433925.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:33:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,119
            CDSs (total)                      :: 3,073
            Genes (coding)                    :: 3,024
            CDSs (with protein)               :: 3,024
            Genes (RNA)                       :: 46
            tRNAs                             :: 44
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 14 of 50
            Pseudo Genes (incomplete)         :: 30 of 50
            Pseudo Genes (internal stop)      :: 6 of 50
            Pseudo Genes (multiple problems)  :: 1 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3836450
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171861_bin_14110"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCSV010000001-CEWCSV010000060
WGS_SCAFLD  NZ_CEWCSV010000001-NZ_CEWCSV010000060
//
LOCUS       NZ_CEVZHQ010000000   3088062 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Prevotella sp. isolate DRR171572_bin_23580, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZHQ000000000
VERSION     NZ_CEVZHQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089032
            Sequence Read Archive: DRR171572
            Assembly: GCF_982410765.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Prevotella sp. (human gut metagenome)
  ORGANISM  Prevotella sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Prevotellaceae; Prevotella.
REFERENCE   1  (bases 1 to 3088062)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZHQ000000000.1.
            The Prevotella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVZHQ000000000.  This version of the project
            (01) has the accession number NZ_CEVZHQ010000000, and consists of
            sequences CEVZHQ010000001-CEVZHQ010000183.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171572.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982410765.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:04:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,446
            CDSs (total)                      :: 2,392
            Genes (coding)                    :: 2,338
            CDSs (with protein)               :: 2,338
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 6 of 54
            Pseudo Genes (incomplete)         :: 45 of 54
            Pseudo Genes (internal stop)      :: 7 of 54
            Pseudo Genes (multiple problems)  :: 3 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088062
                     /organism="Prevotella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171572_bin_23580"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:59823"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZHQ010000001-CEVZHQ010000183
WGS_SCAFLD  NZ_CEVZHQ010000001-NZ_CEVZHQ010000183
//
LOCUS       NZ_CEWCDW010000000   2450951 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium succinatutens isolate DRR171827_bin_4,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CEWCDW000000000
VERSION     NZ_CEWCDW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091032
            Sequence Read Archive: DRR171827
            Assembly: GCF_982430025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium succinatutens (human gut metagenome)
  ORGANISM  Phascolarctobacterium succinatutens
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 2450951)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCDW000000000.1.
            The Phascolarctobacterium succinatutens whole genome shotgun (WGS)
            project has the project accession NZ_CEWCDW000000000.  This version
            of the project (01) has the accession number NZ_CEWCDW010000000,
            and consists of sequences CEWCDW010000001-CEWCDW010000051.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171827.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982430025.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:43:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,403
            CDSs (total)                      :: 2,339
            Genes (coding)                    :: 2,308
            CDSs (with protein)               :: 2,308
            Genes (RNA)                       :: 64
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 8 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 2 of 31
            Pseudo Genes (multiple problems)  :: 3 of 31
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450951
                     /organism="Phascolarctobacterium succinatutens"
                     /mol_type="genomic DNA"
                     /isolate="DRR171827_bin_4"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:626940"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCDW010000001-CEWCDW010000051
WGS_SCAFLD  NZ_CEWCDW010000001-NZ_CEWCDW010000051
//
LOCUS       NZ_CEVZWY010000000   1719189 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Peptostreptococcus sp. isolate DRR171670_bin_99, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZWY000000000
VERSION     NZ_CEVZWY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089839
            Sequence Read Archive: DRR171670
            Assembly: GCF_982415025.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Peptostreptococcus sp. (human gut metagenome)
  ORGANISM  Peptostreptococcus sp.
            Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales;
            Peptostreptococcaceae; Peptostreptococcus.
REFERENCE   1  (bases 1 to 1719189)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZWY000000000.1.
            The Peptostreptococcus sp. whole genome shotgun (WGS) project has
            the project accession NZ_CEVZWY000000000.  This version of the
            project (01) has the accession number NZ_CEVZWY010000000, and
            consists of sequences CEVZWY010000001-CEVZWY010000075.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171670.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982415025.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:53:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,540
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,493
            CDSs (with protein)               :: 1,493
            Genes (RNA)                       :: 25
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 21 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719189
                     /organism="Peptostreptococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171670_bin_99"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1262"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZWY010000001-CEVZWY010000075
WGS_SCAFLD  NZ_CEVZWY010000001-NZ_CEVZWY010000075
//
LOCUS       NZ_JBMIHZ010000000   5523822 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Priestia megaterium strain SSi130, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMIHZ000000000
VERSION     NZ_JBMIHZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46824169
            Assembly: GCF_049194065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Priestia megaterium (Bacillus megaterium)
  ORGANISM  Priestia megaterium
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Priestia.
REFERENCE   1  (bases 1 to 5523822)
  AUTHORS   Pereyra,J.P.A., Taylor,J.A., Gan,S.X., Maithani,P. and Case,R.J.
  TITLE     Draft genomes of four Bacillales species isolated from Sargassum
            ilicifolium in Singapore
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5523822)
  AUTHORS   Pereyra,J.P.A., Taylor,J.A., Gan,S.X., Maithani,P. and Case,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2025) SCELSE, Nanyang Technological University,
            60 Nanyang Drive, Singapore, NSW 637551, Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMIHZ000000000.1.
            The Priestia megaterium whole genome shotgun (WGS) project has the
            project accession NZ_JBMIHZ000000000.  This version of the project
            (01) has the accession number NZ_JBMIHZ010000000, and consists of
            sequences JBMIHZ010000001-JBMIHZ010000103.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 1.1.0; SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 182x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049194065.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:14:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,892
            CDSs (total)                      :: 5,723
            Genes (coding)                    :: 5,657
            CDSs (with protein)               :: 5,657
            Genes (RNA)                       :: 169
            rRNAs                             :: 17, 9, 12 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 12, 9, 12 (5S, 16S, 23S)
            tRNAs                             :: 123
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 22 of 66
            Pseudo Genes (incomplete)         :: 36 of 66
            Pseudo Genes (internal stop)      :: 12 of 66
            Pseudo Genes (multiple problems)  :: 4 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5523822
                     /organism="Priestia megaterium"
                     /mol_type="genomic DNA"
                     /strain="SSi130"
                     /isolation_source="seaweed"
                     /host="Sargassum ilicifolium"
                     /db_xref="taxon:1404"
                     /geo_loc_name="Singapore: St John's Island wharf"
                     /lat_lon="1.222353 N 103.848702 E"
                     /collection_date="2022-08-02"
                     /collected_by="Jessica A Taylor"
WGS         JBMIHZ010000001-JBMIHZ010000103
WGS_SCAFLD  NZ_JBMIHZ010000001-NZ_JBMIHZ010000103
//
LOCUS       NZ_CEWDQW010000000   3364542 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171948_bin_19485, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWDQW000000000
VERSION     NZ_CEWDQW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091898
            Sequence Read Archive: DRR171948
            Assembly: GCF_982441235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3364542)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWDQW000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEWDQW000000000.  This version of the project
            (01) has the accession number NZ_CEWDQW010000000, and consists of
            sequences CEWDQW010000001-CEWDQW010000112.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171948.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982441235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:52:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,863
            CDSs (total)                      :: 2,824
            Genes (coding)                    :: 2,747
            CDSs (with protein)               :: 2,747
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 20 of 78
            Pseudo Genes (incomplete)         :: 54 of 78
            Pseudo Genes (internal stop)      :: 10 of 78
            Pseudo Genes (multiple problems)  :: 7 of 78
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3364542
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171948_bin_19485"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWDQW010000001-CEWDQW010000112
WGS_SCAFLD  NZ_CEWDQW010000001-NZ_CEWDQW010000112
//
LOCUS       NZ_CEWAMW010000000   2187468 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Porphyromonas sp. isolate DRR171693_bin_66, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWAMW000000000
VERSION     NZ_CEWAMW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090041
            Sequence Read Archive: DRR171693
            Assembly: GCF_982419115.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Porphyromonas sp. (human gut metagenome)
  ORGANISM  Porphyromonas sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Porphyromonadaceae; Porphyromonas.
REFERENCE   1  (bases 1 to 2187468)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWAMW000000000.1.
            The Porphyromonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWAMW000000000.  This version of the project
            (01) has the accession number NZ_CEWAMW010000000, and consists of
            sequences CEWAMW010000001-CEWAMW010000049.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171693.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982419115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:50:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,762
            CDSs (total)                      :: 1,717
            Genes (coding)                    :: 1,691
            CDSs (with protein)               :: 1,691
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 21 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 6 of 26
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187468
                     /organism="Porphyromonas sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171693_bin_66"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1924944"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWAMW010000001-CEWAMW010000049
WGS_SCAFLD  NZ_CEWAMW010000001-NZ_CEWAMW010000049
//
LOCUS       NZ_CEWEBY010000000   3209984 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola coprophilus isolate DRR171994_bin_15244, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWEBY000000000
VERSION     NZ_CEWEBY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122092287
            Sequence Read Archive: DRR171994
            Assembly: GCF_982444125.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola coprophilus (human gut metagenome)
  ORGANISM  Phocaeicola coprophilus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3209984)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWEBY000000000.1.
            The Phocaeicola coprophilus whole genome shotgun (WGS) project has
            the project accession NZ_CEWEBY000000000.  This version of the
            project (01) has the accession number NZ_CEWEBY010000000, and
            consists of sequences CEWEBY010000001-CEWEBY010000074.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171994.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982444125.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:00:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,678
            CDSs (total)                      :: 2,643
            Genes (coding)                    :: 2,598
            CDSs (with protein)               :: 2,598
            Genes (RNA)                       :: 35
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 13 of 45
            Pseudo Genes (incomplete)         :: 36 of 45
            Pseudo Genes (internal stop)      :: 8 of 45
            Pseudo Genes (multiple problems)  :: 9 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209984
                     /organism="Phocaeicola coprophilus"
                     /mol_type="genomic DNA"
                     /isolate="DRR171994_bin_15244"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:387090"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWEBY010000001-CEWEBY010000074
WGS_SCAFLD  NZ_CEWEBY010000001-NZ_CEWEBY010000074
//
LOCUS       NZ_CEWCFX010000000   1906155 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Porphyromonas uenonis isolate DRR171832_bin_21049, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWCFX000000000
VERSION     NZ_CEWCFX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091068
            Sequence Read Archive: DRR171832
            Assembly: GCF_982430555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Porphyromonas uenonis (human gut metagenome)
  ORGANISM  Porphyromonas uenonis
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Porphyromonadaceae; Porphyromonas.
REFERENCE   1  (bases 1 to 1906155)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCFX000000000.1.
            The Porphyromonas uenonis whole genome shotgun (WGS) project has
            the project accession NZ_CEWCFX000000000.  This version of the
            project (01) has the accession number NZ_CEWCFX010000000, and
            consists of sequences CEWCFX010000001-CEWCFX010000251.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171832.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982430555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:14:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,635
            CDSs (total)                      :: 1,595
            Genes (coding)                    :: 1,535
            CDSs (with protein)               :: 1,535
            Genes (RNA)                       :: 40
            tRNAs                             :: 39
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 3 of 60
            Pseudo Genes (incomplete)         :: 53 of 60
            Pseudo Genes (internal stop)      :: 7 of 60
            Pseudo Genes (multiple problems)  :: 2 of 60
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906155
                     /organism="Porphyromonas uenonis"
                     /mol_type="genomic DNA"
                     /isolate="DRR171832_bin_21049"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:281920"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCFX010000001-CEWCFX010000251
WGS_SCAFLD  NZ_CEWCFX010000001-NZ_CEWCFX010000251
//
LOCUS       NZ_CEWDVD010000000   3695460 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola coprocola isolate DRR171990_bin_9456, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWDVD000000000
VERSION     NZ_CEWDVD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122092259
            Sequence Read Archive: DRR171990
            Assembly: GCF_982442355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola coprocola (human gut metagenome)
  ORGANISM  Phocaeicola coprocola
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3695460)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWDVD000000000.1.
            The Phocaeicola coprocola whole genome shotgun (WGS) project has
            the project accession NZ_CEWDVD000000000.  This version of the
            project (01) has the accession number NZ_CEWDVD010000000, and
            consists of sequences CEWDVD010000001-CEWDVD010000172.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171990.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982442355.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:01:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,101
            CDSs (total)                      :: 3,042
            Genes (coding)                    :: 2,962
            CDSs (with protein)               :: 2,962
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 24 of 80
            Pseudo Genes (incomplete)         :: 58 of 80
            Pseudo Genes (internal stop)      :: 7 of 80
            Pseudo Genes (multiple problems)  :: 9 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695460
                     /organism="Phocaeicola coprocola"
                     /mol_type="genomic DNA"
                     /isolate="DRR171990_bin_9456"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310298"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWDVD010000001-CEWDVD010000172
WGS_SCAFLD  NZ_CEWDVD010000001-NZ_CEWDVD010000172
//
LOCUS       NZ_CEWBQT010000000   2766408 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Prevotella sp. isolate DRR171778_bin_13630, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWBQT000000000
VERSION     NZ_CEWBQT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090656
            Sequence Read Archive: DRR171778
            Assembly: GCF_982426615.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Prevotella sp. (human gut metagenome)
  ORGANISM  Prevotella sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Prevotellaceae; Prevotella.
REFERENCE   1  (bases 1 to 2766408)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWBQT000000000.1.
            The Prevotella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWBQT000000000.  This version of the project
            (01) has the accession number NZ_CEWBQT010000000, and consists of
            sequences CEWBQT010000001-CEWBQT010000132.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171778.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982426615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:16:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,199
            CDSs (total)                      :: 2,162
            Genes (coding)                    :: 2,116
            CDSs (with protein)               :: 2,116
            Genes (RNA)                       :: 37
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 11 of 46
            Pseudo Genes (incomplete)         :: 42 of 46
            Pseudo Genes (internal stop)      :: 1 of 46
            Pseudo Genes (multiple problems)  :: 7 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766408
                     /organism="Prevotella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171778_bin_13630"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:59823"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWBQT010000001-CEWBQT010000132
WGS_SCAFLD  NZ_CEWBQT010000001-NZ_CEWBQT010000132
//
LOCUS       NZ_CEVZCI010000000   4024285 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola coprocola isolate DRR171513_bin_11776, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEVZCI000000000
VERSION     NZ_CEVZCI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088668
            Sequence Read Archive: DRR171513
            Assembly: GCF_982409395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola coprocola (human gut metagenome)
  ORGANISM  Phocaeicola coprocola
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 4024285)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZCI000000000.1.
            The Phocaeicola coprocola whole genome shotgun (WGS) project has
            the project accession NZ_CEVZCI000000000.  This version of the
            project (01) has the accession number NZ_CEVZCI010000000, and
            consists of sequences CEVZCI010000001-CEVZCI010000195.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171513.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982409395.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:06:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,298
            CDSs (total)                      :: 3,257
            Genes (coding)                    :: 3,170
            CDSs (with protein)               :: 3,170
            Genes (RNA)                       :: 41
            tRNAs                             :: 40
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 23 of 87
            Pseudo Genes (incomplete)         :: 61 of 87
            Pseudo Genes (internal stop)      :: 18 of 87
            Pseudo Genes (multiple problems)  :: 13 of 87
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4024285
                     /organism="Phocaeicola coprocola"
                     /mol_type="genomic DNA"
                     /isolate="DRR171513_bin_11776"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310298"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZCI010000001-CEVZCI010000195
WGS_SCAFLD  NZ_CEVZCI010000001-NZ_CEVZCI010000195
//
LOCUS       NZ_CEVZFT010000000   3669665 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phocaeicola plebeius isolate DRR171591_bin_25296, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZFT000000000
VERSION     NZ_CEVZFT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089172
            Sequence Read Archive: DRR171591
            Assembly: GCF_982410235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phocaeicola plebeius (human gut metagenome)
  ORGANISM  Phocaeicola plebeius
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 3669665)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZFT000000000.1.
            The Phocaeicola plebeius whole genome shotgun (WGS) project has the
            project accession NZ_CEVZFT000000000.  This version of the project
            (01) has the accession number NZ_CEVZFT010000000, and consists of
            sequences CEVZFT010000001-CEVZFT010000171.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171591.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982410235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:04:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,082
            CDSs (total)                      :: 3,031
            Genes (coding)                    :: 2,972
            CDSs (with protein)               :: 2,972
            Genes (RNA)                       :: 51
            rRNAs                             :: 2 (23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 14 of 59
            Pseudo Genes (incomplete)         :: 40 of 59
            Pseudo Genes (internal stop)      :: 7 of 59
            Pseudo Genes (multiple problems)  :: 2 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669665
                     /organism="Phocaeicola plebeius"
                     /mol_type="genomic DNA"
                     /isolate="DRR171591_bin_25296"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:310297"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZFT010000001-CEVZFT010000171
WGS_SCAFLD  NZ_CEVZFT010000001-NZ_CEVZFT010000171
//
LOCUS       NZ_CEWCVE010000000   3478360 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Prevotella sp. isolate DRR171901_bin_12307, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWCVE000000000
VERSION     NZ_CEWCVE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091519
            Sequence Read Archive: DRR171901
            Assembly: GCF_982434545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Prevotella sp. (human gut metagenome)
  ORGANISM  Prevotella sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Prevotellaceae; Prevotella.
REFERENCE   1  (bases 1 to 3478360)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCVE000000000.1.
            The Prevotella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWCVE000000000.  This version of the project
            (01) has the accession number NZ_CEWCVE010000000, and consists of
            sequences CEWCVE010000001-CEWCVE010000133.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171901.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982434545.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:35:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,801
            CDSs (total)                      :: 2,765
            Genes (coding)                    :: 2,709
            CDSs (with protein)               :: 2,709
            Genes (RNA)                       :: 36
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 9 of 56
            Pseudo Genes (incomplete)         :: 50 of 56
            Pseudo Genes (internal stop)      :: 5 of 56
            Pseudo Genes (multiple problems)  :: 6 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3478360
                     /organism="Prevotella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171901_bin_12307"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:59823"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCVE010000001-CEWCVE010000133
WGS_SCAFLD  NZ_CEWCVE010000001-NZ_CEWCVE010000133
//
LOCUS       NZ_CEVYSC010000000   1983661 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium succinatutens isolate
            DRR171511_bin_8891, whole genome shotgun sequencing project.
ACCESSION   NZ_CEVYSC000000000
VERSION     NZ_CEVYSC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088657
            Sequence Read Archive: DRR171511
            Assembly: GCF_982406695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium succinatutens (human gut metagenome)
  ORGANISM  Phascolarctobacterium succinatutens
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 1983661)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVYSC000000000.1.
            The Phascolarctobacterium succinatutens whole genome shotgun (WGS)
            project has the project accession NZ_CEVYSC000000000.  This version
            of the project (01) has the accession number NZ_CEVYSC010000000,
            and consists of sequences CEVYSC010000001-CEVYSC010000200.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171511.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982406695.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,932
            CDSs (total)                      :: 1,895
            Genes (coding)                    :: 1,866
            CDSs (with protein)               :: 1,866
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 32
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 23 of 29
            Pseudo Genes (internal stop)      :: 4 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983661
                     /organism="Phascolarctobacterium succinatutens"
                     /mol_type="genomic DNA"
                     /isolate="DRR171511_bin_8891"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:626940"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVYSC010000001-CEVYSC010000200
WGS_SCAFLD  NZ_CEVYSC010000001-NZ_CEVYSC010000200
//
LOCUS       NZ_CEVYGM010000000   3190356 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Prevotella sp. isolate DRR171495_bin_27703, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVYGM000000000
VERSION     NZ_CEVYGM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088505
            Sequence Read Archive: DRR171495
            Assembly: GCF_982403715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Prevotella sp. (human gut metagenome)
  ORGANISM  Prevotella sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Prevotellaceae; Prevotella.
REFERENCE   1  (bases 1 to 3190356)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVYGM000000000.1.
            The Prevotella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVYGM000000000.  This version of the project
            (01) has the accession number NZ_CEVYGM010000000, and consists of
            sequences CEVYGM010000001-CEVYGM010000127.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171495.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982403715.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:00:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,624
            CDSs (total)                      :: 2,570
            Genes (coding)                    :: 2,510
            CDSs (with protein)               :: 2,510
            Genes (RNA)                       :: 54
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 10 of 61
            Pseudo Genes (incomplete)         :: 51 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 7 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3190356
                     /organism="Prevotella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171495_bin_27703"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:59823"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVYGM010000001-CEVYGM010000127
WGS_SCAFLD  NZ_CEVYGM010000001-NZ_CEVYGM010000127
//
LOCUS       NZ_CEVZQR010000000   1771669 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium succinatutens isolate
            DRR171600_bin_5366, whole genome shotgun sequencing project.
ACCESSION   NZ_CEVZQR000000000
VERSION     NZ_CEVZQR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089225
            Sequence Read Archive: DRR171600
            Assembly: GCF_982413115.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium succinatutens (human gut metagenome)
  ORGANISM  Phascolarctobacterium succinatutens
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 1771669)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZQR000000000.1.
            The Phascolarctobacterium succinatutens whole genome shotgun (WGS)
            project has the project accession NZ_CEVZQR000000000.  This version
            of the project (01) has the accession number NZ_CEVZQR010000000,
            and consists of sequences CEVZQR010000001-CEVZQR010000330.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171600.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982413115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:14:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,782
            CDSs (total)                      :: 1,759
            Genes (coding)                    :: 1,714
            CDSs (with protein)               :: 1,714
            Genes (RNA)                       :: 23
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 2 of 45
            Pseudo Genes (incomplete)         :: 38 of 45
            Pseudo Genes (internal stop)      :: 6 of 45
            Pseudo Genes (multiple problems)  :: 1 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771669
                     /organism="Phascolarctobacterium succinatutens"
                     /mol_type="genomic DNA"
                     /isolate="DRR171600_bin_5366"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:626940"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZQR010000001-CEVZQR010000330
WGS_SCAFLD  NZ_CEVZQR010000001-NZ_CEVZQR010000330
//
LOCUS       NZ_CEVZWM010000000   3139400 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Prevotella sp. isolate DRR171631_bin_6563, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZWM000000000
VERSION     NZ_CEVZWM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089495
            Sequence Read Archive: DRR171631
            Assembly: GCF_982414655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Prevotella sp. (human gut metagenome)
  ORGANISM  Prevotella sp.
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Prevotellaceae; Prevotella.
REFERENCE   1  (bases 1 to 3139400)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZWM000000000.1.
            The Prevotella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVZWM000000000.  This version of the project
            (01) has the accession number NZ_CEVZWM010000000, and consists of
            sequences CEVZWM010000001-CEVZWM010000218.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171631.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982414655.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:05:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,555
            CDSs (total)                      :: 2,529
            Genes (coding)                    :: 2,465
            CDSs (with protein)               :: 2,465
            Genes (RNA)                       :: 26
            tRNAs                             :: 24
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 11 of 64
            Pseudo Genes (incomplete)         :: 57 of 64
            Pseudo Genes (internal stop)      :: 5 of 64
            Pseudo Genes (multiple problems)  :: 8 of 64
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3139400
                     /organism="Prevotella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171631_bin_6563"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:59823"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZWM010000001-CEVZWM010000218
WGS_SCAFLD  NZ_CEVZWM010000001-NZ_CEVZWM010000218
//
LOCUS       NZ_CEWEEC010000000   2036822 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium succinatutens isolate
            DRR172012_bin_5385, whole genome shotgun sequencing project.
ACCESSION   NZ_CEWEEC000000000
VERSION     NZ_CEWEEC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122092425
            Sequence Read Archive: DRR172012
            Assembly: GCF_982444675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium succinatutens (human gut metagenome)
  ORGANISM  Phascolarctobacterium succinatutens
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 2036822)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWEEC000000000.1.
            The Phascolarctobacterium succinatutens whole genome shotgun (WGS)
            project has the project accession NZ_CEWEEC000000000.  This version
            of the project (01) has the accession number NZ_CEWEEC010000000,
            and consists of sequences CEWEEC010000001-CEWEEC010000365.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR172012.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982444675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:24:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,975
            CDSs (total)                      :: 1,939
            Genes (coding)                    :: 1,917
            CDSs (with protein)               :: 1,917
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 30
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 3 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036822
                     /organism="Phascolarctobacterium succinatutens"
                     /mol_type="genomic DNA"
                     /isolate="DRR172012_bin_5385"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:626940"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2015"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWEEC010000001-CEWEEC010000365
WGS_SCAFLD  NZ_CEWEEC010000001-NZ_CEWEEC010000365
//
LOCUS       NZ_JBUXOL010000000   3982452 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain CRE118, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBUXOL000000000
VERSION     NZ_JBUXOL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN55285817
            Assembly: GCF_056762815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 3982452)
  AUTHORS   Zhang,Q.
  TITLE     Aztreonam-Avibactam against Carbapenem-Resistant Enterobacterales:
            Susceptibility and Genomic Analysis in a Chinese Teaching Hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3982452)
  AUTHORS   Zhang,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2026) clinical lab, shenzhen hopspital of
            southern medical university, xinhu, shenzhen, gungdong 518100,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBUXOL000000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JBUXOL000000000.  This version of the project
            (01) has the accession number NZ_JBUXOL010000000, and consists of
            sequences JBUXOL010000001-JBUXOL010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-NOV-2025
            Assembly Method        :: SPAdes v. v3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056762815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 23:00:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,696
            CDSs (total)                      :: 3,617
            Genes (coding)                    :: 3,559
            CDSs (with protein)               :: 3,559
            Genes (RNA)                       :: 79
            rRNAs                             :: 2, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 12 of 58
            Pseudo Genes (incomplete)         :: 48 of 58
            Pseudo Genes (internal stop)      :: 13 of 58
            Pseudo Genes (multiple problems)  :: 11 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3982452
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="CRE118"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /geo_loc_name="China: Guangdong, Shenzhen"
                     /lat_lon="22.45 N 113.52 E"
                     /collection_date="2024-07-28"
                     /collected_by="Shenzhen Hospital, Southern Medical
                     University"
WGS         JBUXOL010000001-JBUXOL010000059
WGS_SCAFLD  NZ_JBUXOL010000001-NZ_JBUXOL010000059
//
LOCUS       NZ_CEVZHW010000000   2267790 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phascolarctobacterium faecium isolate DRR171575_bin_10228,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CEVZHW000000000
VERSION     NZ_CEVZHW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089048
            Sequence Read Archive: DRR171575
            Assembly: GCF_982410795.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Phascolarctobacterium faecium (human gut metagenome)
  ORGANISM  Phascolarctobacterium faecium
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Phascolarctobacterium.
REFERENCE   1  (bases 1 to 2267790)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZHW000000000.1.
            The Phascolarctobacterium faecium whole genome shotgun (WGS)
            project has the project accession NZ_CEVZHW000000000.  This version
            of the project (01) has the accession number NZ_CEVZHW010000000,
            and consists of sequences CEVZHW010000001-CEVZHW010000100.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171575.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982410795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:27:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,158
            CDSs (total)                      :: 2,103
            Genes (coding)                    :: 2,090
            CDSs (with protein)               :: 2,090
            Genes (RNA)                       :: 55
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 2 of 13
            Pseudo Genes (incomplete)         :: 11 of 13
            Pseudo Genes (internal stop)      :: 1 of 13
            Pseudo Genes (multiple problems)  :: 1 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267790
                     /organism="Phascolarctobacterium faecium"
                     /mol_type="genomic DNA"
                     /isolate="DRR171575_bin_10228"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:33025"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZHW010000001-CEVZHW010000100
WGS_SCAFLD  NZ_CEVZHW010000001-NZ_CEVZHW010000100
//
LOCUS       NZ_JBPGWS010000000   6613040 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas koreensis strain KU2C, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPGWS000000000
VERSION     NZ_JBPGWS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941050
            Assembly: GCF_056754825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas koreensis
  ORGANISM  Pseudomonas koreensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6613040)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6613040)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGWS000000000.1.
            The Pseudomonas koreensis whole genome shotgun (WGS) project has
            the project accession NZ_JBPGWS000000000.  This version of the
            project (01) has the accession number NZ_JBPGWS010000000, and
            consists of sequences JBPGWS010000001-JBPGWS010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 114x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754825.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:33:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,837
            CDSs (total)                      :: 5,742
            Genes (coding)                    :: 5,621
            CDSs (with protein)               :: 5,621
            Genes (RNA)                       :: 95
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 51 of 121
            Pseudo Genes (incomplete)         :: 81 of 121
            Pseudo Genes (internal stop)      :: 12 of 121
            Pseudo Genes (multiple problems)  :: 20 of 121
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6613040
                     /organism="Pseudomonas koreensis"
                     /mol_type="genomic DNA"
                     /strain="KU2C"
                     /db_xref="taxon:198620"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2021-09-22"
WGS         JBPGWS010000001-JBPGWS010000003
WGS_SCAFLD  NZ_JBPGWS010000001-NZ_JBPGWS010000003
//
LOCUS       NZ_JBPGXS010000000   6277510 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas koreensis strain KU3C, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPGXS000000000
VERSION     NZ_JBPGXS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941051
            Assembly: GCF_056755615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas koreensis
  ORGANISM  Pseudomonas koreensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6277510)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6277510)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGXS000000000.1.
            The Pseudomonas koreensis whole genome shotgun (WGS) project has
            the project accession NZ_JBPGXS000000000.  This version of the
            project (01) has the accession number NZ_JBPGXS010000000, and
            consists of sequences JBPGXS010000001-JBPGXS010000705.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:56:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,706
            CDSs (total)                      :: 5,637
            Genes (coding)                    :: 5,527
            CDSs (with protein)               :: 5,527
            Genes (RNA)                       :: 69
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 16 of 110
            Pseudo Genes (incomplete)         :: 99 of 110
            Pseudo Genes (internal stop)      :: 10 of 110
            Pseudo Genes (multiple problems)  :: 12 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6277510
                     /organism="Pseudomonas koreensis"
                     /mol_type="genomic DNA"
                     /strain="KU3C"
                     /db_xref="taxon:198620"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2021-09-22"
WGS         JBPGXS010000001-JBPGXS010000705
WGS_SCAFLD  NZ_JBPGXS010000001-NZ_JBPGXS010000705
//
LOCUS       NZ_JBPGXH010000000   6305194 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas koreensis strain MSUFA, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPGXH000000000
VERSION     NZ_JBPGXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941066
            Assembly: GCF_056755295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas koreensis
  ORGANISM  Pseudomonas koreensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6305194)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6305194)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGXH000000000.1.
            The Pseudomonas koreensis whole genome shotgun (WGS) project has
            the project accession NZ_JBPGXH000000000.  This version of the
            project (01) has the accession number NZ_JBPGXH010000000, and
            consists of sequences JBPGXH010000001-JBPGXH010000474.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 91x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:50:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,719
            CDSs (total)                      :: 5,649
            Genes (coding)                    :: 5,540
            CDSs (with protein)               :: 5,540
            Genes (RNA)                       :: 70
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 15 of 109
            Pseudo Genes (incomplete)         :: 98 of 109
            Pseudo Genes (internal stop)      :: 11 of 109
            Pseudo Genes (multiple problems)  :: 12 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6305194
                     /organism="Pseudomonas koreensis"
                     /mol_type="genomic DNA"
                     /strain="MSUFA"
                     /db_xref="taxon:198620"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2021-10-01"
WGS         JBPGXH010000001-JBPGXH010000474
WGS_SCAFLD  NZ_JBPGXH010000001-NZ_JBPGXH010000474
//
LOCUS       NZ_JBPVZF010000000   6511891 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas koreensis strain MSUFE, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPVZF000000000
VERSION     NZ_JBPVZF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941067
            Assembly: GCF_056755135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas koreensis
  ORGANISM  Pseudomonas koreensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6511891)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6511891)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPVZF000000000.1.
            The Pseudomonas koreensis whole genome shotgun (WGS) project has
            the project accession NZ_JBPVZF000000000.  This version of the
            project (01) has the accession number NZ_JBPVZF010000000, and
            consists of sequences JBPVZF010000001-JBPVZF010001256.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 230x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:53:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,354
            CDSs (total)                      :: 6,268
            Genes (coding)                    :: 5,996
            CDSs (with protein)               :: 5,996
            Genes (RNA)                       :: 86
            rRNAs                             :: 2, 8, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 8, 13 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 272
            CDSs (without protein)            :: 272
            Pseudo Genes (ambiguous residues) :: 0 of 272
            Pseudo Genes (frameshifted)       :: 18 of 272
            Pseudo Genes (incomplete)         :: 258 of 272
            Pseudo Genes (internal stop)      :: 19 of 272
            Pseudo Genes (multiple problems)  :: 20 of 272
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6511891
                     /organism="Pseudomonas koreensis"
                     /mol_type="genomic DNA"
                     /strain="MSUFE"
                     /db_xref="taxon:198620"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2021-10-01"
WGS         JBPVZF010000001-JBPVZF010001256
WGS_SCAFLD  NZ_JBPVZF010000001-NZ_JBPVZF010001256
//
LOCUS       NZ_CEWACT010000000   3084050 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Segatella buccae isolate DRR171674_bin_42, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWACT000000000
VERSION     NZ_CEWACT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089873
            Sequence Read Archive: DRR171674
            Assembly: GCF_982416225.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Segatella buccae (human gut metagenome)
  ORGANISM  Segatella buccae
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Prevotellaceae; Segatella.
REFERENCE   1  (bases 1 to 3084050)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWACT000000000.1.
            The Segatella buccae whole genome shotgun (WGS) project has the
            project accession NZ_CEWACT000000000.  This version of the project
            (01) has the accession number NZ_CEWACT010000000, and consists of
            sequences CEWACT010000001-CEWACT010000060.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171674.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982416225.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:37:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,431
            CDSs (total)                      :: 2,387
            Genes (coding)                    :: 2,354
            CDSs (with protein)               :: 2,354
            Genes (RNA)                       :: 44
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 8 of 33
            Pseudo Genes (incomplete)         :: 26 of 33
            Pseudo Genes (internal stop)      :: 2 of 33
            Pseudo Genes (multiple problems)  :: 3 of 33
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3084050
                     /organism="Segatella buccae"
                     /mol_type="genomic DNA"
                     /isolate="DRR171674_bin_42"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:28126"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWACT010000001-CEWACT010000060
WGS_SCAFLD  NZ_CEWACT010000001-NZ_CEWACT010000060
//
LOCUS       NZ_CEWAVC010000000   2767388 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Rikenella microfusus isolate DRR171710_bin_19625, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWAVC000000000
VERSION     NZ_CEWAVC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090184
            Sequence Read Archive: DRR171710
            Assembly: GCF_982420985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Rikenella microfusus (human gut metagenome)
  ORGANISM  Rikenella microfusus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Rikenellaceae; Rikenella.
REFERENCE   1  (bases 1 to 2767388)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWAVC000000000.1.
            The Rikenella microfusus whole genome shotgun (WGS) project has the
            project accession NZ_CEWAVC000000000.  This version of the project
            (01) has the accession number NZ_CEWAVC010000000, and consists of
            sequences CEWAVC010000001-CEWAVC010000057.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171710.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982420985.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:27:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,182
            CDSs (total)                      :: 2,137
            Genes (coding)                    :: 2,117
            CDSs (with protein)               :: 2,117
            Genes (RNA)                       :: 45
            rRNAs                             :: 1 (16S)
            complete rRNAs                    :: 1 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 4 of 20
            Pseudo Genes (incomplete)         :: 16 of 20
            Pseudo Genes (internal stop)      :: 1 of 20
            Pseudo Genes (multiple problems)  :: 1 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767388
                     /organism="Rikenella microfusus"
                     /mol_type="genomic DNA"
                     /isolate="DRR171710_bin_19625"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:28139"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWAVC010000001-CEWAVC010000057
WGS_SCAFLD  NZ_CEWAVC010000001-NZ_CEWAVC010000057
//
LOCUS       NZ_CEWAUB010000000   2532387 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus sp. isolate DRR171703_bin_12367, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWAUB000000000
VERSION     NZ_CEWAUB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090132
            Sequence Read Archive: DRR171703
            Assembly: GCF_982420715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus sp. (human gut metagenome)
  ORGANISM  Ruminococcus sp.
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2532387)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWAUB000000000.1.
            The Ruminococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWAUB000000000.  This version of the project
            (01) has the accession number NZ_CEWAUB010000000, and consists of
            sequences CEWAUB010000001-CEWAUB010000035.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171703.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982420715.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:39:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,279
            CDSs (total)                      :: 2,235
            Genes (coding)                    :: 2,218
            CDSs (with protein)               :: 2,218
            Genes (RNA)                       :: 44
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 2 of 17
            Pseudo Genes (incomplete)         :: 14 of 17
            Pseudo Genes (internal stop)      :: 1 of 17
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532387
                     /organism="Ruminococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171703_bin_12367"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:41978"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWAUB010000001-CEWAUB010000035
WGS_SCAFLD  NZ_CEWAUB010000001-NZ_CEWAUB010000035
//
LOCUS       NZ_JBWZET010000000   4211005 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Rhizomicrobium sp. isolate Mq_MAG85, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWZET000000000
VERSION     NZ_JBWZET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN42238534
            Assembly: GCF_056722145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Rhizomicrobium sp. (plant metagenome)
  ORGANISM  Rhizomicrobium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Micropepsales; Micropepsaceae; Rhizomicrobium.
REFERENCE   1  (bases 1 to 4211005)
  AUTHORS   Jeffrey,L.C., Leung,P.M., Greening,C. and Maher,D.T.
  TITLE     Wetland tree barks are dynamic hotspots for microbial trace gas
            cycling
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4211005)
  AUTHORS   Jeffrey,L.C., Leung,P.M., Greening,C. and Maher,D.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUL-2024) Department of Microbiology, Biomedicine
            Discovery Institute, Monash University, Clayton, Melbourne 3800,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWZET000000000.1.
            The Rhizomicrobium sp. whole genome shotgun (WGS) project has the
            project accession NZ_JBWZET000000000.  This version of the project
            (01) has the accession number NZ_JBWZET010000000, and consists of
            sequences JBWZET010000001-JBWZET010000395.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: Megahit v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29.40x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056722145.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 03:24:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,132
            CDSs (total)                      :: 4,085
            Genes (coding)                    :: 3,970
            CDSs (with protein)               :: 3,970
            Genes (RNA)                       :: 47
            tRNAs                             :: 42
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 5 of 115
            Pseudo Genes (incomplete)         :: 107 of 115
            Pseudo Genes (internal stop)      :: 5 of 115
            Pseudo Genes (multiple problems)  :: 2 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211005
                     /organism="Rhizomicrobium sp."
                     /mol_type="genomic DNA"
                     /isolate="Mq_MAG85"
                     /isolation_source="tree bark"
                     /host="Melaleuca quinquenervia"
                     /db_xref="taxon:1978228"
                     /environmental_sample
                     /geo_loc_name="Australia: New South Wales"
                     /lat_lon="28.35 S 153.57 E"
                     /collection_date="2021"
                     /metagenome_source="plant metagenome"
                     /metagenomic
WGS         JBWZET010000001-JBWZET010000395
WGS_SCAFLD  NZ_JBWZET010000001-NZ_JBWZET010000395
//
LOCUS       NZ_UUFK01000000      5982486 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.F4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUFK00000000
VERSION     NZ_UUFK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472589
            Assembly: GCF_900588515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUFK00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUFK00000000.  This version of the project
            (01) has the accession number NZ_UUFK01000000, and consists of
            sequences UUFK01000001-UUFK01000041.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588515.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:42:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,357
            CDSs (total)                      :: 5,283
            Genes (coding)                    :: 5,202
            CDSs (with protein)               :: 5,202
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 2 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 13 of 81
            Pseudo Genes (incomplete)         :: 63 of 81
            Pseudo Genes (internal stop)      :: 12 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982486
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.F4"
                     /db_xref="taxon:33069"
WGS         UUFK01000001-UUFK01000041
WGS_SCAFLD  NZ_UUFK01000001-NZ_UUFK01000041
//
LOCUS       NZ_UUFJ01000000      5982627 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.F5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUFJ00000000
VERSION     NZ_UUFJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472590
            Assembly: GCF_900588525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUFJ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUFJ00000000.  This version of the project
            (01) has the accession number NZ_UUFJ01000000, and consists of
            sequences UUFJ01000001-UUFJ01000039.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588525.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:48:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,359
            CDSs (total)                      :: 5,285
            Genes (coding)                    :: 5,205
            CDSs (with protein)               :: 5,205
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 13 of 80
            Pseudo Genes (incomplete)         :: 63 of 80
            Pseudo Genes (internal stop)      :: 11 of 80
            Pseudo Genes (multiple problems)  :: 7 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982627
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.F5"
                     /db_xref="taxon:33069"
WGS         UUFJ01000001-UUFJ01000039
WGS_SCAFLD  NZ_UUFJ01000001-NZ_UUFJ01000039
//
LOCUS       NZ_UUEK01000000      5982938 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.C5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUEK00000000
VERSION     NZ_UUEK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472563
            Assembly: GCF_900588255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUEK00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUEK00000000.  This version of the project
            (01) has the accession number NZ_UUEK01000000, and consists of
            sequences UUEK01000001-UUEK01000041.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:53:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,359
            CDSs (total)                      :: 5,285
            Genes (coding)                    :: 5,204
            CDSs (with protein)               :: 5,204
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 13 of 81
            Pseudo Genes (incomplete)         :: 64 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982938
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.C5"
                     /db_xref="taxon:33069"
WGS         UUEK01000001-UUEK01000041
WGS_SCAFLD  NZ_UUEK01000001-NZ_UUEK01000041
//
LOCUS       NZ_UUEC01000000      5956938 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.B2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUEC00000000
VERSION     NZ_UUEC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472551
            Assembly: GCF_900588145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUEC00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUEC00000000.  This version of the project
            (01) has the accession number NZ_UUEC01000000, and consists of
            sequences UUEC01000001-UUEC01000038.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588145.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:57:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,385
            CDSs (total)                      :: 5,310
            Genes (coding)                    :: 5,229
            CDSs (with protein)               :: 5,229
            Genes (RNA)                       :: 75
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 14 of 81
            Pseudo Genes (incomplete)         :: 62 of 81
            Pseudo Genes (internal stop)      :: 14 of 81
            Pseudo Genes (multiple problems)  :: 9 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956938
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.B2"
                     /db_xref="taxon:33069"
WGS         UUEC01000001-UUEC01000038
WGS_SCAFLD  NZ_UUEC01000001-NZ_UUEC01000038
//
LOCUS       NZ_LYDY01000000      4570272 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain CDPH_C98, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LYDY00000000
VERSION     NZ_LYDY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04440979
            Assembly: GCF_001687865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4570272)
  AUTHORS   Kozyreva,V.K., Jospin,G., Greninger,A.L., Watt,J.P., Eisen,J.A. and
            Chaturvedi,V.
  TITLE     Recent Outbreaks of Shigellosis in California Caused by Two
            Distinct Populations of Shigella sonnei with either Increased
            Virulence or Fluoroquinolone Resistance
  JOURNAL   mSphere 1 (6), e00344-16 (2016)
   PUBMED   28028547
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4570272)
  AUTHORS   Kozyreva,V.K., Jospin,G., Greninger,A.L., Eisen,J.A. and
            Chaturvedi,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAY-2016) Microbial Disease Laboratory, California
            Department of Public Health, 850 Marina Bay Parkway, Richmond, CA
            94804, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LYDY00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_LYDY00000000.  This version of the project
            (01) has the accession number NZ_LYDY01000000, and consists of
            sequences LYDY01000001-LYDY01000460.
            Source DNA available from CDPH, MDL, 850 Marina Bay Parkway,
            Richmond, CA, 94804.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLCbio Genomic Workbench v. 8.0.2
            Genome Coverage       :: 67x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001687865.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:45:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,838
            CDSs (total)                      :: 4,747
            Genes (coding)                    :: 4,189
            CDSs (with protein)               :: 4,189
            Genes (RNA)                       :: 91
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 558
            CDSs (without protein)            :: 558
            Pseudo Genes (ambiguous residues) :: 0 of 558
            Pseudo Genes (frameshifted)       :: 161 of 558
            Pseudo Genes (incomplete)         :: 367 of 558
            Pseudo Genes (internal stop)      :: 93 of 558
            Pseudo Genes (multiple problems)  :: 59 of 558
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4570272
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="CDPH_C98"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="USA: Berkley, CA"
                     /collection_date="2007"
WGS         LYDY01000001-LYDY01000460
WGS_SCAFLD  NZ_LYDY01000001-NZ_LYDY01000460
//
LOCUS       NZ_UUOF01000000      5954568 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p4.C1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUOF00000000
VERSION     NZ_UUOF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472822
            Assembly: GCF_900590815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUOF00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUOF00000000.  This version of the project
            (01) has the accession number NZ_UUOF01000000, and consists of
            sequences UUOF01000001-UUOF01000151.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900590815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:53:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,429
            CDSs (total)                      :: 5,367
            Genes (coding)                    :: 5,244
            CDSs (with protein)               :: 5,244
            Genes (RNA)                       :: 62
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 34 of 123
            Pseudo Genes (incomplete)         :: 88 of 123
            Pseudo Genes (internal stop)      :: 13 of 123
            Pseudo Genes (multiple problems)  :: 9 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5954568
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p4.C1"
                     /db_xref="taxon:33069"
WGS         UUOF01000001-UUOF01000151
WGS_SCAFLD  NZ_UUOF01000001-NZ_UUOF01000151
//
LOCUS       NZ_LRSB01000000      4489957 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain CDPH_C10, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LRSB00000000
VERSION     NZ_LRSB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04440934
            Assembly: GCF_001688555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4489957)
  AUTHORS   Kozyreva,V.K., Jospin,G., Greninger,A.L., Watt,J.P., Eisen,J.A. and
            Chaturvedi,V.
  TITLE     Recent Outbreaks of Shigellosis in California Caused by Two
            Distinct Populations of Shigella sonnei with either Increased
            Virulence or Fluoroquinolone Resistance
  JOURNAL   mSphere 1 (6), e00344-16 (2016)
   PUBMED   28028547
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4489957)
  AUTHORS   Kozyreva,V.K., Greninger,A.L. and Chaturvedi,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2016) Microbial Disease Laboratory Branch,
            California Department of Public Health, 850 Marina Bay Parkway,
            Richmond, CA 94804, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LRSB00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_LRSB00000000.  This version of the project
            (01) has the accession number NZ_LRSB01000000, and consists of
            sequences LRSB01000001-LRSB01000506.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: CLCbio Genomic Workbench v. 8.0.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29.72x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001688555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:47:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,737
            CDSs (total)                      :: 4,641
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 96
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 4 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 550
            CDSs (without protein)            :: 550
            Pseudo Genes (ambiguous residues) :: 0 of 550
            Pseudo Genes (frameshifted)       :: 144 of 550
            Pseudo Genes (incomplete)         :: 358 of 550
            Pseudo Genes (internal stop)      :: 92 of 550
            Pseudo Genes (multiple problems)  :: 41 of 550
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4489957
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="CDPH_C10"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="USA: San Diego County, CA"
                     /collection_date="2014"
WGS         LRSB01000001-LRSB01000506
WGS_SCAFLD  NZ_LRSB01000001-NZ_LRSB01000506
//
LOCUS       NZ_UUFO01000000      5874524 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.F8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUFO00000000
VERSION     NZ_UUFO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472593
            Assembly: GCF_900588555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUFO00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUFO00000000.  This version of the project
            (01) has the accession number NZ_UUFO01000000, and consists of
            sequences UUFO01000001-UUFO01000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:55:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,292
            CDSs (total)                      :: 5,214
            Genes (coding)                    :: 5,131
            CDSs (with protein)               :: 5,131
            Genes (RNA)                       :: 78
            rRNAs                             :: 7, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 1, 6 (5S, 16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 21 of 83
            Pseudo Genes (incomplete)         :: 66 of 83
            Pseudo Genes (internal stop)      :: 10 of 83
            Pseudo Genes (multiple problems)  :: 13 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5874524
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.F8"
                     /db_xref="taxon:33069"
WGS         UUFO01000001-UUFO01000055
WGS_SCAFLD  NZ_UUFO01000001-NZ_UUFO01000055
//
LOCUS       NZ_UUDQ01000000      5981250 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.A7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUDQ00000000
VERSION     NZ_UUDQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472546
            Assembly: GCF_900588075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUDQ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUDQ00000000.  This version of the project
            (01) has the accession number NZ_UUDQ01000000, and consists of
            sequences UUDQ01000001-UUDQ01000059.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588075.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:58:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,362
            CDSs (total)                      :: 5,292
            Genes (coding)                    :: 5,209
            CDSs (with protein)               :: 5,209
            Genes (RNA)                       :: 70
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 13 of 83
            Pseudo Genes (incomplete)         :: 66 of 83
            Pseudo Genes (internal stop)      :: 11 of 83
            Pseudo Genes (multiple problems)  :: 7 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981250
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.A7"
                     /db_xref="taxon:33069"
WGS         UUDQ01000001-UUDQ01000059
WGS_SCAFLD  NZ_UUDQ01000001-NZ_UUDQ01000059
//
LOCUS       NZ_LRSC01000000      4489957 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain CDPH_C11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LRSC00000000
VERSION     NZ_LRSC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04440935
            Assembly: GCF_001688585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4489957)
  AUTHORS   Kozyreva,V.K., Jospin,G., Greninger,A.L., Watt,J.P., Eisen,J.A. and
            Chaturvedi,V.
  TITLE     Recent Outbreaks of Shigellosis in California Caused by Two
            Distinct Populations of Shigella sonnei with either Increased
            Virulence or Fluoroquinolone Resistance
  JOURNAL   mSphere 1 (6), e00344-16 (2016)
   PUBMED   28028547
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4489957)
  AUTHORS   Kozyreva,V.K., Greninger,A.L. and Chaturvedi,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2016) Microbial Disease Laboratory Branch,
            California Department of Public Health, 850 Marina Bay Parkway,
            Richmond, CA 94804, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LRSC00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_LRSC00000000.  This version of the project
            (01) has the accession number NZ_LRSC01000000, and consists of
            sequences LRSC01000001-LRSC01000506.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: CLCbio Genomic Workbench v. 8.0.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31.72x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001688585.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:51:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,737
            CDSs (total)                      :: 4,641
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 96
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 4 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 550
            CDSs (without protein)            :: 550
            Pseudo Genes (ambiguous residues) :: 0 of 550
            Pseudo Genes (frameshifted)       :: 144 of 550
            Pseudo Genes (incomplete)         :: 358 of 550
            Pseudo Genes (internal stop)      :: 92 of 550
            Pseudo Genes (multiple problems)  :: 41 of 550
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4489957
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="CDPH_C11"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="USA: Riverside County, CA"
                     /collection_date="2014"
WGS         LRSC01000001-LRSC01000506
WGS_SCAFLD  NZ_LRSC01000001-NZ_LRSC01000506
//
LOCUS       NZ_UWAH01000000      5951475 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p7.B3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UWAH00000000
VERSION     NZ_UWAH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104473055
            Assembly: GCF_900600695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UWAH00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UWAH00000000.  This version of the project
            (01) has the accession number NZ_UWAH01000000, and consists of
            sequences UWAH01000001-UWAH01000057.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900600695.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:52:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,313
            CDSs (total)                      :: 5,238
            Genes (coding)                    :: 5,145
            CDSs (with protein)               :: 5,145
            Genes (RNA)                       :: 75
            rRNAs                             :: 6, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 23 of 93
            Pseudo Genes (incomplete)         :: 69 of 93
            Pseudo Genes (internal stop)      :: 11 of 93
            Pseudo Genes (multiple problems)  :: 10 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5951475
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p7.B3"
                     /db_xref="taxon:33069"
WGS         UWAH01000001-UWAH01000057
WGS_SCAFLD  NZ_UWAH01000001-NZ_UWAH01000057
//
LOCUS       NZ_LRSD01000000      4513600 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain CDPH_C12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LRSD00000000
VERSION     NZ_LRSD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04440936
            Assembly: GCF_001688605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4513600)
  AUTHORS   Kozyreva,V.K., Jospin,G., Greninger,A.L., Watt,J.P., Eisen,J.A. and
            Chaturvedi,V.
  TITLE     Recent Outbreaks of Shigellosis in California Caused by Two
            Distinct Populations of Shigella sonnei with either Increased
            Virulence or Fluoroquinolone Resistance
  JOURNAL   mSphere 1 (6), e00344-16 (2016)
   PUBMED   28028547
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4513600)
  AUTHORS   Kozyreva,V.K., Greninger,A.L. and Chaturvedi,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2016) Microbial Disease Laboratory Branch,
            California Department of Public Health, 850 Marina Bay Parkway,
            Richmond, CA 94804, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LRSD00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_LRSD00000000.  This version of the project
            (01) has the accession number NZ_LRSD01000000, and consists of
            sequences LRSD01000001-LRSD01000509.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: CLCbio Genomic Workbench v. 8.0.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35.15x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001688605.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:55:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,795
            CDSs (total)                      :: 4,694
            Genes (coding)                    :: 4,145
            CDSs (with protein)               :: 4,145
            Genes (RNA)                       :: 101
            rRNAs                             :: 4, 5, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 1, 5, 1 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 549
            CDSs (without protein)            :: 549
            Pseudo Genes (ambiguous residues) :: 0 of 549
            Pseudo Genes (frameshifted)       :: 150 of 549
            Pseudo Genes (incomplete)         :: 358 of 549
            Pseudo Genes (internal stop)      :: 93 of 549
            Pseudo Genes (multiple problems)  :: 49 of 549
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4513600
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="CDPH_C12"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="USA: San Diego County, CA"
                     /collection_date="2014"
WGS         LRSD01000001-LRSD01000509
WGS_SCAFLD  NZ_LRSD01000001-NZ_LRSD01000509
//
LOCUS       NZ_NCQX01000000      4056183 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP273, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NCQX00000000
VERSION     NZ_NCQX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06698958
            Assembly: GCF_002894575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4056183)
  AUTHORS   Viver,T.
  TITLE     Salinibacter altiplanicus sp. nov., a novel member of Salinibacter
            genus
  JOURNAL   Syst. Appl. Microbiol. (2018) In press
REFERENCE   2  (bases 1 to 4056183)
  AUTHORS   Viver,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2017) Microbiology, IMEDEA, C/ Miquel Marques,
            Esporles 07190, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NCQX00000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_NCQX00000000.  This version of the project
            (01) has the accession number NZ_NCQX01000000, and consists of
            sequences NCQX01000001-NCQX01000219.
            Bacteria and source DNA available from CECT 9122.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 77.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002894575.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:10:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,483
            CDSs (total)                      :: 3,433
            Genes (coding)                    :: 3,343
            CDSs (with protein)               :: 3,343
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 12 of 90
            Pseudo Genes (incomplete)         :: 79 of 90
            Pseudo Genes (internal stop)      :: 6 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4056183
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP273"
                     /isolation_source="Brines"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain: Alicante"
                     /collection_date="2010"
WGS         NCQX01000001-NCQX01000219
WGS_SCAFLD  NZ_NCQX01000001-NZ_NCQX01000219
//
LOCUS       NZ_FUEE01000000      4578215 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1480, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUEE00000000
VERSION     NZ_FUEE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569673
            Assembly: GCF_900160635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUEE00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUEE00000000.  This version of the project
            (01) has the accession number NZ_FUEE01000000, and consists of
            sequences FUEE01000001-FUEE01000358.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:01:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,842
            CDSs (total)                      :: 4,742
            Genes (coding)                    :: 4,184
            CDSs (with protein)               :: 4,184
            Genes (RNA)                       :: 100
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 558
            CDSs (without protein)            :: 558
            Pseudo Genes (ambiguous residues) :: 0 of 558
            Pseudo Genes (frameshifted)       :: 131 of 558
            Pseudo Genes (incomplete)         :: 390 of 558
            Pseudo Genes (internal stop)      :: 88 of 558
            Pseudo Genes (multiple problems)  :: 47 of 558
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578215
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1480"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2008"
WGS         FUEE01000001-FUEE01000358
WGS_SCAFLD  NZ_FUEE01000001-NZ_FUEE01000358
//
LOCUS       NZ_UULS01000000      5985035 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p3.C2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UULS00000000
VERSION     NZ_UULS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472748
            Assembly: GCF_900590145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UULS00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UULS00000000.  This version of the project
            (01) has the accession number NZ_UULS01000000, and consists of
            sequences UULS01000001-UULS01000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900590145.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:06:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,364
            CDSs (total)                      :: 5,290
            Genes (coding)                    :: 5,210
            CDSs (with protein)               :: 5,210
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 13 of 80
            Pseudo Genes (incomplete)         :: 63 of 80
            Pseudo Genes (internal stop)      :: 11 of 80
            Pseudo Genes (multiple problems)  :: 7 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5985035
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p3.C2"
                     /db_xref="taxon:33069"
WGS         UULS01000001-UULS01000055
WGS_SCAFLD  NZ_UULS01000001-NZ_UULS01000055
//
LOCUS       NZ_UUOU01000000      5982247 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p4.D6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUOU00000000
VERSION     NZ_UUOU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472836
            Assembly: GCF_900590975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUOU00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUOU00000000.  This version of the project
            (01) has the accession number NZ_UUOU01000000, and consists of
            sequences UUOU01000001-UUOU01000041.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900590975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:09:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,357
            CDSs (total)                      :: 5,281
            Genes (coding)                    :: 5,200
            CDSs (with protein)               :: 5,200
            Genes (RNA)                       :: 76
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 2 (5S, 16S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 14 of 81
            Pseudo Genes (incomplete)         :: 64 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 8 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982247
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p4.D6"
                     /db_xref="taxon:33069"
WGS         UUOU01000001-UUOU01000041
WGS_SCAFLD  NZ_UUOU01000001-NZ_UUOU01000041
//
LOCUS       NZ_FTVF01000000      4601131 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461848, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTVF00000000
VERSION     NZ_FTVF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054575
            Assembly: GCF_900158325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTVF00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTVF00000000.  This version of the project
            (01) has the accession number NZ_FTVF01000000, and consists of
            sequences FTVF01000001-FTVF01000342.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158325.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:13:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,846
            CDSs (total)                      :: 4,748
            Genes (coding)                    :: 4,195
            CDSs (with protein)               :: 4,195
            Genes (RNA)                       :: 98
            rRNAs                             :: 4, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 81
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 553
            CDSs (without protein)            :: 553
            Pseudo Genes (ambiguous residues) :: 0 of 553
            Pseudo Genes (frameshifted)       :: 127 of 553
            Pseudo Genes (incomplete)         :: 389 of 553
            Pseudo Genes (internal stop)      :: 86 of 553
            Pseudo Genes (multiple problems)  :: 46 of 553
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4601131
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461848"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Uruguay"
                     /collection_date="2010"
WGS         FTVF01000001-FTVF01000342
WGS_SCAFLD  NZ_FTVF01000001-NZ_FTVF01000342
//
LOCUS       NZ_FUCQ01000000      4605582 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1439, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUCQ00000000
VERSION     NZ_FUCQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1570034
            Assembly: GCF_900160245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUCQ00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUCQ00000000.  This version of the project
            (01) has the accession number NZ_FUCQ01000000, and consists of
            sequences FUCQ01000001-FUCQ01000378.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160245.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:12:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,939
            CDSs (total)                      :: 4,833
            Genes (coding)                    :: 4,279
            CDSs (with protein)               :: 4,279
            Genes (RNA)                       :: 106
            rRNAs                             :: 7, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 554
            CDSs (without protein)            :: 554
            Pseudo Genes (ambiguous residues) :: 0 of 554
            Pseudo Genes (frameshifted)       :: 132 of 554
            Pseudo Genes (incomplete)         :: 391 of 554
            Pseudo Genes (internal stop)      :: 79 of 554
            Pseudo Genes (multiple problems)  :: 44 of 554
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4605582
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1439"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Argentina"
                     /collection_date="2009"
WGS         FUCQ01000001-FUCQ01000378
WGS_SCAFLD  NZ_FUCQ01000001-NZ_FUCQ01000378
//
LOCUS       NZ_SLVM01000000      3665949 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhodovulum steppense strain DSM 21153, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLVM00000000
VERSION     NZ_SLVM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10864697
            Assembly: GCF_004339675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhodovulum steppense
  ORGANISM  Rhodovulum steppense
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Paracoccaceae; Rhodovulum.
REFERENCE   1  (bases 1 to 3665949)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3665949)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLVM00000000.1.
            The Rhodovulum steppense whole genome shotgun (WGS) project has the
            project accession NZ_SLVM00000000.  This version of the project
            (01) has the accession number NZ_SLVM01000000, and consists of
            sequences SLVM01000001-SLVM01000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 409.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004339675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:17:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,664
            CDSs (total)                      :: 3,612
            Genes (coding)                    :: 3,538
            CDSs (with protein)               :: 3,538
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 22 of 74
            Pseudo Genes (incomplete)         :: 63 of 74
            Pseudo Genes (internal stop)      :: 7 of 74
            Pseudo Genes (multiple problems)  :: 17 of 74
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665949
                     /organism="Rhodovulum steppense"
                     /mol_type="genomic DNA"
                     /strain="DSM 21153"
                     /culture_collection="DSM:21153"
                     /type_material="type strain of Rhodovulum steppense"
                     /db_xref="taxon:540251"
WGS         SLVM01000001-SLVM01000071
WGS_SCAFLD  NZ_SLVM01000001-NZ_SLVM01000071
//
LOCUS       NZ_FUCZ01000000      4645903 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1450, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUCZ00000000
VERSION     NZ_FUCZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569943
            Assembly: GCF_900160355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUCZ00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUCZ00000000.  This version of the project
            (01) has the accession number NZ_FUCZ01000000, and consists of
            sequences FUCZ01000001-FUCZ01000358.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160355.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:10:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,939
            CDSs (total)                      :: 4,837
            Genes (coding)                    :: 4,284
            CDSs (with protein)               :: 4,284
            Genes (RNA)                       :: 102
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 553
            CDSs (without protein)            :: 553
            Pseudo Genes (ambiguous residues) :: 0 of 553
            Pseudo Genes (frameshifted)       :: 132 of 553
            Pseudo Genes (incomplete)         :: 387 of 553
            Pseudo Genes (internal stop)      :: 89 of 553
            Pseudo Genes (multiple problems)  :: 51 of 553
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645903
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1450"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2002"
WGS         FUCZ01000001-FUCZ01000358
WGS_SCAFLD  NZ_FUCZ01000001-NZ_FUCZ01000358
//
LOCUS       NZ_SLZR01000000      4230035 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Reinekea marinisedimentorum strain DSM 15388, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLZR00000000
VERSION     NZ_SLZR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10984411
            Assembly: GCF_004341165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Reinekea marinisedimentorum
  ORGANISM  Reinekea marinisedimentorum
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Oceanospirillales; Saccharospirillaceae; Reinekea.
REFERENCE   1  (bases 1 to 4230035)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase
            II (KMG-II): from individual species to whole genera
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4230035)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLZR00000000.1.
            The Reinekea marinisedimentorum whole genome shotgun (WGS) project
            has the project accession NZ_SLZR00000000.  This version of the
            project (01) has the accession number NZ_SLZR01000000, and consists
            of sequences SLZR01000001-SLZR01000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341165.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:19:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,839
            CDSs (total)                      :: 3,784
            Genes (coding)                    :: 3,769
            CDSs (with protein)               :: 3,769
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            Pseudo Genes (multiple problems)  :: 1 of 15
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4230035
                     /organism="Reinekea marinisedimentorum"
                     /mol_type="genomic DNA"
                     /strain="DSM 15388"
                     /culture_collection="DSM:15388"
                     /type_material="type strain of Reinekea
                     marinisedimentorum"
                     /db_xref="taxon:230495"
                     /geo_loc_name="Russia: Reineke Island, Peter the Great
                     Bay, Sea of Japan"
WGS         SLZR01000001-SLZR01000062
WGS_SCAFLD  NZ_SLZR01000001-NZ_SLZR01000062
//
LOCUS       NZ_FTUT01000000      4712993 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461836, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTUT00000000
VERSION     NZ_FTUT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054564
            Assembly: GCF_900158225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTUT00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTUT00000000.  This version of the project
            (01) has the accession number NZ_FTUT01000000, and consists of
            sequences FTUT01000001-FTUT01000349.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158225.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:16:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,998
            CDSs (total)                      :: 4,889
            Genes (coding)                    :: 4,332
            CDSs (with protein)               :: 4,332
            Genes (RNA)                       :: 109
            rRNAs                             :: 5, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 557
            CDSs (without protein)            :: 557
            Pseudo Genes (ambiguous residues) :: 0 of 557
            Pseudo Genes (frameshifted)       :: 131 of 557
            Pseudo Genes (incomplete)         :: 394 of 557
            Pseudo Genes (internal stop)      :: 84 of 557
            Pseudo Genes (multiple problems)  :: 48 of 557
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4712993
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461836"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Uruguay"
                     /collection_date="2004"
WGS         FTUT01000001-FTUT01000349
WGS_SCAFLD  NZ_FTUT01000001-NZ_FTUT01000349
//
LOCUS       NZ_FTUO01000000      4578944 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461828, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTUO00000000
VERSION     NZ_FTUO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054556
            Assembly: GCF_900158135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTUO00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTUO00000000.  This version of the project
            (01) has the accession number NZ_FTUO01000000, and consists of
            sequences FTUO01000001-FTUO01000368.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:13:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,822
            CDSs (total)                      :: 4,728
            Genes (coding)                    :: 4,174
            CDSs (with protein)               :: 4,174
            Genes (RNA)                       :: 94
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 79
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 554
            CDSs (without protein)            :: 554
            Pseudo Genes (ambiguous residues) :: 0 of 554
            Pseudo Genes (frameshifted)       :: 129 of 554
            Pseudo Genes (incomplete)         :: 383 of 554
            Pseudo Genes (internal stop)      :: 86 of 554
            Pseudo Genes (multiple problems)  :: 42 of 554
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578944
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461828"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Uruguay"
                     /collection_date="2002"
WGS         FTUO01000001-FTUO01000368
WGS_SCAFLD  NZ_FTUO01000001-NZ_FTUO01000368
//
LOCUS       NZ_SLWW01000000      3789116 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhodovulum euryhalinum strain DSM 4868, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLWW00000000
VERSION     NZ_SLWW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866311
            Assembly: GCF_004342445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhodovulum euryhalinum
  ORGANISM  Rhodovulum euryhalinum
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Paracoccaceae; Rhodovulum.
REFERENCE   1  (bases 1 to 3789116)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3789116)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLWW00000000.1.
            The Rhodovulum euryhalinum whole genome shotgun (WGS) project has
            the project accession NZ_SLWW00000000.  This version of the project
            (01) has the accession number NZ_SLWW01000000, and consists of
            sequences SLWW01000001-SLWW01000044.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 396.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342445.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:19:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,728
            CDSs (total)                      :: 3,678
            Genes (coding)                    :: 3,637
            CDSs (with protein)               :: 3,637
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 7 of 41
            Pseudo Genes (incomplete)         :: 37 of 41
            Pseudo Genes (internal stop)      :: 4 of 41
            Pseudo Genes (multiple problems)  :: 5 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3789116
                     /organism="Rhodovulum euryhalinum"
                     /mol_type="genomic DNA"
                     /strain="DSM 4868"
                     /culture_collection="DSM:4868"
                     /type_material="type strain of Rhodobacter euryhalinus"
                     /db_xref="taxon:35805"
WGS         SLWW01000001-SLWW01000044
WGS_SCAFLD  NZ_SLWW01000001-NZ_SLWW01000044
//
LOCUS       NZ_FUDB01000000      4709680 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1449, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUDB00000000
VERSION     NZ_FUDB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569930
            Assembly: GCF_900160345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUDB00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUDB00000000.  This version of the project
            (01) has the accession number NZ_FUDB01000000, and consists of
            sequences FUDB01000001-FUDB01000365.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160345.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:09:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,063
            CDSs (total)                      :: 4,961
            Genes (coding)                    :: 4,402
            CDSs (with protein)               :: 4,402
            Genes (RNA)                       :: 102
            rRNAs                             :: 7, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 1 (5S, 16S)
            tRNAs                             :: 82
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 559
            CDSs (without protein)            :: 559
            Pseudo Genes (ambiguous residues) :: 0 of 559
            Pseudo Genes (frameshifted)       :: 139 of 559
            Pseudo Genes (incomplete)         :: 391 of 559
            Pseudo Genes (internal stop)      :: 83 of 559
            Pseudo Genes (multiple problems)  :: 49 of 559
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709680
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1449"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2002"
WGS         FUDB01000001-FUDB01000365
WGS_SCAFLD  NZ_FUDB01000001-NZ_FUDB01000365
//
LOCUS       NZ_FUDN01000000      4604839 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1463, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUDN00000000
VERSION     NZ_FUDN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569792
            Assembly: GCF_900160475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUDN00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUDN00000000.  This version of the project
            (01) has the accession number NZ_FUDN01000000, and consists of
            sequences FUDN01000001-FUDN01000360.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:16:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,902
            CDSs (total)                      :: 4,799
            Genes (coding)                    :: 4,238
            CDSs (with protein)               :: 4,238
            Genes (RNA)                       :: 103
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 561
            CDSs (without protein)            :: 561
            Pseudo Genes (ambiguous residues) :: 0 of 561
            Pseudo Genes (frameshifted)       :: 135 of 561
            Pseudo Genes (incomplete)         :: 396 of 561
            Pseudo Genes (internal stop)      :: 82 of 561
            Pseudo Genes (multiple problems)  :: 46 of 561
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4604839
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1463"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2004"
WGS         FUDN01000001-FUDN01000360
WGS_SCAFLD  NZ_FUDN01000001-NZ_FUDN01000360
//
LOCUS       NZ_FTTQ01000000      4646205 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461752, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTTQ00000000
VERSION     NZ_FTTQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054227
            Assembly: GCF_900157835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTTQ00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTTQ00000000.  This version of the project
            (01) has the accession number NZ_FTTQ01000000, and consists of
            sequences FTTQ01000001-FTTQ01000442.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900157835.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:16:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,982
            CDSs (total)                      :: 4,886
            Genes (coding)                    :: 4,335
            CDSs (with protein)               :: 4,335
            Genes (RNA)                       :: 96
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 551
            CDSs (without protein)            :: 551
            Pseudo Genes (ambiguous residues) :: 0 of 551
            Pseudo Genes (frameshifted)       :: 122 of 551
            Pseudo Genes (incomplete)         :: 397 of 551
            Pseudo Genes (internal stop)      :: 78 of 551
            Pseudo Genes (multiple problems)  :: 43 of 551
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4646205
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461752"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Colombia"
                     /collection_date="1900/2016"
WGS         FTTQ01000001-FTTQ01000442
WGS_SCAFLD  NZ_FTTQ01000001-NZ_FTTQ01000442
//
LOCUS       NZ_SMBU01000000      5770922 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Roseateles saccharophilus strain DSM 654, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMBU00000000
VERSION     NZ_SMBU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866328
            Assembly: GCF_004342485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Roseateles saccharophilus
  ORGANISM  Roseateles saccharophilus
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Sphaerotilaceae; Roseateles.
REFERENCE   1  (bases 1 to 5770922)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5770922)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMBU00000000.1.
            The Roseateles saccharophilus whole genome shotgun (WGS) project
            has the project accession NZ_SMBU00000000.  This version of the
            project (01) has the accession number NZ_SMBU01000000, and consists
            of sequences SMBU01000001-SMBU01000108.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 260.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:51:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,397
            CDSs (total)                      :: 5,335
            Genes (coding)                    :: 5,257
            CDSs (with protein)               :: 5,257
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 56
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 14 of 78
            Pseudo Genes (incomplete)         :: 64 of 78
            Pseudo Genes (internal stop)      :: 6 of 78
            Pseudo Genes (multiple problems)  :: 5 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5770922
                     /organism="Roseateles saccharophilus"
                     /mol_type="genomic DNA"
                     /strain="DSM 654"
                     /culture_collection="DSM:654"
                     /type_material="type strain of Pseudomonas saccharophila"
                     /db_xref="taxon:304"
WGS         SMBU01000001-SMBU01000108
WGS_SCAFLD  NZ_SMBU01000001-NZ_SMBU01000108
//
LOCUS       NZ_FUDC01000000      4544293 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1451, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUDC00000000
VERSION     NZ_FUDC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569914
            Assembly: GCF_900160365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUDC00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUDC00000000.  This version of the project
            (01) has the accession number NZ_FUDC01000000, and consists of
            sequences FUDC01000001-FUDC01000351.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160365.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:13:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,823
            CDSs (total)                      :: 4,720
            Genes (coding)                    :: 4,165
            CDSs (with protein)               :: 4,165
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 555
            CDSs (without protein)            :: 555
            Pseudo Genes (ambiguous residues) :: 0 of 555
            Pseudo Genes (frameshifted)       :: 128 of 555
            Pseudo Genes (incomplete)         :: 388 of 555
            Pseudo Genes (internal stop)      :: 90 of 555
            Pseudo Genes (multiple problems)  :: 46 of 555
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4544293
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1451"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2002"
WGS         FUDC01000001-FUDC01000351
WGS_SCAFLD  NZ_FUDC01000001-NZ_FUDC01000351
//
LOCUS       NZ_FTVC01000000      4610888 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461846, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTVC00000000
VERSION     NZ_FTVC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054573
            Assembly: GCF_900158305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTVC00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTVC00000000.  This version of the project
            (01) has the accession number NZ_FTVC01000000, and consists of
            sequences FTVC01000001-FTVC01000342.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:15:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,848
            CDSs (total)                      :: 4,740
            Genes (coding)                    :: 4,186
            CDSs (with protein)               :: 4,186
            Genes (RNA)                       :: 108
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 554
            CDSs (without protein)            :: 554
            Pseudo Genes (ambiguous residues) :: 0 of 554
            Pseudo Genes (frameshifted)       :: 130 of 554
            Pseudo Genes (incomplete)         :: 386 of 554
            Pseudo Genes (internal stop)      :: 90 of 554
            Pseudo Genes (multiple problems)  :: 48 of 554
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4610888
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461846"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Uruguay"
                     /collection_date="2009"
WGS         FTVC01000001-FTVC01000342
WGS_SCAFLD  NZ_FTVC01000001-NZ_FTVC01000342
//
LOCUS       NZ_SMFZ01000000      7567994 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudonocardia endophytica strain DSM 44969, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMFZ00000000
VERSION     NZ_SMFZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866048
            Assembly: GCF_004339565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudonocardia endophytica
  ORGANISM  Pseudonocardia endophytica
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.
REFERENCE   1  (bases 1 to 7567994)
  AUTHORS   Klenk,H.-P.
  TITLE     Sequencing the genomes of 1000 actinobacteria strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7567994)
  AUTHORS   Klenk,H.-P., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMFZ00000000.1.
            The Pseudonocardia endophytica whole genome shotgun (WGS) project
            has the project accession NZ_SMFZ00000000.  This version of the
            project (01) has the accession number NZ_SMFZ01000000, and consists
            of sequences SMFZ01000001-SMFZ01000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtlink/6.0.0.45580, HGAP 4
                                      (0.2.1)
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 342.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004339565.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:06:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,071
            CDSs (total)                      :: 7,012
            Genes (coding)                    :: 6,954
            CDSs (with protein)               :: 6,954
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 5 of 58
            Pseudo Genes (incomplete)         :: 56 of 58
            Pseudo Genes (internal stop)      :: 2 of 58
            Pseudo Genes (multiple problems)  :: 5 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7567994
                     /organism="Pseudonocardia endophytica"
                     /mol_type="genomic DNA"
                     /strain="DSM 44969"
                     /culture_collection="DSM:44969"
                     /type_material="type strain of Pseudonocardia endophytica"
                     /db_xref="taxon:401976"
                     /geo_loc_name="China: Yunnan Province, Xishuangbanna"
WGS         SMFZ01000001-SMFZ01000002
WGS_SCAFLD  NZ_SMFZ01000001-NZ_SMFZ01000002
//
LOCUS       NZ_SKBU01000000      3035068 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rubrobacter taiwanensis strain Yellowstone, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SKBU00000000
VERSION     NZ_SKBU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11042140
            Assembly: GCF_004337705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rubrobacter taiwanensis
  ORGANISM  Rubrobacter taiwanensis
            Bacteria; Bacillati; Actinomycetota; Rubrobacteria;
            Rubrobacterales; Rubrobacteraceae; Rubrobacter.
REFERENCE   1  (bases 1 to 3035068)
  AUTHORS   Freed,S., Ramaley,R.F. and Kyndt,J.A.
  TITLE     Whole genome sequence of a novel Rubrobacter taiwanensis strain,
            isolated from Yellowstone National Park
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3035068)
  AUTHORS   Freed,S., Ramaley,R.F. and Kyndt,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2019) College of Science and Technology, Bellevue
            University, 1000 Galvin Rd South, LCN 559, Bellevue, NE 68005, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SKBU00000000.1.
            The Rubrobacter taiwanensis whole genome shotgun (WGS) project has
            the project accession NZ_SKBU00000000.  This version of the project
            (01) has the accession number NZ_SKBU01000000, and consists of
            sequences SKBU01000001-SKBU01000057.
            Bacteria and source DNA available from Dr. Robert Ramaley, 985870
            Nebraska Medical Center Durham Research Center I, Department of
            Biochemistry and Molecular Biology, UNMC, Omaha, NE 68198.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 24-DEC-2018
            Assembly Method        :: Velvet de novo v. 2018-12-24
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004337705.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:25:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,167
            CDSs (total)                      :: 3,114
            Genes (coding)                    :: 3,085
            CDSs (with protein)               :: 3,085
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 8 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 3 of 29
            Pseudo Genes (multiple problems)  :: 1 of 29
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035068
                     /organism="Rubrobacter taiwanensis"
                     /mol_type="genomic DNA"
                     /strain="Yellowstone"
                     /db_xref="taxon:185139"
                     /geo_loc_name="USA: Yellowstone National Park"
                     /lat_lon="44.5387 N 110.798 W"
                     /collection_date="2015"
                     /collected_by="Dr. Robert Ramaley"
WGS         SKBU01000001-SKBU01000057
WGS_SCAFLD  NZ_SKBU01000001-NZ_SKBU01000057
//
LOCUS       NZ_JZWJ01000000      5170388 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella xiamenensis strain T17, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JZWJ00000000
VERSION     NZ_JZWJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03397547
            Assembly: GCF_002074855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella xiamenensis
  ORGANISM  Shewanella xiamenensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 5170388)
  AUTHORS   Yousfi,K., Touati,A., Lefebvre,B., Fournier,E., Cote,J.C.,
            Soualhine,H., Walker,M., Bougdour,D., Tremblay,C. and Bekal,S.
  TITLE     A Novel Plasmid, pSx1, Harboring a New Tn1696 Derivative from
            Extensively Drug-Resistant Shewanella xiamenensis Encoding OXA-416
  JOURNAL   Microb Drug Resist 23 (4), 429-436 (2017)
   PUBMED   27505638
REFERENCE   2  (bases 1 to 5170388)
  AUTHORS   Yousfi,K., Touati,A., Lefebvre,B., Fournier,E., Walker,M.,
            Reimer,A., Bougdour,D. and Bekal,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) Bacteriology, Laboratoire de Sante Publique
            du Quebec, 20045 Sainte-Marie, Sainte-Anne-de-Bellevue, Quebec H9X
            3R5, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JZWJ00000000.1.
            The Shewanella xiamenensis whole genome shotgun (WGS) project has
            the project accession NZ_JZWJ00000000.  This version of the project
            (01) has the accession number NZ_JZWJ01000000, and consists of
            sequences JZWJ01000001-JZWJ01000212.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2014
            Assembly Method        :: Spades v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002074855.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:34:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,746
            CDSs (total)                      :: 4,617
            Genes (coding)                    :: 4,487
            CDSs (with protein)               :: 4,487
            Genes (RNA)                       :: 129
            rRNAs                             :: 11, 12, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 10 (5S)
            partial rRNAs                     :: 1, 12, 5 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 10 of 130
            Pseudo Genes (incomplete)         :: 118 of 130
            Pseudo Genes (internal stop)      :: 10 of 130
            Pseudo Genes (multiple problems)  :: 6 of 130
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5170388
                     /organism="Shewanella xiamenensis"
                     /mol_type="genomic DNA"
                     /strain="T17"
                     /isolation_source="hospital effleunts"
                     /db_xref="taxon:332186"
                     /geo_loc_name="Algeria: Tizi Ouzou"
                     /lat_lon="36.71 N 4.04 E"
                     /collection_date="2012"
                     /collected_by="Khadidja Yousfi"
WGS         JZWJ01000001-JZWJ01000212
WGS_SCAFLD  NZ_JZWJ01000001-NZ_JZWJ01000212
//
LOCUS       NZ_SLXO01000000      3358562 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhodothalassium salexigens DSM 2132, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLXO00000000
VERSION     NZ_SLXO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866323
            Assembly: GCF_004341375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhodothalassium salexigens DSM 2132
  ORGANISM  Rhodothalassium salexigens DSM 2132
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodothalassiales; Rhodothalassiaceae; Rhodothalassium.
REFERENCE   1  (bases 1 to 3358562)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3358562)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLXO00000000.1.
            The Rhodothalassium salexigens DSM 2132 whole genome shotgun (WGS)
            project has the project accession NZ_SLXO00000000.  This version of
            the project (01) has the accession number NZ_SLXO01000000, and
            consists of sequences SLXO01000001-SLXO01000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 446.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:32:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,943
            CDSs (total)                      :: 2,891
            Genes (coding)                    :: 2,849
            CDSs (with protein)               :: 2,849
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 42
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 9 of 42
            Pseudo Genes (incomplete)         :: 35 of 42
            Pseudo Genes (internal stop)      :: 3 of 42
            Pseudo Genes (multiple problems)  :: 4 of 42
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3358562
                     /organism="Rhodothalassium salexigens DSM 2132"
                     /mol_type="genomic DNA"
                     /strain="DSM 2132"
                     /culture_collection="DSM:2132"
                     /type_material="type strain of Rhodospirillum salexigens"
                     /db_xref="taxon:1188247"
WGS         SLXO01000001-SLXO01000023
WGS_SCAFLD  NZ_SLXO01000001-NZ_SLXO01000023
//
LOCUS       NZ_FUCU01000000      4666976 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1442, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUCU00000000
VERSION     NZ_FUCU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569859
            Assembly: GCF_900160275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUCU00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUCU00000000.  This version of the project
            (01) has the accession number NZ_FUCU01000000, and consists of
            sequences FUCU01000001-FUCU01000356.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160275.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:42:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,962
            CDSs (total)                      :: 4,857
            Genes (coding)                    :: 4,305
            CDSs (with protein)               :: 4,305
            Genes (RNA)                       :: 105
            rRNAs                             :: 7, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 5, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 552
            CDSs (without protein)            :: 552
            Pseudo Genes (ambiguous residues) :: 0 of 552
            Pseudo Genes (frameshifted)       :: 129 of 552
            Pseudo Genes (incomplete)         :: 393 of 552
            Pseudo Genes (internal stop)      :: 87 of 552
            Pseudo Genes (multiple problems)  :: 52 of 552
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4666976
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1442"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Argentina"
                     /collection_date="2004"
WGS         FUCU01000001-FUCU01000356
WGS_SCAFLD  NZ_FUCU01000001-NZ_FUCU01000356
//
LOCUS       NZ_JANUAW010000000   4032393 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain 0,05.61, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUAW000000000
VERSION     NZ_JANUAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13166359
            Assembly: GCF_024809595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4032393)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4032393)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUAW000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUAW000000000.  This version of the project
            (01) has the accession number NZ_JANUAW010000000, and consists of
            sequences JANUAW010000001-JANUAW010000038.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 335.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024809595.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:43:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,330
            CDSs (total)                      :: 3,278
            Genes (coding)                    :: 3,250
            CDSs (with protein)               :: 3,250
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 6 of 28
            Pseudo Genes (incomplete)         :: 21 of 28
            Pseudo Genes (internal stop)      :: 5 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4032393
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="0,05.61"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUAW010000001-JANUAW010000038
WGS_SCAFLD  NZ_JANUAW010000001-NZ_JANUAW010000038
//
LOCUS       NZ_JAFELR010000000   2120560 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Riemerella anatipestifer strain RCAD1083, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFELR000000000
VERSION     NZ_JAFELR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17817045
            Assembly: GCF_037861535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Riemerella anatipestifer
  ORGANISM  Riemerella anatipestifer
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Weeksellaceae; Riemerella.
REFERENCE   1  (bases 1 to 2120560)
  AUTHORS   Yang,Z., Lu,J., Zhu,D. and Wang,M.
  TITLE     Adaptability characteristics of respiratory tract isolates of
            Riemerella anatipestifer
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2120560)
  AUTHORS   Yang,Z., Lu,J., Zhu,D. and Wang,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2021) College of Veterinary Medicine, Sichuan
            Agricultural University, No. 211, Huimin Road, Chengdu, Sichuan
            611130, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFELR000000000.1.
            The Riemerella anatipestifer whole genome shotgun (WGS) project has
            the project accession NZ_JAFELR000000000.  This version of the
            project (01) has the accession number NZ_JAFELR010000000, and
            consists of sequences JAFELR010000001-JAFELR010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-JAN-2021
            Assembly Method        :: SPAdes v. v3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037861535.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:54:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,016
            CDSs (total)                      :: 1,969
            Genes (coding)                    :: 1,936
            CDSs (with protein)               :: 1,936
            Genes (RNA)                       :: 47
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 10 of 33
            Pseudo Genes (incomplete)         :: 24 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 4 of 33
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120560
                     /organism="Riemerella anatipestifer"
                     /mol_type="genomic DNA"
                     /strain="RCAD1083"
                     /isolation_source="throat"
                     /host="duck"
                     /db_xref="taxon:34085"
                     /geo_loc_name="China: Sichuan,Dujiangyan"
                     /lat_lon="30.994257 N 103.653534 E"
                     /collection_date="2020-08-25"
                     /collected_by="Research Center of Avian Diseases, College
                     of Veterinary Medicine, Sichuan Agricultural University,
                     Chengdu, Sichuan, 611130, China"
WGS         JAFELR010000001-JAFELR010000027
WGS_SCAFLD  NZ_JAFELR010000001-NZ_JAFELR010000027
//
LOCUS       NZ_PSSS01000000      4738998 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella boydii strain ATCC 35966, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PSSS00000000
VERSION     NZ_PSSS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN01916630
            Assembly: GCF_002968175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4738998)
  AUTHORS   Kim,J.Y., Lindsey,R.L., Garcia-Toledo,L., Loparev,V.N., Rowe,L.A.,
            Batra,D., Juieng,P., Stoneburg,D., Martin,H., Knipe,K., Smith,P.
            and Strockbine,N.
  TITLE     High Quality Whole Genome Sequences for 59 Historical Shigella
            Strains Generated with PacBio Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4738998)
  AUTHORS   Kim,J.Y., Lindsey,R.L., Garcia-Toledo,L., Loparev,V.N., Rowe,L.A.,
            Batra,D., Juieng,P., Stoneburg,D., Martin,H., Knipe,K., Smith,P.
            and Strockbine,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2018) EDLB, CDC, 1600 Clifton Road, Atlanta, GA
            30333, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PSSS00000000.1.
            The Shigella boydii whole genome shotgun (WGS) project has the
            project accession NZ_PSSS00000000.  This version of the project
            (01) has the accession number NZ_PSSS01000000, and consists of
            sequences PSSS01000001-PSSS01000003.
            This genome has a base modification file available.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 146.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002968175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:23:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,997
            CDSs (total)                      :: 4,864
            Genes (coding)                    :: 3,963
            CDSs (with protein)               :: 3,963
            Genes (RNA)                       :: 133
            rRNAs                             :: 10, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 9, 9 (5S, 16S, 23S)
            tRNAs                             :: 99
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 901
            CDSs (without protein)            :: 901
            Pseudo Genes (ambiguous residues) :: 0 of 901
            Pseudo Genes (frameshifted)       :: 354 of 901
            Pseudo Genes (incomplete)         :: 546 of 901
            Pseudo Genes (internal stop)      :: 146 of 901
            Pseudo Genes (multiple problems)  :: 136 of 901
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4738998
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /strain="ATCC 35966"
                     /isolation_source="Diarrheic stool"
                     /culture_collection="ATCC:35966"
                     /db_xref="taxon:621"
                     /geo_loc_name="Bangladesh"
WGS         PSSS01000001-PSSS01000003
WGS_SCAFLD  NZ_PSSS01000001-NZ_PSSS01000003
//
LOCUS       NZ_JANUAJ010000000   3537737 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP3059, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUAJ000000000
VERSION     NZ_JANUAJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167274
            Assembly: GCF_024809575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 3537737)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3537737)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUAJ000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUAJ000000000.  This version of the project
            (01) has the accession number NZ_JANUAJ010000000, and consists of
            sequences JANUAJ010000001-JANUAJ010000003.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 323.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024809575.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:30:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,974
            CDSs (total)                      :: 2,924
            Genes (coding)                    :: 2,898
            CDSs (with protein)               :: 2,898
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 3 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3537737
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP3059"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUAJ010000001-JANUAJ010000003
WGS_SCAFLD  NZ_JANUAJ010000001-NZ_JANUAJ010000003
//
LOCUS       NZ_CEWCBN010000000   2079112 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus sp. isolate DRR171828_bin_8816, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWCBN000000000
VERSION     NZ_CEWCBN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091046
            Sequence Read Archive: DRR171828
            Assembly: GCF_982429415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus sp. (human gut metagenome)
  ORGANISM  Ruminococcus sp.
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2079112)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCBN000000000.1.
            The Ruminococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWCBN000000000.  This version of the project
            (01) has the accession number NZ_CEWCBN010000000, and consists of
            sequences CEWCBN010000001-CEWCBN010000154.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171828.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982429415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:04:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,061
            CDSs (total)                      :: 2,018
            Genes (coding)                    :: 1,996
            CDSs (with protein)               :: 1,996
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 1 (5S, 16S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 2 of 22
            Pseudo Genes (incomplete)         :: 19 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2079112
                     /organism="Ruminococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171828_bin_8816"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:41978"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCBN010000001-CEWCBN010000154
WGS_SCAFLD  NZ_CEWCBN010000001-NZ_CEWCBN010000154
//
LOCUS       NZ_RKKC01000000      4854712 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella frigidimarina strain KCCM 41815, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RKKC00000000
VERSION     NZ_RKKC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10397592
            Assembly: GCF_003797845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella frigidimarina
  ORGANISM  Shewanella frigidimarina
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4854712)
  AUTHORS   Hwang,Y.J. and Hwang,C.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-NOV-2018) Division of Polar Life Sciences, Korea
            Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon
            21990, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKKC00000000.1.
            The Shewanella frigidimarina whole genome shotgun (WGS) project has
            the project accession NZ_RKKC00000000.  This version of the project
            (01) has the accession number NZ_RKKC01000000, and consists of
            sequences RKKC01000001-RKKC01000057.
            Bacteria and source DNA available from KOPRI.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: SPAdes v. 3.12.0
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_003855155.1
            Genome Coverage           :: 272x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003797845.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:47:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,248
            CDSs (total)                      :: 4,143
            Genes (coding)                    :: 4,091
            CDSs (with protein)               :: 4,091
            Genes (RNA)                       :: 105
            rRNAs                             :: 4, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 91
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 16 of 53
            Pseudo Genes (incomplete)         :: 45 of 53
            Pseudo Genes (internal stop)      :: 12 of 53
            Pseudo Genes (multiple problems)  :: 17 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4854712
                     /organism="Shewanella frigidimarina"
                     /mol_type="genomic DNA"
                     /strain="KCCM 41815"
                     /isolation_source="sea ice"
                     /db_xref="taxon:56812"
                     /geo_loc_name="Antarctica: Prydz Bay"
                     /collection_date="1992"
WGS         RKKC01000001-RKKC01000057
WGS_SCAFLD  NZ_RKKC01000001-NZ_RKKC01000057
//
LOCUS       NZ_JBLYGU010000000   4335066 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Roseburia intestinalis strain 16-6-I 31 FAA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLYGU000000000
VERSION     NZ_JBLYGU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47199380
            Assembly: GCF_049723855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Roseburia intestinalis
  ORGANISM  Roseburia intestinalis
            Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales;
            Lachnospiraceae; Roseburia.
REFERENCE   1  (bases 1 to 4335066)
  AUTHORS   Fitzgerald,B.G.
  TITLE     The Regulated Production of Valerate and Hexanoate by
            Butyrate-Producing Lachnospiraceae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4335066)
  AUTHORS   Fitzgerald,B.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2025) Molecular and Cellular Biology, University
            of Guelph, 474 Gordon Street, Guelph, ON N1G 1Y2, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLYGU000000000.1.
            The Roseburia intestinalis whole genome shotgun (WGS) project has
            the project accession NZ_JBLYGU000000000.  This version of the
            project (01) has the accession number NZ_JBLYGU010000000, and
            consists of sequences JBLYGU010000001-JBLYGU010000019.
            Bacteria and source DNA available from Emma Allen-Vercoe.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-FEB-2025
            Assembly Method        :: Filtlong v. 0.2.1; Miniasm v. 0.3; Flye
                                      v. 2.9.1; Medaka v. 1.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 61.0x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049723855.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:13:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,953
            CDSs (total)                      :: 3,862
            Genes (coding)                    :: 3,781
            CDSs (with protein)               :: 3,781
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 17 of 81
            Pseudo Genes (incomplete)         :: 66 of 81
            Pseudo Genes (internal stop)      :: 9 of 81
            Pseudo Genes (multiple problems)  :: 11 of 81
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335066
                     /organism="Roseburia intestinalis"
                     /mol_type="genomic DNA"
                     /strain="16-6-I 31 FAA"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:166486"
                     /geo_loc_name="Canada: Guelph"
                     /collection_date="2013-01-09"
WGS         JBLYGU010000001-JBLYGU010000019
WGS_SCAFLD  NZ_JBLYGU010000001-NZ_JBLYGU010000019
//
LOCUS       NZ_SLXK01000000      4659852 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Scopulibacillus darangshiensis strain DSM 19377, whole genome
            shotgun sequencing project.
ACCESSION   NZ_SLXK00000000
VERSION     NZ_SLXK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10864734
            Assembly: GCF_004341035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Scopulibacillus darangshiensis
  ORGANISM  Scopulibacillus darangshiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Sporolactobacillaceae; Scopulibacillus.
REFERENCE   1  (bases 1 to 4659852)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4659852)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLXK00000000.1.
            The Scopulibacillus darangshiensis whole genome shotgun (WGS)
            project has the project accession NZ_SLXK00000000.  This version of
            the project (01) has the accession number NZ_SLXK01000000, and
            consists of sequences SLXK01000001-SLXK01000095.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 322.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341035.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:11:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,651
            CDSs (total)                      :: 4,578
            Genes (coding)                    :: 4,504
            CDSs (with protein)               :: 4,504
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 27 of 74
            Pseudo Genes (incomplete)         :: 52 of 74
            Pseudo Genes (internal stop)      :: 7 of 74
            Pseudo Genes (multiple problems)  :: 12 of 74
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4659852
                     /organism="Scopulibacillus darangshiensis"
                     /mol_type="genomic DNA"
                     /strain="DSM 19377"
                     /culture_collection="DSM:19377"
                     /type_material="type strain of Scopulibacillus
                     darangshiensis"
                     /db_xref="taxon:442528"
WGS         SLXK01000001-SLXK01000095
WGS_SCAFLD  NZ_SLXK01000001-NZ_SLXK01000095
//
LOCUS       NZ_CEWATD010000000   2584624 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate DRR171702_bin_36348, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWATD000000000
VERSION     NZ_CEWATD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090126
            Sequence Read Archive: DRR171702
            Assembly: GCF_982420485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2584624)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWATD000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CEWATD000000000.  This version of the
            project (01) has the accession number NZ_CEWATD010000000, and
            consists of sequences CEWATD010000001-CEWATD010000207.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171702.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982420485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:56:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,358
            CDSs (total)                      :: 2,315
            Genes (coding)                    :: 2,295
            CDSs (with protein)               :: 2,295
            Genes (RNA)                       :: 43
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 0 of 20
            Pseudo Genes (incomplete)         :: 19 of 20
            Pseudo Genes (internal stop)      :: 1 of 20
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584624
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="DRR171702_bin_36348"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWATD010000001-CEWATD010000207
WGS_SCAFLD  NZ_CEWATD010000001-NZ_CEWATD010000207
//
LOCUS       NZ_SLWF01000000      4034761 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella fodinae strain 74A, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SLWF00000000
VERSION     NZ_SLWF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362874
            Assembly: GCF_004342405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella fodinae
  ORGANISM  Shewanella fodinae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4034761)
  AUTHORS   Lamendella,R.
  TITLE     Freshwater and sediment microbial communities from various areas in
            North America, analyzing microbe dynamics in response to fracking
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4034761)
  AUTHORS   Lamendella,R., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLWF00000000.1.
            The Shewanella fodinae whole genome shotgun (WGS) project has the
            project accession NZ_SLWF00000000.  This version of the project
            (01) has the accession number NZ_SLWF01000000, and consists of
            sequences SLWF01000001-SLWF01000091.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 372.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342405.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:17:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,719
            CDSs (total)                      :: 3,617
            Genes (coding)                    :: 3,569
            CDSs (with protein)               :: 3,569
            Genes (RNA)                       :: 102
            rRNAs                             :: 7, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 4, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 16 of 48
            Pseudo Genes (incomplete)         :: 38 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 11 of 48
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4034761
                     /organism="Shewanella fodinae"
                     /mol_type="genomic DNA"
                     /strain="74A"
                     /db_xref="taxon:552357"
                     /geo_loc_name="USA: Pennsylvania"
                     /lat_lon="41.2451 N 76.9855 W"
WGS         SLWF01000001-SLWF01000091
WGS_SCAFLD  NZ_SLWF01000001-NZ_SLWF01000091
//
LOCUS       NZ_CEVYXQ010000000   2913971 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Romboutsia sp. isolate DRR171535_bin_4341, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVYXQ000000000
VERSION     NZ_CEVYXQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088787
            Sequence Read Archive: DRR171535
            Assembly: GCF_982408135.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Romboutsia sp. (human gut metagenome)
  ORGANISM  Romboutsia sp.
            Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales;
            Peptostreptococcaceae; Romboutsia.
REFERENCE   1  (bases 1 to 2913971)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVYXQ000000000.1.
            The Romboutsia sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVYXQ000000000.  This version of the project
            (01) has the accession number NZ_CEVYXQ010000000, and consists of
            sequences CEVYXQ010000001-CEVYXQ010000347.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171535.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982408135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:03:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,879
            CDSs (total)                      :: 2,853
            Genes (coding)                    :: 2,820
            CDSs (with protein)               :: 2,820
            Genes (RNA)                       :: 26
            rRNAs                             :: 5 (5S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 17
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 3 of 33
            Pseudo Genes (incomplete)         :: 24 of 33
            Pseudo Genes (internal stop)      :: 7 of 33
            Pseudo Genes (multiple problems)  :: 1 of 33
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913971
                     /organism="Romboutsia sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171535_bin_4341"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1965302"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVYXQ010000001-CEVYXQ010000347
WGS_SCAFLD  NZ_CEVYXQ010000001-NZ_CEVYXQ010000347
//
LOCUS       NZ_SLXH01000000      3778667 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Simplicispira metamorpha strain DSM 1837, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLXH00000000
VERSION     NZ_SLXH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866309
            Assembly: GCF_004341365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Simplicispira metamorpha
  ORGANISM  Simplicispira metamorpha
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Comamonadaceae; Simplicispira.
REFERENCE   1  (bases 1 to 3778667)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3778667)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLXH00000000.1.
            The Simplicispira metamorpha whole genome shotgun (WGS) project has
            the project accession NZ_SLXH00000000.  This version of the project
            (01) has the accession number NZ_SLXH01000000, and consists of
            sequences SLXH01000001-SLXH01000068.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 397.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341365.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:31:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,493
            CDSs (total)                      :: 3,434
            Genes (coding)                    :: 3,365
            CDSs (with protein)               :: 3,365
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 16 of 69
            Pseudo Genes (incomplete)         :: 62 of 69
            Pseudo Genes (internal stop)      :: 3 of 69
            Pseudo Genes (multiple problems)  :: 10 of 69
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3778667
                     /organism="Simplicispira metamorpha"
                     /mol_type="genomic DNA"
                     /strain="DSM 1837"
                     /culture_collection="DSM:1837"
                     /type_material="type strain of Simplicispira metamorpha"
                     /db_xref="taxon:80881"
WGS         SLXH01000001-SLXH01000068
WGS_SCAFLD  NZ_SLXH01000001-NZ_SLXH01000068
//
LOCUS       NZ_JAAGON010000000   5113703 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain S722, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAGON000000000
VERSION     NZ_JAAGON000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14013650
            Assembly: GCF_010499315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5113703)
  AUTHORS   Xiao,X.
  TITLE     epidemic Serratia marcescens clones
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5113703)
  AUTHORS   Xiao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2020) Department of Laboratory Medicine, Peking
            University, North Garden Road 49, Beijing, Beijing 100191, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGON000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JAAGON000000000.  This version of the project
            (01) has the accession number NZ_JAAGON010000000, and consists of
            sequences JAAGON010000001-JAAGON010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010499315.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:15:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,903
            CDSs (total)                      :: 4,791
            Genes (coding)                    :: 4,771
            CDSs (with protein)               :: 4,771
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5113703
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="S722"
                     /isolation_source="Tracheal aspiration"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="China"
                     /lat_lon="39.56 N 116.20 E"
                     /collection_date="2017-12-11"
                     /collected_by="puh3"
WGS         JAAGON010000001-JAAGON010000019
WGS_SCAFLD  NZ_JAAGON010000001-NZ_JAAGON010000019
//
LOCUS       NZ_CEWDEZ010000000   2529209 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus sp. isolate DRR171930_bin_8620, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWDEZ000000000
VERSION     NZ_CEWDEZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091776
            Sequence Read Archive: DRR171930
            Assembly: GCF_982438265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus sp. (human gut metagenome)
  ORGANISM  Ruminococcus sp.
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2529209)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWDEZ000000000.1.
            The Ruminococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWDEZ000000000.  This version of the project
            (01) has the accession number NZ_CEWDEZ010000000, and consists of
            sequences CEWDEZ010000001-CEWDEZ010000105.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171930.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982438265.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:44:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,386
            CDSs (total)                      :: 2,345
            Genes (coding)                    :: 2,321
            CDSs (with protein)               :: 2,321
            Genes (RNA)                       :: 41
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 1 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2529209
                     /organism="Ruminococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171930_bin_8620"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:41978"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWDEZ010000001-CEWDEZ010000105
WGS_SCAFLD  NZ_CEWDEZ010000001-NZ_CEWDEZ010000105
//
LOCUS       NZ_JAAGOM010000000   5113006 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain S717, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAGOM000000000
VERSION     NZ_JAAGOM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14013649
            Assembly: GCF_010499345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5113006)
  AUTHORS   Xiao,X.
  TITLE     epidemic Serratia marcescens clones
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5113006)
  AUTHORS   Xiao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2020) Department of Laboratory Medicine, Peking
            University, North Garden Road 49, Beijing, Beijing 100191, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGOM000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JAAGOM000000000.  This version of the project
            (01) has the accession number NZ_JAAGOM010000000, and consists of
            sequences JAAGOM010000001-JAAGOM010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010499345.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:22:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,901
            CDSs (total)                      :: 4,790
            Genes (coding)                    :: 4,770
            CDSs (with protein)               :: 4,770
            Genes (RNA)                       :: 111
            rRNAs                             :: 8, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 83
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5113006
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="S717"
                     /isolation_source="Tracheal aspiration"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="China"
                     /lat_lon="39.56 N 116.20 E"
                     /collection_date="2017-11-20"
                     /collected_by="puh3"
WGS         JAAGOM010000001-JAAGOM010000019
WGS_SCAFLD  NZ_JAAGOM010000001-NZ_JAAGOM010000019
//
LOCUS       NZ_JAAGOL010000000   5114128 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain S716, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAGOL000000000
VERSION     NZ_JAAGOL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14013648
            Assembly: GCF_010499355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5114128)
  AUTHORS   Xiao,X.
  TITLE     epidemic Serratia marcescens clones
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5114128)
  AUTHORS   Xiao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2020) Department of Laboratory Medicine, Peking
            University, North Garden Road 49, Beijing, Beijing 100191, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGOL000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JAAGOL000000000.  This version of the project
            (01) has the accession number NZ_JAAGOL010000000, and consists of
            sequences JAAGOL010000001-JAAGOL010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010499355.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:37:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,904
            CDSs (total)                      :: 4,791
            Genes (coding)                    :: 4,771
            CDSs (with protein)               :: 4,771
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 4 (5S, 16S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5114128
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="S716"
                     /isolation_source="catheter"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="China"
                     /lat_lon="39.56 N 116.20 E"
                     /collection_date="2017-11-12"
                     /collected_by="puh3"
WGS         JAAGOL010000001-JAAGOL010000019
WGS_SCAFLD  NZ_JAAGOL010000001-NZ_JAAGOL010000019
//
LOCUS       NZ_CEWAEY010000000   3836905 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruthenibacterium lactatiformans isolate DRR171642_bin_8280,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CEWAEY000000000
VERSION     NZ_CEWAEY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089597
            Sequence Read Archive: DRR171642
            Assembly: GCF_982416795.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruthenibacterium lactatiformans (human gut metagenome)
  ORGANISM  Ruthenibacterium lactatiformans
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruthenibacterium.
REFERENCE   1  (bases 1 to 3836905)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWAEY000000000.1.
            The Ruthenibacterium lactatiformans whole genome shotgun (WGS)
            project has the project accession NZ_CEWAEY000000000.  This version
            of the project (01) has the accession number NZ_CEWAEY010000000,
            and consists of sequences CEWAEY010000001-CEWAEY010000182.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171642.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982416795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:08:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,733
            CDSs (total)                      :: 3,687
            Genes (coding)                    :: 3,619
            CDSs (with protein)               :: 3,619
            Genes (RNA)                       :: 46
            tRNAs                             :: 39
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 6 of 68
            Pseudo Genes (incomplete)         :: 56 of 68
            Pseudo Genes (internal stop)      :: 11 of 68
            Pseudo Genes (multiple problems)  :: 5 of 68
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3836905
                     /organism="Ruthenibacterium lactatiformans"
                     /mol_type="genomic DNA"
                     /isolate="DRR171642_bin_8280"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1550024"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWAEY010000001-CEWAEY010000182
WGS_SCAFLD  NZ_CEWAEY010000001-NZ_CEWAEY010000182
//
LOCUS       NZ_JADZHT010000000   4835934 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain CCUG-20533, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHT000000000
VERSION     NZ_JADZHT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670452
            Assembly: GCF_017580595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4835934)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4835934)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHT000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHT000000000.  This version of the project
            (01) has the accession number NZ_JADZHT010000000, and consists of
            sequences JADZHT010000001-JADZHT010000058.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 127.29254741690023x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580595.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:07:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,354
            CDSs (total)                      :: 4,244
            Genes (coding)                    :: 4,199
            CDSs (with protein)               :: 4,199
            Genes (RNA)                       :: 110
            rRNAs                             :: 7, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 10 of 45
            Pseudo Genes (incomplete)         :: 42 of 45
            Pseudo Genes (internal stop)      :: 5 of 45
            Pseudo Genes (multiple problems)  :: 9 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4835934
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="CCUG-20533"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Sweden"
                     /collection_date="1987"
WGS         JADZHT010000001-JADZHT010000058
WGS_SCAFLD  NZ_JADZHT010000001-NZ_JADZHT010000058
//
LOCUS       NZ_JADZHL010000000   4876138 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain CCUG-72638, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHL000000000
VERSION     NZ_JADZHL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670447
            Assembly: GCF_017580425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4876138)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4876138)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHL000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHL000000000.  This version of the project
            (01) has the accession number NZ_JADZHL010000000, and consists of
            sequences JADZHL010000001-JADZHL010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 192.39437337499473x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580425.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:06:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,353
            CDSs (total)                      :: 4,241
            Genes (coding)                    :: 4,196
            CDSs (with protein)               :: 4,196
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 17 of 46
            Pseudo Genes (incomplete)         :: 36 of 46
            Pseudo Genes (internal stop)      :: 6 of 46
            Pseudo Genes (multiple problems)  :: 11 of 46
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876138
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="CCUG-72638"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Sweden"
                     /collection_date="2018"
WGS         JADZHL010000001-JADZHL010000060
WGS_SCAFLD  NZ_JADZHL010000001-NZ_JADZHL010000060
//
LOCUS       NZ_JADZHN010000000   4796178 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain CCUG-56496, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHN000000000
VERSION     NZ_JADZHN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670457
            Assembly: GCF_017580455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4796178)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4796178)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHN000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHN000000000.  This version of the project
            (01) has the accession number NZ_JADZHN010000000, and consists of
            sequences JADZHN010000001-JADZHN010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 144.0927561487501x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580455.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:12:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,328
            CDSs (total)                      :: 4,216
            Genes (coding)                    :: 4,173
            CDSs (with protein)               :: 4,173
            Genes (RNA)                       :: 112
            rRNAs                             :: 4, 6, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 2 (16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 8 of 43
            Pseudo Genes (incomplete)         :: 38 of 43
            Pseudo Genes (internal stop)      :: 4 of 43
            Pseudo Genes (multiple problems)  :: 5 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4796178
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="CCUG-56496"
                     /isolation_source="trachea"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Sweden"
                     /collection_date="2008"
WGS         JADZHN010000001-JADZHN010000038
WGS_SCAFLD  NZ_JADZHN010000001-NZ_JADZHN010000038
//
LOCUS       NZ_JADZHV010000000   4875886 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain CCUG-12945, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHV000000000
VERSION     NZ_JADZHV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670454
            Assembly: GCF_017580665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4875886)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4875886)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHV000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHV000000000.  This version of the project
            (01) has the accession number NZ_JADZHV010000000, and consists of
            sequences JADZHV010000001-JADZHV010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123.72022287578571x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580665.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:16:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,382
            CDSs (total)                      :: 4,269
            Genes (coding)                    :: 4,227
            CDSs (with protein)               :: 4,227
            Genes (RNA)                       :: 113
            rRNAs                             :: 5, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 10 of 43
            Pseudo Genes (incomplete)         :: 37 of 43
            Pseudo Genes (internal stop)      :: 9 of 43
            Pseudo Genes (multiple problems)  :: 10 of 43
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4875886
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="CCUG-12945"
                     /isolation_source="wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="USA"
                     /collection_date="1982"
WGS         JADZHV010000001-JADZHV010000040
WGS_SCAFLD  NZ_JADZHV010000001-NZ_JADZHV010000040
//
LOCUS       NZ_JBPGXL010000000   7498215 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhizobium lusitanum strain TLI8-12F, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBPGXL000000000
VERSION     NZ_JBPGXL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941086
            Assembly: GCF_056755455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhizobium lusitanum
  ORGANISM  Rhizobium lusitanum
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Rhizobium.
REFERENCE   1  (bases 1 to 7498215)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7498215)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGXL000000000.1.
            The Rhizobium lusitanum whole genome shotgun (WGS) project has the
            project accession NZ_JBPGXL000000000.  This version of the project
            (01) has the accession number NZ_JBPGXL010000000, and consists of
            sequences JBPGXL010000001-JBPGXL010000240.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755455.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:07:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,326
            CDSs (total)                      :: 7,271
            Genes (coding)                    :: 7,019
            CDSs (with protein)               :: 7,019
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 252
            CDSs (without protein)            :: 252
            Pseudo Genes (ambiguous residues) :: 0 of 252
            Pseudo Genes (frameshifted)       :: 85 of 252
            Pseudo Genes (incomplete)         :: 207 of 252
            Pseudo Genes (internal stop)      :: 29 of 252
            Pseudo Genes (multiple problems)  :: 62 of 252
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7498215
                     /organism="Rhizobium lusitanum"
                     /mol_type="genomic DNA"
                     /strain="TLI8-12F"
                     /db_xref="taxon:293958"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBPGXL010000001-JBPGXL010000240
WGS_SCAFLD  NZ_JBPGXL010000001-NZ_JBPGXL010000240
//
LOCUS       NZ_JADZGQ010000000   4932981 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain HUD-I2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZGQ000000000
VERSION     NZ_JADZGQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670474
            Assembly: GCF_017580005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4932981)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4932981)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZGQ000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZGQ000000000.  This version of the project
            (01) has the accession number NZ_JADZGQ010000000, and consists of
            sequences JADZGQ010000001-JADZGQ010000061.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 108.26086640106662x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580005.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:09:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,481
            CDSs (total)                      :: 4,365
            Genes (coding)                    :: 4,324
            CDSs (with protein)               :: 4,324
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 1, 4, 3 (5S, 16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 11 of 41
            Pseudo Genes (incomplete)         :: 35 of 41
            Pseudo Genes (internal stop)      :: 3 of 41
            Pseudo Genes (multiple problems)  :: 7 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4932981
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="HUD-I2"
                     /isolation_source="wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Sweden"
                     /collection_date="2018"
WGS         JADZGQ010000001-JADZGQ010000061
WGS_SCAFLD  NZ_JADZGQ010000001-NZ_JADZGQ010000061
//
LOCUS       NZ_JAFIYX010000000   5287646 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia ureilytica strain SER00308, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFIYX000000000
VERSION     NZ_JAFIYX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17965088
            Assembly: GCF_017152615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia ureilytica
  ORGANISM  Serratia ureilytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5287646)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Enhanced detection system for hospital associated transmission
            using whole genome sequencing surveillance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5287646)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) School of Medicine, University of
            Pittsburgh, 4200 Fifth Ave, Pittsburgh, PA 15260, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFIYX000000000.1.
            The Serratia ureilytica whole genome shotgun (WGS) project has the
            project accession NZ_JAFIYX000000000.  This version of the project
            (01) has the accession number NZ_JAFIYX010000000, and consists of
            sequences JAFIYX010000001-JAFIYX010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 84x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017152615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:15:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,021
            CDSs (total)                      :: 4,924
            Genes (coding)                    :: 4,890
            CDSs (with protein)               :: 4,890
            Genes (RNA)                       :: 97
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 22 of 36
            Pseudo Genes (internal stop)      :: 8 of 36
            Pseudo Genes (multiple problems)  :: 7 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5287646
                     /organism="Serratia ureilytica"
                     /mol_type="genomic DNA"
                     /strain="SER00308"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:300181"
                     /geo_loc_name="USA: Pittsburgh, Pennsylvania"
                     /lat_lon="40.44 N 79.97 W"
                     /collection_date="2019"
                     /collected_by="University of Pittsburgh Medical Center"
WGS         JAFIYX010000001-JAFIYX010000025
WGS_SCAFLD  NZ_JAFIYX010000001-NZ_JAFIYX010000025
//
LOCUS       NZ_JANTYZ010000000   4157817 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP2016B, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANTYZ000000000
VERSION     NZ_JANTYZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167810
            Assembly: GCF_024806815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4157817)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4157817)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANTYZ000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANTYZ000000000.  This version of the project
            (01) has the accession number NZ_JANTYZ010000000, and consists of
            sequences JANTYZ010000001-JANTYZ010000049.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 361.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024806815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:28:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,553
            CDSs (total)                      :: 3,502
            Genes (coding)                    :: 3,430
            CDSs (with protein)               :: 3,430
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 26 of 72
            Pseudo Genes (incomplete)         :: 43 of 72
            Pseudo Genes (internal stop)      :: 14 of 72
            Pseudo Genes (multiple problems)  :: 10 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4157817
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP2016B"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANTYZ010000001-JANTYZ010000049
WGS_SCAFLD  NZ_JANTYZ010000001-NZ_JANTYZ010000049
//
LOCUS       NZ_JBNDIC010000000   6777920 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhizobium sp. KNZ2-6A, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNDIC000000000
VERSION     NZ_JBNDIC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941049
            Assembly: GCF_056755475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhizobium sp. KNZ2-6A
  ORGANISM  Rhizobium sp. KNZ2-6A
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Rhizobium.
REFERENCE   1  (bases 1 to 6777920)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6777920)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNDIC000000000.1.
            The Rhizobium sp. KNZ2-6A whole genome shotgun (WGS) project has
            the project accession NZ_JBNDIC000000000.  This version of the
            project (01) has the accession number NZ_JBNDIC010000000, and
            consists of sequences JBNDIC010000001-JBNDIC010000167.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:02:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,609
            CDSs (total)                      :: 6,556
            Genes (coding)                    :: 6,352
            CDSs (with protein)               :: 6,352
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 204
            CDSs (without protein)            :: 204
            Pseudo Genes (ambiguous residues) :: 0 of 204
            Pseudo Genes (frameshifted)       :: 74 of 204
            Pseudo Genes (incomplete)         :: 163 of 204
            Pseudo Genes (internal stop)      :: 21 of 204
            Pseudo Genes (multiple problems)  :: 47 of 204
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6777920
                     /organism="Rhizobium sp. KNZ2-6A"
                     /mol_type="genomic DNA"
                     /strain="KNZ2-6A"
                     /db_xref="taxon:3416693"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBNDIC010000001-JBNDIC010000167
WGS_SCAFLD  NZ_JBNDIC010000001-NZ_JBNDIC010000167
//
LOCUS       NZ_JANUBB010000000   4072250 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP2017, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUBB000000000
VERSION     NZ_JANUBB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167236
            Assembly: GCF_024806735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4072250)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4072250)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUBB000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUBB000000000.  This version of the project
            (01) has the accession number NZ_JANUBB010000000, and consists of
            sequences JANUBB010000001-JANUBB010000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 199.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024806735.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:37:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,381
            CDSs (total)                      :: 3,331
            Genes (coding)                    :: 3,277
            CDSs (with protein)               :: 3,277
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 10 of 54
            Pseudo Genes (incomplete)         :: 43 of 54
            Pseudo Genes (internal stop)      :: 5 of 54
            Pseudo Genes (multiple problems)  :: 3 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4072250
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP2017"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUBB010000001-JANUBB010000039
WGS_SCAFLD  NZ_JANUBB010000001-NZ_JANUBB010000039
//
LOCUS       NZ_JANUBL010000000   4056378 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP3026, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUBL000000000
VERSION     NZ_JANUBL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13166368
            Assembly: GCF_024808775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4056378)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4056378)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUBL000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUBL000000000.  This version of the project
            (01) has the accession number NZ_JANUBL010000000, and consists of
            sequences JANUBL010000001-JANUBL010000030.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 301.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024808775.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:47:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,396
            CDSs (total)                      :: 3,346
            Genes (coding)                    :: 3,307
            CDSs (with protein)               :: 3,307
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 12 of 39
            Pseudo Genes (incomplete)         :: 26 of 39
            Pseudo Genes (internal stop)      :: 7 of 39
            Pseudo Genes (multiple problems)  :: 5 of 39
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4056378
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP3026"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUBL010000001-JANUBL010000030
WGS_SCAFLD  NZ_JANUBL010000001-NZ_JANUBL010000030
//
LOCUS       NZ_JANUAY010000000   4109516 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP2008, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUAY000000000
VERSION     NZ_JANUAY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167317
            Assembly: GCF_024808405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4109516)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4109516)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUAY000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUAY000000000.  This version of the project
            (01) has the accession number NZ_JANUAY010000000, and consists of
            sequences JANUAY010000001-JANUAY010000075.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 109.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024808405.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:43:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,510
            CDSs (total)                      :: 3,459
            Genes (coding)                    :: 3,398
            CDSs (with protein)               :: 3,398
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 14 of 62
            Pseudo Genes (incomplete)         :: 46 of 62
            Pseudo Genes (internal stop)      :: 11 of 62
            Pseudo Genes (multiple problems)  :: 9 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4109516
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP2008"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUAY010000001-JANUAY010000075
WGS_SCAFLD  NZ_JANUAY010000001-NZ_JANUAY010000075
//
LOCUS       NZ_JANUBQ010000000   3590930 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SD12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUBQ000000000
VERSION     NZ_JANUBQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167662
            Assembly: GCF_024809175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 3590930)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3590930)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUBQ000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUBQ000000000.  This version of the project
            (01) has the accession number NZ_JANUBQ010000000, and consists of
            sequences JANUBQ010000001-JANUBQ010000019.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 197.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024809175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:52:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,039
            CDSs (total)                      :: 2,985
            Genes (coding)                    :: 2,959
            CDSs (with protein)               :: 2,959
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 4 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 5 of 26
            Pseudo Genes (incomplete)         :: 20 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3590930
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SD12"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUBQ010000001-JANUBQ010000019
WGS_SCAFLD  NZ_JANUBQ010000001-NZ_JANUBQ010000019
//
LOCUS       NZ_JANUAA010000000   4100702 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP3044, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUAA000000000
VERSION     NZ_JANUAA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167759
            Assembly: GCF_024806695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4100702)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4100702)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUAA000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUAA000000000.  This version of the project
            (01) has the accession number NZ_JANUAA010000000, and consists of
            sequences JANUAA010000001-JANUAA010000064.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 90.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024806695.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:46:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,458
            CDSs (total)                      :: 3,404
            Genes (coding)                    :: 3,345
            CDSs (with protein)               :: 3,345
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 19 of 59
            Pseudo Genes (incomplete)         :: 35 of 59
            Pseudo Genes (internal stop)      :: 13 of 59
            Pseudo Genes (multiple problems)  :: 7 of 59
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100702
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP3044"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUAA010000001-JANUAA010000064
WGS_SCAFLD  NZ_JANUAA010000001-NZ_JANUAA010000064
//
LOCUS       NZ_JANTZO010000000   4102085 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP3019, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANTZO000000000
VERSION     NZ_JANTZO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167121
            Assembly: GCF_024806955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4102085)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4102085)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANTZO000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANTZO000000000.  This version of the project
            (01) has the accession number NZ_JANTZO010000000, and consists of
            sequences JANTZO010000001-JANTZO010000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 229.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024806955.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:19:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,498
            CDSs (total)                      :: 3,448
            Genes (coding)                    :: 3,413
            CDSs (with protein)               :: 3,413
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 6 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 2 of 35
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102085
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP3019"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANTZO010000001-JANTZO010000026
WGS_SCAFLD  NZ_JANTZO010000001-NZ_JANTZO010000026
//
LOCUS       NZ_JBAJVB010000000   5060511 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain MIC00063526, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBAJVB000000000
VERSION     NZ_JBAJVB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39983262
            Assembly: GCF_048965925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5060511)
  AUTHORS   Boceska,B.K.
  TITLE     Identification of potential novel combination antibiotic regimens
            based on drug-susceptibility and genetic diversity of Gram-negative
            bacteria causing neonatal sepsis in low- and middle-income
            countries
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5060511)
  AUTHORS   Lin,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2024) Laboratory of Medical Microbiology,
            University of Antwerp, Universiteitsplein, 1, Wilrijk 2610, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAJVB000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JBAJVB000000000.  This version of the project
            (01) has the accession number NZ_JBAJVB010000000, and consists of
            sequences JBAJVB010000001-JBAJVB010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v.3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048965925.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:21:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,849
            CDSs (total)                      :: 4,758
            Genes (coding)                    :: 4,741
            CDSs (with protein)               :: 4,741
            Genes (RNA)                       :: 91
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 8 of 19
            Pseudo Genes (incomplete)         :: 15 of 19
            Pseudo Genes (internal stop)      :: 3 of 19
            Pseudo Genes (multiple problems)  :: 8 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5060511
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="MIC00063526"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="South Africa: Johannesburg"
                     /lat_lon="26.176000 S 28.043900 E"
                     /collection_date="2018-11-29"
                     /collected_by="NeoOBS Study"
WGS         JBAJVB010000001-JBAJVB010000028
WGS_SCAFLD  NZ_JBAJVB010000001-NZ_JBAJVB010000028
//
LOCUS       NZ_JANUAE010000000   4327067 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP3049, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUAE000000000
VERSION     NZ_JANUAE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13166646
            Assembly: GCF_024808095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4327067)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4327067)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUAE000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUAE000000000.  This version of the project
            (01) has the accession number NZ_JANUAE010000000, and consists of
            sequences JANUAE010000001-JANUAE010000038.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 231.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024808095.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:39:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,714
            CDSs (total)                      :: 3,663
            Genes (coding)                    :: 3,601
            CDSs (with protein)               :: 3,601
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 18 of 62
            Pseudo Genes (incomplete)         :: 46 of 62
            Pseudo Genes (internal stop)      :: 7 of 62
            Pseudo Genes (multiple problems)  :: 8 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4327067
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP3049"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUAE010000001-JANUAE010000038
WGS_SCAFLD  NZ_JANUAE010000001-NZ_JANUAE010000038
//
LOCUS       NZ_JBNDHS010000000   7041981 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhizobium sp. SVR5-9E, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNDHS000000000
VERSION     NZ_JBNDHS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941078
            Assembly: GCF_056755095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhizobium sp. SVR5-9E
  ORGANISM  Rhizobium sp. SVR5-9E
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Rhizobium.
REFERENCE   1  (bases 1 to 7041981)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7041981)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNDHS000000000.1.
            The Rhizobium sp. SVR5-9E whole genome shotgun (WGS) project has
            the project accession NZ_JBNDHS000000000.  This version of the
            project (01) has the accession number NZ_JBNDHS010000000, and
            consists of sequences JBNDHS010000001-JBNDHS010000895.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 119x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755095.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:41:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,475
            CDSs (total)                      :: 7,403
            Genes (coding)                    :: 6,950
            CDSs (with protein)               :: 6,950
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 8, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 8, 10 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 453
            CDSs (without protein)            :: 453
            Pseudo Genes (ambiguous residues) :: 0 of 453
            Pseudo Genes (frameshifted)       :: 154 of 453
            Pseudo Genes (incomplete)         :: 367 of 453
            Pseudo Genes (internal stop)      :: 27 of 453
            Pseudo Genes (multiple problems)  :: 88 of 453
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7041981
                     /organism="Rhizobium sp. SVR5-9E"
                     /mol_type="genomic DNA"
                     /strain="SVR5-9E"
                     /db_xref="taxon:3416702"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBNDHS010000001-JBNDHS010000895
WGS_SCAFLD  NZ_JBNDHS010000001-NZ_JBNDHS010000895
//
LOCUS       NZ_JANTZM010000000   4052211 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP3002, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANTZM000000000
VERSION     NZ_JANTZM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13166458
            Assembly: GCF_024808335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4052211)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4052211)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANTZM000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANTZM000000000.  This version of the project
            (01) has the accession number NZ_JANTZM010000000, and consists of
            sequences JANTZM010000001-JANTZM010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 370.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024808335.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:43:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,495
            CDSs (total)                      :: 3,440
            Genes (coding)                    :: 3,396
            CDSs (with protein)               :: 3,396
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 11 of 44
            Pseudo Genes (incomplete)         :: 33 of 44
            Pseudo Genes (internal stop)      :: 8 of 44
            Pseudo Genes (multiple problems)  :: 6 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4052211
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP3002"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANTZM010000001-JANTZM010000063
WGS_SCAFLD  NZ_JANTZM010000001-NZ_JANTZM010000063
//
LOCUS       NZ_JBMOWF010000000   5636028 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia fonticola strain PSXD-302, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMOWF000000000
VERSION     NZ_JBMOWF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47122132
            Assembly: GCF_049310705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia fonticola
  ORGANISM  Serratia fonticola
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5636028)
  AUTHORS   Sun,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2025) School of Life Sciences, Jilin Agricultural
            University, No. 2888, Xincheng Street, jilin 130117, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMOWF000000000.1.
            The Serratia fonticola whole genome shotgun (WGS) project has the
            project accession NZ_JBMOWF000000000.  This version of the project
            (01) has the accession number NZ_JBMOWF010000000, and consists of
            sequences JBMOWF010000001-JBMOWF010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. version2.04; SPAdes v.
                                      3.10.0; ABySS v. 1.3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049310705.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:50:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,321
            CDSs (total)                      :: 5,233
            Genes (coding)                    :: 5,113
            CDSs (with protein)               :: 5,113
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 35 of 120
            Pseudo Genes (incomplete)         :: 94 of 120
            Pseudo Genes (internal stop)      :: 16 of 120
            Pseudo Genes (multiple problems)  :: 23 of 120
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5636028
                     /organism="Serratia fonticola"
                     /mol_type="genomic DNA"
                     /strain="PSXD-302"
                     /isolation_source="epidermis"
                     /db_xref="taxon:47917"
                     /geo_loc_name="China: jilin"
                     /collection_date="2023-01-30"
WGS         JBMOWF010000001-JBMOWF010000063
WGS_SCAFLD  NZ_JBMOWF010000001-NZ_JBMOWF010000063
//
LOCUS       NZ_JANUAK010000000   4326816 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP3060, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANUAK000000000
VERSION     NZ_JANUAK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13167457
            Assembly: GCF_024809545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4326816)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4326816)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANUAK000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANUAK000000000.  This version of the project
            (01) has the accession number NZ_JANUAK010000000, and consists of
            sequences JANUAK010000001-JANUAK010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 196.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024809545.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:54:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,728
            CDSs (total)                      :: 3,677
            Genes (coding)                    :: 3,615
            CDSs (with protein)               :: 3,615
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 18 of 62
            Pseudo Genes (incomplete)         :: 46 of 62
            Pseudo Genes (internal stop)      :: 7 of 62
            Pseudo Genes (multiple problems)  :: 8 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4326816
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP3060"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANUAK010000001-JANUAK010000037
WGS_SCAFLD  NZ_JANUAK010000001-NZ_JANUAK010000037
//
LOCUS       NZ_JBNDHQ010000000   7580288 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhizobium lusitanum strain TLI9-4D, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBNDHQ000000000
VERSION     NZ_JBNDHQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941090
            Assembly: GCF_056755035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhizobium lusitanum
  ORGANISM  Rhizobium lusitanum
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Rhizobium.
REFERENCE   1  (bases 1 to 7580288)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7580288)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNDHQ000000000.1.
            The Rhizobium lusitanum whole genome shotgun (WGS) project has the
            project accession NZ_JBNDHQ000000000.  This version of the project
            (01) has the accession number NZ_JBNDHQ010000000, and consists of
            sequences JBNDHQ010000001-JBNDHQ010000603.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 198x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755035.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:01:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,608
            CDSs (total)                      :: 7,553
            Genes (coding)                    :: 7,200
            CDSs (with protein)               :: 7,200
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 353
            CDSs (without protein)            :: 353
            Pseudo Genes (ambiguous residues) :: 0 of 353
            Pseudo Genes (frameshifted)       :: 87 of 353
            Pseudo Genes (incomplete)         :: 307 of 353
            Pseudo Genes (internal stop)      :: 30 of 353
            Pseudo Genes (multiple problems)  :: 63 of 353
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7580288
                     /organism="Rhizobium lusitanum"
                     /mol_type="genomic DNA"
                     /strain="TLI9-4D"
                     /db_xref="taxon:293958"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBNDHQ010000001-JBNDHQ010000603
WGS_SCAFLD  NZ_JBNDHQ010000001-NZ_JBNDHQ010000603
//
LOCUS       NZ_JANTZD010000000   4155667 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salinibacter ruber strain SP2032, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JANTZD000000000
VERSION     NZ_JANTZD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13168121
            Assembly: GCF_024808215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salinibacter ruber
  ORGANISM  Salinibacter ruber
            Bacteria; Pseudomonadati; Rhodothermota; Rhodothermia;
            Rhodothermales; Salinibacteraceae; Salinibacter.
REFERENCE   1  (bases 1 to 4155667)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase V (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4155667)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-AUG-2022) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANTZD000000000.1.
            The Salinibacter ruber whole genome shotgun (WGS) project has the
            project accession NZ_JANTZD000000000.  This version of the project
            (01) has the accession number NZ_JANTZD010000000, and consists of
            sequences JANTZD010000001-JANTZD010000049.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 358.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024808215.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:00:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,551
            CDSs (total)                      :: 3,500
            Genes (coding)                    :: 3,428
            CDSs (with protein)               :: 3,428
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 25 of 72
            Pseudo Genes (incomplete)         :: 44 of 72
            Pseudo Genes (internal stop)      :: 14 of 72
            Pseudo Genes (multiple problems)  :: 10 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4155667
                     /organism="Salinibacter ruber"
                     /mol_type="genomic DNA"
                     /strain="SP2032"
                     /db_xref="taxon:146919"
                     /geo_loc_name="Spain"
                     /lat_lon="38.2 N 0.6 E"
WGS         JANTZD010000001-JANTZD010000049
WGS_SCAFLD  NZ_JANTZD010000001-NZ_JANTZD010000049
//
LOCUS       NZ_CEVXUR010000000   2891988 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Sellimonas intestinalis isolate DRR127754_bin_8107, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEVXUR000000000
VERSION     NZ_CEVXUR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088066
            Sequence Read Archive: DRR127754
            Assembly: GCF_982400635.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Sellimonas intestinalis (human gut metagenome)
  ORGANISM  Sellimonas intestinalis
            Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales;
            Lachnospiraceae; Sellimonas.
REFERENCE   1  (bases 1 to 2891988)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVXUR000000000.1.
            The Sellimonas intestinalis whole genome shotgun (WGS) project has
            the project accession NZ_CEVXUR000000000.  This version of the
            project (01) has the accession number NZ_CEVXUR010000000, and
            consists of sequences CEVXUR010000001-CEVXUR010000051.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR127754.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982400635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:22:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,817
            CDSs (total)                      :: 2,775
            Genes (coding)                    :: 2,739
            CDSs (with protein)               :: 2,739
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 8 of 36
            Pseudo Genes (incomplete)         :: 29 of 36
            Pseudo Genes (internal stop)      :: 4 of 36
            Pseudo Genes (multiple problems)  :: 4 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891988
                     /organism="Sellimonas intestinalis"
                     /mol_type="genomic DNA"
                     /isolate="DRR127754_bin_8107"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1653434"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVXUR010000001-CEVXUR010000051
WGS_SCAFLD  NZ_CEVXUR010000001-NZ_CEVXUR010000051
//
LOCUS       NZ_JBPGWR010000000   5472891 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rahnella aceris strain MI2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBPGWR000000000
VERSION     NZ_JBPGWR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941058
            Assembly: GCF_056754795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rahnella aceris
  ORGANISM  Rahnella aceris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Rahnella.
REFERENCE   1  (bases 1 to 5472891)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5472891)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGWR000000000.1.
            The Rahnella aceris whole genome shotgun (WGS) project has the
            project accession NZ_JBPGWR000000000.  This version of the project
            (01) has the accession number NZ_JBPGWR010000000, and consists of
            sequences JBPGWR010000001-JBPGWR010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 524x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:27:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,071
            CDSs (total)                      :: 4,964
            Genes (coding)                    :: 4,844
            CDSs (with protein)               :: 4,844
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 81 of 120
            Pseudo Genes (incomplete)         :: 39 of 120
            Pseudo Genes (internal stop)      :: 9 of 120
            Pseudo Genes (multiple problems)  :: 8 of 120
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5472891
                     /organism="Rahnella aceris"
                     /mol_type="genomic DNA"
                     /strain="MI2"
                     /db_xref="taxon:2703885"
                     /geo_loc_name="USA: North Carolina"
                     /lat_lon="35.7851 N 78.6813 W"
                     /collection_date="2020-10-29"
WGS         JBPGWR010000001-JBPGWR010000002
WGS_SCAFLD  NZ_JBPGWR010000001-NZ_JBPGWR010000002
//
LOCUS       NZ_JBUXQP010000000   5279880 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain CRE59, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBUXQP000000000
VERSION     NZ_JBUXQP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN55285758
            Assembly: GCF_056763935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5279880)
  AUTHORS   Zhang,Q.
  TITLE     Aztreonam-Avibactam against Carbapenem-Resistant Enterobacterales:
            Susceptibility and Genomic Analysis in a Chinese Teaching Hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5279880)
  AUTHORS   Zhang,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2026) clinical lab, shenzhen hopspital of
            southern medical university, xinhu, shenzhen, gungdong 518100,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBUXQP000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JBUXQP000000000.  This version of the project
            (01) has the accession number NZ_JBUXQP010000000, and consists of
            sequences JBUXQP010000001-JBUXQP010000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-NOV-2025
            Assembly Method        :: SPAdes v. v3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056763935.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 23:16:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,024
            CDSs (total)                      :: 4,930
            Genes (coding)                    :: 4,891
            CDSs (with protein)               :: 4,891
            Genes (RNA)                       :: 94
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 15 of 40
            Pseudo Genes (incomplete)         :: 30 of 40
            Pseudo Genes (internal stop)      :: 3 of 40
            Pseudo Genes (multiple problems)  :: 7 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5279880
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="CRE59"
                     /isolation_source="drainage fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="China: Guangdong, Shenzhen"
                     /lat_lon="22.45 N 113.52 E"
                     /collection_date="2022-08-03"
                     /collected_by="Shenzhen Hospital, Southern Medical
                     University"
WGS         JBUXQP010000001-JBUXQP010000037
WGS_SCAFLD  NZ_JBUXQP010000001-NZ_JBUXQP010000037
//
LOCUS       NZ_JBNDHT010000000   7142276 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhizobium sp. SVR5-2C, whole genome shotgun sequencing project.
ACCESSION   NZ_JBNDHT000000000
VERSION     NZ_JBNDHT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941075
            Assembly: GCF_056755115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhizobium sp. SVR5-2C
  ORGANISM  Rhizobium sp. SVR5-2C
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Rhizobium.
REFERENCE   1  (bases 1 to 7142276)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7142276)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNDHT000000000.1.
            The Rhizobium sp. SVR5-2C whole genome shotgun (WGS) project has
            the project accession NZ_JBNDHT000000000.  This version of the
            project (01) has the accession number NZ_JBNDHT010000000, and
            consists of sequences JBNDHT010000001-JBNDHT010000764.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 165x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:58:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,490
            CDSs (total)                      :: 7,432
            Genes (coding)                    :: 6,947
            CDSs (with protein)               :: 6,947
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 485
            CDSs (without protein)            :: 485
            Pseudo Genes (ambiguous residues) :: 0 of 485
            Pseudo Genes (frameshifted)       :: 175 of 485
            Pseudo Genes (incomplete)         :: 378 of 485
            Pseudo Genes (internal stop)      :: 43 of 485
            Pseudo Genes (multiple problems)  :: 98 of 485
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7142276
                     /organism="Rhizobium sp. SVR5-2C"
                     /mol_type="genomic DNA"
                     /strain="SVR5-2C"
                     /db_xref="taxon:3416701"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBNDHT010000001-JBNDHT010000764
WGS_SCAFLD  NZ_JBNDHT010000001-NZ_JBNDHT010000764
//
LOCUS       NZ_JBPGWQ010000000   5575800 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhodococcoides fascians strain MSU4B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBPGWQ000000000
VERSION     NZ_JBPGWQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941064
            Assembly: GCF_056754785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhodococcoides fascians
  ORGANISM  Rhodococcoides fascians
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Nocardiaceae; Rhodococcoides.
REFERENCE   1  (bases 1 to 5575800)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5575800)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGWQ000000000.1.
            The Rhodococcoides fascians whole genome shotgun (WGS) project has
            the project accession NZ_JBPGWQ000000000.  This version of the
            project (01) has the accession number NZ_JBPGWQ010000000, and
            consists of sequences JBPGWQ010000001-JBPGWQ010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754785.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:42:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,238
            CDSs (total)                      :: 5,176
            Genes (coding)                    :: 5,126
            CDSs (with protein)               :: 5,126
            Genes (RNA)                       :: 62
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 17 of 50
            Pseudo Genes (incomplete)         :: 27 of 50
            Pseudo Genes (internal stop)      :: 9 of 50
            Pseudo Genes (multiple problems)  :: 2 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5575800
                     /organism="Rhodococcoides fascians"
                     /mol_type="genomic DNA"
                     /strain="MSU4B"
                     /db_xref="taxon:1828"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2021-10-01"
WGS         JBPGWQ010000001-JBPGWQ010000002
WGS_SCAFLD  NZ_JBPGWQ010000001-NZ_JBPGWQ010000002
//
LOCUS       NZ_JBUXPZ010000000   5003147 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CRE78, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBUXPZ000000000
VERSION     NZ_JBUXPZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN55285777
            Assembly: GCF_056763615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5003147)
  AUTHORS   Zhang,Q.
  TITLE     Aztreonam-Avibactam against Carbapenem-Resistant Enterobacterales:
            Susceptibility and Genomic Analysis in a Chinese Teaching Hospital
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5003147)
  AUTHORS   Zhang,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2026) clinical lab, shenzhen hopspital of
            southern medical university, xinhu, shenzhen, gungdong 518100,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBUXPZ000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBUXPZ000000000.  This version of the project
            (01) has the accession number NZ_JBUXPZ010000000, and consists of
            sequences JBUXPZ010000001-JBUXPZ010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-NOV-2025
            Assembly Method        :: SPAdes v. v3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056763615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 23:27:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,935
            CDSs (total)                      :: 4,841
            Genes (coding)                    :: 4,690
            CDSs (with protein)               :: 4,690
            Genes (RNA)                       :: 94
            rRNAs                             :: 2, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 5 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 57 of 151
            Pseudo Genes (incomplete)         :: 111 of 151
            Pseudo Genes (internal stop)      :: 27 of 151
            Pseudo Genes (multiple problems)  :: 37 of 151
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5003147
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CRE78"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /geo_loc_name="China: Guangdong, Shenzhen"
                     /lat_lon="22.45 N 113.52 E"
                     /collection_date="2023-04-24"
                     /collected_by="Shenzhen Hospital, Southern Medical
                     University"
WGS         JBUXPZ010000001-JBUXPZ010000055
WGS_SCAFLD  NZ_JBUXPZ010000001-NZ_JBUXPZ010000055
//
LOCUS       NZ_JBPGXB010000000   8441682 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhizobium sp. KNZ14-9A, whole genome shotgun sequencing project.
ACCESSION   NZ_JBPGXB000000000
VERSION     NZ_JBPGXB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941048
            Assembly: GCF_056755015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhizobium sp. KNZ14-9A
  ORGANISM  Rhizobium sp. KNZ14-9A
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Rhizobium.
REFERENCE   1  (bases 1 to 8441682)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8441682)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGXB000000000.1.
            The Rhizobium sp. KNZ14-9A whole genome shotgun (WGS) project has
            the project accession NZ_JBPGXB000000000.  This version of the
            project (01) has the accession number NZ_JBPGXB010000000, and
            consists of sequences JBPGXB010000001-JBPGXB010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 116x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755015.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:14:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8,389
            CDSs (total)                      :: 8,321
            Genes (coding)                    :: 8,020
            CDSs (with protein)               :: 8,020
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 301
            CDSs (without protein)            :: 301
            Pseudo Genes (ambiguous residues) :: 0 of 301
            Pseudo Genes (frameshifted)       :: 158 of 301
            Pseudo Genes (incomplete)         :: 189 of 301
            Pseudo Genes (internal stop)      :: 14 of 301
            Pseudo Genes (multiple problems)  :: 58 of 301
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8441682
                     /organism="Rhizobium sp. KNZ14-9A"
                     /mol_type="genomic DNA"
                     /strain="KNZ14-9A"
                     /db_xref="taxon:3416692"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBPGXB010000001-JBPGXB010000004
WGS_SCAFLD  NZ_JBPGXB010000001-NZ_JBPGXB010000004
//
LOCUS       NZ_JBPGXD010000000   7595489 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Rhizobium lusitanum strain TLI7-10B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBPGXD000000000
VERSION     NZ_JBPGXD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941080
            Assembly: GCF_056755075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Rhizobium lusitanum
  ORGANISM  Rhizobium lusitanum
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Rhizobium.
REFERENCE   1  (bases 1 to 7595489)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7595489)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGXD000000000.1.
            The Rhizobium lusitanum whole genome shotgun (WGS) project has the
            project accession NZ_JBPGXD000000000.  This version of the project
            (01) has the accession number NZ_JBPGXD010000000, and consists of
            sequences JBPGXD010000001-JBPGXD010000691.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 187x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755075.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:03:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,682
            CDSs (total)                      :: 7,623
            Genes (coding)                    :: 7,242
            CDSs (with protein)               :: 7,242
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 6 (16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 381
            CDSs (without protein)            :: 381
            Pseudo Genes (ambiguous residues) :: 0 of 381
            Pseudo Genes (frameshifted)       :: 88 of 381
            Pseudo Genes (incomplete)         :: 333 of 381
            Pseudo Genes (internal stop)      :: 38 of 381
            Pseudo Genes (multiple problems)  :: 70 of 381
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7595489
                     /organism="Rhizobium lusitanum"
                     /mol_type="genomic DNA"
                     /strain="TLI7-10B"
                     /db_xref="taxon:293958"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBPGXD010000001-JBPGXD010000691
WGS_SCAFLD  NZ_JBPGXD010000001-NZ_JBPGXD010000691
//
LOCUS       NZ_WNZJ01000000      4058864 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain 77N, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WNZJ00000000
VERSION     NZ_WNZJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13387474
            Assembly: GCF_009728255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4058864)
  AUTHORS   Bobrysheva,O.V., Pisarenko,S.V., Kovalev,D.A., Shapakov,N.A.,
            Siritsa,Y.V., Savel'Eva,I.V., Savel'Ev,V.N., Zhyrov,A.M.,
            Vasilieva,O.V., Serdyuk,N.S., Ulshina,D.V., Kuznetsova,I.V.,
            Konyaeva,O.A., Zhilchenko,E.B. and Kulichenko,A.N.
  TITLE     Vibrio cholerae str. 77N
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4058864)
  AUTHORS   Bobrysheva,O.V., Pisarenko,S.V., Kovalev,D.A., Shapakov,N.A.,
            Siritsa,Y.V., Savel'Eva,I.V., Savel'Ev,V.N., Zhyrov,A.M.,
            Vasilieva,O.V., Serdyuk,N.S., Ulshina,D.V., Kuznetsova,I.V.,
            Konyaeva,O.A., Zhilchenko,E.B. and Kulichenko,A.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2019) The Federal Service for Supervision of
            Consumer Rights Protection and Human Welfare, Stavropol Plague
            Control Reseach Institute, Sovetskaya Str. 13-15, Stavropol 355035,
            Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WNZJ00000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_WNZJ00000000.  This version of the project
            (01) has the accession number NZ_WNZJ01000000, and consists of
            sequences WNZJ01000001-WNZJ01000102.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Stavropol Plague Control
            Reseach Institute.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: Newbler v. 3.0
            Assembly Name          :: V_cholerae_str_77N
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009728255.1-RS_2025_11_24
            Annotation Date                   :: 11/24/2025 09:15:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,715
            CDSs (total)                      :: 3,642
            Genes (coding)                    :: 3,472
            CDSs (with protein)               :: 3,472
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 170
            CDSs (without protein)            :: 170
            Pseudo Genes (ambiguous residues) :: 0 of 170
            Pseudo Genes (frameshifted)       :: 130 of 170
            Pseudo Genes (incomplete)         :: 35 of 170
            Pseudo Genes (internal stop)      :: 17 of 170
            Pseudo Genes (multiple problems)  :: 10 of 170
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4058864
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="77N"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /geo_loc_name="Russia"
WGS         WNZJ01000001-WNZJ01000102
WGS_SCAFLD  NZ_WNZJ01000001-NZ_WNZJ01000102
//
LOCUS       NZ_PJZT01000000      2989971 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus faecium strain VREF002, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PJZT00000000
VERSION     NZ_PJZT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08196782
            Assembly: GCF_002859005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus faecium
  ORGANISM  Enterococcus faecium
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2989971)
  AUTHORS   Lemonidis,K., Salih,T.S., Dancer,S.J., Hunter,I.S. and Tucker,N.P.
  TITLE     Missing pstS locus associated with an insertion in tetM in
            vancomycin resistant Enterococcus faecium
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2989971)
  AUTHORS   Lemonidis,K., Salih,T.S., Dancer,S.J., Hunter,I.S. and Tucker,N.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2017) SIPBS, University of Strathclyde, 161
            Cathedral street, Glasgow G4 0RE, United Kingdom (Great Britain)
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PJZT00000000.1.
            The Enterococcus faecium whole genome shotgun (WGS) project has the
            project accession NZ_PJZT00000000.  This version of the project
            (01) has the accession number NZ_PJZT01000000, and consists of
            sequences PJZT01000001-PJZT01000185.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 131.85x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002859005.1-RS_2026_03_31
            Annotation Date                   :: 03/31/2026 04:20:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,997
            CDSs (total)                      :: 2,952
            Genes (coding)                    :: 2,719
            CDSs (with protein)               :: 2,719
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 121 of 233
            Pseudo Genes (incomplete)         :: 105 of 233
            Pseudo Genes (internal stop)      :: 20 of 233
            Pseudo Genes (multiple problems)  :: 11 of 233
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989971
                     /organism="Enterococcus faecium"
                     /mol_type="genomic DNA"
                     /strain="VREF002"
                     /isolation_source="Hairmyres Hospital"
                     /host="Homo sapiens"
                     /db_xref="taxon:1352"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="55.7582 N 4.2298 W"
                     /collection_date="2017-02-11"
                     /collected_by="Hairmyres Hospital"
WGS         PJZT01000001-PJZT01000185
WGS_SCAFLD  NZ_PJZT01000001-NZ_PJZT01000185
//
LOCUS       NZ_LRAF01000000      4124381 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae O1 biovar El Tor strain M1275, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LRAF00000000
VERSION     NZ_LRAF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04417215
            Assembly: GCF_001517845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae O1 biovar El Tor
  ORGANISM  Vibrio cholerae O1 biovar El Tor
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4124381)
  AUTHORS   Plekhanov,N., Zadnova,S., Krepostnova,I. and Smirnova,N.
  TITLE     Vibrio cholerae O1 biovar El Tor str. M1275 whole genome shotgun
            sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4124381)
  AUTHORS   Plekhanov,N., Zadnova,S., Krepostnova,I. and Smirnova,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2016) Microbiology, Russian Research Anti-Plague
            Institute 'Microbe', Universitetskaya, Saratov 410005, Russian
            Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LRAF00000000.1.
            The Vibrio cholerae O1 biovar El Tor whole genome shotgun (WGS)
            project has the project accession NZ_LRAF00000000.  This version of
            the project (01) has the accession number NZ_LRAF01000000, and
            consists of sequences LRAF01000001-LRAF01000106.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2015
            Assembly Method        :: Newbler v. 2.6
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 48.0x
            Sequencing Technology  :: IonTorrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001517845.1-RS_2025_12_01
            Annotation Date                   :: 12/01/2025 09:00:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.10
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,796
            CDSs (total)                      :: 3,723
            Genes (coding)                    :: 3,556
            CDSs (with protein)               :: 3,556
            Genes (RNA)                       :: 73
            rRNAs                             :: 4, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 124 of 167
            Pseudo Genes (incomplete)         :: 43 of 167
            Pseudo Genes (internal stop)      :: 13 of 167
            Pseudo Genes (multiple problems)  :: 11 of 167
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4124381
                     /organism="Vibrio cholerae O1 biovar El Tor"
                     /mol_type="genomic DNA"
                     /strain="M1275"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:686"
                     /geo_loc_name="Russia: Dagestan"
                     /lat_lon="42.52 N 47.37000000 E"
                     /collection_date="1993"
                     /collected_by="Russian Research Anti-Plague Institute
                     'Microbe'"
                     /serogroup="O1"
                     /biovar="El Tor"
                     /genotype="ctxA+, ctxB1+, zot+, ace+, cep+, orfU+,
                     rstRClass+/rstREltor+, rstA+, rstB+, rstC+, VPI-1 (mop+,
                     tcpAEltor+, tcpB+, aldA+, tcpH+, tcpP+, toxT+), VPI-2
                     (hel1760+, nanH+, rep1803+), mshA+, attRS+, toxR+, rtxA+,
                     hapA+,VSP-I (vspId+, vspI-80+, vspI-81+), VSP-II (vc0514+,
                     vc0502+)"
WGS         LRAF01000001-LRAF01000106
WGS_SCAFLD  NZ_LRAF01000001-NZ_LRAF01000106
//
LOCUS       NZ_LDTR01000000      2563869 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NS346, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LDTR00000000
VERSION     NZ_LDTR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03401355
            Assembly: GCF_001476975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2563869)
  AUTHORS   Midha,S., Bansal,K., Sharma,S., Kumar,N., Patil,P.P., Chaudhry,V.
            and Patil,P.B.
  TITLE     Genomic Resource of Rice Seed Associated Bacteria
  JOURNAL   Front Microbiol 6, 1551 (2016)
   PUBMED   26793183
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563869)
  AUTHORS   Midha,S., Bansal,K., Chaudhry,V., Sharma,S., Kumar,N., Patil,P.P.
            and Patil,P.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2015) Bacterial Genomics and Evolution
            Laboratory, CSIR-Institute of Microbial Technology, Sector 39A,
            Chandigarh, Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LDTR00000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_LDTR00000000.  This version of the project
            (01) has the accession number NZ_LDTR01000000, and consists of
            sequences LDTR01000001-LDTR01000087.
            Source DNA available from Bacterial Genomics and Evolutionary
            Laboratory, CSIR-Institute of Microbial Technology, Chandigarh,
            India.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench v. 7.5
            Genome Coverage       :: 96x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001476975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:29:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,546
            CDSs (total)                      :: 2,485
            Genes (coding)                    :: 2,425
            CDSs (with protein)               :: 2,425
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 20 of 60
            Pseudo Genes (incomplete)         :: 32 of 60
            Pseudo Genes (internal stop)      :: 19 of 60
            Pseudo Genes (multiple problems)  :: 11 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563869
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NS346"
                     /host="Oryza sativa"
                     /db_xref="taxon:1292"
                     /geo_loc_name="India"
                     /collection_date="2013"
WGS         LDTR01000001-LDTR01000087
WGS_SCAFLD  NZ_LDTR01000001-NZ_LDTR01000087
//
LOCUS       NZ_LDTS01000000      2549441 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain SA10, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LDTS00000000
VERSION     NZ_LDTS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03401353
            Assembly: GCF_001477375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2549441)
  AUTHORS   Midha,S., Bansal,K., Sharma,S., Kumar,N., Patil,P.P., Chaudhry,V.
            and Patil,P.B.
  TITLE     Genomic Resource of Rice Seed Associated Bacteria
  JOURNAL   Front Microbiol 6, 1551 (2016)
   PUBMED   26793183
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549441)
  AUTHORS   Midha,S., Bansal,K., Chaudhry,V., Sharma,S., Kumar,N., Patil,P.P.
            and Patil,P.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-APR-2015) Bacterial Genomics and Evolution
            Laboratory, CSIR-Institute of Microbial Technology, Sector 39A,
            Chandigarh, Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LDTS00000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_LDTS00000000.  This version of the project
            (01) has the accession number NZ_LDTS01000000, and consists of
            sequences LDTS01000001-LDTS01000145.
            Source DNA available from Bacterial Genomics and Evolutionary
            Laboratory, CSIR-Institute of Microbial Technology, Chandigarh,
            India.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench v. 7.5
            Genome Coverage       :: 84x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001477375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:40:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,580
            CDSs (total)                      :: 2,514
            Genes (coding)                    :: 2,449
            CDSs (with protein)               :: 2,449
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3, 2 (5S, 16S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 16 of 65
            Pseudo Genes (incomplete)         :: 42 of 65
            Pseudo Genes (internal stop)      :: 16 of 65
            Pseudo Genes (multiple problems)  :: 9 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549441
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="SA10"
                     /host="Oryza sativa"
                     /db_xref="taxon:1292"
                     /geo_loc_name="India"
                     /collection_date="2012"
WGS         LDTS01000001-LDTS01000145
WGS_SCAFLD  NZ_LDTS01000001-NZ_LDTS01000145
//
LOCUS       NZ_PRDQ01000000      2660157 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius strain MRSP 424, whole genome
            shotgun sequencing project.
ACCESSION   NZ_PRDQ00000000
VERSION     NZ_PRDQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08475774
            Assembly: GCF_002976305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2660157)
  AUTHORS   Jones,L., Davis,M., Shah,D. and Paul,N.
  TITLE     Evaluation of genotyping methods for Staphylococcus
            pseudintermedius at local, regional and global scales
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2660157)
  AUTHORS   Jones,L., Davis,M., Shah,D. and Paul,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2018) Global Animal Health, Washington State
            University, 240 Ott Rd, Pullman, WA 99164, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PRDQ00000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_PRDQ00000000.  This version of
            the project (01) has the accession number NZ_PRDQ01000000, and
            consists of sequences PRDQ01000001-PRDQ01000043.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-DEC-2017
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002976305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:56:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,570
            CDSs (total)                      :: 2,502
            Genes (coding)                    :: 2,443
            CDSs (with protein)               :: 2,443
            Genes (RNA)                       :: 68
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 13 of 59
            Pseudo Genes (incomplete)         :: 44 of 59
            Pseudo Genes (internal stop)      :: 12 of 59
            Pseudo Genes (multiple problems)  :: 10 of 59
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660157
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="MRSP 424"
                     /isolation_source="wound"
                     /host="canine"
                     /db_xref="taxon:283734"
                     /geo_loc_name="USA: Washington State"
                     /collection_date="2012"
                     /genotype="MLST 924"
WGS         PRDQ01000001-PRDQ01000043
WGS_SCAFLD  NZ_PRDQ01000001-NZ_PRDQ01000043
//
LOCUS       NZ_QXUQ01000000      2813110 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus simulans strain SNUC 3896, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXUQ00000000
VERSION     NZ_QXUQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173182
            Assembly: GCF_003580215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus simulans
  ORGANISM  Staphylococcus simulans
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2813110)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2813110)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXUQ00000000.1.
            The Staphylococcus simulans whole genome shotgun (WGS) project has
            the project accession NZ_QXUQ00000000.  This version of the project
            (01) has the accession number NZ_QXUQ01000000, and consists of
            sequences QXUQ01000001-QXUQ01000564.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003580215.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:23:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,016
            CDSs (total)                      :: 2,937
            Genes (coding)                    :: 2,795
            CDSs (with protein)               :: 2,795
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 64
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 0 of 143
            Pseudo Genes (frameshifted)       :: 9 of 143
            Pseudo Genes (incomplete)         :: 119 of 143
            Pseudo Genes (internal stop)      :: 20 of 143
            Pseudo Genes (multiple problems)  :: 5 of 143
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2813110
                     /organism="Staphylococcus simulans"
                     /mol_type="genomic DNA"
                     /strain="SNUC 3896"
                     /isolation_source="Herd 209"
                     /host="Bos taurus"
                     /db_xref="taxon:1286"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-08-20"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXUQ01000001-QXUQ01000564
WGS_SCAFLD  NZ_QXUQ01000001-NZ_QXUQ01000564
//
LOCUS       NZ_QXUE01000000      2889283 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus shinii strain SNUC 4555, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXUE00000000
VERSION     NZ_QXUE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173243
            Assembly: GCF_003578795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus shinii
  ORGANISM  Staphylococcus shinii
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2889283)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2889283)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXUE00000000.1.
            The Staphylococcus shinii whole genome shotgun (WGS) project has
            the project accession NZ_QXUE00000000.  This version of the project
            (01) has the accession number NZ_QXUE01000000, and consists of
            sequences QXUE01000001-QXUE01000816.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 23x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:27:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,984
            CDSs (total)                      :: 2,919
            Genes (coding)                    :: 2,743
            CDSs (with protein)               :: 2,743
            Genes (RNA)                       :: 65
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 176
            CDSs (without protein)            :: 176
            Pseudo Genes (ambiguous residues) :: 0 of 176
            Pseudo Genes (frameshifted)       :: 21 of 176
            Pseudo Genes (incomplete)         :: 143 of 176
            Pseudo Genes (internal stop)      :: 31 of 176
            Pseudo Genes (multiple problems)  :: 17 of 176
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2889283
                     /organism="Staphylococcus shinii"
                     /mol_type="genomic DNA"
                     /strain="SNUC 4555"
                     /isolation_source="Herd 221"
                     /host="Bos taurus"
                     /db_xref="taxon:2912228"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2008-03-17"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXUE01000001-QXUE01000816
WGS_SCAFLD  NZ_QXUE01000001-NZ_QXUE01000816
//
LOCUS       NZ_QMHR01000000      2655697 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius strain MI 14-4353, whole genome
            shotgun sequencing project.
ACCESSION   NZ_QMHR00000000
VERSION     NZ_QMHR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09489157
            Assembly: GCF_007050485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2655697)
  AUTHORS   Abouelkhair,M.A., Bemis,D.A. and Kania,S.A.
  TITLE     Complete genome sequence of Staphylococcus pseudintermedius
            isolates from Equine
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2655697)
  AUTHORS   Abouelkhair,M.A., Bemis,D.A. and Kania,S.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2018) Biomedical and Diagnostic science,
            University of Tennessee, 2407 River Dr., Knoxville, TN 37996, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QMHR00000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_QMHR00000000.  This version of
            the project (01) has the accession number NZ_QMHR01000000, and
            consists of sequences QMHR01000001-QMHR01000034.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: GS De Novo Assembler v. 11.0.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007050485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:32:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,597
            CDSs (total)                      :: 2,515
            Genes (coding)                    :: 2,454
            CDSs (with protein)               :: 2,454
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 16S)
            partial rRNAs                     :: 5, 6 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 19 of 61
            Pseudo Genes (incomplete)         :: 44 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 17 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655697
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="MI 14-4353"
                     /isolation_source="bone"
                     /host="horse"
                     /db_xref="taxon:283734"
                     /geo_loc_name="USA"
                     /collection_date="2014"
WGS         QMHR01000001-QMHR01000034
WGS_SCAFLD  NZ_QMHR01000001-NZ_QMHR01000034
//
LOCUS       NZ_CAJESE010000000   2560330 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius isolate 17S01340-1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAJESE000000000
VERSION     NZ_CAJESE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7087027
            Assembly: GCF_903992015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2560330)
  AUTHORS   Van Der Graaf,L., Duim,B. and Zomer,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2020) UTRECHT UNIVERSITY, Clinical Infectiology,
            Yalelaan 1, 3584 CL, Utrecht, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJESE000000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_CAJESE000000000.  This version
            of the project (01) has the accession number NZ_CAJESE010000000,
            and consists of sequences CAJESE010000001-CAJESE010000057.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903992015.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:05:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,498
            CDSs (total)                      :: 2,436
            Genes (coding)                    :: 2,382
            CDSs (with protein)               :: 2,382
            Genes (RNA)                       :: 62
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6, 2 (5S, 16S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 17 of 54
            Pseudo Genes (incomplete)         :: 41 of 54
            Pseudo Genes (internal stop)      :: 11 of 54
            Pseudo Genes (multiple problems)  :: 12 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2560330
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /isolate="17S01340-1"
                     /isolation_source="dog"
                     /db_xref="taxon:283734"
WGS         CAJESE010000001-CAJESE010000057
WGS_SCAFLD  NZ_CAJESE010000001-NZ_CAJESE010000057
//
LOCUS       NZ_JAKRKG010000000   2522674 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain P8-10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKRKG000000000
VERSION     NZ_JAKRKG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24838656
            Assembly: GCF_022568955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2522674)
  AUTHORS   Flannagan,R.S., Brozyna,J.R., Kumar,B., Adolf,L.A., Power,J.J.,
            Heilbronner,S. and Heinrichs,D.E.
  TITLE     In vivo growth of Staphylococcus lugdunensis is facilitated by the
            concerted function of heme and non-heme iron acquisition mechanisms
  JOURNAL   J Biol Chem 298 (5), 101823 (2022)
   PUBMED   35283192
REFERENCE   2  (bases 1 to 2522674)
  AUTHORS   Power,J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2022) Infection Biology, CMFI, Auf der
            Morgenstelle 28/E8, Tuebingen, Baden-Wuerttemberg 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKRKG000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JAKRKG000000000.  This version of the
            project (01) has the accession number NZ_JAKRKG010000000, and
            consists of sequences JAKRKG010000001-JAKRKG010000042.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2022
            Assembly Method        :: nf-core/bacass v. 2.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 133x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022568955.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:36:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,437
            CDSs (total)                      :: 2,374
            Genes (coding)                    :: 2,330
            CDSs (with protein)               :: 2,330
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 16 of 44
            Pseudo Genes (incomplete)         :: 28 of 44
            Pseudo Genes (internal stop)      :: 9 of 44
            Pseudo Genes (multiple problems)  :: 7 of 44
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522674
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="P8-10"
                     /isolation_source="Nasal cavity"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="Germany: Tuebingen"
                     /collection_date="2016-07"
WGS         JAKRKG010000001-JAKRKG010000042
WGS_SCAFLD  NZ_JAKRKG010000001-NZ_JAKRKG010000042
//
LOCUS       NZ_JALCWS010000000   2217530 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain acrmm, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCWS000000000
VERSION     NZ_JALCWS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962516
            Assembly: GCF_022689785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2217530)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2217530)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCWS000000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_JALCWS000000000.  This version of the
            project (01) has the accession number NZ_JALCWS010000000, and
            consists of sequences JALCWS010000001-JALCWS010000031.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 86x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689785.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:41:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,227
            CDSs (total)                      :: 2,183
            Genes (coding)                    :: 2,130
            CDSs (with protein)               :: 2,130
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 15 of 53
            Pseudo Genes (incomplete)         :: 39 of 53
            Pseudo Genes (internal stop)      :: 16 of 53
            Pseudo Genes (multiple problems)  :: 13 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217530
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="acrmm"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCWS010000001-JALCWS010000031
WGS_SCAFLD  NZ_JALCWS010000001-NZ_JALCWS010000031
//
LOCUS       NZ_JBJYKA020000000   5564443 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sphingobium yanoikuyae strain A-TP, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBJYKA000000000
VERSION     NZ_JBJYKA000000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45767236
            Assembly: GCF_048977785.2
KEYWORDS    WGS; RefSeq.
SOURCE      Sphingobium yanoikuyae (Sphingomonas yanoikuyae)
  ORGANISM  Sphingobium yanoikuyae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingobiaceae; Sphingobium.
REFERENCE   1  (bases 1 to 5564443)
  AUTHORS   Jankovic,N., De Castro,G.M., Torres,A.L.Q., Moreia,R.C.,
            Uliano-Silva,M., Souza De Conceicao,C., Coelho,V., Americo,J.A.,
            Bicas,J.L. and Rebelo,M.F.
  TITLE     Functional analysis of Sphingobium yanoikuyae A-TP genome reveals
            genes for utilization of limonene, alpha-pinene, and citronellol
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5564443)
  AUTHORS   Jankovic,N., Rebelo,M.F., Uliano-Silva,M. and Torres,A.L.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2024) Biophysics Department, Carlos Chagas Filho
            Institute of Biophysics, Avenica Carlos Chagas Filho, 791, Rio de
            Janeiero, Outside U.S. & Canada 21941-904, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJYKA000000000.1.
            
            On Apr 20, 2026 this sequence version replaced
            NZ_JBJYKA000000000.1.
            The Sphingobium yanoikuyae whole genome shotgun (WGS) project has
            the project accession NZ_JBJYKA000000000.  This version of the
            project (02) has the accession number NZ_JBJYKA020000000, and
            consists of sequences JBJYKA020000001-JBJYKA020000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Juliano Lemos Bicas,
            Departamento de Ciencia de Alimentos, Faculdade de Engenharia de
            Alimentos Universidade Estadual de Campinas Rua Monteiro Lobato, 80
            Cidade Universitaria Campinas - SP, Brasil 13.083-862.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2019
            Assembly Method        :: SPAdes v. 11-2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048977785.2-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 02:31:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,468
            CDSs (total)                      :: 5,401
            Genes (coding)                    :: 5,298
            CDSs (with protein)               :: 5,298
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 7, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 23 of 103
            Pseudo Genes (incomplete)         :: 83 of 103
            Pseudo Genes (internal stop)      :: 12 of 103
            Pseudo Genes (multiple problems)  :: 12 of 103
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5564443
                     /organism="Sphingobium yanoikuyae"
                     /mol_type="genomic DNA"
                     /strain="A-TP"
                     /isolation_source="Active sludge"
                     /culture_collection="NCIMB:11671"
                     /db_xref="taxon:13690"
                     /geo_loc_name="United Kingdom"
                     /collection_date="1982"
WGS         JBJYKA020000001-JBJYKA020000080
WGS_SCAFLD  NZ_JBJYKA020000001-NZ_JBJYKA020000080
//
LOCUS       NZ_JAKRKF010000000   2549897 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain P5-13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKRKF000000000
VERSION     NZ_JAKRKF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24838657
            Assembly: GCF_022568915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2549897)
  AUTHORS   Flannagan,R.S., Brozyna,J.R., Kumar,B., Adolf,L.A., Power,J.J.,
            Heilbronner,S. and Heinrichs,D.E.
  TITLE     In vivo growth of Staphylococcus lugdunensis is facilitated by the
            concerted function of heme and non-heme iron acquisition mechanisms
  JOURNAL   J Biol Chem 298 (5), 101823 (2022)
   PUBMED   35283192
REFERENCE   2  (bases 1 to 2549897)
  AUTHORS   Power,J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2022) Infection Biology, CMFI, Auf der
            Morgenstelle 28/E8, Tuebingen, Baden-Wuerttemberg 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKRKF000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JAKRKF000000000.  This version of the
            project (01) has the accession number NZ_JAKRKF010000000, and
            consists of sequences JAKRKF010000001-JAKRKF010000032.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2022
            Assembly Method        :: nf-core/bacass v. 2.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 173x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022568915.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:38:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,463
            CDSs (total)                      :: 2,402
            Genes (coding)                    :: 2,359
            CDSs (with protein)               :: 2,359
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2 (16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 15 of 43
            Pseudo Genes (incomplete)         :: 25 of 43
            Pseudo Genes (internal stop)      :: 9 of 43
            Pseudo Genes (multiple problems)  :: 5 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549897
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="P5-13"
                     /isolation_source="Nasal cavity"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="Germany: Tuebingen"
                     /collection_date="2016-07"
WGS         JAKRKF010000001-JAKRKF010000032
WGS_SCAFLD  NZ_JAKRKF010000001-NZ_JAKRKF010000032
//
LOCUS       NZ_PZAE01000000      2291877 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 2460, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAE00000000
VERSION     NZ_PZAE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172927
            Assembly: GCF_003036305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2291877)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2291877)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAE00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAE00000000.  This version of the
            project (01) has the accession number NZ_PZAE01000000, and consists
            of sequences PZAE01000001-PZAE01000063.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 51x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:48:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,301
            CDSs (total)                      :: 2,220
            Genes (coding)                    :: 2,164
            CDSs (with protein)               :: 2,164
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 7, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 23S)
            partial rRNAs                     :: 7, 4 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 20 of 56
            Pseudo Genes (incomplete)         :: 40 of 56
            Pseudo Genes (internal stop)      :: 6 of 56
            Pseudo Genes (multiple problems)  :: 8 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291877
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 2460"
                     /isolation_source="Herd 417"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2007-04-02"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAE01000001-PZAE01000063
WGS_SCAFLD  NZ_PZAE01000001-NZ_PZAE01000063
//
LOCUS       NZ_JALCXI010000000   2545213 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnf, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXI000000000
VERSION     NZ_JALCXI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962535
            Assembly: GCF_022689425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2545213)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2545213)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXI000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXI000000000.  This version of the
            project (01) has the accession number NZ_JALCXI010000000, and
            consists of sequences JALCXI010000001-JALCXI010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689425.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:39:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,440
            CDSs (total)                      :: 2,383
            Genes (coding)                    :: 2,333
            CDSs (with protein)               :: 2,333
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 18 of 50
            Pseudo Genes (incomplete)         :: 25 of 50
            Pseudo Genes (internal stop)      :: 16 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545213
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnf"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXI010000001-JALCXI010000038
WGS_SCAFLD  NZ_JALCXI010000001-NZ_JALCXI010000038
//
LOCUS       NZ_JALCXR010000000   2571640 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnu, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXR000000000
VERSION     NZ_JALCXR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962550
            Assembly: GCF_022689225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2571640)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2571640)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXR000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXR000000000.  This version of the
            project (01) has the accession number NZ_JALCXR010000000, and
            consists of sequences JALCXR010000001-JALCXR010000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 82x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689225.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:44:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,504
            CDSs (total)                      :: 2,458
            Genes (coding)                    :: 2,415
            CDSs (with protein)               :: 2,415
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 10 of 43
            Pseudo Genes (incomplete)         :: 34 of 43
            Pseudo Genes (internal stop)      :: 4 of 43
            Pseudo Genes (multiple problems)  :: 5 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571640
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnu"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXR010000001-JALCXR010000043
WGS_SCAFLD  NZ_JALCXR010000001-NZ_JALCXR010000043
//
LOCUS       NZ_PZCJ01000000      2292203 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 114, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCJ00000000
VERSION     NZ_PZCJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172874
            Assembly: GCF_003039755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2292203)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292203)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCJ00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCJ00000000.  This version of the
            project (01) has the accession number NZ_PZCJ01000000, and consists
            of sequences PZCJ01000001-PZCJ01000069.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039755.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:49:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,304
            CDSs (total)                      :: 2,224
            Genes (coding)                    :: 2,176
            CDSs (with protein)               :: 2,176
            Genes (RNA)                       :: 80
            rRNAs                             :: 5, 8, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 7, 3 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 16 of 48
            Pseudo Genes (incomplete)         :: 29 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 6 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292203
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 114"
                     /isolation_source="Herd 108"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-03-05"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCJ01000001-PZCJ01000069
WGS_SCAFLD  NZ_PZCJ01000001-NZ_PZCJ01000069
//
LOCUS       NZ_JALCXF010000000   2525960 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrna, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXF000000000
VERSION     NZ_JALCXF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962530
            Assembly: GCF_022689485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2525960)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2525960)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXF000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXF000000000.  This version of the
            project (01) has the accession number NZ_JALCXF010000000, and
            consists of sequences JALCXF010000001-JALCXF010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:41:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,425
            CDSs (total)                      :: 2,381
            Genes (coding)                    :: 2,343
            CDSs (with protein)               :: 2,343
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 3, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 8 of 38
            Pseudo Genes (incomplete)         :: 31 of 38
            Pseudo Genes (internal stop)      :: 4 of 38
            Pseudo Genes (multiple problems)  :: 5 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525960
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrna"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXF010000001-JALCXF010000054
WGS_SCAFLD  NZ_JALCXF010000001-NZ_JALCXF010000054
//
LOCUS       NZ_PZBZ01000000      2304652 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 505, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZBZ00000000
VERSION     NZ_PZBZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172886
            Assembly: GCF_003039635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2304652)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304652)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZBZ00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZBZ00000000.  This version of the
            project (01) has the accession number NZ_PZBZ01000000, and consists
            of sequences PZBZ01000001-PZBZ01000145.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 43x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:56:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,326
            CDSs (total)                      :: 2,246
            Genes (coding)                    :: 2,197
            CDSs (with protein)               :: 2,197
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 6, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 4 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 8 of 49
            Pseudo Genes (incomplete)         :: 38 of 49
            Pseudo Genes (internal stop)      :: 7 of 49
            Pseudo Genes (multiple problems)  :: 4 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304652
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 505"
                     /isolation_source="Herd 111"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-08-09"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZBZ01000001-PZBZ01000145
WGS_SCAFLD  NZ_PZBZ01000001-NZ_PZBZ01000145
//
LOCUS       NZ_JALCXQ010000000   2544697 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnh, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXQ000000000
VERSION     NZ_JALCXQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962537
            Assembly: GCF_022689285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2544697)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2544697)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXQ000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXQ000000000.  This version of the
            project (01) has the accession number NZ_JALCXQ010000000, and
            consists of sequences JALCXQ010000001-JALCXQ010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689285.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:41:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,430
            CDSs (total)                      :: 2,383
            Genes (coding)                    :: 2,334
            CDSs (with protein)               :: 2,334
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 17 of 49
            Pseudo Genes (incomplete)         :: 25 of 49
            Pseudo Genes (internal stop)      :: 16 of 49
            Pseudo Genes (multiple problems)  :: 7 of 49
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2544697
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnh"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXQ010000001-JALCXQ010000032
WGS_SCAFLD  NZ_JALCXQ010000001-NZ_JALCXQ010000032
//
LOCUS       NZ_JALCXY010000000   2544169 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnn, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXY000000000
VERSION     NZ_JALCXY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962543
            Assembly: GCF_022689125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2544169)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2544169)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXY000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXY000000000.  This version of the
            project (01) has the accession number NZ_JALCXY010000000, and
            consists of sequences JALCXY010000001-JALCXY010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 84x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689125.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:44:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,442
            CDSs (total)                      :: 2,387
            Genes (coding)                    :: 2,337
            CDSs (with protein)               :: 2,337
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 17 of 50
            Pseudo Genes (incomplete)         :: 26 of 50
            Pseudo Genes (internal stop)      :: 16 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2544169
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnn"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXY010000001-JALCXY010000038
WGS_SCAFLD  NZ_JALCXY010000001-NZ_JALCXY010000038
//
LOCUS       NZ_PYZU01000000      2323362 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 4613, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PYZU00000000
VERSION     NZ_PYZU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172939
            Assembly: GCF_003040055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2323362)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323362)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PYZU00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PYZU00000000.  This version of the
            project (01) has the accession number NZ_PYZU01000000, and consists
            of sequences PYZU01000001-PYZU01000040.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 192x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040055.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:53:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,334
            CDSs (total)                      :: 2,254
            Genes (coding)                    :: 2,202
            CDSs (with protein)               :: 2,202
            Genes (RNA)                       :: 80
            rRNAs                             :: 7, 9, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 16 of 52
            Pseudo Genes (incomplete)         :: 35 of 52
            Pseudo Genes (internal stop)      :: 4 of 52
            Pseudo Genes (multiple problems)  :: 3 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323362
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 4613"
                     /isolation_source="Herd 223"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2008-02-07"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PYZU01000001-PYZU01000040
WGS_SCAFLD  NZ_PYZU01000001-NZ_PYZU01000040
//
LOCUS       NZ_JALCXX010000000   2545411 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnm, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXX000000000
VERSION     NZ_JALCXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962542
            Assembly: GCF_022689165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2545411)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2545411)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXX000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXX000000000.  This version of the
            project (01) has the accession number NZ_JALCXX010000000, and
            consists of sequences JALCXX010000001-JALCXX010000034.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 85x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689165.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:42:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,438
            CDSs (total)                      :: 2,382
            Genes (coding)                    :: 2,333
            CDSs (with protein)               :: 2,333
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 17 of 49
            Pseudo Genes (incomplete)         :: 25 of 49
            Pseudo Genes (internal stop)      :: 16 of 49
            Pseudo Genes (multiple problems)  :: 7 of 49
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545411
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnm"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXX010000001-JALCXX010000034
WGS_SCAFLD  NZ_JALCXX010000001-NZ_JALCXX010000034
//
LOCUS       NZ_PZBY01000000      2320835 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 544, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZBY00000000
VERSION     NZ_PZBY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172887
            Assembly: GCF_003039615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2320835)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320835)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZBY00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZBY00000000.  This version of the
            project (01) has the accession number NZ_PZBY01000000, and consists
            of sequences PZBY01000001-PZBY01000046.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:56:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,323
            CDSs (total)                      :: 2,242
            Genes (coding)                    :: 2,189
            CDSs (with protein)               :: 2,189
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 11, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 10 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 15 of 53
            Pseudo Genes (incomplete)         :: 37 of 53
            Pseudo Genes (internal stop)      :: 8 of 53
            Pseudo Genes (multiple problems)  :: 7 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320835
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 544"
                     /isolation_source="Herd 111"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-09-16"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZBY01000001-PZBY01000046
WGS_SCAFLD  NZ_PZBY01000001-NZ_PZBY01000046
//
LOCUS       NZ_JALCXP010000000   2577616 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnp, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXP000000000
VERSION     NZ_JALCXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962545
            Assembly: GCF_022689305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2577616)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2577616)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXP000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXP000000000.  This version of the
            project (01) has the accession number NZ_JALCXP010000000, and
            consists of sequences JALCXP010000001-JALCXP010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 87x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:39:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,500
            CDSs (total)                      :: 2,442
            Genes (coding)                    :: 2,403
            CDSs (with protein)               :: 2,403
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 3, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 9 of 39
            Pseudo Genes (incomplete)         :: 31 of 39
            Pseudo Genes (internal stop)      :: 4 of 39
            Pseudo Genes (multiple problems)  :: 5 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577616
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnp"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXP010000001-JALCXP010000032
WGS_SCAFLD  NZ_JALCXP010000001-NZ_JALCXP010000032
//
LOCUS       NZ_JALCXH010000000   2545328 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrne, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXH000000000
VERSION     NZ_JALCXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962534
            Assembly: GCF_022689465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2545328)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2545328)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXH000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXH000000000.  This version of the
            project (01) has the accession number NZ_JALCXH010000000, and
            consists of sequences JALCXH010000001-JALCXH010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689465.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:51:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,450
            CDSs (total)                      :: 2,394
            Genes (coding)                    :: 2,344
            CDSs (with protein)               :: 2,344
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 18 of 50
            Pseudo Genes (incomplete)         :: 25 of 50
            Pseudo Genes (internal stop)      :: 16 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545328
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrne"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXH010000001-JALCXH010000036
WGS_SCAFLD  NZ_JALCXH010000001-NZ_JALCXH010000036
//
LOCUS       NZ_JALCXC010000000   2575402 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrmz, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXC000000000
VERSION     NZ_JALCXC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962529
            Assembly: GCF_022689545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2575402)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2575402)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXC000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXC000000000.  This version of the
            project (01) has the accession number NZ_JALCXC010000000, and
            consists of sequences JALCXC010000001-JALCXC010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689545.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:50:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,481
            CDSs (total)                      :: 2,429
            Genes (coding)                    :: 2,381
            CDSs (with protein)               :: 2,381
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 5 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 11 of 48
            Pseudo Genes (incomplete)         :: 36 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575402
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrmz"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXC010000001-JALCXC010000036
WGS_SCAFLD  NZ_JALCXC010000001-NZ_JALCXC010000036
//
LOCUS       NZ_PYYM01000000      2879564 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus equorum strain SNUC 476, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PYYM00000000
VERSION     NZ_PYYM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173011
            Assembly: GCF_003035595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus equorum
  ORGANISM  Staphylococcus equorum
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2879564)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2879564)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PYYM00000000.1.
            The Staphylococcus equorum whole genome shotgun (WGS) project has
            the project accession NZ_PYYM00000000.  This version of the project
            (01) has the accession number NZ_PYYM01000000, and consists of
            sequences PYYM01000001-PYYM01000319.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 44x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003035595.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:55:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,956
            CDSs (total)                      :: 2,871
            Genes (coding)                    :: 2,780
            CDSs (with protein)               :: 2,780
            Genes (RNA)                       :: 85
            rRNAs                             :: 10, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 12 of 91
            Pseudo Genes (incomplete)         :: 79 of 91
            Pseudo Genes (internal stop)      :: 7 of 91
            Pseudo Genes (multiple problems)  :: 5 of 91
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879564
                     /organism="Staphylococcus equorum"
                     /mol_type="genomic DNA"
                     /strain="SNUC 476"
                     /isolation_source="Herd 110"
                     /host="Bos taurus"
                     /db_xref="taxon:246432"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2008-02-27"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PYYM01000001-PYYM01000319
WGS_SCAFLD  NZ_PYYM01000001-NZ_PYYM01000319
//
LOCUS       NZ_JALCXJ010000000   2542918 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrny, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXJ000000000
VERSION     NZ_JALCXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962554
            Assembly: GCF_022689445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2542918)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2542918)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXJ000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXJ000000000.  This version of the
            project (01) has the accession number NZ_JALCXJ010000000, and
            consists of sequences JALCXJ010000001-JALCXJ010000034.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689445.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:43:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,427
            CDSs (total)                      :: 2,381
            Genes (coding)                    :: 2,332
            CDSs (with protein)               :: 2,332
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 17 of 49
            Pseudo Genes (incomplete)         :: 25 of 49
            Pseudo Genes (internal stop)      :: 16 of 49
            Pseudo Genes (multiple problems)  :: 7 of 49
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542918
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrny"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXJ010000001-JALCXJ010000034
WGS_SCAFLD  NZ_JALCXJ010000001-NZ_JALCXJ010000034
//
LOCUS       NZ_PZBT01000000      2323190 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1062, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZBT00000000
VERSION     NZ_PZBT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172894
            Assembly: GCF_003039535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2323190)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323190)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZBT00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZBT00000000.  This version of the
            project (01) has the accession number NZ_PZBT01000000, and consists
            of sequences PZBT01000001-PZBT01000083.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039535.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:58:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,355
            CDSs (total)                      :: 2,272
            Genes (coding)                    :: 2,216
            CDSs (with protein)               :: 2,216
            Genes (RNA)                       :: 83
            rRNAs                             :: 6, 9, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8, 4 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 14 of 56
            Pseudo Genes (incomplete)         :: 39 of 56
            Pseudo Genes (internal stop)      :: 9 of 56
            Pseudo Genes (multiple problems)  :: 6 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323190
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1062"
                     /isolation_source="Herd 219"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-08-01"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZBT01000001-PZBT01000083
WGS_SCAFLD  NZ_PZBT01000001-NZ_PZBT01000083
//
LOCUS       NZ_JALCXG010000000   2535567 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnc, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXG000000000
VERSION     NZ_JALCXG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962532
            Assembly: GCF_022689495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2535567)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2535567)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXG000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXG000000000.  This version of the
            project (01) has the accession number NZ_JALCXG010000000, and
            consists of sequences JALCXG010000001-JALCXG010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689495.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:49:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,433
            CDSs (total)                      :: 2,376
            Genes (coding)                    :: 2,334
            CDSs (with protein)               :: 2,334
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 11 of 42
            Pseudo Genes (incomplete)         :: 34 of 42
            Pseudo Genes (internal stop)      :: 6 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535567
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnc"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXG010000001-JALCXG010000049
WGS_SCAFLD  NZ_JALCXG010000001-NZ_JALCXG010000049
//
LOCUS       NZ_PZAI01000000      2372764 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1445, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAI00000000
VERSION     NZ_PZAI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172920
            Assembly: GCF_003040135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2372764)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372764)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAI00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAI00000000.  This version of the
            project (01) has the accession number NZ_PZAI01000000, and consists
            of sequences PZAI01000001-PZAI01000096.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:56:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,430
            CDSs (total)                      :: 2,351
            Genes (coding)                    :: 2,299
            CDSs (with protein)               :: 2,299
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 8, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 12 of 52
            Pseudo Genes (incomplete)         :: 43 of 52
            Pseudo Genes (internal stop)      :: 4 of 52
            Pseudo Genes (multiple problems)  :: 6 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372764
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1445"
                     /isolation_source="Herd 418"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2008-06-11"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAI01000001-PZAI01000096
WGS_SCAFLD  NZ_PZAI01000001-NZ_PZAI01000096
//
LOCUS       NZ_JALCXE010000000   2527888 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrnb, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXE000000000
VERSION     NZ_JALCXE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962531
            Assembly: GCF_022689525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2527888)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2527888)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXE000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXE000000000.  This version of the
            project (01) has the accession number NZ_JALCXE010000000, and
            consists of sequences JALCXE010000001-JALCXE010000058.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689525.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:51:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,454
            CDSs (total)                      :: 2,401
            Genes (coding)                    :: 2,368
            CDSs (with protein)               :: 2,368
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 4 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 4 of 33
            Pseudo Genes (incomplete)         :: 27 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 3 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527888
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrnb"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXE010000001-JALCXE010000058
WGS_SCAFLD  NZ_JALCXE010000001-NZ_JALCXE010000058
//
LOCUS       NZ_PZAL01000000      2271218 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1381, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAL00000000
VERSION     NZ_PZAL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172915
            Assembly: GCF_003040155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2271218)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271218)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAL00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAL00000000.  This version of the
            project (01) has the accession number NZ_PZAL01000000, and consists
            of sequences PZAL01000001-PZAL01000111.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:02:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,289
            CDSs (total)                      :: 2,205
            Genes (coding)                    :: 2,152
            CDSs (with protein)               :: 2,152
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 9, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 9, 7 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 18 of 53
            Pseudo Genes (incomplete)         :: 35 of 53
            Pseudo Genes (internal stop)      :: 12 of 53
            Pseudo Genes (multiple problems)  :: 9 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271218
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1381"
                     /isolation_source="Herd 326"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="2007-06-01"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAL01000001-PZAL01000111
WGS_SCAFLD  NZ_PZAL01000001-NZ_PZAL01000111
//
LOCUS       NZ_JALGYR010000000   2619647 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NJ2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGYR000000000
VERSION     NZ_JALGYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27067999
            Assembly: GCF_022815255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2619647)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Pan-genomic analysis of Staphylococcus warneri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2619647)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2022) College of Veterinary Medicine, Nanjing
            Agricultural University, Xiao Ling Wei, Nan Jing, Jiang Su 210095,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGYR000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALGYR000000000.  This version of the
            project (01) has the accession number NZ_JALGYR010000000, and
            consists of sequences JALGYR010000001-JALGYR010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:16:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,647
            CDSs (total)                      :: 2,575
            Genes (coding)                    :: 2,516
            CDSs (with protein)               :: 2,516
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 10 of 59
            Pseudo Genes (incomplete)         :: 41 of 59
            Pseudo Genes (internal stop)      :: 10 of 59
            Pseudo Genes (multiple problems)  :: 2 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619647
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NJ2"
                     /isolation_source="Blood culture medium"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="China: Nan Jing"
                     /lat_lon="32.07 N 118.78 E"
                     /collection_date="2021-02-19"
                     /collected_by="Jiangsu CDC"
WGS         JALGYR010000001-JALGYR010000044
WGS_SCAFLD  NZ_JALGYR010000001-NZ_JALGYR010000044
//
LOCUS       NZ_PZCL01000000      2301246 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 107, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCL00000000
VERSION     NZ_PZCL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172872
            Assembly: GCF_003040455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2301246)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301246)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCL00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCL00000000.  This version of the
            project (01) has the accession number NZ_PZCL01000000, and consists
            of sequences PZCL01000001-PZCL01000048.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040455.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:59:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,304
            CDSs (total)                      :: 2,222
            Genes (coding)                    :: 2,173
            CDSs (with protein)               :: 2,173
            Genes (RNA)                       :: 82
            rRNAs                             :: 6, 11, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 10, 1 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 11 of 49
            Pseudo Genes (incomplete)         :: 37 of 49
            Pseudo Genes (internal stop)      :: 6 of 49
            Pseudo Genes (multiple problems)  :: 5 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301246
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 107"
                     /isolation_source="Herd 103"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-04-20"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCL01000001-PZCL01000048
WGS_SCAFLD  NZ_PZCL01000001-NZ_PZCL01000048
//
LOCUS       NZ_JALGYM010000000   2579267 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NJ7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGYM000000000
VERSION     NZ_JALGYM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27068004
            Assembly: GCF_022815345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2579267)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Pan-genomic analysis of Staphylococcus warneri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2579267)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2022) College of Veterinary Medicine, Nanjing
            Agricultural University, Xiao Ling Wei, Nan Jing, Jiang Su 210095,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGYM000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALGYM000000000.  This version of the
            project (01) has the accession number NZ_JALGYM010000000, and
            consists of sequences JALGYM010000001-JALGYM010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815345.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:24:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,570
            CDSs (total)                      :: 2,506
            Genes (coding)                    :: 2,455
            CDSs (with protein)               :: 2,455
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 11 of 51
            Pseudo Genes (incomplete)         :: 33 of 51
            Pseudo Genes (internal stop)      :: 10 of 51
            Pseudo Genes (multiple problems)  :: 3 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579267
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NJ7"
                     /isolation_source="Blood culture medium"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="China: Nan Jing"
                     /lat_lon="32.07 N 118.78 E"
                     /collection_date="2021-02-20"
                     /collected_by="Jiangsu CDC"
WGS         JALGYM010000001-JALGYM010000042
WGS_SCAFLD  NZ_JALGYM010000001-NZ_JALGYM010000042
//
LOCUS       NZ_PZAK01000000      2305964 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1405, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAK00000000
VERSION     NZ_PZAK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172918
            Assembly: GCF_003039435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2305964)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305964)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAK00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAK00000000.  This version of the
            project (01) has the accession number NZ_PZAK01000000, and consists
            of sequences PZAK01000001-PZAK01000245.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039435.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:56:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,357
            CDSs (total)                      :: 2,283
            Genes (coding)                    :: 2,229
            CDSs (with protein)               :: 2,229
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 8, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 14 of 54
            Pseudo Genes (incomplete)         :: 41 of 54
            Pseudo Genes (internal stop)      :: 3 of 54
            Pseudo Genes (multiple problems)  :: 4 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305964
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1405"
                     /isolation_source="Herd 226"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2008-08-27"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAK01000001-PZAK01000245
WGS_SCAFLD  NZ_PZAK01000001-NZ_PZAK01000245
//
LOCUS       NZ_JAPYKJ010000000   2512126 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain RIT-Gs-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPYKJ000000000
VERSION     NZ_JAPYKJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32250709
            Assembly: GCF_029623335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2512126)
  AUTHORS   Savka,M.A.
  TITLE     Isolation, whole genome sequencing, and annotation of five garlic
            sap associated bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2512126)
  AUTHORS   Savka,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2022) Thomas H. Gosnell School of Life Sciences,
            Rochester Institute of Technology, 85 Lomb Memorial Dr., Rochester,
            NY 14623, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPYKJ000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JAPYKJ000000000.  This version of the
            project (01) has the accession number NZ_JAPYKJ010000000, and
            consists of sequences JAPYKJ010000001-JAPYKJ010000053.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 140x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029623335.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:27:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,493
            CDSs (total)                      :: 2,423
            Genes (coding)                    :: 2,362
            CDSs (with protein)               :: 2,362
            Genes (RNA)                       :: 70
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 26 of 61
            Pseudo Genes (incomplete)         :: 29 of 61
            Pseudo Genes (internal stop)      :: 16 of 61
            Pseudo Genes (multiple problems)  :: 10 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512126
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="RIT-Gs-2"
                     /isolation_source="sap"
                     /host="Allium sativum var. ophioscorodon"
                     /db_xref="taxon:1292"
                     /geo_loc_name="USA: Rochester"
                     /collection_date="2019-06"
WGS         JAPYKJ010000001-JAPYKJ010000053
WGS_SCAFLD  NZ_JAPYKJ010000001-NZ_JAPYKJ010000053
//
LOCUS       NZ_PZCH01000000      2343622 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 129, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCH00000000
VERSION     NZ_PZCH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172876
            Assembly: GCF_003040435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2343622)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343622)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCH00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCH00000000.  This version of the
            project (01) has the accession number NZ_PZCH01000000, and consists
            of sequences PZCH01000001-PZCH01000040.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 48x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040435.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:00:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,365
            CDSs (total)                      :: 2,281
            Genes (coding)                    :: 2,227
            CDSs (with protein)               :: 2,227
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 11, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 10, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 16 of 54
            Pseudo Genes (incomplete)         :: 35 of 54
            Pseudo Genes (internal stop)      :: 10 of 54
            Pseudo Genes (multiple problems)  :: 7 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343622
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 129"
                     /isolation_source="Herd 102"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-04-03"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCH01000001-PZCH01000040
WGS_SCAFLD  NZ_PZCH01000001-NZ_PZCH01000040
//
LOCUS       NZ_JBBLTB010000000   2854133 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus simulans strain JONWP151, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBLTB000000000
VERSION     NZ_JBBLTB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39542710
            Assembly: GCF_037694245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus simulans
  ORGANISM  Staphylococcus simulans
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2854133)
  AUTHORS   Sonnert,N.D., Rosen,C.E., Ghazi,A.R., Franzosa,E.A.,
            Duncan-Lowey,B., Gonzalez-Hernandez,J.A., Huck,J.D., Yang,Y.,
            Dai,Y., Rice,T.A., Nguyen,M.T., Song,D., Cao,Y., Martin,A.L.,
            Bielecka,A.A., Fischer,S., Guan,C., Oh,J., Huttenhower,C.,
            Ring,A.M. and Palm,N.W.
  TITLE     A host-microbiota interactome reveals extensive transkingdom
            connectivity
  JOURNAL   Nature 628 (8006), 171-179 (2024)
   PUBMED   38509360
REFERENCE   2  (bases 1 to 2854133)
  AUTHORS   Sonnert,N.D., Yang,Y., Oh,J. and Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) Immunobiology, Yale University, 1 Gilbert
            St. Rm S540, New Haven, CT 06519, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBLTB000000000.1.
            The Staphylococcus simulans whole genome shotgun (WGS) project has
            the project accession NZ_JBBLTB000000000.  This version of the
            project (01) has the accession number NZ_JBBLTB010000000, and
            consists of sequences JBBLTB010000001-JBBLTB010000440.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037694245.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:59:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,075
            CDSs (total)                      :: 3,010
            Genes (coding)                    :: 2,824
            CDSs (with protein)               :: 2,824
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 186
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 11 of 187
            Pseudo Genes (incomplete)         :: 174 of 187
            Pseudo Genes (internal stop)      :: 12 of 187
            Pseudo Genes (multiple problems)  :: 10 of 187
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854133
                     /organism="Staphylococcus simulans"
                     /mol_type="genomic DNA"
                     /strain="JONWP151"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1286"
                     /geo_loc_name="USA: New Haven, CT"
                     /lat_lon="41.3083 N 72.9279 W"
                     /collection_date="2022-08"
WGS         JBBLTB010000001-JBBLTB010000440
WGS_SCAFLD  NZ_JBBLTB010000001-NZ_JBBLTB010000440
//
LOCUS       NZ_JBAKHG010000000   2607799 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain IR051, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBAKHG000000000
VERSION     NZ_JBAKHG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39941973
            Assembly: GCF_049065865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2607799)
  AUTHORS   Parween,S.
  TITLE     WGS of Beneficial Strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2607799)
  AUTHORS   Parween,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2024) CDA, King Abdullah University of Science
            and Technology, 4700 King Abdullah University of Science and
            Technology, Thuwal 23955, Saudi Arabia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAKHG000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JBAKHG000000000.  This version of the
            project (01) has the accession number NZ_JBAKHG010000000, and
            consists of sequences JBAKHG010000001-JBAKHG010000052.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 104x
            Sequencing Technology  :: Illumina HiSeq 3000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049065865.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:28:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,631
            CDSs (total)                      :: 2,554
            Genes (coding)                    :: 2,487
            CDSs (with protein)               :: 2,487
            Genes (RNA)                       :: 77
            rRNAs                             :: 5, 5, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 17 of 67
            Pseudo Genes (incomplete)         :: 38 of 67
            Pseudo Genes (internal stop)      :: 22 of 67
            Pseudo Genes (multiple problems)  :: 10 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607799
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="IR051"
                     /host="Indigofera argentea Burm.f."
                     /db_xref="taxon:1292"
                     /geo_loc_name="Saudi Arabia: Jizan"
                     /collection_date="2012-03-10"
WGS         JBAKHG010000001-JBAKHG010000052
WGS_SCAFLD  NZ_JBAKHG010000001-NZ_JBAKHG010000052
//
LOCUS       NZ_NBUL01000000      6776081 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUL00000000
VERSION     NZ_NBUL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980183
            Assembly: GCF_002865155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 6776081)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 6776081)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUL00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUL00000000.  This version of the project
            (01) has the accession number NZ_NBUL01000000, and consists of
            sequences NBUL01000001-NBUL01000309.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 22.2x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:08:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,768
            CDSs (total)                      :: 6,710
            Genes (coding)                    :: 6,021
            CDSs (with protein)               :: 6,021
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 689
            CDSs (without protein)            :: 689
            Pseudo Genes (ambiguous residues) :: 2 of 689
            Pseudo Genes (frameshifted)       :: 380 of 689
            Pseudo Genes (incomplete)         :: 398 of 689
            Pseudo Genes (internal stop)      :: 61 of 689
            Pseudo Genes (multiple problems)  :: 138 of 689
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6776081
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str7"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUL01000001-NBUL01000309
WGS_SCAFLD  NZ_NBUL01000001-NZ_NBUL01000309
//
LOCUS       NZ_PZAJ01000000      2276884 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1415, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAJ00000000
VERSION     NZ_PZAJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172919
            Assembly: GCF_003036345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2276884)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276884)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAJ00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAJ00000000.  This version of the
            project (01) has the accession number NZ_PZAJ01000000, and consists
            of sequences PZAJ01000001-PZAJ01000088.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036345.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:03:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,284
            CDSs (total)                      :: 2,203
            Genes (coding)                    :: 2,153
            CDSs (with protein)               :: 2,153
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 8, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 8, 6 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 21 of 50
            Pseudo Genes (incomplete)         :: 30 of 50
            Pseudo Genes (internal stop)      :: 11 of 50
            Pseudo Genes (multiple problems)  :: 9 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276884
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1415"
                     /isolation_source="Herd 415"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2008-06-12"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAJ01000001-PZAJ01000088
WGS_SCAFLD  NZ_PZAJ01000001-NZ_PZAJ01000088
//
LOCUS       NZ_NBUG01000000      7290419 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUG00000000
VERSION     NZ_NBUG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980198
            Assembly: GCF_002865035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 7290419)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 7290419)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUG00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUG00000000.  This version of the project
            (01) has the accession number NZ_NBUG01000000, and consists of
            sequences NBUG01000001-NBUG01000208.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 16.0x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865035.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:13:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,253
            CDSs (total)                      :: 7,197
            Genes (coding)                    :: 6,241
            CDSs (with protein)               :: 6,241
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 956
            CDSs (without protein)            :: 956
            Pseudo Genes (ambiguous residues) :: 3 of 956
            Pseudo Genes (frameshifted)       :: 664 of 956
            Pseudo Genes (incomplete)         :: 424 of 956
            Pseudo Genes (internal stop)      :: 87 of 956
            Pseudo Genes (multiple problems)  :: 200 of 956
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7290419
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str12"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUG01000001-NBUG01000208
WGS_SCAFLD  NZ_NBUG01000001-NZ_NBUG01000208
//
LOCUS       NZ_NBUP01000000      6778955 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUP00000000
VERSION     NZ_NBUP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980088
            Assembly: GCF_002865225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 6778955)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 6778955)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUP00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUP00000000.  This version of the project
            (01) has the accession number NZ_NBUP01000000, and consists of
            sequences NBUP01000001-NBUP01000228.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 23.1x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865225.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:13:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,699
            CDSs (total)                      :: 6,639
            Genes (coding)                    :: 6,090
            CDSs (with protein)               :: 6,090
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 549
            CDSs (without protein)            :: 549
            Pseudo Genes (ambiguous residues) :: 0 of 549
            Pseudo Genes (frameshifted)       :: 327 of 549
            Pseudo Genes (incomplete)         :: 309 of 549
            Pseudo Genes (internal stop)      :: 52 of 549
            Pseudo Genes (multiple problems)  :: 128 of 549
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6778955
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str3"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUP01000001-NBUP01000228
WGS_SCAFLD  NZ_NBUP01000001-NZ_NBUP01000228
//
LOCUS       NZ_PYZZ01000000      2269670 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 3611, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PYZZ00000000
VERSION     NZ_PYZZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172933
            Assembly: GCF_003036245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2269670)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269670)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PYZZ00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PYZZ00000000.  This version of the
            project (01) has the accession number NZ_PYZZ01000000, and consists
            of sequences PYZZ01000001-PYZZ01000060.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 51x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036245.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:12:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,286
            CDSs (total)                      :: 2,200
            Genes (coding)                    :: 2,147
            CDSs (with protein)               :: 2,147
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 9, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8, 4 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 20 of 53
            Pseudo Genes (incomplete)         :: 35 of 53
            Pseudo Genes (internal stop)      :: 11 of 53
            Pseudo Genes (multiple problems)  :: 10 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269670
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 3611"
                     /isolation_source="Herd 401"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2007-07-11"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PYZZ01000001-PYZZ01000060
WGS_SCAFLD  NZ_PYZZ01000001-NZ_PYZZ01000060
//
LOCUS       NZ_PYZS01000000      2370316 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 5079, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PYZS00000000
VERSION     NZ_PYZS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172941
            Assembly: GCF_003036105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2370316)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370316)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PYZS00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PYZS00000000.  This version of the
            project (01) has the accession number NZ_PYZS01000000, and consists
            of sequences PYZS01000001-PYZS01000086.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 48x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036105.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:12:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,400
            CDSs (total)                      :: 2,319
            Genes (coding)                    :: 2,266
            CDSs (with protein)               :: 2,266
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 11, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 10, 2 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 11 of 53
            Pseudo Genes (incomplete)         :: 43 of 53
            Pseudo Genes (internal stop)      :: 3 of 53
            Pseudo Genes (multiple problems)  :: 4 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370316
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 5079"
                     /isolation_source="Herd 308"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="2007-08-15"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PYZS01000001-PYZS01000086
WGS_SCAFLD  NZ_PYZS01000001-NZ_PYZS01000086
//
LOCUS       NZ_NBUD01000000      6728302 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str15, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUD00000000
VERSION     NZ_NBUD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980208
            Assembly: GCF_002865005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 6728302)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 6728302)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUD00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUD00000000.  This version of the project
            (01) has the accession number NZ_NBUD01000000, and consists of
            sequences NBUD01000001-NBUD01000136.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 16.0x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865005.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:17:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,529
            CDSs (total)                      :: 6,474
            Genes (coding)                    :: 5,823
            CDSs (with protein)               :: 5,823
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 651
            CDSs (without protein)            :: 651
            Pseudo Genes (ambiguous residues) :: 0 of 651
            Pseudo Genes (frameshifted)       :: 475 of 651
            Pseudo Genes (incomplete)         :: 257 of 651
            Pseudo Genes (internal stop)      :: 76 of 651
            Pseudo Genes (multiple problems)  :: 140 of 651
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6728302
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str15"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUD01000001-NBUD01000136
WGS_SCAFLD  NZ_NBUD01000001-NZ_NBUD01000136
//
LOCUS       NZ_NBUI01000000      7034760 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str10, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUI00000000
VERSION     NZ_NBUI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980190
            Assembly: GCF_002865105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 7034760)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 7034760)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUI00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUI00000000.  This version of the project
            (01) has the accession number NZ_NBUI01000000, and consists of
            sequences NBUI01000001-NBUI01000149.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 17.9x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865105.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:16:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,948
            CDSs (total)                      :: 6,893
            Genes (coding)                    :: 6,177
            CDSs (with protein)               :: 6,177
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 716
            CDSs (without protein)            :: 716
            Pseudo Genes (ambiguous residues) :: 0 of 716
            Pseudo Genes (frameshifted)       :: 495 of 716
            Pseudo Genes (incomplete)         :: 341 of 716
            Pseudo Genes (internal stop)      :: 87 of 716
            Pseudo Genes (multiple problems)  :: 183 of 716
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7034760
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str10"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUI01000001-NBUI01000149
WGS_SCAFLD  NZ_NBUI01000001-NZ_NBUI01000149
//
LOCUS       NZ_NBUQ01000000      7320172 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUQ00000000
VERSION     NZ_NBUQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980086
            Assembly: GCF_002865265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 7320172)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 7320172)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUQ00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUQ00000000.  This version of the project
            (01) has the accession number NZ_NBUQ01000000, and consists of
            sequences NBUQ01000001-NBUQ01000209.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 17.0x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865265.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:21:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,324
            CDSs (total)                      :: 7,268
            Genes (coding)                    :: 6,253
            CDSs (with protein)               :: 6,253
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 1,015
            CDSs (without protein)            :: 1,015
            Pseudo Genes (ambiguous residues) :: 0 of 1,015
            Pseudo Genes (frameshifted)       :: 719 of 1,015
            Pseudo Genes (incomplete)         :: 444 of 1,015
            Pseudo Genes (internal stop)      :: 101 of 1,015
            Pseudo Genes (multiple problems)  :: 224 of 1,015
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7320172
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str1"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
                     /collected_by="S. Porter"
WGS         NBUQ01000001-NBUQ01000209
WGS_SCAFLD  NZ_NBUQ01000001-NZ_NBUQ01000209
//
LOCUS       NZ_NBUM01000000      6680450 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUM00000000
VERSION     NZ_NBUM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980181
            Assembly: GCF_002865185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 6680450)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 6680450)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUM00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUM00000000.  This version of the project
            (01) has the accession number NZ_NBUM01000000, and consists of
            sequences NBUM01000001-NBUM01000144.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 14.5x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865185.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:23:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,498
            CDSs (total)                      :: 6,444
            Genes (coding)                    :: 5,719
            CDSs (with protein)               :: 5,719
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 725
            CDSs (without protein)            :: 725
            Pseudo Genes (ambiguous residues) :: 4 of 725
            Pseudo Genes (frameshifted)       :: 540 of 725
            Pseudo Genes (incomplete)         :: 267 of 725
            Pseudo Genes (internal stop)      :: 91 of 725
            Pseudo Genes (multiple problems)  :: 160 of 725
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6680450
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str6"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUM01000001-NBUM01000144
WGS_SCAFLD  NZ_NBUM01000001-NZ_NBUM01000144
//
LOCUS       NZ_QXRC01000000      2280142 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1376, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXRC00000000
VERSION     NZ_QXRC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172913
            Assembly: GCF_003578485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2280142)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2280142)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXRC00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_QXRC00000000.  This version of the
            project (01) has the accession number NZ_QXRC01000000, and consists
            of sequences QXRC01000001-QXRC01000044.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 139x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:25:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,288
            CDSs (total)                      :: 2,204
            Genes (coding)                    :: 2,154
            CDSs (with protein)               :: 2,154
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 6, 5 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 17 of 50
            Pseudo Genes (incomplete)         :: 34 of 50
            Pseudo Genes (internal stop)      :: 6 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2280142
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1376"
                     /isolation_source="Herd 225"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-04-28"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXRC01000001-QXRC01000044
WGS_SCAFLD  NZ_QXRC01000001-NZ_QXRC01000044
//
LOCUS       NZ_NBUF01000000      7093476 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUF00000000
VERSION     NZ_NBUF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980199
            Assembly: GCF_002865045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 7093476)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 7093476)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUF00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUF00000000.  This version of the project
            (01) has the accession number NZ_NBUF01000000, and consists of
            sequences NBUF01000001-NBUF01000206.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 16.1x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002865045.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:27:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,083
            CDSs (total)                      :: 7,027
            Genes (coding)                    :: 6,073
            CDSs (with protein)               :: 6,073
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 954
            CDSs (without protein)            :: 954
            Pseudo Genes (ambiguous residues) :: 3 of 954
            Pseudo Genes (frameshifted)       :: 680 of 954
            Pseudo Genes (incomplete)         :: 398 of 954
            Pseudo Genes (internal stop)      :: 91 of 954
            Pseudo Genes (multiple problems)  :: 195 of 954
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7093476
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str13"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUF01000001-NBUF01000206
WGS_SCAFLD  NZ_NBUF01000001-NZ_NBUF01000206
//
LOCUS       NZ_NBUC01000000      7322559 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium medicae strain Str16, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NBUC00000000
VERSION     NZ_NBUC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05980212
            Assembly: GCF_002864985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium medicae (Ensifer medicae)
  ORGANISM  Sinorhizobium medicae
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 7322559)
  AUTHORS   Porter,S.S., Faber-Hammond,J.J. and Friesen,M.L.
  TITLE     Co-invading symbiotic mutualists of Medicago polymorpha retain high
            ancestral diversity and contain diverse accessory genomes
  JOURNAL   FEMS Microbiol Ecol 94 (1) (2018)
   PUBMED   29228264
REFERENCE   2  (bases 1 to 7322559)
  AUTHORS   Porter,S., Friesen,M.L. and Faber-Hammond,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2017) Biology, Washington State University
            Vancouver, 14204 NE Salmon Creek Ave., Vancouver, WA 98686, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NBUC00000000.1.
            The Sinorhizobium medicae whole genome shotgun (WGS) project has
            the project accession NZ_NBUC00000000.  This version of the project
            (01) has the accession number NZ_NBUC01000000, and consists of
            sequences NBUC01000001-NBUC01000201.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: AllPaths v. May-18-2012 Linux x64 A5
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000017145.1
            Genome Coverage           :: 23.3x
            Sequencing Technology     :: Illumina Genome Analyzer IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002864985.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:48:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,253
            CDSs (total)                      :: 7,195
            Genes (coding)                    :: 6,516
            CDSs (with protein)               :: 6,516
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 679
            CDSs (without protein)            :: 679
            Pseudo Genes (ambiguous residues) :: 0 of 679
            Pseudo Genes (frameshifted)       :: 424 of 679
            Pseudo Genes (incomplete)         :: 390 of 679
            Pseudo Genes (internal stop)      :: 69 of 679
            Pseudo Genes (multiple problems)  :: 181 of 679
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7322559
                     /organism="Sinorhizobium medicae"
                     /mol_type="genomic DNA"
                     /strain="Str16"
                     /host="Medicago polymorpha"
                     /db_xref="taxon:110321"
                     /geo_loc_name="USA: California"
                     /lat_lon="38.871 N 122.419 W"
                     /collection_date="2009"
WGS         NBUC01000001-NBUC01000201
WGS_SCAFLD  NZ_NBUC01000001-NZ_NBUC01000201
//
LOCUS       NZ_JABVWZ010000000   2825540 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus argenteus strain CFSA17SA018, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABVWZ000000000
VERSION     NZ_JABVWZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15184478
            Assembly: GCF_021432405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus argenteus
  ORGANISM  Staphylococcus argenteus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2825540)
  AUTHORS   Wang,W., Baker,M., Hu,Y., Xu,J., Yang,D., Maciel-Guerra,A., Xue,N.,
            Li,H., Yan,S., Li,M., Bai,Y., Dong,Y., Peng,Z., Ma,J., Li,F. and
            Dottorini,T.
  TITLE     Whole-Genome Sequencing and Machine Learning Analysis of
            Staphylococcus aureus from Multiple Heterogeneous Sources in China
            Reveals Common Genetic Traits of Antimicrobial Resistance
  JOURNAL   mSystems 6 (3), e0118520 (2021)
   PUBMED   34100643
REFERENCE   2  (bases 1 to 2825540)
  AUTHORS   Wang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2020) Microbiology Laboratory, China National
            Center for Food Safety Risk Assessment, No. 7 Panjiayuannanli Road,
            Beijing 100021, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABVWZ000000000.1.
            The Staphylococcus argenteus whole genome shotgun (WGS) project has
            the project accession NZ_JABVWZ000000000.  This version of the
            project (01) has the accession number NZ_JABVWZ010000000, and
            consists of sequences JABVWZ010000001-JABVWZ010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021432405.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:10:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,766
            CDSs (total)                      :: 2,705
            Genes (coding)                    :: 2,615
            CDSs (with protein)               :: 2,615
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 41 of 90
            Pseudo Genes (incomplete)         :: 44 of 90
            Pseudo Genes (internal stop)      :: 22 of 90
            Pseudo Genes (multiple problems)  :: 14 of 90
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2825540
                     /organism="Staphylococcus argenteus"
                     /mol_type="genomic DNA"
                     /strain="CFSA17SA018"
                     /isolation_source="food"
                     /db_xref="taxon:985002"
                     /collection_date="2017"
                     /collected_by="CFSA"
WGS         JABVWZ010000001-JABVWZ010000014
WGS_SCAFLD  NZ_JABVWZ010000001-NZ_JABVWZ010000014
//
LOCUS       NZ_JABVXA010000000   2782812 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus argenteus strain CFSA15SA062, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABVXA000000000
VERSION     NZ_JABVXA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15184474
            Assembly: GCF_021432485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus argenteus
  ORGANISM  Staphylococcus argenteus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2782812)
  AUTHORS   Wang,W., Baker,M., Hu,Y., Xu,J., Yang,D., Maciel-Guerra,A., Xue,N.,
            Li,H., Yan,S., Li,M., Bai,Y., Dong,Y., Peng,Z., Ma,J., Li,F. and
            Dottorini,T.
  TITLE     Whole-Genome Sequencing and Machine Learning Analysis of
            Staphylococcus aureus from Multiple Heterogeneous Sources in China
            Reveals Common Genetic Traits of Antimicrobial Resistance
  JOURNAL   mSystems 6 (3), e0118520 (2021)
   PUBMED   34100643
REFERENCE   2  (bases 1 to 2782812)
  AUTHORS   Wang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2020) Microbiology Laboratory, China National
            Center for Food Safety Risk Assessment, No. 7 Panjiayuannanli Road,
            Beijing 100021, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABVXA000000000.1.
            The Staphylococcus argenteus whole genome shotgun (WGS) project has
            the project accession NZ_JABVXA000000000.  This version of the
            project (01) has the accession number NZ_JABVXA010000000, and
            consists of sequences JABVXA010000001-JABVXA010000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021432485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:15:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,702
            CDSs (total)                      :: 2,647
            Genes (coding)                    :: 2,557
            CDSs (with protein)               :: 2,557
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 45 of 90
            Pseudo Genes (incomplete)         :: 43 of 90
            Pseudo Genes (internal stop)      :: 23 of 90
            Pseudo Genes (multiple problems)  :: 15 of 90
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782812
                     /organism="Staphylococcus argenteus"
                     /mol_type="genomic DNA"
                     /strain="CFSA15SA062"
                     /isolation_source="food"
                     /db_xref="taxon:985002"
                     /collection_date="2015"
                     /collected_by="CFSA"
WGS         JABVXA010000001-JABVXA010000016
WGS_SCAFLD  NZ_JABVXA010000001-NZ_JABVXA010000016
//
LOCUS       NZ_JAKVGG010000000   2457289 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 106P3NS1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVGG000000000
VERSION     NZ_JAKVGG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185708
            Assembly: GCF_022487625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2457289)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2457289)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVGG000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVGG000000000.  This version of the
            project (01) has the accession number NZ_JAKVGG010000000, and
            consists of sequences JAKVGG010000001-JAKVGG010000085.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022487625.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:24:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,441
            CDSs (total)                      :: 2,391
            Genes (coding)                    :: 2,336
            CDSs (with protein)               :: 2,336
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 18 of 55
            Pseudo Genes (incomplete)         :: 28 of 55
            Pseudo Genes (internal stop)      :: 13 of 55
            Pseudo Genes (multiple problems)  :: 4 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457289
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="106P3NS1"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVGG010000001-JAKVGG010000085
WGS_SCAFLD  NZ_JAKVGG010000001-NZ_JAKVGG010000085
//
LOCUS       NZ_JAKVDW010000000   2450387 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 114P3FS3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVDW000000000
VERSION     NZ_JAKVDW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185770
            Assembly: GCF_022485535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2450387)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2450387)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVDW000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVDW000000000.  This version of the
            project (01) has the accession number NZ_JAKVDW010000000, and
            consists of sequences JAKVDW010000001-JAKVDW010000076.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485535.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:26:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,450
            CDSs (total)                      :: 2,402
            Genes (coding)                    :: 2,346
            CDSs (with protein)               :: 2,346
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 17 of 56
            Pseudo Genes (incomplete)         :: 31 of 56
            Pseudo Genes (internal stop)      :: 12 of 56
            Pseudo Genes (multiple problems)  :: 4 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450387
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="114P3FS3"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVDW010000001-JAKVDW010000076
WGS_SCAFLD  NZ_JAKVDW010000001-NZ_JAKVDW010000076
//
LOCUS       NZ_JAKVDV010000000   2441565 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 114P3NS1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVDV000000000
VERSION     NZ_JAKVDV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185771
            Assembly: GCF_022485705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2441565)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2441565)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVDV000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVDV000000000.  This version of the
            project (01) has the accession number NZ_JAKVDV010000000, and
            consists of sequences JAKVDV010000001-JAKVDV010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485705.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:27:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,447
            CDSs (total)                      :: 2,399
            Genes (coding)                    :: 2,344
            CDSs (with protein)               :: 2,344
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 17 of 55
            Pseudo Genes (incomplete)         :: 29 of 55
            Pseudo Genes (internal stop)      :: 12 of 55
            Pseudo Genes (multiple problems)  :: 3 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441565
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="114P3NS1"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVDV010000001-JAKVDV010000072
WGS_SCAFLD  NZ_JAKVDV010000001-NZ_JAKVDV010000072
//
LOCUS       NZ_JAKVGI010000000   2490921 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 106P1NS1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVGI000000000
VERSION     NZ_JAKVGI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185706
            Assembly: GCF_022486325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2490921)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2490921)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVGI000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVGI000000000.  This version of the
            project (01) has the accession number NZ_JAKVGI010000000, and
            consists of sequences JAKVGI010000001-JAKVGI010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022486325.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:25:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,466
            CDSs (total)                      :: 2,416
            Genes (coding)                    :: 2,361
            CDSs (with protein)               :: 2,361
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 17 of 55
            Pseudo Genes (incomplete)         :: 28 of 55
            Pseudo Genes (internal stop)      :: 13 of 55
            Pseudo Genes (multiple problems)  :: 3 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2490921
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="106P1NS1"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVGI010000001-JAKVGI010000088
WGS_SCAFLD  NZ_JAKVGI010000001-NZ_JAKVGI010000088
//
LOCUS       NZ_JAKVGR010000000   2443137 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 030P4FS4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVGR000000000
VERSION     NZ_JAKVGR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185697
            Assembly: GCF_022487635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2443137)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2443137)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVGR000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVGR000000000.  This version of the
            project (01) has the accession number NZ_JAKVGR010000000, and
            consists of sequences JAKVGR010000001-JAKVGR010000069.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022487635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:32:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,447
            CDSs (total)                      :: 2,388
            Genes (coding)                    :: 2,332
            CDSs (with protein)               :: 2,332
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 4 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 21 of 56
            Pseudo Genes (incomplete)         :: 34 of 56
            Pseudo Genes (internal stop)      :: 8 of 56
            Pseudo Genes (multiple problems)  :: 7 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443137
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="030P4FS4"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVGR010000001-JAKVGR010000069
WGS_SCAFLD  NZ_JAKVGR010000001-NZ_JAKVGR010000069
//
LOCUS       NZ_JAKVGP010000000   2474688 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 031P2FS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVGP000000000
VERSION     NZ_JAKVGP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185699
            Assembly: GCF_022487895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2474688)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2474688)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVGP000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVGP000000000.  This version of the
            project (01) has the accession number NZ_JAKVGP010000000, and
            consists of sequences JAKVGP010000001-JAKVGP010000085.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022487895.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:33:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,488
            CDSs (total)                      :: 2,432
            Genes (coding)                    :: 2,374
            CDSs (with protein)               :: 2,374
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 19 of 58
            Pseudo Genes (incomplete)         :: 31 of 58
            Pseudo Genes (internal stop)      :: 10 of 58
            Pseudo Genes (multiple problems)  :: 2 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474688
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="031P2FS2"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVGP010000001-JAKVGP010000085
WGS_SCAFLD  NZ_JAKVGP010000001-NZ_JAKVGP010000085
//
LOCUS       NZ_JAKVEM010000000   2430307 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain H8FS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVEM000000000
VERSION     NZ_JAKVEM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185754
            Assembly: GCF_022485425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2430307)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2430307)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVEM000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVEM000000000.  This version of the
            project (01) has the accession number NZ_JAKVEM010000000, and
            consists of sequences JAKVEM010000001-JAKVEM010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485425.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:33:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,430
            CDSs (total)                      :: 2,372
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 16 of 56
            Pseudo Genes (incomplete)         :: 34 of 56
            Pseudo Genes (internal stop)      :: 13 of 56
            Pseudo Genes (multiple problems)  :: 7 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430307
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="H8FS2"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVEM010000001-JAKVEM010000060
WGS_SCAFLD  NZ_JAKVEM010000001-NZ_JAKVEM010000060
//
LOCUS       NZ_JALCWG010000000   2268944 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain acrlh, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCWG000000000
VERSION     NZ_JALCWG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962485
            Assembly: GCF_022690005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2268944)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2268944)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCWG000000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_JALCWG000000000.  This version of the
            project (01) has the accession number NZ_JALCWG010000000, and
            consists of sequences JALCWG010000001-JALCWG010000023.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 86x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022690005.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:42:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,303
            CDSs (total)                      :: 2,248
            Genes (coding)                    :: 2,194
            CDSs (with protein)               :: 2,194
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 20 of 54
            Pseudo Genes (incomplete)         :: 37 of 54
            Pseudo Genes (internal stop)      :: 15 of 54
            Pseudo Genes (multiple problems)  :: 13 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2268944
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="acrlh"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCWG010000001-JALCWG010000023
WGS_SCAFLD  NZ_JALCWG010000001-NZ_JALCWG010000023
//
LOCUS       NZ_JALCVN010000000   2286950 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain acrmt, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCVN000000000
VERSION     NZ_JALCVN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962523
            Assembly: GCF_022690375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2286950)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2286950)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCVN000000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_JALCVN000000000.  This version of the
            project (01) has the accession number NZ_JALCVN010000000, and
            consists of sequences JALCVN010000001-JALCVN010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022690375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:47:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,341
            CDSs (total)                      :: 2,296
            Genes (coding)                    :: 2,244
            CDSs (with protein)               :: 2,244
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 20 of 52
            Pseudo Genes (incomplete)         :: 35 of 52
            Pseudo Genes (internal stop)      :: 16 of 52
            Pseudo Genes (multiple problems)  :: 14 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286950
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="acrmt"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCVN010000001-JALCVN010000026
WGS_SCAFLD  NZ_JALCVN010000001-NZ_JALCVN010000026
//
LOCUS       NZ_JALCVR010000000   2268824 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain acrmv, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCVR000000000
VERSION     NZ_JALCVR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962525
            Assembly: GCF_022690295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2268824)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2268824)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCVR000000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_JALCVR000000000.  This version of the
            project (01) has the accession number NZ_JALCVR010000000, and
            consists of sequences JALCVR010000001-JALCVR010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 85x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022690295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:54:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,313
            CDSs (total)                      :: 2,266
            Genes (coding)                    :: 2,213
            CDSs (with protein)               :: 2,213
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 16 of 53
            Pseudo Genes (incomplete)         :: 41 of 53
            Pseudo Genes (internal stop)      :: 10 of 53
            Pseudo Genes (multiple problems)  :: 12 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2268824
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="acrmv"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCVR010000001-JALCVR010000027
WGS_SCAFLD  NZ_JALCVR010000001-NZ_JALCVR010000027
//
LOCUS       NZ_JALGOY010000000   2437425 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain PK-01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGOY000000000
VERSION     NZ_JALGOY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27019307
            Assembly: GCF_022809935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2437425)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Dsani,E., Amuasi,G.R. and Owusu,F.A.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2437425)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Dsani,E., Amuasi,G.R. and Owusu,F.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGOY000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JALGOY000000000.  This version of the
            project (01) has the accession number NZ_JALGOY010000000, and
            consists of sequences JALGOY010000001-JALGOY010000081.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 79x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022809935.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:57:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,481
            CDSs (total)                      :: 2,416
            Genes (coding)                    :: 2,360
            CDSs (with protein)               :: 2,360
            Genes (RNA)                       :: 65
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 17 of 56
            Pseudo Genes (incomplete)         :: 38 of 56
            Pseudo Genes (internal stop)      :: 11 of 56
            Pseudo Genes (multiple problems)  :: 10 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437425
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="PK-01"
                     /isolation_source="nasal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:1283"
                     /geo_loc_name="Ghana: Northen region"
                     /collection_date="2021"
WGS         JALGOY010000001-JALGOY010000081
WGS_SCAFLD  NZ_JALGOY010000001-NZ_JALGOY010000081
//
LOCUS       NZ_JAMBPY010000000   2964549 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus equorum strain TMW 2.2499, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMBPY000000000
VERSION     NZ_JAMBPY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28092421
            Assembly: GCF_029531885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus equorum
  ORGANISM  Staphylococcus equorum
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2964549)
  AUTHORS   Luelf,R.H.
  TITLE     Comparative genomics of Staphylococcus equorum isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2964549)
  AUTHORS   Luelf,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2022) Mikrobiologie, Technische Universitaet
            Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMBPY000000000.1.
            The Staphylococcus equorum whole genome shotgun (WGS) project has
            the project accession NZ_JAMBPY000000000.  This version of the
            project (01) has the accession number NZ_JAMBPY010000000, and
            consists of sequences JAMBPY010000001-JAMBPY010000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2022
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 518x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029531885.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:04:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,985
            CDSs (total)                      :: 2,922
            Genes (coding)                    :: 2,869
            CDSs (with protein)               :: 2,869
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 23 of 53
            Pseudo Genes (incomplete)         :: 28 of 53
            Pseudo Genes (internal stop)      :: 11 of 53
            Pseudo Genes (multiple problems)  :: 9 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2964549
                     /organism="Staphylococcus equorum"
                     /mol_type="genomic DNA"
                     /strain="TMW 2.2499"
                     /host="Lupine moromi"
                     /db_xref="taxon:246432"
                     /geo_loc_name="Germany: Bavaria"
                     /collection_date="2021-04"
WGS         JAMBPY010000001-JAMBPY010000037
WGS_SCAFLD  NZ_JAMBPY010000001-NZ_JAMBPY010000037
//
LOCUS       NZ_JAMBPZ010000000   2945526 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus equorum strain TMW 2.2498, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMBPZ000000000
VERSION     NZ_JAMBPZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28092420
            Assembly: GCF_029531945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus equorum
  ORGANISM  Staphylococcus equorum
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2945526)
  AUTHORS   Luelf,R.H.
  TITLE     Comparative genomics of Staphylococcus equorum isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2945526)
  AUTHORS   Luelf,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2022) Mikrobiologie, Technische Universitaet
            Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMBPZ000000000.1.
            The Staphylococcus equorum whole genome shotgun (WGS) project has
            the project accession NZ_JAMBPZ000000000.  This version of the
            project (01) has the accession number NZ_JAMBPZ010000000, and
            consists of sequences JAMBPZ010000001-JAMBPZ010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2022
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 401x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029531945.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:07:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,966
            CDSs (total)                      :: 2,902
            Genes (coding)                    :: 2,856
            CDSs (with protein)               :: 2,856
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 20 of 46
            Pseudo Genes (incomplete)         :: 22 of 46
            Pseudo Genes (internal stop)      :: 10 of 46
            Pseudo Genes (multiple problems)  :: 6 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945526
                     /organism="Staphylococcus equorum"
                     /mol_type="genomic DNA"
                     /strain="TMW 2.2498"
                     /host="Lupine moromi"
                     /db_xref="taxon:246432"
                     /geo_loc_name="Germany: Bavaria"
                     /collection_date="2021-04"
WGS         JAMBPZ010000001-JAMBPZ010000033
WGS_SCAFLD  NZ_JAMBPZ010000001-NZ_JAMBPZ010000033
//
LOCUS       NZ_JAMBQA010000000   2998283 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus equorum strain TMW 2.2497, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMBQA000000000
VERSION     NZ_JAMBQA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28092419
            Assembly: GCF_029531905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus equorum
  ORGANISM  Staphylococcus equorum
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2998283)
  AUTHORS   Luelf,R.H.
  TITLE     Comparative genomics of Staphylococcus equorum isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2998283)
  AUTHORS   Luelf,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2022) Mikrobiologie, Technische Universitaet
            Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMBQA000000000.1.
            The Staphylococcus equorum whole genome shotgun (WGS) project has
            the project accession NZ_JAMBQA000000000.  This version of the
            project (01) has the accession number NZ_JAMBQA010000000, and
            consists of sequences JAMBQA010000001-JAMBQA010000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: MAY-2022
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 676x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029531905.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:10:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,027
            CDSs (total)                      :: 2,963
            Genes (coding)                    :: 2,908
            CDSs (with protein)               :: 2,908
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 22 of 55
            Pseudo Genes (incomplete)         :: 31 of 55
            Pseudo Genes (internal stop)      :: 11 of 55
            Pseudo Genes (multiple problems)  :: 9 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998283
                     /organism="Staphylococcus equorum"
                     /mol_type="genomic DNA"
                     /strain="TMW 2.2497"
                     /host="Lupine moromi"
                     /db_xref="taxon:246432"
                     /geo_loc_name="Germany: Bavaria"
                     /collection_date="2021-04"
WGS         JAMBQA010000001-JAMBQA010000039
WGS_SCAFLD  NZ_JAMBQA010000001-NZ_JAMBQA010000039
//
LOCUS       NZ_JAJJBN010000000   7171952 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinorhizobium meliloti strain AK83, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAJJBN000000000
VERSION     NZ_JAJJBN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16976744
            Assembly: GCF_028895065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinorhizobium meliloti (Rhizobium meliloti)
  ORGANISM  Sinorhizobium meliloti
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group;
            Sinorhizobium.
REFERENCE   1  (bases 1 to 7171952)
  AUTHORS   Fagorzi,C.
  TITLE     S. meliloti strains sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7171952)
  AUTHORS   Fagorzi,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2021) Biology, University of Florence, via
            Madonna del Piano, 6, Sesto Fiorentino, Florence 50019, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJJBN000000000.1.
            The Sinorhizobium meliloti whole genome shotgun (WGS) project has
            the project accession NZ_JAJJBN000000000.  This version of the
            project (01) has the accession number NZ_JAJJBN010000000, and
            consists of sequences JAJJBN010000001-JAJJBN010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Microbial Assembly SMRT Link v.
                                      8.0.0.80529
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 175x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895065.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:20:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,039
            CDSs (total)                      :: 6,970
            Genes (coding)                    :: 6,591
            CDSs (with protein)               :: 6,591
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 379
            CDSs (without protein)            :: 379
            Pseudo Genes (ambiguous residues) :: 0 of 379
            Pseudo Genes (frameshifted)       :: 240 of 379
            Pseudo Genes (incomplete)         :: 224 of 379
            Pseudo Genes (internal stop)      :: 42 of 379
            Pseudo Genes (multiple problems)  :: 114 of 379
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7171952
                     /organism="Sinorhizobium meliloti"
                     /mol_type="genomic DNA"
                     /strain="AK83"
                     /isolation_source="nodules"
                     /host="Medicago sp."
                     /db_xref="taxon:382"
                     /geo_loc_name="Kazakhstan"
                     /collection_date="2013"
WGS         JAJJBN010000001-JAJJBN010000007
WGS_SCAFLD  NZ_JAJJBN010000001-NZ_JAJJBN010000007
//
LOCUS       NZ_CEWBYV010000000   2108201 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Slackia sp. isolate DRR171810_bin_5893, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CEWBYV000000000
VERSION     NZ_CEWBYV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090908
            Sequence Read Archive: DRR171810
            Assembly: GCF_982428745.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Slackia sp. (human gut metagenome)
  ORGANISM  Slackia sp.
            Bacteria; Bacillati; Actinomycetota; Coriobacteriia;
            Eggerthellales; Eggerthellaceae; Slackia.
REFERENCE   1  (bases 1 to 2108201)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWBYV000000000.1.
            The Slackia sp. whole genome shotgun (WGS) project has the project
            accession NZ_CEWBYV000000000.  This version of the project (01) has
            the accession number NZ_CEWBYV010000000, and consists of sequences
            CEWBYV010000001-CEWBYV010000071.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171810.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982428745.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:08:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,768
            CDSs (total)                      :: 1,715
            Genes (coding)                    :: 1,704
            CDSs (with protein)               :: 1,704
            Genes (RNA)                       :: 53
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 1 of 11
            Pseudo Genes (incomplete)         :: 9 of 11
            Pseudo Genes (internal stop)      :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108201
                     /organism="Slackia sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171810_bin_5893"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:2049041"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWBYV010000001-CEWBYV010000071
WGS_SCAFLD  NZ_CEWBYV010000001-NZ_CEWBYV010000071
//
LOCUS       NZ_CEVZVM010000000   1796636 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Solobacterium moorei isolate DRR171670_bin_1248, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZVM000000000
VERSION     NZ_CEVZVM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089828
            Sequence Read Archive: DRR171670
            Assembly: GCF_982414875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Solobacterium moorei (human gut metagenome)
  ORGANISM  Solobacterium moorei
            Bacteria; Bacillati; Bacillota; Erysipelotrichia;
            Erysipelotrichales; Erysipelotrichaceae; Solobacterium.
REFERENCE   1  (bases 1 to 1796636)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZVM000000000.1.
            The Solobacterium moorei whole genome shotgun (WGS) project has the
            project accession NZ_CEVZVM000000000.  This version of the project
            (01) has the accession number NZ_CEVZVM010000000, and consists of
            sequences CEVZVM010000001-CEVZVM010000037.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171670.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982414875.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:57:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,767
            CDSs (total)                      :: 1,723
            Genes (coding)                    :: 1,712
            CDSs (with protein)               :: 1,712
            Genes (RNA)                       :: 44
            tRNAs                             :: 41
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 2 of 11
            Pseudo Genes (incomplete)         :: 4 of 11
            Pseudo Genes (internal stop)      :: 6 of 11
            Pseudo Genes (multiple problems)  :: 1 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796636
                     /organism="Solobacterium moorei"
                     /mol_type="genomic DNA"
                     /isolate="DRR171670_bin_1248"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:102148"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZVM010000001-CEVZVM010000037
WGS_SCAFLD  NZ_CEVZVM010000001-NZ_CEVZVM010000037
//
LOCUS       NZ_JBRRFW010000000   2937342 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus aureus strain CHM24, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRFW000000000
VERSION     NZ_JBRRFW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50890928
            Assembly: GCF_056754725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2937342)
  AUTHORS   Melaga,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2025) Microbiology, Carle Health Methodist
            Hospital, 221 NE Glen Oak Ave, Peoria, IL 61636, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRFW000000000.1.
            The Staphylococcus aureus whole genome shotgun (WGS) project has
            the project accession NZ_JBRRFW000000000.  This version of the
            project (01) has the accession number NZ_JBRRFW010000000, and
            consists of sequences JBRRFW010000001-JBRRFW010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Carle Health Methodist, 221
            NE Glen Oak Ave, Peoria, IL 61636.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: Flye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1250.0x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754725.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:22:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,961
            CDSs (total)                      :: 2,882
            Genes (coding)                    :: 2,775
            CDSs (with protein)               :: 2,775
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 57 of 107
            Pseudo Genes (incomplete)         :: 49 of 107
            Pseudo Genes (internal stop)      :: 17 of 107
            Pseudo Genes (multiple problems)  :: 15 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2937342
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="CHM24"
                     /isolation_source="nasal"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /geo_loc_name="USA"
                     /lat_lon="40.6927 N 89.5928 W"
                     /collection_date="2023"
                     /collected_by="Carle Health Methodist"
WGS         JBRRFW010000001-JBRRFW010000002
WGS_SCAFLD  NZ_JBRRFW010000001-NZ_JBRRFW010000002
//
LOCUS       NZ_JALGYQ010000000   2571928 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NJ3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGYQ000000000
VERSION     NZ_JALGYQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27068000
            Assembly: GCF_022815445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2571928)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Pan-genomic analysis of Staphylococcus warneri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2571928)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2022) College of Veterinary Medicine, Nanjing
            Agricultural University, Xiao Ling Wei, Nan Jing, Jiang Su 210095,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGYQ000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALGYQ000000000.  This version of the
            project (01) has the accession number NZ_JALGYQ010000000, and
            consists of sequences JALGYQ010000001-JALGYQ010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815445.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:20:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,569
            CDSs (total)                      :: 2,499
            Genes (coding)                    :: 2,451
            CDSs (with protein)               :: 2,451
            Genes (RNA)                       :: 70
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 10 of 48
            Pseudo Genes (incomplete)         :: 30 of 48
            Pseudo Genes (internal stop)      :: 10 of 48
            Pseudo Genes (multiple problems)  :: 2 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571928
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NJ3"
                     /isolation_source="Blood culture medium"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="China: Nan Jing"
                     /lat_lon="32.07 N 118.78 E"
                     /collection_date="2021-02-20"
                     /collected_by="Jiangsu CDC"
WGS         JALGYQ010000001-JALGYQ010000040
WGS_SCAFLD  NZ_JALGYQ010000001-NZ_JALGYQ010000040
//
LOCUS       NZ_JALGYL010000000   2618981 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NJ8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGYL000000000
VERSION     NZ_JALGYL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27068005
            Assembly: GCF_022815425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2618981)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Pan-genomic analysis of Staphylococcus warneri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2618981)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2022) College of Veterinary Medicine, Nanjing
            Agricultural University, Xiao Ling Wei, Nan Jing, Jiang Su 210095,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGYL000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALGYL000000000.  This version of the
            project (01) has the accession number NZ_JALGYL010000000, and
            consists of sequences JALGYL010000001-JALGYL010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815425.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:18:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,647
            CDSs (total)                      :: 2,580
            Genes (coding)                    :: 2,523
            CDSs (with protein)               :: 2,523
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 10 of 57
            Pseudo Genes (incomplete)         :: 40 of 57
            Pseudo Genes (internal stop)      :: 9 of 57
            Pseudo Genes (multiple problems)  :: 2 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618981
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NJ8"
                     /isolation_source="Blood culture medium"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="China: Nan Jing"
                     /lat_lon="32.07 N 118.78 E"
                     /collection_date="2021-02-21"
                     /collected_by="Jiangsu CDC"
WGS         JALGYL010000001-JALGYL010000046
WGS_SCAFLD  NZ_JALGYL010000001-NZ_JALGYL010000046
//
LOCUS       NZ_JALGYN010000000   2552797 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NJ6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGYN000000000
VERSION     NZ_JALGYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27068003
            Assembly: GCF_022815405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2552797)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Pan-genomic analysis of Staphylococcus warneri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2552797)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2022) College of Veterinary Medicine, Nanjing
            Agricultural University, Xiao Ling Wei, Nan Jing, Jiang Su 210095,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGYN000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALGYN000000000.  This version of the
            project (01) has the accession number NZ_JALGYN010000000, and
            consists of sequences JALGYN010000001-JALGYN010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815405.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:17:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,537
            CDSs (total)                      :: 2,469
            Genes (coding)                    :: 2,418
            CDSs (with protein)               :: 2,418
            Genes (RNA)                       :: 68
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 11 of 51
            Pseudo Genes (incomplete)         :: 33 of 51
            Pseudo Genes (internal stop)      :: 10 of 51
            Pseudo Genes (multiple problems)  :: 3 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552797
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NJ6"
                     /isolation_source="Blood culture medium"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="China: Nan Jing"
                     /lat_lon="32.07 N 118.78 E"
                     /collection_date="2021-02-20"
                     /collected_by="Jiangsu CDC"
WGS         JALGYN010000001-JALGYN010000042
WGS_SCAFLD  NZ_JALGYN010000001-NZ_JALGYN010000042
//
LOCUS       NZ_JALGYP010000000   2570149 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NJ4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGYP000000000
VERSION     NZ_JALGYP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27068001
            Assembly: GCF_022815375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2570149)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Pan-genomic analysis of Staphylococcus warneri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2570149)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2022) College of Veterinary Medicine, Nanjing
            Agricultural University, Xiao Ling Wei, Nan Jing, Jiang Su 210095,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGYP000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALGYP000000000.  This version of the
            project (01) has the accession number NZ_JALGYP010000000, and
            consists of sequences JALGYP010000001-JALGYP010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:27:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,533
            CDSs (total)                      :: 2,492
            Genes (coding)                    :: 2,449
            CDSs (with protein)               :: 2,449
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 9 of 43
            Pseudo Genes (incomplete)         :: 26 of 43
            Pseudo Genes (internal stop)      :: 10 of 43
            Pseudo Genes (multiple problems)  :: 2 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570149
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NJ4"
                     /isolation_source="Blood culture medium"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="China: Nan Jing"
                     /lat_lon="32.07 N 118.78 E"
                     /collection_date="2021-02-20"
                     /collected_by="Jiangsu CDC"
WGS         JALGYP010000001-JALGYP010000049
WGS_SCAFLD  NZ_JALGYP010000001-NZ_JALGYP010000049
//
LOCUS       NZ_JALGYO010000000   2573752 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain NJ5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGYO000000000
VERSION     NZ_JALGYO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27068002
            Assembly: GCF_022815485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2573752)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Pan-genomic analysis of Staphylococcus warneri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2573752)
  AUTHORS   Zhang,X., Zhou,Y., Zhang,W. and Tan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2022) College of Veterinary Medicine, Nanjing
            Agricultural University, Xiao Ling Wei, Nan Jing, Jiang Su 210095,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGYO000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALGYO000000000.  This version of the
            project (01) has the accession number NZ_JALGYO010000000, and
            consists of sequences JALGYO010000001-JALGYO010000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815485.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:24:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,504
            Genes (coding)                    :: 2,449
            CDSs (with protein)               :: 2,449
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 11 of 55
            Pseudo Genes (incomplete)         :: 37 of 55
            Pseudo Genes (internal stop)      :: 10 of 55
            Pseudo Genes (multiple problems)  :: 3 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573752
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="NJ5"
                     /isolation_source="Blood culture medium"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="China: Nan Jing"
                     /lat_lon="32.07 N 118.78 E"
                     /collection_date="2021-02-20"
                     /collected_by="Jiangsu CDC"
WGS         JALGYO010000001-JALGYO010000043
WGS_SCAFLD  NZ_JALGYO010000001-NZ_JALGYO010000043
//
LOCUS       NZ_JBMREZ010000000   4711981 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas maltophilia strain CASM51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMREZ000000000
VERSION     NZ_JBMREZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39201046
            Assembly: GCF_049385605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas maltophilia
  ORGANISM  Stenotrophomonas maltophilia
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 4711981)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Genotypic characterization of Stenotrophomonas maltophilia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4711981)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-DEC-2023) Department of naturel sciences, Lebanese
            American university, Microbial Pathogenomics Lab, Blat, Byblos 36,
            Lebanon
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMREZ000000000.1.
            The Stenotrophomonas maltophilia whole genome shotgun (WGS) project
            has the project accession NZ_JBMREZ000000000.  This version of the
            project (01) has the accession number NZ_JBMREZ010000000, and
            consists of sequences JBMREZ010000001-JBMREZ010000090.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049385605.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:48:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,350
            CDSs (total)                      :: 4,258
            Genes (coding)                    :: 4,223
            CDSs (with protein)               :: 4,223
            Genes (RNA)                       :: 92
            rRNAs                             :: 4, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4, 7 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 13 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 4 of 35
            Pseudo Genes (multiple problems)  :: 2 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4711981
                     /organism="Stenotrophomonas maltophilia"
                     /mol_type="genomic DNA"
                     /strain="CASM51"
                     /isolation_source="DTA"
                     /host="Homo sapiens"
                     /db_xref="taxon:40324"
                     /geo_loc_name="Lebanon"
                     /collection_date="2022-10-11"
WGS         JBMREZ010000001-JBMREZ010000090
WGS_SCAFLD  NZ_JBMREZ010000001-NZ_JBMREZ010000090
//
LOCUS       NZ_JBRRBA010000000   4364237 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN256, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBA000000000
VERSION     NZ_JBRRBA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030198
            Assembly: GCF_056755905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4364237)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4364237)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBA000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBA000000000.  This version of the
            project (01) has the accession number NZ_JBRRBA010000000, and
            consists of sequences JBRRBA010000001-JBRRBA010000112.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755905.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:27:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,987
            CDSs (total)                      :: 3,913
            Genes (coding)                    :: 3,886
            CDSs (with protein)               :: 3,886
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 4 of 27
            Pseudo Genes (incomplete)         :: 24 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4364237
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN256"
                     /isolation_source="River"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBA010000001-JBRRBA010000112
WGS_SCAFLD  NZ_JBRRBA010000001-NZ_JBRRBA010000112
//
LOCUS       NZ_JBRRBG010000000   4224296 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN250, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBG000000000
VERSION     NZ_JBRRBG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030192
            Assembly: GCF_056755995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4224296)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4224296)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBG000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBG000000000.  This version of the
            project (01) has the accession number NZ_JBRRBG010000000, and
            consists of sequences JBRRBG010000001-JBRRBG010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755995.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:40:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,831
            CDSs (total)                      :: 3,759
            Genes (coding)                    :: 3,737
            CDSs (with protein)               :: 3,737
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 6 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 3 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4224296
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN250"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBG010000001-JBRRBG010000029
WGS_SCAFLD  NZ_JBRRBG010000001-NZ_JBRRBG010000029
//
LOCUS       NZ_JBRRBP010000000   4622641 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lactitubi strain STEN236, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBP000000000
VERSION     NZ_JBRRBP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030178
            Assembly: GCF_056756255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lactitubi
  ORGANISM  Stenotrophomonas lactitubi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4622641)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4622641)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBP000000000.1.
            The Stenotrophomonas lactitubi whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBP000000000.  This version of the
            project (01) has the accession number NZ_JBRRBP010000000, and
            consists of sequences JBRRBP010000001-JBRRBP010000095.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:40:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,219
            CDSs (total)                      :: 4,143
            Genes (coding)                    :: 4,107
            CDSs (with protein)               :: 4,107
            Genes (RNA)                       :: 76
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 10 of 36
            Pseudo Genes (incomplete)         :: 28 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 3 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4622641
                     /organism="Stenotrophomonas lactitubi"
                     /mol_type="genomic DNA"
                     /strain="STEN236"
                     /isolation_source="River"
                     /db_xref="taxon:2045214"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBP010000001-JBRRBP010000095
WGS_SCAFLD  NZ_JBRRBP010000001-NZ_JBRRBP010000095
//
LOCUS       NZ_JBRRAW010000000   4047896 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN261, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRAW000000000
VERSION     NZ_JBRRAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030203
            Assembly: GCF_056754255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4047896)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4047896)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRAW000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRAW000000000.  This version of the
            project (01) has the accession number NZ_JBRRAW010000000, and
            consists of sequences JBRRAW010000001-JBRRAW010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:13:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,646
            CDSs (total)                      :: 3,569
            Genes (coding)                    :: 3,544
            CDSs (with protein)               :: 3,544
            Genes (RNA)                       :: 77
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 0 of 25
            Pseudo Genes (incomplete)         :: 25 of 25
            Pseudo Genes (internal stop)      :: 0 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4047896
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN261"
                     /isolation_source="Silver gull"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2020"
WGS         JBRRAW010000001-JBRRAW010000051
WGS_SCAFLD  NZ_JBRRAW010000001-NZ_JBRRAW010000051
//
LOCUS       NZ_JBRSBJ010000000   4483379 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN111, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBJ000000000
VERSION     NZ_JBRSBJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030053
            Assembly: GCF_056758675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4483379)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4483379)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBJ000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBJ000000000.  This version of the
            project (01) has the accession number NZ_JBRSBJ010000000, and
            consists of sequences JBRSBJ010000001-JBRSBJ010000107.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:16:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,161
            CDSs (total)                      :: 4,077
            Genes (coding)                    :: 4,050
            CDSs (with protein)               :: 4,050
            Genes (RNA)                       :: 84
            rRNAs                             :: 4, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 3 (5S, 16S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 8 of 27
            Pseudo Genes (incomplete)         :: 18 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            Pseudo Genes (multiple problems)  :: 3 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4483379
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN111"
                     /isolation_source="dairy"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBJ010000001-JBRSBJ010000107
WGS_SCAFLD  NZ_JBRSBJ010000001-NZ_JBRSBJ010000107
//
LOCUS       NZ_JBRSAY010000000   4480287 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN128, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAY000000000
VERSION     NZ_JBRSAY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030070
            Assembly: GCF_056758335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4480287)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4480287)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAY000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAY000000000.  This version of the
            project (01) has the accession number NZ_JBRSAY010000000, and
            consists of sequences JBRSAY010000001-JBRSAY010000144.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758335.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:11:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,191
            CDSs (total)                      :: 4,107
            Genes (coding)                    :: 4,065
            CDSs (with protein)               :: 4,065
            Genes (RNA)                       :: 84
            rRNAs                             :: 6, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6, 3 (5S, 16S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 8 of 42
            Pseudo Genes (incomplete)         :: 32 of 42
            Pseudo Genes (internal stop)      :: 5 of 42
            Pseudo Genes (multiple problems)  :: 3 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480287
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN128"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAY010000001-JBRSAY010000144
WGS_SCAFLD  NZ_JBRSAY010000001-NZ_JBRSAY010000144
//
LOCUS       NZ_JBRSAW010000000   4399831 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas pavanii strain STEN138, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAW000000000
VERSION     NZ_JBRSAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030080
            Assembly: GCF_056758175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas pavanii
  ORGANISM  Stenotrophomonas pavanii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 4399831)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4399831)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAW000000000.1.
            The Stenotrophomonas pavanii whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAW000000000.  This version of the
            project (01) has the accession number NZ_JBRSAW010000000, and
            consists of sequences JBRSAW010000001-JBRSAW010000131.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:58:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,037
            CDSs (total)                      :: 3,956
            Genes (coding)                    :: 3,925
            CDSs (with protein)               :: 3,925
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 10 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 1 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4399831
                     /organism="Stenotrophomonas pavanii"
                     /mol_type="genomic DNA"
                     /strain="STEN138"
                     /isolation_source="dairy"
                     /db_xref="taxon:487698"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAW010000001-JBRSAW010000131
WGS_SCAFLD  NZ_JBRSAW010000001-NZ_JBRSAW010000131
//
LOCUS       NZ_JBRRAY010000000   4472473 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN258, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRAY000000000
VERSION     NZ_JBRRAY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030200
            Assembly: GCF_056755815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4472473)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4472473)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRAY000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRAY000000000.  This version of the
            project (01) has the accession number NZ_JBRRAY010000000, and
            consists of sequences JBRRAY010000001-JBRRAY010000125.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:38:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,116
            CDSs (total)                      :: 4,046
            Genes (coding)                    :: 4,015
            CDSs (with protein)               :: 4,015
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 9 of 31
            Pseudo Genes (incomplete)         :: 28 of 31
            Pseudo Genes (internal stop)      :: 2 of 31
            Pseudo Genes (multiple problems)  :: 7 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4472473
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN258"
                     /isolation_source="Silver gull"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2020"
WGS         JBRRAY010000001-JBRRAY010000125
WGS_SCAFLD  NZ_JBRRAY010000001-NZ_JBRRAY010000125
//
LOCUS       NZ_JBRREM010000000   4164233 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN016, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRREM000000000
VERSION     NZ_JBRREM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029958
            Assembly: GCF_056760255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4164233)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4164233)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREM000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRREM000000000.  This version of the
            project (01) has the accession number NZ_JBRREM010000000, and
            consists of sequences JBRREM010000001-JBRREM010000084.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:24:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,745
            CDSs (total)                      :: 3,670
            Genes (coding)                    :: 3,640
            CDSs (with protein)               :: 3,640
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 4 of 30
            Pseudo Genes (incomplete)         :: 27 of 30
            Pseudo Genes (internal stop)      :: 2 of 30
            Pseudo Genes (multiple problems)  :: 3 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4164233
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN016"
                     /isolation_source="lake"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREM010000001-JBRREM010000084
WGS_SCAFLD  NZ_JBRREM010000001-NZ_JBRREM010000084
//
LOCUS       NZ_JBRRBL010000000   4214444 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN244, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBL000000000
VERSION     NZ_JBRRBL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030186
            Assembly: GCF_056756115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4214444)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4214444)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBL000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBL000000000.  This version of the
            project (01) has the accession number NZ_JBRRBL010000000, and
            consists of sequences JBRRBL010000001-JBRRBL010000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:34:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,791
            CDSs (total)                      :: 3,718
            Genes (coding)                    :: 3,696
            CDSs (with protein)               :: 3,696
            Genes (RNA)                       :: 73
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 3 of 22
            Pseudo Genes (incomplete)         :: 18 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4214444
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN244"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBL010000001-JBRRBL010000057
WGS_SCAFLD  NZ_JBRRBL010000001-NZ_JBRRBL010000057
//
LOCUS       NZ_JBRSBA010000000   4472144 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN126, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBA000000000
VERSION     NZ_JBRSBA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030068
            Assembly: GCF_056758375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4472144)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4472144)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBA000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBA000000000.  This version of the
            project (01) has the accession number NZ_JBRSBA010000000, and
            consists of sequences JBRSBA010000001-JBRSBA010000172.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:11:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,169
            CDSs (total)                      :: 4,085
            Genes (coding)                    :: 4,033
            CDSs (with protein)               :: 4,033
            Genes (RNA)                       :: 84
            rRNAs                             :: 5, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 4, 5, 2 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 11 of 52
            Pseudo Genes (incomplete)         :: 42 of 52
            Pseudo Genes (internal stop)      :: 4 of 52
            Pseudo Genes (multiple problems)  :: 4 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4472144
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN126"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBA010000001-JBRSBA010000172
WGS_SCAFLD  NZ_JBRSBA010000001-NZ_JBRSBA010000172
//
LOCUS       NZ_JBRSBF010000000   4781808 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN120, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBF000000000
VERSION     NZ_JBRSBF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030062
            Assembly: GCF_056758495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4781808)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4781808)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBF000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBF000000000.  This version of the
            project (01) has the accession number NZ_JBRSBF010000000, and
            consists of sequences JBRSBF010000001-JBRSBF010000134.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758495.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:09:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,434
            CDSs (total)                      :: 4,349
            Genes (coding)                    :: 4,313
            CDSs (with protein)               :: 4,313
            Genes (RNA)                       :: 85
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 26 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 8 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4781808
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN120"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBF010000001-JBRSBF010000134
WGS_SCAFLD  NZ_JBRSBF010000001-NZ_JBRSBF010000134
//
LOCUS       NZ_JBRRDF010000000   4366944 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN065, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDF000000000
VERSION     NZ_JBRRDF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030007
            Assembly: GCF_056759495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4366944)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4366944)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDF000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDF000000000.  This version of the
            project (01) has the accession number NZ_JBRRDF010000000, and
            consists of sequences JBRRDF010000001-JBRRDF010000084.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759495.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:22:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,912
            CDSs (total)                      :: 3,846
            Genes (coding)                    :: 3,815
            CDSs (with protein)               :: 3,815
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 25 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 3 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4366944
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN065"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDF010000001-JBRRDF010000084
WGS_SCAFLD  NZ_JBRRDF010000001-NZ_JBRRDF010000084
//
LOCUS       NZ_JBRRAX010000000   4607075 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN260, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRAX000000000
VERSION     NZ_JBRRAX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030202
            Assembly: GCF_056754305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4607075)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4607075)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRAX000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRAX000000000.  This version of the
            project (01) has the accession number NZ_JBRRAX010000000, and
            consists of sequences JBRRAX010000001-JBRRAX010000105.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:17:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,207
            CDSs (total)                      :: 4,132
            Genes (coding)                    :: 4,106
            CDSs (with protein)               :: 4,106
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4607075
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN260"
                     /isolation_source="Silver gull"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2020"
WGS         JBRRAX010000001-JBRRAX010000105
WGS_SCAFLD  NZ_JBRRAX010000001-NZ_JBRRAX010000105
//
LOCUS       NZ_JBRSAJ010000000   4670632 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN186, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAJ000000000
VERSION     NZ_JBRSAJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030128
            Assembly: GCF_056757215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4670632)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4670632)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAJ000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAJ000000000.  This version of the
            project (01) has the accession number NZ_JBRSAJ010000000, and
            consists of sequences JBRSAJ010000001-JBRSAJ010000130.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757215.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:44:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,298
            CDSs (total)                      :: 4,219
            Genes (coding)                    :: 4,189
            CDSs (with protein)               :: 4,189
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 10 of 30
            Pseudo Genes (incomplete)         :: 22 of 30
            Pseudo Genes (internal stop)      :: 5 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4670632
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN186"
                     /isolation_source="dairy"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAJ010000001-JBRSAJ010000130
WGS_SCAFLD  NZ_JBRSAJ010000001-NZ_JBRSAJ010000130
//
LOCUS       NZ_JBRRBH010000000   4212591 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN249, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBH000000000
VERSION     NZ_JBRRBH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030191
            Assembly: GCF_056756035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4212591)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4212591)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBH000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBH000000000.  This version of the
            project (01) has the accession number NZ_JBRRBH010000000, and
            consists of sequences JBRRBH010000001-JBRRBH010000061.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756035.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:35:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,780
            CDSs (total)                      :: 3,704
            Genes (coding)                    :: 3,668
            CDSs (with protein)               :: 3,668
            Genes (RNA)                       :: 76
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 7 of 36
            Pseudo Genes (incomplete)         :: 28 of 36
            Pseudo Genes (internal stop)      :: 4 of 36
            Pseudo Genes (multiple problems)  :: 3 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4212591
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN249"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBH010000001-JBRRBH010000061
WGS_SCAFLD  NZ_JBRRBH010000001-NZ_JBRRBH010000061
//
LOCUS       NZ_JBRRBI010000000   4164271 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN247, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBI000000000
VERSION     NZ_JBRRBI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030189
            Assembly: GCF_056756055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4164271)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4164271)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBI000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBI000000000.  This version of the
            project (01) has the accession number NZ_JBRRBI010000000, and
            consists of sequences JBRRBI010000001-JBRRBI010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756055.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:50:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,776
            CDSs (total)                      :: 3,702
            Genes (coding)                    :: 3,670
            CDSs (with protein)               :: 3,670
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 9 of 32
            Pseudo Genes (incomplete)         :: 23 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 4 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4164271
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN247"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBI010000001-JBRRBI010000066
WGS_SCAFLD  NZ_JBRRBI010000001-NZ_JBRRBI010000066
//
LOCUS       NZ_JBRREV010000000   4546803 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN006, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRREV000000000
VERSION     NZ_JBRREV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029948
            Assembly: GCF_056760475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4546803)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4546803)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREV000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRREV000000000.  This version of the
            project (01) has the accession number NZ_JBRREV010000000, and
            consists of sequences JBRREV010000001-JBRREV010000217.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:34:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,114
            CDSs (total)                      :: 4,041
            Genes (coding)                    :: 4,017
            CDSs (with protein)               :: 4,017
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4546803
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN006"
                     /isolation_source="lake"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREV010000001-JBRREV010000217
WGS_SCAFLD  NZ_JBRREV010000001-NZ_JBRREV010000217
//
LOCUS       NZ_JBRSAV010000000   4780621 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN139, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAV000000000
VERSION     NZ_JBRSAV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030081
            Assembly: GCF_056758155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4780621)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4780621)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAV000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAV000000000.  This version of the
            project (01) has the accession number NZ_JBRSAV010000000, and
            consists of sequences JBRSAV010000001-JBRSAV010000123.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:04:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,440
            CDSs (total)                      :: 4,358
            Genes (coding)                    :: 4,314
            CDSs (with protein)               :: 4,314
            Genes (RNA)                       :: 82
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 14 of 44
            Pseudo Genes (incomplete)         :: 34 of 44
            Pseudo Genes (internal stop)      :: 5 of 44
            Pseudo Genes (multiple problems)  :: 8 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4780621
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN139"
                     /isolation_source="hospital"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAV010000001-JBRSAV010000123
WGS_SCAFLD  NZ_JBRSAV010000001-NZ_JBRSAV010000123
//
LOCUS       NZ_JBRSAT010000000   4480944 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN149, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAT000000000
VERSION     NZ_JBRSAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030091
            Assembly: GCF_056757955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4480944)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4480944)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAT000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAT000000000.  This version of the
            project (01) has the accession number NZ_JBRSAT010000000, and
            consists of sequences JBRSAT010000001-JBRSAT010000104.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757955.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:51:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,163
            CDSs (total)                      :: 4,076
            Genes (coding)                    :: 4,048
            CDSs (with protein)               :: 4,048
            Genes (RNA)                       :: 87
            rRNAs                             :: 6, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 8 of 28
            Pseudo Genes (incomplete)         :: 19 of 28
            Pseudo Genes (internal stop)      :: 4 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480944
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN149"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAT010000001-JBRSAT010000104
WGS_SCAFLD  NZ_JBRSAT010000001-NZ_JBRSAT010000104
//
LOCUS       NZ_JBRSAG010000000   4670742 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN189, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAG000000000
VERSION     NZ_JBRSAG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030131
            Assembly: GCF_056757175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4670742)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4670742)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAG000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAG000000000.  This version of the
            project (01) has the accession number NZ_JBRSAG010000000, and
            consists of sequences JBRSAG010000001-JBRSAG010000138.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:40:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,302
            CDSs (total)                      :: 4,222
            Genes (coding)                    :: 4,187
            CDSs (with protein)               :: 4,187
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 11 of 35
            Pseudo Genes (incomplete)         :: 25 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 6 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4670742
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN189"
                     /isolation_source="dairy"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAG010000001-JBRSAG010000138
WGS_SCAFLD  NZ_JBRSAG010000001-NZ_JBRSAG010000138
//
LOCUS       NZ_JBRSAM010000000   4668414 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN183, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAM000000000
VERSION     NZ_JBRSAM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030125
            Assembly: GCF_056757275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4668414)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4668414)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAM000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAM000000000.  This version of the
            project (01) has the accession number NZ_JBRSAM010000000, and
            consists of sequences JBRSAM010000001-JBRSAM010000118.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757275.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:47:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,293
            CDSs (total)                      :: 4,214
            Genes (coding)                    :: 4,180
            CDSs (with protein)               :: 4,180
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 10 of 34
            Pseudo Genes (incomplete)         :: 25 of 34
            Pseudo Genes (internal stop)      :: 6 of 34
            Pseudo Genes (multiple problems)  :: 6 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4668414
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN183"
                     /isolation_source="dairy"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAM010000001-JBRSAM010000118
WGS_SCAFLD  NZ_JBRSAM010000001-NZ_JBRSAM010000118
//
LOCUS       NZ_JBRSBO010000000   3855619 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lacuserhaii strain STEN066, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBO000000000
VERSION     NZ_JBRSBO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030008
            Assembly: GCF_056759475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lacuserhaii
  ORGANISM  Stenotrophomonas lacuserhaii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3855619)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3855619)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBO000000000.1.
            The Stenotrophomonas lacuserhaii whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBO000000000.  This version of the
            project (01) has the accession number NZ_JBRSBO010000000, and
            consists of sequences JBRSBO010000001-JBRSBO010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:19:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,474
            CDSs (total)                      :: 3,399
            Genes (coding)                    :: 3,370
            CDSs (with protein)               :: 3,370
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 9 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3855619
                     /organism="Stenotrophomonas lacuserhaii"
                     /mol_type="genomic DNA"
                     /strain="STEN066"
                     /isolation_source="Dam"
                     /db_xref="taxon:2760084"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBO010000001-JBRSBO010000070
WGS_SCAFLD  NZ_JBRSBO010000001-NZ_JBRSBO010000070
//
LOCUS       NZ_JBRSAR010000000   4480735 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN155, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAR000000000
VERSION     NZ_JBRSAR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030097
            Assembly: GCF_056757855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4480735)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4480735)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAR000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAR000000000.  This version of the
            project (01) has the accession number NZ_JBRSAR010000000, and
            consists of sequences JBRSAR010000001-JBRSAR010000119.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757855.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:54:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,168
            CDSs (total)                      :: 4,080
            Genes (coding)                    :: 4,051
            CDSs (with protein)               :: 4,051
            Genes (RNA)                       :: 88
            rRNAs                             :: 6, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 8 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 5 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480735
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN155"
                     /isolation_source="Vegetable Farm"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAR010000001-JBRSAR010000119
WGS_SCAFLD  NZ_JBRSAR010000001-NZ_JBRSAR010000119
//
LOCUS       NZ_JBRRAV010000000   4596073 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN263, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRAV000000000
VERSION     NZ_JBRRAV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030205
            Assembly: GCF_056754245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4596073)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4596073)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRAV000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRAV000000000.  This version of the
            project (01) has the accession number NZ_JBRRAV010000000, and
            consists of sequences JBRRAV010000001-JBRRAV010000150.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754245.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:15:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,166
            CDSs (total)                      :: 4,095
            Genes (coding)                    :: 4,056
            CDSs (with protein)               :: 4,056
            Genes (RNA)                       :: 71
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 10 of 39
            Pseudo Genes (incomplete)         :: 30 of 39
            Pseudo Genes (internal stop)      :: 6 of 39
            Pseudo Genes (multiple problems)  :: 6 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596073
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN263"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2020"
WGS         JBRRAV010000001-JBRRAV010000150
WGS_SCAFLD  NZ_JBRRAV010000001-NZ_JBRRAV010000150
//
LOCUS       NZ_JBRRDI010000000   4155683 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN059, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDI000000000
VERSION     NZ_JBRRDI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030001
            Assembly: GCF_056759575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4155683)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4155683)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDI000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDI000000000.  This version of the
            project (01) has the accession number NZ_JBRRDI010000000, and
            consists of sequences JBRRDI010000001-JBRRDI010000099.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759575.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:26:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,791
            CDSs (total)                      :: 3,720
            Genes (coding)                    :: 3,685
            CDSs (with protein)               :: 3,685
            Genes (RNA)                       :: 71
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 4 of 35
            Pseudo Genes (incomplete)         :: 29 of 35
            Pseudo Genes (internal stop)      :: 3 of 35
            Pseudo Genes (multiple problems)  :: 1 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4155683
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN059"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDI010000001-JBRRDI010000099
WGS_SCAFLD  NZ_JBRRDI010000001-NZ_JBRRDI010000099
//
LOCUS       NZ_JBRREQ010000000   4548527 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN011, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRREQ000000000
VERSION     NZ_JBRREQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029953
            Assembly: GCF_056760375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4548527)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4548527)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREQ000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRREQ000000000.  This version of the
            project (01) has the accession number NZ_JBRREQ010000000, and
            consists of sequences JBRREQ010000001-JBRREQ010000193.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:25:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,122
            CDSs (total)                      :: 4,048
            Genes (coding)                    :: 4,018
            CDSs (with protein)               :: 4,018
            Genes (RNA)                       :: 74
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 2 of 30
            Pseudo Genes (incomplete)         :: 27 of 30
            Pseudo Genes (internal stop)      :: 2 of 30
            Pseudo Genes (multiple problems)  :: 1 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4548527
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN011"
                     /isolation_source="lake"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREQ010000001-JBRREQ010000193
WGS_SCAFLD  NZ_JBRREQ010000001-NZ_JBRREQ010000193
//
LOCUS       NZ_JBRRAU010000000   4026010 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN265, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRAU000000000
VERSION     NZ_JBRRAU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030207
            Assembly: GCF_056754195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4026010)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4026010)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRAU000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRAU000000000.  This version of the
            project (01) has the accession number NZ_JBRRAU010000000, and
            consists of sequences JBRRAU010000001-JBRRAU010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754195.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:09:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,610
            CDSs (total)                      :: 3,532
            Genes (coding)                    :: 3,504
            CDSs (with protein)               :: 3,504
            Genes (RNA)                       :: 78
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 2 of 28
            Pseudo Genes (incomplete)         :: 25 of 28
            Pseudo Genes (internal stop)      :: 1 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026010
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN265"
                     /isolation_source="Coot"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2020"
WGS         JBRRAU010000001-JBRRAU010000051
WGS_SCAFLD  NZ_JBRRAU010000001-NZ_JBRRAU010000051
//
LOCUS       NZ_JBRSBH010000000   4590269 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN118, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBH000000000
VERSION     NZ_JBRSBH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030060
            Assembly: GCF_056758535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4590269)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4590269)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBH000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBH000000000.  This version of the
            project (01) has the accession number NZ_JBRSBH010000000, and
            consists of sequences JBRSBH010000001-JBRSBH010000118.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758535.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:12:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,240
            CDSs (total)                      :: 4,160
            Genes (coding)                    :: 4,119
            CDSs (with protein)               :: 4,119
            Genes (RNA)                       :: 80
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 11 of 41
            Pseudo Genes (incomplete)         :: 31 of 41
            Pseudo Genes (internal stop)      :: 4 of 41
            Pseudo Genes (multiple problems)  :: 5 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4590269
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN118"
                     /isolation_source="dairy"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBH010000001-JBRSBH010000118
WGS_SCAFLD  NZ_JBRSBH010000001-NZ_JBRSBH010000118
//
LOCUS       NZ_JBRRBJ010000000   4644016 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lactitubi strain STEN246, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBJ000000000
VERSION     NZ_JBRRBJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030188
            Assembly: GCF_056756075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lactitubi
  ORGANISM  Stenotrophomonas lactitubi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4644016)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4644016)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBJ000000000.1.
            The Stenotrophomonas lactitubi whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBJ000000000.  This version of the
            project (01) has the accession number NZ_JBRRBJ010000000, and
            consists of sequences JBRRBJ010000001-JBRRBJ010000099.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756075.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:41:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,239
            CDSs (total)                      :: 4,164
            Genes (coding)                    :: 4,138
            CDSs (with protein)               :: 4,138
            Genes (RNA)                       :: 75
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 11 of 26
            Pseudo Genes (incomplete)         :: 15 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4644016
                     /organism="Stenotrophomonas lactitubi"
                     /mol_type="genomic DNA"
                     /strain="STEN246"
                     /isolation_source="River"
                     /db_xref="taxon:2045214"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBJ010000001-JBRRBJ010000099
WGS_SCAFLD  NZ_JBRRBJ010000001-NZ_JBRRBJ010000099
//
LOCUS       NZ_JBRRAT010000000   4032463 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN266, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRAT000000000
VERSION     NZ_JBRRAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030208
            Assembly: GCF_056754175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4032463)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4032463)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRAT000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRAT000000000.  This version of the
            project (01) has the accession number NZ_JBRRAT010000000, and
            consists of sequences JBRRAT010000001-JBRRAT010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:07:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,598
            CDSs (total)                      :: 3,522
            Genes (coding)                    :: 3,503
            CDSs (with protein)               :: 3,503
            Genes (RNA)                       :: 76
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 4 of 19
            Pseudo Genes (incomplete)         :: 16 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4032463
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN266"
                     /isolation_source="Park"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2020"
WGS         JBRRAT010000001-JBRRAT010000022
WGS_SCAFLD  NZ_JBRRAT010000001-NZ_JBRRAT010000022
//
LOCUS       NZ_JBRRBF010000000   4163289 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN251, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBF000000000
VERSION     NZ_JBRRBF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030193
            Assembly: GCF_056755975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4163289)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4163289)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBF000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBF000000000.  This version of the
            project (01) has the accession number NZ_JBRRBF010000000, and
            consists of sequences JBRRBF010000001-JBRRBF010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:34:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,754
            CDSs (total)                      :: 3,680
            Genes (coding)                    :: 3,659
            CDSs (with protein)               :: 3,659
            Genes (RNA)                       :: 74
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 3 of 21
            Pseudo Genes (incomplete)         :: 18 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            Pseudo Genes (multiple problems)  :: 1 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4163289
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN251"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBF010000001-JBRRBF010000036
WGS_SCAFLD  NZ_JBRRBF010000001-NZ_JBRRBF010000036
//
LOCUS       NZ_JBRSBV010000000   4336323 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas pavanii strain STEN015, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBV000000000
VERSION     NZ_JBRSBV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029957
            Assembly: GCF_056760295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas pavanii
  ORGANISM  Stenotrophomonas pavanii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 4336323)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4336323)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBV000000000.1.
            The Stenotrophomonas pavanii whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBV000000000.  This version of the
            project (01) has the accession number NZ_JBRSBV010000000, and
            consists of sequences JBRSBV010000001-JBRSBV010000227.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:31:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,971
            CDSs (total)                      :: 3,896
            Genes (coding)                    :: 3,856
            CDSs (with protein)               :: 3,856
            Genes (RNA)                       :: 75
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 9 of 40
            Pseudo Genes (incomplete)         :: 29 of 40
            Pseudo Genes (internal stop)      :: 3 of 40
            Pseudo Genes (multiple problems)  :: 1 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4336323
                     /organism="Stenotrophomonas pavanii"
                     /mol_type="genomic DNA"
                     /strain="STEN015"
                     /isolation_source="lake"
                     /db_xref="taxon:487698"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBV010000001-JBRSBV010000227
WGS_SCAFLD  NZ_JBRSBV010000001-NZ_JBRSBV010000227
//
LOCUS       NZ_JBRRDN010000000   4473144 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN052, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDN000000000
VERSION     NZ_JBRRDN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029994
            Assembly: GCF_056759675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4473144)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4473144)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDN000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDN000000000.  This version of the
            project (01) has the accession number NZ_JBRRDN010000000, and
            consists of sequences JBRRDN010000001-JBRRDN010000165.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:20:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,088
            CDSs (total)                      :: 4,014
            Genes (coding)                    :: 3,977
            CDSs (with protein)               :: 3,977
            Genes (RNA)                       :: 74
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 4 of 37
            Pseudo Genes (incomplete)         :: 34 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 2 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4473144
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN052"
                     /isolation_source="Wetland"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDN010000001-JBRRDN010000165
WGS_SCAFLD  NZ_JBRRDN010000001-NZ_JBRRDN010000165
//
LOCUS       NZ_JBRRBE010000000   4220472 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN252, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBE000000000
VERSION     NZ_JBRRBE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030194
            Assembly: GCF_056755935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4220472)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4220472)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBE000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBE000000000.  This version of the
            project (01) has the accession number NZ_JBRRBE010000000, and
            consists of sequences JBRRBE010000001-JBRRBE010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755935.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:32:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,774
            CDSs (total)                      :: 3,696
            Genes (coding)                    :: 3,675
            CDSs (with protein)               :: 3,675
            Genes (RNA)                       :: 78
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 4 of 21
            Pseudo Genes (incomplete)         :: 20 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 5 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4220472
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN252"
                     /isolation_source="Sea"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBE010000001-JBRRBE010000041
WGS_SCAFLD  NZ_JBRRBE010000001-NZ_JBRRBE010000041
//
LOCUS       NZ_JBRSAL010000000   4468331 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN184, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAL000000000
VERSION     NZ_JBRSAL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030126
            Assembly: GCF_056757255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4468331)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4468331)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAL000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAL000000000.  This version of the
            project (01) has the accession number NZ_JBRSAL010000000, and
            consists of sequences JBRSAL010000001-JBRSAL010000103.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:44:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,128
            CDSs (total)                      :: 4,051
            Genes (coding)                    :: 4,016
            CDSs (with protein)               :: 4,016
            Genes (RNA)                       :: 77
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 11 of 35
            Pseudo Genes (incomplete)         :: 24 of 35
            Pseudo Genes (internal stop)      :: 5 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4468331
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN184"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAL010000001-JBRSAL010000103
WGS_SCAFLD  NZ_JBRSAL010000001-NZ_JBRSAL010000103
//
LOCUS       NZ_JBRSAB010000000   4481502 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN248, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAB000000000
VERSION     NZ_JBRSAB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030190
            Assembly: GCF_056756015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4481502)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4481502)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAB000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAB000000000.  This version of the
            project (01) has the accession number NZ_JBRSAB010000000, and
            consists of sequences JBRSAB010000001-JBRSAB010000105.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756015.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:32:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,161
            CDSs (total)                      :: 4,076
            Genes (coding)                    :: 4,050
            CDSs (with protein)               :: 4,050
            Genes (RNA)                       :: 85
            rRNAs                             :: 4, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 3 (5S, 16S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 8 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4481502
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN248"
                     /isolation_source="River"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRSAB010000001-JBRSAB010000105
WGS_SCAFLD  NZ_JBRSAB010000001-NZ_JBRSAB010000105
//
LOCUS       NZ_JBRRBD010000000   4161636 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN253, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBD000000000
VERSION     NZ_JBRRBD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030195
            Assembly: GCF_056755955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4161636)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4161636)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBD000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBD000000000.  This version of the
            project (01) has the accession number NZ_JBRRBD010000000, and
            consists of sequences JBRRBD010000001-JBRRBD010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755955.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:37:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,728
            CDSs (total)                      :: 3,655
            Genes (coding)                    :: 3,626
            CDSs (with protein)               :: 3,626
            Genes (RNA)                       :: 73
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 24 of 29
            Pseudo Genes (internal stop)      :: 7 of 29
            Pseudo Genes (multiple problems)  :: 7 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4161636
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN253"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBD010000001-JBRRBD010000033
WGS_SCAFLD  NZ_JBRRBD010000001-NZ_JBRRBD010000033
//
LOCUS       NZ_JBRSBQ010000000   4511468 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas forensis strain STEN043, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBQ000000000
VERSION     NZ_JBRSBQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029985
            Assembly: GCF_056759795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas forensis
  ORGANISM  Stenotrophomonas forensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 4511468)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4511468)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBQ000000000.1.
            The Stenotrophomonas forensis whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBQ000000000.  This version of the
            project (01) has the accession number NZ_JBRSBQ010000000, and
            consists of sequences JBRSBQ010000001-JBRSBQ010000208.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:22:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,105
            CDSs (total)                      :: 4,028
            Genes (coding)                    :: 4,006
            CDSs (with protein)               :: 4,006
            Genes (RNA)                       :: 77
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 6 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            Pseudo Genes (multiple problems)  :: 1 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4511468
                     /organism="Stenotrophomonas forensis"
                     /mol_type="genomic DNA"
                     /strain="STEN043"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:2871169"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBQ010000001-JBRSBQ010000208
WGS_SCAFLD  NZ_JBRSBQ010000001-NZ_JBRSBQ010000208
//
LOCUS       NZ_JBRRBB010000000   4576106 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN255, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBB000000000
VERSION     NZ_JBRRBB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030197
            Assembly: GCF_056755875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4576106)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4576106)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBB000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBB000000000.  This version of the
            project (01) has the accession number NZ_JBRRBB010000000, and
            consists of sequences JBRRBB010000001-JBRRBB010000130.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755875.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:35:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,189
            CDSs (total)                      :: 4,117
            Genes (coding)                    :: 4,082
            CDSs (with protein)               :: 4,082
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 8 of 35
            Pseudo Genes (incomplete)         :: 28 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 2 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4576106
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN255"
                     /isolation_source="River"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBB010000001-JBRRBB010000130
WGS_SCAFLD  NZ_JBRRBB010000001-NZ_JBRRBB010000130
//
LOCUS       NZ_JBRRDH010000000   4622005 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN060, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDH000000000
VERSION     NZ_JBRRDH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030002
            Assembly: GCF_056759555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4622005)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4622005)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDH000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDH000000000.  This version of the
            project (01) has the accession number NZ_JBRRDH010000000, and
            consists of sequences JBRRDH010000001-JBRRDH010000139.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 7.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:27:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,118
            CDSs (total)                      :: 4,048
            Genes (coding)                    :: 4,021
            CDSs (with protein)               :: 4,021
            Genes (RNA)                       :: 70
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 2 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            Pseudo Genes (multiple problems)  :: 1 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4622005
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN060"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDH010000001-JBRRDH010000139
WGS_SCAFLD  NZ_JBRRDH010000001-NZ_JBRRDH010000139
//
LOCUS       NZ_JBRSBR010000000   5010849 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas africana strain STEN042, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBR000000000
VERSION     NZ_JBRSBR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029984
            Assembly: GCF_056759815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas africana
  ORGANISM  Stenotrophomonas africana
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 5010849)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5010849)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBR000000000.1.
            The Stenotrophomonas africana whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBR000000000.  This version of the
            project (01) has the accession number NZ_JBRSBR010000000, and
            consists of sequences JBRSBR010000001-JBRSBR010000181.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:27:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,729
            CDSs (total)                      :: 4,648
            Genes (coding)                    :: 4,586
            CDSs (with protein)               :: 4,586
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 13 of 62
            Pseudo Genes (incomplete)         :: 45 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 6 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5010849
                     /organism="Stenotrophomonas africana"
                     /mol_type="genomic DNA"
                     /strain="STEN042"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:1292134"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBR010000001-JBRSBR010000181
WGS_SCAFLD  NZ_JBRSBR010000001-NZ_JBRSBR010000181
//
LOCUS       NZ_JBRSBX010000000   4719609 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN003, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBX000000000
VERSION     NZ_JBRSBX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029945
            Assembly: GCF_056760535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4719609)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4719609)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBX000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBX000000000.  This version of the
            project (01) has the accession number NZ_JBRSBX010000000, and
            consists of sequences JBRSBX010000001-JBRSBX010000205.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760535.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,377
            CDSs (total)                      :: 4,303
            Genes (coding)                    :: 4,251
            CDSs (with protein)               :: 4,251
            Genes (RNA)                       :: 74
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 23 of 52
            Pseudo Genes (incomplete)         :: 31 of 52
            Pseudo Genes (internal stop)      :: 9 of 52
            Pseudo Genes (multiple problems)  :: 10 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4719609
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN003"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBX010000001-JBRSBX010000205
WGS_SCAFLD  NZ_JBRSBX010000001-NZ_JBRSBX010000205
//
LOCUS       NZ_JBRSAC010000000   4589578 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN214, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAC000000000
VERSION     NZ_JBRSAC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030156
            Assembly: GCF_056756655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4589578)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4589578)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAC000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAC000000000.  This version of the
            project (01) has the accession number NZ_JBRSAC010000000, and
            consists of sequences JBRSAC010000001-JBRSAC010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756655.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:44:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,243
            CDSs (total)                      :: 4,163
            Genes (coding)                    :: 4,116
            CDSs (with protein)               :: 4,116
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 11 of 47
            Pseudo Genes (incomplete)         :: 38 of 47
            Pseudo Genes (internal stop)      :: 4 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4589578
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN214"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAC010000001-JBRSAC010000158
WGS_SCAFLD  NZ_JBRSAC010000001-NZ_JBRSAC010000158
//
LOCUS       NZ_JBRRER010000000   4588973 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN010, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRER000000000
VERSION     NZ_JBRRER000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029952
            Assembly: GCF_056760415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4588973)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4588973)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRER000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRER000000000.  This version of the
            project (01) has the accession number NZ_JBRRER010000000, and
            consists of sequences JBRRER010000001-JBRRER010000203.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:39:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,164
            CDSs (total)                      :: 4,089
            Genes (coding)                    :: 4,055
            CDSs (with protein)               :: 4,055
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 6 of 34
            Pseudo Genes (incomplete)         :: 29 of 34
            Pseudo Genes (internal stop)      :: 2 of 34
            Pseudo Genes (multiple problems)  :: 3 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4588973
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN010"
                     /isolation_source="lake"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRER010000001-JBRRER010000203
WGS_SCAFLD  NZ_JBRRER010000001-NZ_JBRRER010000203
//
LOCUS       NZ_JBRSBG010000000   4471127 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN119, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBG000000000
VERSION     NZ_JBRSBG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030061
            Assembly: GCF_056758515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4471127)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4471127)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBG000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBG000000000.  This version of the
            project (01) has the accession number NZ_JBRSBG010000000, and
            consists of sequences JBRSBG010000001-JBRSBG010000101.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758515.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:01:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,125
            CDSs (total)                      :: 4,049
            Genes (coding)                    :: 4,020
            CDSs (with protein)               :: 4,020
            Genes (RNA)                       :: 76
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 11 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 5 of 29
            Pseudo Genes (multiple problems)  :: 5 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4471127
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN119"
                     /isolation_source="Vegetable Farm"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBG010000001-JBRSBG010000101
WGS_SCAFLD  NZ_JBRSBG010000001-NZ_JBRSBG010000101
//
LOCUS       NZ_JBRRDU010000000   4493091 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN040, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDU000000000
VERSION     NZ_JBRRDU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029982
            Assembly: GCF_056759835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4493091)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4493091)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDU000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDU000000000.  This version of the
            project (01) has the accession number NZ_JBRRDU010000000, and
            consists of sequences JBRRDU010000001-JBRRDU010000108.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759835.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:20:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,127
            CDSs (total)                      :: 4,064
            Genes (coding)                    :: 4,010
            CDSs (with protein)               :: 4,010
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 14 of 54
            Pseudo Genes (incomplete)         :: 40 of 54
            Pseudo Genes (internal stop)      :: 4 of 54
            Pseudo Genes (multiple problems)  :: 4 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4493091
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN040"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDU010000001-JBRRDU010000108
WGS_SCAFLD  NZ_JBRRDU010000001-NZ_JBRRDU010000108
//
LOCUS       NZ_JBRSBD010000000   4590971 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN122, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBD000000000
VERSION     NZ_JBRSBD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030064
            Assembly: GCF_056758455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4590971)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4590971)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBD000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBD000000000.  This version of the
            project (01) has the accession number NZ_JBRSBD010000000, and
            consists of sequences JBRSBD010000001-JBRSBD010000111.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758455.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:12:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,243
            CDSs (total)                      :: 4,158
            Genes (coding)                    :: 4,117
            CDSs (with protein)               :: 4,117
            Genes (RNA)                       :: 85
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 12 of 41
            Pseudo Genes (incomplete)         :: 31 of 41
            Pseudo Genes (internal stop)      :: 4 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4590971
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN122"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBD010000001-JBRSBD010000111
WGS_SCAFLD  NZ_JBRSBD010000001-NZ_JBRSBD010000111
//
LOCUS       NZ_JBRSAD010000000   4467368 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN213, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAD000000000
VERSION     NZ_JBRSAD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030155
            Assembly: GCF_056756675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4467368)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4467368)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAD000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAD000000000.  This version of the
            project (01) has the accession number NZ_JBRSAD010000000, and
            consists of sequences JBRSAD010000001-JBRSAD010000133.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:44:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,135
            CDSs (total)                      :: 4,055
            Genes (coding)                    :: 4,023
            CDSs (with protein)               :: 4,023
            Genes (RNA)                       :: 80
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 11 of 32
            Pseudo Genes (incomplete)         :: 22 of 32
            Pseudo Genes (internal stop)      :: 5 of 32
            Pseudo Genes (multiple problems)  :: 5 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4467368
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN213"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAD010000001-JBRSAD010000133
WGS_SCAFLD  NZ_JBRSAD010000001-NZ_JBRSAD010000133
//
LOCUS       NZ_JBRSBI010000000   4467660 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN117, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBI000000000
VERSION     NZ_JBRSBI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030059
            Assembly: GCF_056758555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4467660)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4467660)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBI000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBI000000000.  This version of the
            project (01) has the accession number NZ_JBRSBI010000000, and
            consists of sequences JBRSBI010000001-JBRSBI010000116.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:07:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,128
            CDSs (total)                      :: 4,053
            Genes (coding)                    :: 4,020
            CDSs (with protein)               :: 4,020
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 11 of 33
            Pseudo Genes (incomplete)         :: 23 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 5 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4467660
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN117"
                     /isolation_source="Vegetable Farm"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBI010000001-JBRSBI010000116
WGS_SCAFLD  NZ_JBRSBI010000001-NZ_JBRSBI010000116
//
LOCUS       NZ_JBRSAH010000000   4670330 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN188, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAH000000000
VERSION     NZ_JBRSAH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030130
            Assembly: GCF_056757155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4670330)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4670330)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAH000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAH000000000.  This version of the
            project (01) has the accession number NZ_JBRSAH010000000, and
            consists of sequences JBRSAH010000001-JBRSAH010000121.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:46:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,293
            CDSs (total)                      :: 4,216
            Genes (coding)                    :: 4,183
            CDSs (with protein)               :: 4,183
            Genes (RNA)                       :: 77
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 10 of 33
            Pseudo Genes (incomplete)         :: 25 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 6 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4670330
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN188"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAH010000001-JBRSAH010000121
WGS_SCAFLD  NZ_JBRSAH010000001-NZ_JBRSAH010000121
//
LOCUS       NZ_JBRSAZ010000000   4591590 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN127, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAZ000000000
VERSION     NZ_JBRSAZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030069
            Assembly: GCF_056758355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4591590)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4591590)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAZ000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAZ000000000.  This version of the
            project (01) has the accession number NZ_JBRSAZ010000000, and
            consists of sequences JBRSAZ010000001-JBRSAZ010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758355.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:11:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,236
            CDSs (total)                      :: 4,155
            Genes (coding)                    :: 4,118
            CDSs (with protein)               :: 4,118
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 10 of 37
            Pseudo Genes (incomplete)         :: 28 of 37
            Pseudo Genes (internal stop)      :: 4 of 37
            Pseudo Genes (multiple problems)  :: 5 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4591590
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN127"
                     /isolation_source="hospital"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAZ010000001-JBRSAZ010000117
WGS_SCAFLD  NZ_JBRSAZ010000001-NZ_JBRSAZ010000117
//
LOCUS       NZ_JBRSBS010000000   4884128 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN028, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBS000000000
VERSION     NZ_JBRSBS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029970
            Assembly: GCF_056760035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4884128)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4884128)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBS000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBS000000000.  This version of the
            project (01) has the accession number NZ_JBRSBS010000000, and
            consists of sequences JBRSBS010000001-JBRSBS010000188.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760035.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:25:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,617
            CDSs (total)                      :: 4,529
            Genes (coding)                    :: 4,474
            CDSs (with protein)               :: 4,474
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 18 of 55
            Pseudo Genes (incomplete)         :: 40 of 55
            Pseudo Genes (internal stop)      :: 3 of 55
            Pseudo Genes (multiple problems)  :: 5 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4884128
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN028"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBS010000001-JBRSBS010000188
WGS_SCAFLD  NZ_JBRSBS010000001-NZ_JBRSBS010000188
//
LOCUS       NZ_JBRRDJ010000000   4122887 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN058, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDJ000000000
VERSION     NZ_JBRRDJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030000
            Assembly: GCF_056759615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4122887)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4122887)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDJ000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDJ000000000.  This version of the
            project (01) has the accession number NZ_JBRRDJ010000000, and
            consists of sequences JBRRDJ010000001-JBRRDJ010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:14:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,685
            CDSs (total)                      :: 3,608
            Genes (coding)                    :: 3,581
            CDSs (with protein)               :: 3,581
            Genes (RNA)                       :: 77
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 6 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4122887
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN058"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDJ010000001-JBRRDJ010000060
WGS_SCAFLD  NZ_JBRRDJ010000001-NZ_JBRRDJ010000060
//
LOCUS       NZ_JBRSBL010000000   4043361 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lacuserhaii strain STEN078, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBL000000000
VERSION     NZ_JBRSBL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030020
            Assembly: GCF_056759295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lacuserhaii
  ORGANISM  Stenotrophomonas lacuserhaii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4043361)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4043361)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBL000000000.1.
            The Stenotrophomonas lacuserhaii whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBL000000000.  This version of the
            project (01) has the accession number NZ_JBRSBL010000000, and
            consists of sequences JBRSBL010000001-JBRSBL010000101.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:19:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,650
            CDSs (total)                      :: 3,580
            Genes (coding)                    :: 3,540
            CDSs (with protein)               :: 3,540
            Genes (RNA)                       :: 70
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 13 of 40
            Pseudo Genes (incomplete)         :: 32 of 40
            Pseudo Genes (internal stop)      :: 4 of 40
            Pseudo Genes (multiple problems)  :: 7 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4043361
                     /organism="Stenotrophomonas lacuserhaii"
                     /mol_type="genomic DNA"
                     /strain="STEN078"
                     /isolation_source="River"
                     /db_xref="taxon:2760084"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBL010000001-JBRSBL010000101
WGS_SCAFLD  NZ_JBRSBL010000001-NZ_JBRSBL010000101
//
LOCUS       NZ_JBRREP010000000   3948031 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN012, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRREP000000000
VERSION     NZ_JBRREP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029954
            Assembly: GCF_056760335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3948031)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3948031)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREP000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRREP000000000.  This version of the
            project (01) has the accession number NZ_JBRREP010000000, and
            consists of sequences JBRREP010000001-JBRREP010000065.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760335.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:29:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,532
            CDSs (total)                      :: 3,458
            Genes (coding)                    :: 3,425
            CDSs (with protein)               :: 3,425
            Genes (RNA)                       :: 74
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 6 of 33
            Pseudo Genes (incomplete)         :: 25 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 3 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3948031
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN012"
                     /isolation_source="lake"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREP010000001-JBRREP010000065
WGS_SCAFLD  NZ_JBRREP010000001-NZ_JBRREP010000065
//
LOCUS       NZ_JBRSAQ010000000   4482889 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN160, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAQ000000000
VERSION     NZ_JBRSAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030102
            Assembly: GCF_056757735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4482889)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4482889)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAQ000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAQ000000000.  This version of the
            project (01) has the accession number NZ_JBRSAQ010000000, and
            consists of sequences JBRSAQ010000001-JBRSAQ010000076.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757735.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:46:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,161
            CDSs (total)                      :: 4,075
            Genes (coding)                    :: 4,049
            CDSs (with protein)               :: 4,049
            Genes (RNA)                       :: 86
            rRNAs                             :: 6, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6, 3 (5S, 16S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 8 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4482889
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN160"
                     /isolation_source="Vegetable Farm"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAQ010000001-JBRSAQ010000076
WGS_SCAFLD  NZ_JBRSAQ010000001-NZ_JBRSAQ010000076
//
LOCUS       NZ_JBRSAU010000000   4780996 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN141, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAU000000000
VERSION     NZ_JBRSAU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030083
            Assembly: GCF_056758115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4780996)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4780996)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAU000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAU000000000.  This version of the
            project (01) has the accession number NZ_JBRSAU010000000, and
            consists of sequences JBRSAU010000001-JBRSAU010000131.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:09:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,434
            CDSs (total)                      :: 4,349
            Genes (coding)                    :: 4,311
            CDSs (with protein)               :: 4,311
            Genes (RNA)                       :: 85
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 14 of 38
            Pseudo Genes (incomplete)         :: 28 of 38
            Pseudo Genes (internal stop)      :: 5 of 38
            Pseudo Genes (multiple problems)  :: 8 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4780996
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN141"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAU010000001-JBRSAU010000131
WGS_SCAFLD  NZ_JBRSAU010000001-NZ_JBRSAU010000131
//
LOCUS       NZ_JBRSAE010000000   4588727 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN211, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAE000000000
VERSION     NZ_JBRSAE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030153
            Assembly: GCF_056756715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4588727)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4588727)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAE000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAE000000000.  This version of the
            project (01) has the accession number NZ_JBRSAE010000000, and
            consists of sequences JBRSAE010000001-JBRSAE010000114.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756715.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:49:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,240
            CDSs (total)                      :: 4,158
            Genes (coding)                    :: 4,122
            CDSs (with protein)               :: 4,122
            Genes (RNA)                       :: 82
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 11 of 36
            Pseudo Genes (incomplete)         :: 26 of 36
            Pseudo Genes (internal stop)      :: 4 of 36
            Pseudo Genes (multiple problems)  :: 5 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4588727
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN211"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAE010000001-JBRSAE010000114
WGS_SCAFLD  NZ_JBRSAE010000001-NZ_JBRSAE010000114
//
LOCUS       NZ_JBRSBP010000000   3982489 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lacuserhaii strain STEN061, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBP000000000
VERSION     NZ_JBRSBP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030003
            Assembly: GCF_056759535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lacuserhaii
  ORGANISM  Stenotrophomonas lacuserhaii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3982489)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3982489)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBP000000000.1.
            The Stenotrophomonas lacuserhaii whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBP000000000.  This version of the
            project (01) has the accession number NZ_JBRSBP010000000, and
            consists of sequences JBRSBP010000001-JBRSBP010000092.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759535.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,628
            CDSs (total)                      :: 3,553
            Genes (coding)                    :: 3,507
            CDSs (with protein)               :: 3,507
            Genes (RNA)                       :: 75
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 12 of 46
            Pseudo Genes (incomplete)         :: 39 of 46
            Pseudo Genes (internal stop)      :: 1 of 46
            Pseudo Genes (multiple problems)  :: 6 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3982489
                     /organism="Stenotrophomonas lacuserhaii"
                     /mol_type="genomic DNA"
                     /strain="STEN061"
                     /isolation_source="River"
                     /db_xref="taxon:2760084"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBP010000001-JBRSBP010000092
WGS_SCAFLD  NZ_JBRSBP010000001-NZ_JBRSBP010000092
//
LOCUS       NZ_JBRRDB010000000   4225978 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN070, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDB000000000
VERSION     NZ_JBRRDB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030012
            Assembly: GCF_056759395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4225978)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4225978)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDB000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDB000000000.  This version of the
            project (01) has the accession number NZ_JBRRDB010000000, and
            consists of sequences JBRRDB010000001-JBRRDB010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759395.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:26:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,804
            CDSs (total)                      :: 3,727
            Genes (coding)                    :: 3,706
            CDSs (with protein)               :: 3,706
            Genes (RNA)                       :: 77
            rRNAs                             :: 6, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 2 (5S, 16S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 2 of 21
            Pseudo Genes (incomplete)         :: 21 of 21
            Pseudo Genes (internal stop)      :: 0 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225978
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN070"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDB010000001-JBRRDB010000046
WGS_SCAFLD  NZ_JBRRDB010000001-NZ_JBRRDB010000046
//
LOCUS       NZ_JBRRBN010000000   4713830 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lactitubi strain STEN241, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBN000000000
VERSION     NZ_JBRRBN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030183
            Assembly: GCF_056756155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lactitubi
  ORGANISM  Stenotrophomonas lactitubi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4713830)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4713830)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBN000000000.1.
            The Stenotrophomonas lactitubi whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBN000000000.  This version of the
            project (01) has the accession number NZ_JBRRBN010000000, and
            consists of sequences JBRRBN010000001-JBRRBN010000157.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:38:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,365
            CDSs (total)                      :: 4,292
            Genes (coding)                    :: 4,241
            CDSs (with protein)               :: 4,241
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 13 of 51
            Pseudo Genes (incomplete)         :: 43 of 51
            Pseudo Genes (internal stop)      :: 5 of 51
            Pseudo Genes (multiple problems)  :: 8 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4713830
                     /organism="Stenotrophomonas lactitubi"
                     /mol_type="genomic DNA"
                     /strain="STEN241"
                     /isolation_source="River"
                     /db_xref="taxon:2045214"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBN010000001-JBRRBN010000157
WGS_SCAFLD  NZ_JBRRBN010000001-NZ_JBRRBN010000157
//
LOCUS       NZ_JBRSAO010000000   4520456 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas geniculata strain STEN176, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAO000000000
VERSION     NZ_JBRSAO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030118
            Assembly: GCF_056757395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas geniculata
  ORGANISM  Stenotrophomonas geniculata
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4520456)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4520456)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAO000000000.1.
            The Stenotrophomonas geniculata whole genome shotgun (WGS) project
            has the project accession NZ_JBRSAO000000000.  This version of the
            project (01) has the accession number NZ_JBRSAO010000000, and
            consists of sequences JBRSAO010000001-JBRSAO010000079.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757395.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:46:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,152
            CDSs (total)                      :: 4,075
            Genes (coding)                    :: 4,043
            CDSs (with protein)               :: 4,043
            Genes (RNA)                       :: 77
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 11 of 32
            Pseudo Genes (incomplete)         :: 21 of 32
            Pseudo Genes (internal stop)      :: 3 of 32
            Pseudo Genes (multiple problems)  :: 3 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4520456
                     /organism="Stenotrophomonas geniculata"
                     /mol_type="genomic DNA"
                     /strain="STEN176"
                     /isolation_source="Vegetable Farm"
                     /db_xref="taxon:86188"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAO010000001-JBRSAO010000079
WGS_SCAFLD  NZ_JBRSAO010000001-NZ_JBRSAO010000079
//
LOCUS       NZ_JBRRDA010000000   4218403 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN071, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDA000000000
VERSION     NZ_JBRRDA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030013
            Assembly: GCF_056759375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4218403)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4218403)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDA000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDA000000000.  This version of the
            project (01) has the accession number NZ_JBRRDA010000000, and
            consists of sequences JBRRDA010000001-JBRRDA010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:22:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,812
            CDSs (total)                      :: 3,745
            Genes (coding)                    :: 3,719
            CDSs (with protein)               :: 3,719
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 4 of 26
            Pseudo Genes (incomplete)         :: 25 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            Pseudo Genes (multiple problems)  :: 4 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4218403
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN071"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDA010000001-JBRRDA010000036
WGS_SCAFLD  NZ_JBRRDA010000001-NZ_JBRRDA010000036
//
LOCUS       NZ_JBRSAP010000000   4480664 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN175, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAP000000000
VERSION     NZ_JBRSAP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030117
            Assembly: GCF_056757475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4480664)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4480664)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAP000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAP000000000.  This version of the
            project (01) has the accession number NZ_JBRSAP010000000, and
            consists of sequences JBRSAP010000001-JBRSAP010000118.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:45:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,164
            CDSs (total)                      :: 4,080
            Genes (coding)                    :: 4,050
            CDSs (with protein)               :: 4,050
            Genes (RNA)                       :: 84
            rRNAs                             :: 4, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 3 (5S, 16S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 8 of 30
            Pseudo Genes (incomplete)         :: 21 of 30
            Pseudo Genes (internal stop)      :: 4 of 30
            Pseudo Genes (multiple problems)  :: 3 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480664
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN175"
                     /isolation_source="Vegetable Farm"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAP010000001-JBRSAP010000118
WGS_SCAFLD  NZ_JBRSAP010000001-NZ_JBRSAP010000118
//
LOCUS       NZ_JBRSBW010000000   4478217 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN004, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBW000000000
VERSION     NZ_JBRSBW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029946
            Assembly: GCF_056760495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4478217)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4478217)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBW000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBW000000000.  This version of the
            project (01) has the accession number NZ_JBRSBW010000000, and
            consists of sequences JBRSBW010000001-JBRSBW010000226.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760495.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:33:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,129
            CDSs (total)                      :: 4,050
            Genes (coding)                    :: 4,012
            CDSs (with protein)               :: 4,012
            Genes (RNA)                       :: 79
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 10 of 38
            Pseudo Genes (incomplete)         :: 27 of 38
            Pseudo Genes (internal stop)      :: 4 of 38
            Pseudo Genes (multiple problems)  :: 3 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478217
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN004"
                     /isolation_source="lake"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBW010000001-JBRSBW010000226
WGS_SCAFLD  NZ_JBRSBW010000001-NZ_JBRSBW010000226
//
LOCUS       NZ_JBRSAI010000000   4468603 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN187, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAI000000000
VERSION     NZ_JBRSAI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030129
            Assembly: GCF_056757195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4468603)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4468603)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAI000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAI000000000.  This version of the
            project (01) has the accession number NZ_JBRSAI010000000, and
            consists of sequences JBRSAI010000001-JBRSAI010000119.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757195.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:39:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,133
            CDSs (total)                      :: 4,054
            Genes (coding)                    :: 4,021
            CDSs (with protein)               :: 4,021
            Genes (RNA)                       :: 79
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 11 of 33
            Pseudo Genes (incomplete)         :: 23 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 5 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4468603
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN187"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAI010000001-JBRSAI010000119
WGS_SCAFLD  NZ_JBRSAI010000001-NZ_JBRSAI010000119
//
LOCUS       NZ_JBRRDQ010000000   4489511 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN047, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDQ000000000
VERSION     NZ_JBRRDQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029989
            Assembly: GCF_056759735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4489511)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4489511)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDQ000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDQ000000000.  This version of the
            project (01) has the accession number NZ_JBRRDQ010000000, and
            consists of sequences JBRRDQ010000001-JBRRDQ010000146.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759735.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:15:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,136
            CDSs (total)                      :: 4,064
            Genes (coding)                    :: 4,013
            CDSs (with protein)               :: 4,013
            Genes (RNA)                       :: 72
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 8 of 51
            Pseudo Genes (incomplete)         :: 43 of 51
            Pseudo Genes (internal stop)      :: 10 of 51
            Pseudo Genes (multiple problems)  :: 9 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4489511
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN047"
                     /isolation_source="Wetland"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDQ010000001-JBRRDQ010000146
WGS_SCAFLD  NZ_JBRRDQ010000001-NZ_JBRRDQ010000146
//
LOCUS       NZ_JBRRDO010000000   4630100 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN051, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDO000000000
VERSION     NZ_JBRRDO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029993
            Assembly: GCF_056759715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4630100)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4630100)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDO000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDO000000000.  This version of the
            project (01) has the accession number NZ_JBRRDO010000000, and
            consists of sequences JBRRDO010000001-JBRRDO010000136.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759715.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:21:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,109
            CDSs (total)                      :: 4,034
            Genes (coding)                    :: 4,008
            CDSs (with protein)               :: 4,008
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 4 of 26
            Pseudo Genes (incomplete)         :: 19 of 26
            Pseudo Genes (internal stop)      :: 4 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4630100
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN051"
                     /isolation_source="Wetland"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDO010000001-JBRRDO010000136
WGS_SCAFLD  NZ_JBRRDO010000001-NZ_JBRRDO010000136
//
LOCUS       NZ_JBRSAF010000000   4671077 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN197, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAF000000000
VERSION     NZ_JBRSAF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030139
            Assembly: GCF_056756975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4671077)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4671077)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAF000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAF000000000.  This version of the
            project (01) has the accession number NZ_JBRSAF010000000, and
            consists of sequences JBRSAF010000001-JBRSAF010000120.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:34:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,293
            CDSs (total)                      :: 4,214
            Genes (coding)                    :: 4,184
            CDSs (with protein)               :: 4,184
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 10 of 30
            Pseudo Genes (incomplete)         :: 22 of 30
            Pseudo Genes (internal stop)      :: 5 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4671077
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN197"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAF010000001-JBRSAF010000120
WGS_SCAFLD  NZ_JBRSAF010000001-NZ_JBRSAF010000120
//
LOCUS       NZ_JBRRDX010000000   4432416 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN036, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDX000000000
VERSION     NZ_JBRRDX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029978
            Assembly: GCF_056759915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4432416)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4432416)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDX000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDX000000000.  This version of the
            project (01) has the accession number NZ_JBRRDX010000000, and
            consists of sequences JBRRDX010000001-JBRRDX010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759915.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:22:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,032
            CDSs (total)                      :: 3,962
            Genes (coding)                    :: 3,920
            CDSs (with protein)               :: 3,920
            Genes (RNA)                       :: 70
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 10 of 42
            Pseudo Genes (incomplete)         :: 34 of 42
            Pseudo Genes (internal stop)      :: 2 of 42
            Pseudo Genes (multiple problems)  :: 4 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4432416
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN036"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDX010000001-JBRRDX010000064
WGS_SCAFLD  NZ_JBRRDX010000001-NZ_JBRRDX010000064
//
LOCUS       NZ_JBRRDZ010000000   4384684 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN034, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDZ000000000
VERSION     NZ_JBRRDZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029976
            Assembly: GCF_056759955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4384684)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4384684)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDZ000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDZ000000000.  This version of the
            project (01) has the accession number NZ_JBRRDZ010000000, and
            consists of sequences JBRRDZ010000001-JBRRDZ010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759955.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,011
            CDSs (total)                      :: 3,939
            Genes (coding)                    :: 3,899
            CDSs (with protein)               :: 3,899
            Genes (RNA)                       :: 72
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 10 of 40
            Pseudo Genes (incomplete)         :: 31 of 40
            Pseudo Genes (internal stop)      :: 3 of 40
            Pseudo Genes (multiple problems)  :: 4 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4384684
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN034"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDZ010000001-JBRRDZ010000066
WGS_SCAFLD  NZ_JBRRDZ010000001-NZ_JBRRDZ010000066
//
LOCUS       NZ_JBRSBK010000000   3957829 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lacuserhaii strain STEN089, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBK000000000
VERSION     NZ_JBRSBK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030031
            Assembly: GCF_056759095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lacuserhaii
  ORGANISM  Stenotrophomonas lacuserhaii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3957829)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3957829)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBK000000000.1.
            The Stenotrophomonas lacuserhaii whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBK000000000.  This version of the
            project (01) has the accession number NZ_JBRSBK010000000, and
            consists of sequences JBRSBK010000001-JBRSBK010000093.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759095.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:21:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,580
            CDSs (total)                      :: 3,501
            Genes (coding)                    :: 3,463
            CDSs (with protein)               :: 3,463
            Genes (RNA)                       :: 79
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 10 of 38
            Pseudo Genes (incomplete)         :: 28 of 38
            Pseudo Genes (internal stop)      :: 6 of 38
            Pseudo Genes (multiple problems)  :: 6 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3957829
                     /organism="Stenotrophomonas lacuserhaii"
                     /mol_type="genomic DNA"
                     /strain="STEN089"
                     /isolation_source="River"
                     /db_xref="taxon:2760084"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBK010000001-JBRSBK010000093
WGS_SCAFLD  NZ_JBRSBK010000001-NZ_JBRSBK010000093
//
LOCUS       NZ_JBRRDT010000000   4494337 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN041, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDT000000000
VERSION     NZ_JBRRDT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029983
            Assembly: GCF_056759855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4494337)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4494337)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDT000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDT000000000.  This version of the
            project (01) has the accession number NZ_JBRRDT010000000, and
            consists of sequences JBRRDT010000001-JBRRDT010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759855.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:16:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,121
            CDSs (total)                      :: 4,048
            Genes (coding)                    :: 4,010
            CDSs (with protein)               :: 4,010
            Genes (RNA)                       :: 73
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 11 of 38
            Pseudo Genes (incomplete)         :: 29 of 38
            Pseudo Genes (internal stop)      :: 2 of 38
            Pseudo Genes (multiple problems)  :: 4 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4494337
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN041"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDT010000001-JBRRDT010000060
WGS_SCAFLD  NZ_JBRRDT010000001-NZ_JBRRDT010000060
//
LOCUS       NZ_JBRSAK010000000   4468879 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN185, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAK000000000
VERSION     NZ_JBRSAK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030127
            Assembly: GCF_056757225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4468879)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4468879)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAK000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAK000000000.  This version of the
            project (01) has the accession number NZ_JBRSAK010000000, and
            consists of sequences JBRSAK010000001-JBRSAK010000099.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757225.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:36:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,136
            CDSs (total)                      :: 4,058
            Genes (coding)                    :: 4,021
            CDSs (with protein)               :: 4,021
            Genes (RNA)                       :: 78
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 11 of 37
            Pseudo Genes (incomplete)         :: 27 of 37
            Pseudo Genes (internal stop)      :: 4 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4468879
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN185"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAK010000001-JBRSAK010000099
WGS_SCAFLD  NZ_JBRSAK010000001-NZ_JBRSAK010000099
//
LOCUS       NZ_JBRRCP010000000   4090866 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN090, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCP000000000
VERSION     NZ_JBRRCP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030032
            Assembly: GCF_056759075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4090866)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4090866)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCP000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCP000000000.  This version of the
            project (01) has the accession number NZ_JBRRCP010000000, and
            consists of sequences JBRRCP010000001-JBRRCP010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759075.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:20:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,669
            CDSs (total)                      :: 3,592
            Genes (coding)                    :: 3,565
            CDSs (with protein)               :: 3,565
            Genes (RNA)                       :: 77
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 9 of 27
            Pseudo Genes (incomplete)         :: 20 of 27
            Pseudo Genes (internal stop)      :: 2 of 27
            Pseudo Genes (multiple problems)  :: 4 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4090866
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN090"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCP010000001-JBRRCP010000060
WGS_SCAFLD  NZ_JBRRCP010000001-NZ_JBRRCP010000060
//
LOCUS       NZ_JBRSBN010000000   3915060 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lacuserhaii strain STEN072, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBN000000000
VERSION     NZ_JBRSBN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030014
            Assembly: GCF_056759355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lacuserhaii
  ORGANISM  Stenotrophomonas lacuserhaii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3915060)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3915060)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBN000000000.1.
            The Stenotrophomonas lacuserhaii whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBN000000000.  This version of the
            project (01) has the accession number NZ_JBRSBN010000000, and
            consists of sequences JBRSBN010000001-JBRSBN010000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759355.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,522
            CDSs (total)                      :: 3,452
            Genes (coding)                    :: 3,422
            CDSs (with protein)               :: 3,422
            Genes (RNA)                       :: 70
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 6 of 30
            Pseudo Genes (incomplete)         :: 20 of 30
            Pseudo Genes (internal stop)      :: 5 of 30
            Pseudo Genes (multiple problems)  :: 1 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3915060
                     /organism="Stenotrophomonas lacuserhaii"
                     /mol_type="genomic DNA"
                     /strain="STEN072"
                     /isolation_source="River"
                     /db_xref="taxon:2760084"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBN010000001-JBRSBN010000057
WGS_SCAFLD  NZ_JBRSBN010000001-NZ_JBRSBN010000057
//
LOCUS       NZ_JBRSAS010000000   4589330 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN153, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAS000000000
VERSION     NZ_JBRSAS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030095
            Assembly: GCF_056757835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4589330)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4589330)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAS000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAS000000000.  This version of the
            project (01) has the accession number NZ_JBRSAS010000000, and
            consists of sequences JBRSAS010000001-JBRSAS010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757835.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:54:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,237
            CDSs (total)                      :: 4,159
            Genes (coding)                    :: 4,114
            CDSs (with protein)               :: 4,114
            Genes (RNA)                       :: 78
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 10 of 45
            Pseudo Genes (incomplete)         :: 36 of 45
            Pseudo Genes (internal stop)      :: 4 of 45
            Pseudo Genes (multiple problems)  :: 5 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4589330
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN153"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAS010000001-JBRSAS010000117
WGS_SCAFLD  NZ_JBRSAS010000001-NZ_JBRSAS010000117
//
LOCUS       NZ_JBRRCV010000000   4601371 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas indicatrix strain STEN082, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCV000000000
VERSION     NZ_JBRRCV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030024
            Assembly: GCF_056759215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas indicatrix
  ORGANISM  Stenotrophomonas indicatrix
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4601371)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4601371)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCV000000000.1.
            The Stenotrophomonas indicatrix whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCV000000000.  This version of the
            project (01) has the accession number NZ_JBRRCV010000000, and
            consists of sequences JBRRCV010000001-JBRRCV010000207.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759215.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:18:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,217
            CDSs (total)                      :: 4,149
            Genes (coding)                    :: 4,104
            CDSs (with protein)               :: 4,104
            Genes (RNA)                       :: 68
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 10 of 45
            Pseudo Genes (incomplete)         :: 39 of 45
            Pseudo Genes (internal stop)      :: 2 of 45
            Pseudo Genes (multiple problems)  :: 5 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4601371
                     /organism="Stenotrophomonas indicatrix"
                     /mol_type="genomic DNA"
                     /strain="STEN082"
                     /isolation_source="River"
                     /db_xref="taxon:2045451"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCV010000001-JBRRCV010000207
WGS_SCAFLD  NZ_JBRRCV010000001-NZ_JBRRCV010000207
//
LOCUS       NZ_JBRRDG010000000   4498890 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN062, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDG000000000
VERSION     NZ_JBRRDG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030004
            Assembly: GCF_056759515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4498890)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4498890)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDG000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDG000000000.  This version of the
            project (01) has the accession number NZ_JBRRDG010000000, and
            consists of sequences JBRRDG010000001-JBRRDG010000131.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759515.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:24:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,046
            CDSs (total)                      :: 3,973
            Genes (coding)                    :: 3,943
            CDSs (with protein)               :: 3,943
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 1 (5S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 5 of 30
            Pseudo Genes (incomplete)         :: 27 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 5 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4498890
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN062"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDG010000001-JBRRDG010000131
WGS_SCAFLD  NZ_JBRRDG010000001-NZ_JBRRDG010000131
//
LOCUS       NZ_JBRRDP010000000   4237128 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN050, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDP000000000
VERSION     NZ_JBRRDP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029992
            Assembly: GCF_056759695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4237128)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4237128)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDP000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDP000000000.  This version of the
            project (01) has the accession number NZ_JBRRDP010000000, and
            consists of sequences JBRRDP010000001-JBRRDP010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759695.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:19:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,807
            CDSs (total)                      :: 3,736
            Genes (coding)                    :: 3,703
            CDSs (with protein)               :: 3,703
            Genes (RNA)                       :: 71
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 6 of 33
            Pseudo Genes (incomplete)         :: 28 of 33
            Pseudo Genes (internal stop)      :: 3 of 33
            Pseudo Genes (multiple problems)  :: 4 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4237128
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN050"
                     /isolation_source="Wetland"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDP010000001-JBRRDP010000088
WGS_SCAFLD  NZ_JBRRDP010000001-NZ_JBRRDP010000088
//
LOCUS       NZ_JBRSAN010000000   4478635 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAN000000000
VERSION     NZ_JBRSAN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030124
            Assembly: GCF_056757295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4478635)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4478635)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAN000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAN000000000.  This version of the
            project (01) has the accession number NZ_JBRSAN010000000, and
            consists of sequences JBRSAN010000001-JBRSAN010000128.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:38:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,144
            CDSs (total)                      :: 4,061
            Genes (coding)                    :: 4,030
            CDSs (with protein)               :: 4,030
            Genes (RNA)                       :: 83
            rRNAs                             :: 4, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3, 5 (5S, 16S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 12 of 31
            Pseudo Genes (incomplete)         :: 20 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478635
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN182"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAN010000001-JBRSAN010000128
WGS_SCAFLD  NZ_JBRSAN010000001-NZ_JBRSAN010000128
//
LOCUS       NZ_JBRRDE010000000   4062534 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas chelatiphaga strain STEN067, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDE000000000
VERSION     NZ_JBRRDE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030009
            Assembly: GCF_056759455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas chelatiphaga
  ORGANISM  Stenotrophomonas chelatiphaga
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4062534)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4062534)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDE000000000.1.
            The Stenotrophomonas chelatiphaga whole genome shotgun (WGS)
            project has the project accession NZ_JBRRDE000000000.  This version
            of the project (01) has the accession number NZ_JBRRDE010000000,
            and consists of sequences JBRRDE010000001-JBRRDE010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 26.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759455.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:20:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,628
            CDSs (total)                      :: 3,553
            Genes (coding)                    :: 3,523
            CDSs (with protein)               :: 3,523
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 6 of 30
            Pseudo Genes (incomplete)         :: 25 of 30
            Pseudo Genes (internal stop)      :: 2 of 30
            Pseudo Genes (multiple problems)  :: 2 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4062534
                     /organism="Stenotrophomonas chelatiphaga"
                     /mol_type="genomic DNA"
                     /strain="STEN067"
                     /isolation_source="Dam"
                     /db_xref="taxon:517011"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDE010000001-JBRRDE010000078
WGS_SCAFLD  NZ_JBRRDE010000001-NZ_JBRRDE010000078
//
LOCUS       NZ_JBRSBE010000000   4669522 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN121, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBE000000000
VERSION     NZ_JBRSBE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030063
            Assembly: GCF_056758475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4669522)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4669522)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBE000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBE000000000.  This version of the
            project (01) has the accession number NZ_JBRSBE010000000, and
            consists of sequences JBRSBE010000001-JBRSBE010000139.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:01:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,295
            CDSs (total)                      :: 4,218
            Genes (coding)                    :: 4,183
            CDSs (with protein)               :: 4,183
            Genes (RNA)                       :: 77
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 10 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 6 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4669522
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN121"
                     /isolation_source="Piggery"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBE010000001-JBRSBE010000139
WGS_SCAFLD  NZ_JBRSBE010000001-NZ_JBRSBE010000139
//
LOCUS       NZ_JBRRDC010000000   4168195 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN069, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDC000000000
VERSION     NZ_JBRRDC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030011
            Assembly: GCF_056759415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4168195)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4168195)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDC000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDC000000000.  This version of the
            project (01) has the accession number NZ_JBRRDC010000000, and
            consists of sequences JBRRDC010000001-JBRRDC010000076.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 7.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:25:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,781
            CDSs (total)                      :: 3,710
            Genes (coding)                    :: 3,679
            CDSs (with protein)               :: 3,679
            Genes (RNA)                       :: 71
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 7 of 31
            Pseudo Genes (incomplete)         :: 22 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 3 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4168195
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN069"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDC010000001-JBRRDC010000076
WGS_SCAFLD  NZ_JBRRDC010000001-NZ_JBRRDC010000076
//
LOCUS       NZ_JBRSBM010000000   3907088 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas lacuserhaii strain STEN076, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBM000000000
VERSION     NZ_JBRSBM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030018
            Assembly: GCF_056759315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas lacuserhaii
  ORGANISM  Stenotrophomonas lacuserhaii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3907088)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3907088)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBM000000000.1.
            The Stenotrophomonas lacuserhaii whole genome shotgun (WGS) project
            has the project accession NZ_JBRSBM000000000.  This version of the
            project (01) has the accession number NZ_JBRSBM010000000, and
            consists of sequences JBRSBM010000001-JBRSBM010000067.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759315.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:14:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,515
            CDSs (total)                      :: 3,441
            Genes (coding)                    :: 3,411
            CDSs (with protein)               :: 3,411
            Genes (RNA)                       :: 74
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 9 of 30
            Pseudo Genes (incomplete)         :: 24 of 30
            Pseudo Genes (internal stop)      :: 3 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3907088
                     /organism="Stenotrophomonas lacuserhaii"
                     /mol_type="genomic DNA"
                     /strain="STEN076"
                     /isolation_source="River"
                     /db_xref="taxon:2760084"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBM010000001-JBRSBM010000067
WGS_SCAFLD  NZ_JBRSBM010000001-NZ_JBRSBM010000067
//
LOCUS       NZ_JBRRDK010000000   4634997 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN057, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRDK000000000
VERSION     NZ_JBRRDK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029999
            Assembly: GCF_056759595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4634997)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4634997)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDK000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDK000000000.  This version of the
            project (01) has the accession number NZ_JBRRDK010000000, and
            consists of sequences JBRRDK010000001-JBRRDK010000079.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759595.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:25:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,162
            CDSs (total)                      :: 4,090
            Genes (coding)                    :: 4,067
            CDSs (with protein)               :: 4,067
            Genes (RNA)                       :: 72
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 4 of 23
            Pseudo Genes (incomplete)         :: 20 of 23
            Pseudo Genes (internal stop)      :: 2 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4634997
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN057"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDK010000001-JBRRDK010000079
WGS_SCAFLD  NZ_JBRRDK010000001-NZ_JBRRDK010000079
//
LOCUS       NZ_JBRRCT010000000   4223607 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas chelatiphaga strain STEN084, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCT000000000
VERSION     NZ_JBRRCT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030026
            Assembly: GCF_056759175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas chelatiphaga
  ORGANISM  Stenotrophomonas chelatiphaga
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4223607)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4223607)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCT000000000.1.
            The Stenotrophomonas chelatiphaga whole genome shotgun (WGS)
            project has the project accession NZ_JBRRCT000000000.  This version
            of the project (01) has the accession number NZ_JBRRCT010000000,
            and consists of sequences JBRRCT010000001-JBRRCT010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:16:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,832
            CDSs (total)                      :: 3,763
            Genes (coding)                    :: 3,727
            CDSs (with protein)               :: 3,727
            Genes (RNA)                       :: 69
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 6 of 36
            Pseudo Genes (incomplete)         :: 29 of 36
            Pseudo Genes (internal stop)      :: 1 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4223607
                     /organism="Stenotrophomonas chelatiphaga"
                     /mol_type="genomic DNA"
                     /strain="STEN084"
                     /isolation_source="River"
                     /db_xref="taxon:517011"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCT010000001-JBRRCT010000088
WGS_SCAFLD  NZ_JBRRCT010000001-NZ_JBRRCT010000088
//
LOCUS       NZ_JBRSBB010000000   4668072 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN124, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBB000000000
VERSION     NZ_JBRSBB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030066
            Assembly: GCF_056758415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4668072)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4668072)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBB000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBB000000000.  This version of the
            project (01) has the accession number NZ_JBRSBB010000000, and
            consists of sequences JBRSBB010000001-JBRSBB010000118.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:06:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,300
            CDSs (total)                      :: 4,220
            Genes (coding)                    :: 4,190
            CDSs (with protein)               :: 4,190
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 10 of 30
            Pseudo Genes (incomplete)         :: 21 of 30
            Pseudo Genes (internal stop)      :: 6 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4668072
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN124"
                     /isolation_source="hospital"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBB010000001-JBRSBB010000118
WGS_SCAFLD  NZ_JBRSBB010000001-NZ_JBRSBB010000118
//
LOCUS       NZ_JBRSBU010000000   4907579 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN024, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBU000000000
VERSION     NZ_JBRSBU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029966
            Assembly: GCF_056760115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4907579)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4907579)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBU000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBU000000000.  This version of the
            project (01) has the accession number NZ_JBRSBU010000000, and
            consists of sequences JBRSBU010000001-JBRSBU010000280.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,572
            CDSs (total)                      :: 4,495
            Genes (coding)                    :: 4,437
            CDSs (with protein)               :: 4,437
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 19 of 58
            Pseudo Genes (incomplete)         :: 40 of 58
            Pseudo Genes (internal stop)      :: 6 of 58
            Pseudo Genes (multiple problems)  :: 6 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4907579
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN024"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBU010000001-JBRSBU010000280
WGS_SCAFLD  NZ_JBRSBU010000001-NZ_JBRSBU010000280
//
LOCUS       NZ_JBRSBT010000000   4880839 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN027, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBT000000000
VERSION     NZ_JBRSBT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029969
            Assembly: GCF_056760055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4880839)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4880839)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBT000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBT000000000.  This version of the
            project (01) has the accession number NZ_JBRSBT010000000, and
            consists of sequences JBRSBT010000001-JBRSBT010000237.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760055.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:25:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,596
            CDSs (total)                      :: 4,510
            Genes (coding)                    :: 4,461
            CDSs (with protein)               :: 4,461
            Genes (RNA)                       :: 86
            rRNAs                             :: 6, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 5, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 18 of 49
            Pseudo Genes (incomplete)         :: 32 of 49
            Pseudo Genes (internal stop)      :: 4 of 49
            Pseudo Genes (multiple problems)  :: 4 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880839
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN027"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRSBT010000001-JBRSBT010000237
WGS_SCAFLD  NZ_JBRSBT010000001-NZ_JBRSBT010000237
//
LOCUS       NZ_JBRSBC010000000   4591063 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN123, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSBC000000000
VERSION     NZ_JBRSBC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030065
            Assembly: GCF_056758435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4591063)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4591063)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSBC000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSBC000000000.  This version of the
            project (01) has the accession number NZ_JBRSBC010000000, and
            consists of sequences JBRSBC010000001-JBRSBC010000118.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758435.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:14:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,240
            CDSs (total)                      :: 4,159
            Genes (coding)                    :: 4,119
            CDSs (with protein)               :: 4,119
            Genes (RNA)                       :: 81
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 12 of 40
            Pseudo Genes (incomplete)         :: 29 of 40
            Pseudo Genes (internal stop)      :: 4 of 40
            Pseudo Genes (multiple problems)  :: 5 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4591063
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN123"
                     /isolation_source="dairy"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSBC010000001-JBRSBC010000118
WGS_SCAFLD  NZ_JBRSBC010000001-NZ_JBRSBC010000118
//
LOCUS       NZ_JBRSAX010000000   4672770 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas muris strain STEN129, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRSAX000000000
VERSION     NZ_JBRSAX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030071
            Assembly: GCF_056758315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas muris
  ORGANISM  Stenotrophomonas muris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4672770)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4672770)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRSAX000000000.1.
            The Stenotrophomonas muris whole genome shotgun (WGS) project has
            the project accession NZ_JBRSAX000000000.  This version of the
            project (01) has the accession number NZ_JBRSAX010000000, and
            consists of sequences JBRSAX010000001-JBRSAX010000124.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056758315.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:12:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,296
            CDSs (total)                      :: 4,218
            Genes (coding)                    :: 4,187
            CDSs (with protein)               :: 4,187
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 11 of 31
            Pseudo Genes (incomplete)         :: 22 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 6 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4672770
                     /organism="Stenotrophomonas muris"
                     /mol_type="genomic DNA"
                     /strain="STEN129"
                     /isolation_source="Beach"
                     /db_xref="taxon:2963283"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRSAX010000001-JBRSAX010000124
WGS_SCAFLD  NZ_JBRSAX010000001-NZ_JBRSAX010000124
//
LOCUS       NZ_JBRRBS010000000   3926033 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas chelatiphaga strain STEN231, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBS000000000
VERSION     NZ_JBRRBS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030173
            Assembly: GCF_056756375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas chelatiphaga
  ORGANISM  Stenotrophomonas chelatiphaga
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3926033)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3926033)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBS000000000.1.
            The Stenotrophomonas chelatiphaga whole genome shotgun (WGS)
            project has the project accession NZ_JBRRBS000000000.  This version
            of the project (01) has the accession number NZ_JBRRBS010000000,
            and consists of sequences JBRRBS010000001-JBRRBS010000091.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 23.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756375.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:35:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,504
            CDSs (total)                      :: 3,431
            Genes (coding)                    :: 3,397
            CDSs (with protein)               :: 3,397
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 9 of 34
            Pseudo Genes (incomplete)         :: 25 of 34
            Pseudo Genes (internal stop)      :: 3 of 34
            Pseudo Genes (multiple problems)  :: 3 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3926033
                     /organism="Stenotrophomonas chelatiphaga"
                     /mol_type="genomic DNA"
                     /strain="STEN231"
                     /isolation_source="River"
                     /db_xref="taxon:517011"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBS010000001-JBRRBS010000091
WGS_SCAFLD  NZ_JBRRBS010000001-NZ_JBRRBS010000091
//
LOCUS       NZ_JBRRCS010000000   4170421 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN086, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCS000000000
VERSION     NZ_JBRRCS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030028
            Assembly: GCF_056759155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4170421)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4170421)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCS000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCS000000000.  This version of the
            project (01) has the accession number NZ_JBRRCS010000000, and
            consists of sequences JBRRCS010000001-JBRRCS010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:13:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,715
            CDSs (total)                      :: 3,640
            Genes (coding)                    :: 3,614
            CDSs (with protein)               :: 3,614
            Genes (RNA)                       :: 75
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 2 of 26
            Pseudo Genes (incomplete)         :: 23 of 26
            Pseudo Genes (internal stop)      :: 3 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4170421
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN086"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCS010000001-JBRRCS010000074
WGS_SCAFLD  NZ_JBRRCS010000001-NZ_JBRRCS010000074
//
LOCUS       NZ_JBRRET010000000   4117194 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN008, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRET000000000
VERSION     NZ_JBRRET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029950
            Assembly: GCF_056760435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN008
  ORGANISM  Stenotrophomonas sp. STEN008
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4117194)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4117194)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRET000000000.1.
            The Stenotrophomonas sp. STEN008 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRET000000000.  This version of the
            project (01) has the accession number NZ_JBRRET010000000, and
            consists of sequences JBRRET010000001-JBRRET010000097.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760435.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:31:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,742
            CDSs (total)                      :: 3,660
            Genes (coding)                    :: 3,634
            CDSs (with protein)               :: 3,634
            Genes (RNA)                       :: 82
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 20 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117194
                     /organism="Stenotrophomonas sp. STEN008"
                     /mol_type="genomic DNA"
                     /strain="STEN008"
                     /isolation_source="lake"
                     /db_xref="taxon:3466885"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRET010000001-JBRRET010000097
WGS_SCAFLD  NZ_JBRRET010000001-NZ_JBRRET010000097
//
LOCUS       NZ_JBNDHU010000000   4445347 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain MSU4C, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNDHU000000000
VERSION     NZ_JBNDHU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941065
            Assembly: GCF_056755155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4445347)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4445347)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNDHU000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBNDHU000000000.  This version of the
            project (01) has the accession number NZ_JBNDHU010000000, and
            consists of sequences JBNDHU010000001-JBNDHU010000779.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 264x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:30:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,378
            CDSs (total)                      :: 4,294
            Genes (coding)                    :: 4,103
            CDSs (with protein)               :: 4,103
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 6 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 191
            CDSs (without protein)            :: 191
            Pseudo Genes (ambiguous residues) :: 0 of 191
            Pseudo Genes (frameshifted)       :: 4 of 191
            Pseudo Genes (incomplete)         :: 182 of 191
            Pseudo Genes (internal stop)      :: 8 of 191
            Pseudo Genes (multiple problems)  :: 3 of 191
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4445347
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="MSU4C"
                     /db_xref="taxon:216778"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2021-10-01"
WGS         JBNDHU010000001-JBNDHU010000779
WGS_SCAFLD  NZ_JBNDHU010000001-NZ_JBNDHU010000779
//
LOCUS       NZ_JBRREG010000000   4723166 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN022, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREG000000000
VERSION     NZ_JBRREG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029964
            Assembly: GCF_056760155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN022
  ORGANISM  Stenotrophomonas sp. STEN022
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4723166)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4723166)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREG000000000.1.
            The Stenotrophomonas sp. STEN022 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREG000000000.  This version of the
            project (01) has the accession number NZ_JBRREG010000000, and
            consists of sequences JBRREG010000001-JBRREG010000204.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760155.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:27:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,185
            CDSs (total)                      :: 4,116
            Genes (coding)                    :: 4,053
            CDSs (with protein)               :: 4,053
            Genes (RNA)                       :: 69
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 14 of 63
            Pseudo Genes (incomplete)         :: 44 of 63
            Pseudo Genes (internal stop)      :: 10 of 63
            Pseudo Genes (multiple problems)  :: 5 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4723166
                     /organism="Stenotrophomonas sp. STEN022"
                     /mol_type="genomic DNA"
                     /strain="STEN022"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466892"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREG010000001-JBRREG010000204
WGS_SCAFLD  NZ_JBRREG010000001-NZ_JBRREG010000204
//
LOCUS       NZ_JBRRDY010000000   4676781 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN035, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRDY000000000
VERSION     NZ_JBRRDY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029977
            Assembly: GCF_056759935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN035
  ORGANISM  Stenotrophomonas sp. STEN035
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4676781)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4676781)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDY000000000.1.
            The Stenotrophomonas sp. STEN035 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDY000000000.  This version of the
            project (01) has the accession number NZ_JBRRDY010000000, and
            consists of sequences JBRRDY010000001-JBRRDY010000098.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759935.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,124
            CDSs (total)                      :: 4,051
            Genes (coding)                    :: 3,989
            CDSs (with protein)               :: 3,989
            Genes (RNA)                       :: 73
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 17 of 62
            Pseudo Genes (incomplete)         :: 45 of 62
            Pseudo Genes (internal stop)      :: 7 of 62
            Pseudo Genes (multiple problems)  :: 7 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4676781
                     /organism="Stenotrophomonas sp. STEN035"
                     /mol_type="genomic DNA"
                     /strain="STEN035"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466899"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDY010000001-JBRRDY010000098
WGS_SCAFLD  NZ_JBRRDY010000001-NZ_JBRRDY010000098
//
LOCUS       NZ_JBRREI010000000   4946203 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN020, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREI000000000
VERSION     NZ_JBRREI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029962
            Assembly: GCF_056760195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN020
  ORGANISM  Stenotrophomonas sp. STEN020
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4946203)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4946203)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREI000000000.1.
            The Stenotrophomonas sp. STEN020 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREI000000000.  This version of the
            project (01) has the accession number NZ_JBRREI010000000, and
            consists of sequences JBRREI010000001-JBRREI010000132.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760195.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:22:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,465
            CDSs (total)                      :: 4,392
            Genes (coding)                    :: 4,335
            CDSs (with protein)               :: 4,335
            Genes (RNA)                       :: 73
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 12 of 58
            Pseudo Genes (incomplete)         :: 48 of 58
            Pseudo Genes (internal stop)      :: 3 of 58
            Pseudo Genes (multiple problems)  :: 6 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4946203
                     /organism="Stenotrophomonas sp. STEN020"
                     /mol_type="genomic DNA"
                     /strain="STEN020"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466890"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREI010000001-JBRREI010000132
WGS_SCAFLD  NZ_JBRREI010000001-NZ_JBRREI010000132
//
LOCUS       NZ_JBRRCW010000000   4139323 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN081, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCW000000000
VERSION     NZ_JBRRCW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030023
            Assembly: GCF_056759235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4139323)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4139323)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCW000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCW000000000.  This version of the
            project (01) has the accession number NZ_JBRRCW010000000, and
            consists of sequences JBRRCW010000001-JBRRCW010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 7.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:21:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,765
            CDSs (total)                      :: 3,697
            Genes (coding)                    :: 3,670
            CDSs (with protein)               :: 3,670
            Genes (RNA)                       :: 68
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 5 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139323
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN081"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCW010000001-JBRRCW010000030
WGS_SCAFLD  NZ_JBRRCW010000001-NZ_JBRRCW010000030
//
LOCUS       NZ_JBRRCZ010000000   4267860 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN075, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCZ000000000
VERSION     NZ_JBRRCZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030017
            Assembly: GCF_056759335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4267860)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4267860)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCZ000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCZ000000000.  This version of the
            project (01) has the accession number NZ_JBRRCZ010000000, and
            consists of sequences JBRRCZ010000001-JBRRCZ010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 7.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759335.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:21:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,815
            CDSs (total)                      :: 3,750
            Genes (coding)                    :: 3,731
            CDSs (with protein)               :: 3,731
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 1 of 19
            Pseudo Genes (incomplete)         :: 17 of 19
            Pseudo Genes (internal stop)      :: 2 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4267860
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN075"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCZ010000001-JBRRCZ010000073
WGS_SCAFLD  NZ_JBRRCZ010000001-NZ_JBRRCZ010000073
//
LOCUS       NZ_JBRREN010000000   3348990 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN014, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREN000000000
VERSION     NZ_JBRREN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029956
            Assembly: GCF_056760315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN014
  ORGANISM  Stenotrophomonas sp. STEN014
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3348990)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3348990)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREN000000000.1.
            The Stenotrophomonas sp. STEN014 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREN000000000.  This version of the
            project (01) has the accession number NZ_JBRREN010000000, and
            consists of sequences JBRREN010000001-JBRREN010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760315.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:30:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,049
            CDSs (total)                      :: 2,979
            Genes (coding)                    :: 2,961
            CDSs (with protein)               :: 2,961
            Genes (RNA)                       :: 70
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 3 of 18
            Pseudo Genes (incomplete)         :: 16 of 18
            Pseudo Genes (internal stop)      :: 1 of 18
            Pseudo Genes (multiple problems)  :: 1 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3348990
                     /organism="Stenotrophomonas sp. STEN014"
                     /mol_type="genomic DNA"
                     /strain="STEN014"
                     /isolation_source="lake"
                     /db_xref="taxon:3466888"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREN010000001-JBRREN010000019
WGS_SCAFLD  NZ_JBRREN010000001-NZ_JBRREN010000019
//
LOCUS       NZ_JBRRCB010000000   4326226 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN193, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCB000000000
VERSION     NZ_JBRRCB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030135
            Assembly: GCF_056757075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4326226)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4326226)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCB000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCB000000000.  This version of the
            project (01) has the accession number NZ_JBRRCB010000000, and
            consists of sequences JBRRCB010000001-JBRRCB010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757075.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:40:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,911
            CDSs (total)                      :: 3,839
            Genes (coding)                    :: 3,814
            CDSs (with protein)               :: 3,814
            Genes (RNA)                       :: 72
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4326226
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN193"
                     /isolation_source="Vegetable Farm"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRRCB010000001-JBRRCB010000041
WGS_SCAFLD  NZ_JBRRCB010000001-NZ_JBRRCB010000041
//
LOCUS       NZ_JBRRES010000000   4131359 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN009, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRES000000000
VERSION     NZ_JBRRES000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029951
            Assembly: GCF_056760395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN009
  ORGANISM  Stenotrophomonas sp. STEN009
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4131359)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4131359)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRES000000000.1.
            The Stenotrophomonas sp. STEN009 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRES000000000.  This version of the
            project (01) has the accession number NZ_JBRRES010000000, and
            consists of sequences JBRRES010000001-JBRRES010000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760395.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:31:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,734
            CDSs (total)                      :: 3,653
            Genes (coding)                    :: 3,619
            CDSs (with protein)               :: 3,619
            Genes (RNA)                       :: 81
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 9 of 34
            Pseudo Genes (incomplete)         :: 24 of 34
            Pseudo Genes (internal stop)      :: 4 of 34
            Pseudo Genes (multiple problems)  :: 3 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4131359
                     /organism="Stenotrophomonas sp. STEN009"
                     /mol_type="genomic DNA"
                     /strain="STEN009"
                     /isolation_source="lake"
                     /db_xref="taxon:3466886"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRES010000001-JBRRES010000082
WGS_SCAFLD  NZ_JBRRES010000001-NZ_JBRRES010000082
//
LOCUS       NZ_JBRREA010000000   4966622 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN031, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREA000000000
VERSION     NZ_JBRREA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029973
            Assembly: GCF_056759975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN031
  ORGANISM  Stenotrophomonas sp. STEN031
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4966622)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4966622)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREA000000000.1.
            The Stenotrophomonas sp. STEN031 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREA000000000.  This version of the
            project (01) has the accession number NZ_JBRREA010000000, and
            consists of sequences JBRREA010000001-JBRREA010000134.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,492
            CDSs (total)                      :: 4,424
            Genes (coding)                    :: 4,360
            CDSs (with protein)               :: 4,360
            Genes (RNA)                       :: 68
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 17 of 64
            Pseudo Genes (incomplete)         :: 47 of 64
            Pseudo Genes (internal stop)      :: 9 of 64
            Pseudo Genes (multiple problems)  :: 8 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4966622
                     /organism="Stenotrophomonas sp. STEN031"
                     /mol_type="genomic DNA"
                     /strain="STEN031"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466897"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREA010000001-JBRREA010000134
WGS_SCAFLD  NZ_JBRREA010000001-NZ_JBRREA010000134
//
LOCUS       NZ_JBRREK010000000   4842267 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN018, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREK000000000
VERSION     NZ_JBRREK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029960
            Assembly: GCF_056760235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN018
  ORGANISM  Stenotrophomonas sp. STEN018
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4842267)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4842267)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREK000000000.1.
            The Stenotrophomonas sp. STEN018 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREK000000000.  This version of the
            project (01) has the accession number NZ_JBRREK010000000, and
            consists of sequences JBRREK010000001-JBRREK010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:30:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,228
            CDSs (total)                      :: 4,147
            Genes (coding)                    :: 4,100
            CDSs (with protein)               :: 4,100
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2 (5S, 16S)
            partial rRNAs                     :: 6, 4 (5S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 4 of 47
            Pseudo Genes (incomplete)         :: 41 of 47
            Pseudo Genes (internal stop)      :: 4 of 47
            Pseudo Genes (multiple problems)  :: 2 of 47
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4842267
                     /organism="Stenotrophomonas sp. STEN018"
                     /mol_type="genomic DNA"
                     /strain="STEN018"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466889"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREK010000001-JBRREK010000158
WGS_SCAFLD  NZ_JBRREK010000001-NZ_JBRREK010000158
//
LOCUS       NZ_JBRRBR010000000   4159916 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN232, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBR000000000
VERSION     NZ_JBRRBR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030174
            Assembly: GCF_056756315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4159916)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4159916)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBR000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBR000000000.  This version of the
            project (01) has the accession number NZ_JBRRBR010000000, and
            consists of sequences JBRRBR010000001-JBRRBR010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756315.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:38:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,720
            CDSs (total)                      :: 3,648
            Genes (coding)                    :: 3,621
            CDSs (with protein)               :: 3,621
            Genes (RNA)                       :: 72
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 8 of 27
            Pseudo Genes (incomplete)         :: 19 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            Pseudo Genes (multiple problems)  :: 3 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4159916
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN232"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBR010000001-JBRRBR010000048
WGS_SCAFLD  NZ_JBRRBR010000001-NZ_JBRRBR010000048
//
LOCUS       NZ_JBRREB010000000   4578886 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN030, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREB000000000
VERSION     NZ_JBRREB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029972
            Assembly: GCF_056759995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN030
  ORGANISM  Stenotrophomonas sp. STEN030
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4578886)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4578886)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREB000000000.1.
            The Stenotrophomonas sp. STEN030 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREB000000000.  This version of the
            project (01) has the accession number NZ_JBRREB010000000, and
            consists of sequences JBRREB010000001-JBRREB010000128.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759995.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,011
            CDSs (total)                      :: 3,937
            Genes (coding)                    :: 3,906
            CDSs (with protein)               :: 3,906
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 7 of 31
            Pseudo Genes (incomplete)         :: 27 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            Pseudo Genes (multiple problems)  :: 7 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578886
                     /organism="Stenotrophomonas sp. STEN030"
                     /mol_type="genomic DNA"
                     /strain="STEN030"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466896"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREB010000001-JBRREB010000128
WGS_SCAFLD  NZ_JBRREB010000001-NZ_JBRREB010000128
//
LOCUS       NZ_JBRRBQ010000000   4216225 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN234, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBQ000000000
VERSION     NZ_JBRRBQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030176
            Assembly: GCF_056756295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4216225)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4216225)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBQ000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBQ000000000.  This version of the
            project (01) has the accession number NZ_JBRRBQ010000000, and
            consists of sequences JBRRBQ010000001-JBRRBQ010000045.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:32:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,820
            CDSs (total)                      :: 3,748
            Genes (coding)                    :: 3,728
            CDSs (with protein)               :: 3,728
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 6 of 20
            Pseudo Genes (incomplete)         :: 14 of 20
            Pseudo Genes (internal stop)      :: 3 of 20
            Pseudo Genes (multiple problems)  :: 3 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4216225
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN234"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBQ010000001-JBRRBQ010000045
WGS_SCAFLD  NZ_JBRRBQ010000001-NZ_JBRRBQ010000045
//
LOCUS       NZ_JBRRED010000000   4852609 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN026, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRED000000000
VERSION     NZ_JBRRED000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029968
            Assembly: GCF_056760075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN026
  ORGANISM  Stenotrophomonas sp. STEN026
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4852609)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4852609)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRED000000000.1.
            The Stenotrophomonas sp. STEN026 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRED000000000.  This version of the
            project (01) has the accession number NZ_JBRRED010000000, and
            consists of sequences JBRRED010000001-JBRRED010000267.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760075.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:24:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,357
            CDSs (total)                      :: 4,288
            Genes (coding)                    :: 4,210
            CDSs (with protein)               :: 4,210
            Genes (RNA)                       :: 69
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 12 of 78
            Pseudo Genes (incomplete)         :: 63 of 78
            Pseudo Genes (internal stop)      :: 7 of 78
            Pseudo Genes (multiple problems)  :: 4 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852609
                     /organism="Stenotrophomonas sp. STEN026"
                     /mol_type="genomic DNA"
                     /strain="STEN026"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466894"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRED010000001-JBRRED010000267
WGS_SCAFLD  NZ_JBRRED010000001-NZ_JBRRED010000267
//
LOCUS       NZ_JBRRCX010000000   4297220 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN080, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCX000000000
VERSION     NZ_JBRRCX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030022
            Assembly: GCF_056759255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4297220)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4297220)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCX000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCX000000000.  This version of the
            project (01) has the accession number NZ_JBRRCX010000000, and
            consists of sequences JBRRCX010000001-JBRRCX010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:17:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,947
            CDSs (total)                      :: 3,874
            Genes (coding)                    :: 3,835
            CDSs (with protein)               :: 3,835
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 6 of 39
            Pseudo Genes (incomplete)         :: 32 of 39
            Pseudo Genes (internal stop)      :: 6 of 39
            Pseudo Genes (multiple problems)  :: 4 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4297220
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN080"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCX010000001-JBRRCX010000073
WGS_SCAFLD  NZ_JBRRCX010000001-NZ_JBRRCX010000073
//
LOCUS       NZ_JBRRAZ010000000   4213352 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN257, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRAZ000000000
VERSION     NZ_JBRRAZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030199
            Assembly: GCF_056755855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4213352)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4213352)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRAZ000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRAZ000000000.  This version of the
            project (01) has the accession number NZ_JBRRAZ010000000, and
            consists of sequences JBRRAZ010000001-JBRRAZ010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 27.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056755855.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:37:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,792
            CDSs (total)                      :: 3,715
            Genes (coding)                    :: 3,670
            CDSs (with protein)               :: 3,670
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 6 of 45
            Pseudo Genes (incomplete)         :: 38 of 45
            Pseudo Genes (internal stop)      :: 4 of 45
            Pseudo Genes (multiple problems)  :: 3 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4213352
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN257"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRAZ010000001-JBRRAZ010000070
WGS_SCAFLD  NZ_JBRRAZ010000001-NZ_JBRRAZ010000070
//
LOCUS       NZ_JBRRCY010000000   4211950 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN079, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRCY000000000
VERSION     NZ_JBRRCY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030021
            Assembly: GCF_056759275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4211950)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4211950)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCY000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCY000000000.  This version of the
            project (01) has the accession number NZ_JBRRCY010000000, and
            consists of sequences JBRRCY010000001-JBRRCY010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759275.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:21:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,788
            CDSs (total)                      :: 3,716
            Genes (coding)                    :: 3,687
            CDSs (with protein)               :: 3,687
            Genes (RNA)                       :: 72
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 4 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 5 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4211950
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN079"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCY010000001-JBRRCY010000063
WGS_SCAFLD  NZ_JBRRCY010000001-NZ_JBRRCY010000063
//
LOCUS       NZ_JBRRBT010000000   4198699 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas rhizophila strain STEN229, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBRRBT000000000
VERSION     NZ_JBRRBT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030171
            Assembly: GCF_056756395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas rhizophila
  ORGANISM  Stenotrophomonas rhizophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4198699)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4198699)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBT000000000.1.
            The Stenotrophomonas rhizophila whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBT000000000.  This version of the
            project (01) has the accession number NZ_JBRRBT010000000, and
            consists of sequences JBRRBT010000001-JBRRBT010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756395.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:38:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,772
            CDSs (total)                      :: 3,698
            Genes (coding)                    :: 3,670
            CDSs (with protein)               :: 3,670
            Genes (RNA)                       :: 74
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 4 of 28
            Pseudo Genes (incomplete)         :: 23 of 28
            Pseudo Genes (internal stop)      :: 3 of 28
            Pseudo Genes (multiple problems)  :: 2 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4198699
                     /organism="Stenotrophomonas rhizophila"
                     /mol_type="genomic DNA"
                     /strain="STEN229"
                     /isolation_source="River"
                     /db_xref="taxon:216778"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBT010000001-JBRRBT010000049
WGS_SCAFLD  NZ_JBRRBT010000001-NZ_JBRRBT010000049
//
LOCUS       NZ_JBRRDW010000000   4834909 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN038, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRDW000000000
VERSION     NZ_JBRRDW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029980
            Assembly: GCF_056759895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN038
  ORGANISM  Stenotrophomonas sp. STEN038
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4834909)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4834909)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDW000000000.1.
            The Stenotrophomonas sp. STEN038 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDW000000000.  This version of the
            project (01) has the accession number NZ_JBRRDW010000000, and
            consists of sequences JBRRDW010000001-JBRRDW010000127.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759895.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:27:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,313
            CDSs (total)                      :: 4,245
            Genes (coding)                    :: 4,204
            CDSs (with protein)               :: 4,204
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 5 of 41
            Pseudo Genes (incomplete)         :: 36 of 41
            Pseudo Genes (internal stop)      :: 2 of 41
            Pseudo Genes (multiple problems)  :: 1 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4834909
                     /organism="Stenotrophomonas sp. STEN038"
                     /mol_type="genomic DNA"
                     /strain="STEN038"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466900"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDW010000001-JBRRDW010000127
WGS_SCAFLD  NZ_JBRRDW010000001-NZ_JBRRDW010000127
//
LOCUS       NZ_JBRREH010000000   4586783 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN021, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREH000000000
VERSION     NZ_JBRREH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029963
            Assembly: GCF_056760175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN021
  ORGANISM  Stenotrophomonas sp. STEN021
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4586783)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4586783)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREH000000000.1.
            The Stenotrophomonas sp. STEN021 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREH000000000.  This version of the
            project (01) has the accession number NZ_JBRREH010000000, and
            consists of sequences JBRREH010000001-JBRREH010000191.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:22:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,086
            CDSs (total)                      :: 4,012
            Genes (coding)                    :: 3,951
            CDSs (with protein)               :: 3,951
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 20 of 61
            Pseudo Genes (incomplete)         :: 42 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 7 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4586783
                     /organism="Stenotrophomonas sp. STEN021"
                     /mol_type="genomic DNA"
                     /strain="STEN021"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466891"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREH010000001-JBRREH010000191
WGS_SCAFLD  NZ_JBRREH010000001-NZ_JBRREH010000191
//
LOCUS       NZ_JBRREO010000000   3382088 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN013, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREO000000000
VERSION     NZ_JBRREO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029955
            Assembly: GCF_056760355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN013
  ORGANISM  Stenotrophomonas sp. STEN013
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 3382088)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3382088)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREO000000000.1.
            The Stenotrophomonas sp. STEN013 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREO000000000.  This version of the
            project (01) has the accession number NZ_JBRREO010000000, and
            consists of sequences JBRREO010000001-JBRREO010000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 16.9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760355.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:25:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,083
            CDSs (total)                      :: 3,014
            Genes (coding)                    :: 2,985
            CDSs (with protein)               :: 2,985
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 26 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            Pseudo Genes (multiple problems)  :: 5 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3382088
                     /organism="Stenotrophomonas sp. STEN013"
                     /mol_type="genomic DNA"
                     /strain="STEN013"
                     /isolation_source="lake"
                     /db_xref="taxon:3466887"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREO010000001-JBRREO010000017
WGS_SCAFLD  NZ_JBRREO010000001-NZ_JBRREO010000017
//
LOCUS       NZ_JBRREW010000000   4135228 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN005, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREW000000000
VERSION     NZ_JBRREW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029947
            Assembly: GCF_056760515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN005
  ORGANISM  Stenotrophomonas sp. STEN005
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4135228)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4135228)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREW000000000.1.
            The Stenotrophomonas sp. STEN005 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREW000000000.  This version of the
            project (01) has the accession number NZ_JBRREW010000000, and
            consists of sequences JBRREW010000001-JBRREW010000101.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760515.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:28:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,734
            CDSs (total)                      :: 3,653
            Genes (coding)                    :: 3,628
            CDSs (with protein)               :: 3,628
            Genes (RNA)                       :: 81
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 7 of 25
            Pseudo Genes (incomplete)         :: 17 of 25
            Pseudo Genes (internal stop)      :: 4 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4135228
                     /organism="Stenotrophomonas sp. STEN005"
                     /mol_type="genomic DNA"
                     /strain="STEN005"
                     /isolation_source="lake"
                     /db_xref="taxon:3466884"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREW010000001-JBRREW010000101
WGS_SCAFLD  NZ_JBRREW010000001-NZ_JBRREW010000101
//
LOCUS       NZ_JBRREF010000000   5030849 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN023, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREF000000000
VERSION     NZ_JBRREF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029965
            Assembly: GCF_056760135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN023
  ORGANISM  Stenotrophomonas sp. STEN023
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 5030849)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5030849)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREF000000000.1.
            The Stenotrophomonas sp. STEN023 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREF000000000.  This version of the
            project (01) has the accession number NZ_JBRREF010000000, and
            consists of sequences JBRREF010000001-JBRREF010000180.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:32:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,442
            CDSs (total)                      :: 4,372
            Genes (coding)                    :: 4,325
            CDSs (with protein)               :: 4,325
            Genes (RNA)                       :: 70
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 8 of 47
            Pseudo Genes (incomplete)         :: 39 of 47
            Pseudo Genes (internal stop)      :: 5 of 47
            Pseudo Genes (multiple problems)  :: 4 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5030849
                     /organism="Stenotrophomonas sp. STEN023"
                     /mol_type="genomic DNA"
                     /strain="STEN023"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466893"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREF010000001-JBRREF010000180
WGS_SCAFLD  NZ_JBRREF010000001-NZ_JBRREF010000180
//
LOCUS       NZ_JVYP01000000      2034339 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus oralis strain 1212_SMIT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVYP00000000
VERSION     NZ_JVYP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197175
            Assembly: GCF_001070335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus oralis
  ORGANISM  Streptococcus oralis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2034339)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034339)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVYP00000000.1.
            The Streptococcus oralis whole genome shotgun (WGS) project has the
            project accession NZ_JVYP00000000.  This version of the project
            (01) has the accession number NZ_JVYP01000000, and consists of
            sequences JVYP01000001-JVYP01000079.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            The organism was changed from 'Streptococcus mitis' to
            'Streptococcus oralis' in July 2016.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_001070335.1
            Current Name        :: Streptococcus oralis
            Previous Name       :: Streptococcus mitis
            Date Updated        :: 2016-07-12
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_000148565.2
            A1 Name             :: Streptococcus oralis
            A1 ANI              :: 94.84332%
            A1 Query Coverage   :: 84%
            A1 Subject Coverage :: 90%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000148585.2
            A2 Name             :: Streptococcus mitis
            A2 ANI              :: 87.42077%
            A2 Query Coverage   :: 60%
            A2 Subject Coverage :: 66%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 19x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001070335.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:14:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,016
            CDSs (total)                      :: 1,979
            Genes (coding)                    :: 1,943
            CDSs (with protein)               :: 1,943
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 8 of 36
            Pseudo Genes (incomplete)         :: 27 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 3 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034339
                     /organism="Streptococcus oralis"
                     /mol_type="genomic DNA"
                     /strain="1212_SMIT"
                     /host="Homo sapiens"
                     /db_xref="taxon:1303"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVYP01000001-JVYP01000079
WGS_SCAFLD  NZ_JVYP01000001-NZ_JVYP01000079
//
LOCUS       NZ_JVUD01000000      1982721 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus oralis strain 1314_SORA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVUD00000000
VERSION     NZ_JVUD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197291
            Assembly: GCF_001069675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus oralis
  ORGANISM  Streptococcus oralis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1982721)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1982721)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVUD00000000.1.
            The Streptococcus oralis whole genome shotgun (WGS) project has the
            project accession NZ_JVUD00000000.  This version of the project
            (01) has the accession number NZ_JVUD01000000, and consists of
            sequences JVUD01000001-JVUD01000099.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 28x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001069675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:09:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,953
            CDSs (total)                      :: 1,907
            Genes (coding)                    :: 1,867
            CDSs (with protein)               :: 1,867
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 3, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 8 (16S, 23S)
            tRNAs                             :: 30
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 7 of 40
            Pseudo Genes (incomplete)         :: 32 of 40
            Pseudo Genes (internal stop)      :: 4 of 40
            Pseudo Genes (multiple problems)  :: 2 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1982721
                     /organism="Streptococcus oralis"
                     /mol_type="genomic DNA"
                     /strain="1314_SORA"
                     /host="Homo sapiens"
                     /db_xref="taxon:1303"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVUD01000001-JVUD01000099
WGS_SCAFLD  NZ_JVUD01000001-NZ_JVUD01000099
//
LOCUS       NZ_JVSR01000000      2267996 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain 139.rep2_SPAR, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JVSR00000000
VERSION     NZ_JVSR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197329
            Assembly: GCF_001069785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2267996)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267996)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVSR00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_JVSR00000000.  This version of the
            project (01) has the accession number NZ_JVSR01000000, and consists
            of sequences JVSR01000001-JVSR01000114.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 55x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001069785.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:16:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,239
            CDSs (total)                      :: 2,195
            Genes (coding)                    :: 2,152
            CDSs (with protein)               :: 2,152
            Genes (RNA)                       :: 44
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 6 of 43
            Pseudo Genes (incomplete)         :: 34 of 43
            Pseudo Genes (internal stop)      :: 4 of 43
            Pseudo Genes (multiple problems)  :: 1 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267996
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="139.rep2_SPAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVSR01000001-JVSR01000114
WGS_SCAFLD  NZ_JVSR01000001-NZ_JVSR01000114
//
LOCUS       NZ_AOCT02000000      2224950 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus iniae IUSA1, whole genome shotgun sequencing project.
ACCESSION   NZ_AOCT00000000
VERSION     NZ_AOCT00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02471473
            Assembly: GCF_000331915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus iniae IUSA1
  ORGANISM  Streptococcus iniae IUSA1
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2224950)
  AUTHORS   El Aamri,F., Acosta,F., Real,F. and Padilla,D.
  TITLE     Whole-Genome Sequence of the Fish Virulent Strain Streptococcus
            iniae IUSA-1, Isolated from Gilthead Sea Bream (Sparus aurata) and
            Red Porgy (Pagrus pagrus)
  JOURNAL   Genome Announc 1 (2), e0002513 (2013)
   PUBMED   23516181
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2224950)
  AUTHORS   El Aamri,F., Padilla,D., Real,F. and Acosta,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2013) Infectious Diseases and Ictiopathology,
            University Institute for Animal Health and Food Security,
            Trasmontana S/N, Arucas, Gran Canaria 35416, Spain
REFERENCE   3  (bases 1 to 2224950)
  AUTHORS   El Aamri,F., Acosta,F., Real,F. and Padilla,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2013) Infectious Diseases and Ictiopathology,
            University Institute for Animal Health and Food Security (IUSA),
            Trasmontana s/n, Arucas, Gran Canaria 35143, Spain
REFERENCE   4  (bases 1 to 2224950)
  AUTHORS   El Aamri,F., Padilla,D., Real,F. and Acosta,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JAN-2013) Infectious Diseases and Ictiopathology,
            University Institute for Animal Health and Food Security,
            Trasmontana S/N, Arucas, Gran Canaria 35416, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AOCT00000000.2.
            The Streptococcus iniae IUSA1 whole genome shotgun (WGS) project
            has the project accession NZ_AOCT00000000.  This version of the
            project (02) has the accession number NZ_AOCT02000000, and consists
            of sequences AOCT02000001-AOCT02000296.
            Bacteria and source DNA available from Infectious Diseases and
            Ictiopathology, University Institute for Animal Health and Food
            Security, Arucas, Gran Canaria 35416, Spain.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.6
            Genome Coverage       :: 27.3x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000331915.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:18:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,273
            CDSs (total)                      :: 2,231
            Genes (coding)                    :: 2,114
            CDSs (with protein)               :: 2,114
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 49 of 117
            Pseudo Genes (incomplete)         :: 72 of 117
            Pseudo Genes (internal stop)      :: 6 of 117
            Pseudo Genes (multiple problems)  :: 10 of 117
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224950
                     /organism="Streptococcus iniae IUSA1"
                     /mol_type="genomic DNA"
                     /strain="IUSA1"
                     /isolation_source="fish"
                     /host="Sparus aurata"
                     /db_xref="taxon:1273539"
                     /geo_loc_name="Spain: Gran Canaria"
                     /collection_date="2006-07"
                     /note="also isolated from Pagrus pagrus"
WGS         AOCT02000001-AOCT02000296
WGS_SCAFLD  NZ_AOCT02000001-NZ_AOCT02000296
//
LOCUS       NZ_JUQO01000000      2084604 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mitis strain 850_SMIT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUQO00000000
VERSION     NZ_JUQO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03198060
            Assembly: GCF_001074635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mitis
  ORGANISM  Streptococcus mitis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus mitis group.
REFERENCE   1  (bases 1 to 2084604)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084604)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUQO00000000.1.
            The Streptococcus mitis whole genome shotgun (WGS) project has the
            project accession NZ_JUQO00000000.  This version of the project
            (01) has the accession number NZ_JUQO01000000, and consists of
            sequences JUQO01000001-JUQO01000250.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 33x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001074635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:13:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,052
            CDSs (total)                      :: 2,018
            Genes (coding)                    :: 1,946
            CDSs (with protein)               :: 1,946
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 28
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 11 of 72
            Pseudo Genes (incomplete)         :: 64 of 72
            Pseudo Genes (internal stop)      :: 4 of 72
            Pseudo Genes (multiple problems)  :: 6 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084604
                     /organism="Streptococcus mitis"
                     /mol_type="genomic DNA"
                     /strain="850_SMIT"
                     /host="Homo sapiens"
                     /db_xref="taxon:28037"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUQO01000001-JUQO01000250
WGS_SCAFLD  NZ_JUQO01000001-NZ_JUQO01000250
//
LOCUS       NZ_CEVXYJ010000000   2177986 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Succinatimonas hippei isolate DRR127789_bin_5814, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVXYJ000000000
VERSION     NZ_CEVXYJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088164
            Sequence Read Archive: DRR127789
            Assembly: GCF_982401585.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Succinatimonas hippei (human gut metagenome)
  ORGANISM  Succinatimonas hippei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Succinivibrionaceae; Succinatimonas.
REFERENCE   1  (bases 1 to 2177986)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVXYJ000000000.1.
            The Succinatimonas hippei whole genome shotgun (WGS) project has
            the project accession NZ_CEVXYJ000000000.  This version of the
            project (01) has the accession number NZ_CEVXYJ010000000, and
            consists of sequences CEVXYJ010000001-CEVXYJ010000166.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR127789.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982401585.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 01:21:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,068
            CDSs (total)                      :: 2,022
            Genes (coding)                    :: 1,990
            CDSs (with protein)               :: 1,990
            Genes (RNA)                       :: 46
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 4 of 32
            Pseudo Genes (incomplete)         :: 25 of 32
            Pseudo Genes (internal stop)      :: 3 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177986
                     /organism="Succinatimonas hippei"
                     /mol_type="genomic DNA"
                     /isolate="DRR127789_bin_5814"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:626938"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVXYJ010000001-CEVXYJ010000166
WGS_SCAFLD  NZ_CEVXYJ010000001-NZ_CEVXYJ010000166
//
LOCUS       NZ_JVYC01000000      4585454 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stutzerimonas stutzeri strain 1223_PMEN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVYC00000000
VERSION     NZ_JVYC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197188
            Assembly: GCF_001062345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stutzerimonas stutzeri (Pseudomonas stutzeri)
  ORGANISM  Stutzerimonas stutzeri
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Stutzerimonas.
REFERENCE   1  (bases 1 to 4585454)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4585454)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVYC00000000.1.
            The Stutzerimonas stutzeri whole genome shotgun (WGS) project has
            the project accession NZ_JVYC00000000.  This version of the project
            (01) has the accession number NZ_JVYC01000000, and consists of
            sequences JVYC01000001-JVYC01000199.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            The organism was changed from 'Pseudomonas mendocina' to
            'Pseudomonas stutzeri' in July 2016.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_001062345.1
            Current Name        :: Pseudomonas stutzeri
            Previous Name       :: Pseudomonas mendocina
            Date Updated        :: 2016-07-12
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_000219605.1
            A1 Name             :: Pseudomonas stutzeri
            A1 ANI              :: 97.77304%
            A1 Query Coverage   :: 87%
            A1 Subject Coverage :: 88%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000813265.1
            A2 Name             :: Pseudomonas mendocina
            A2 ANI              :: 82.74357%
            A2 Query Coverage   :: 21%
            A2 Subject Coverage :: 19%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 33x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001062345.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:30:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,339
            CDSs (total)                      :: 4,290
            Genes (coding)                    :: 4,185
            CDSs (with protein)               :: 4,185
            Genes (RNA)                       :: 49
            rRNAs                             :: 4, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 36 of 105
            Pseudo Genes (incomplete)         :: 76 of 105
            Pseudo Genes (internal stop)      :: 4 of 105
            Pseudo Genes (multiple problems)  :: 10 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4585454
                     /organism="Stutzerimonas stutzeri"
                     /mol_type="genomic DNA"
                     /strain="1223_PMEN"
                     /host="Homo sapiens"
                     /db_xref="taxon:316"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVYC01000001-JVYC01000199
WGS_SCAFLD  NZ_JVYC01000001-NZ_JVYC01000199
//
LOCUS       NZ_JVCG01000000      1957426 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus anginosus strain 557_SANG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVCG00000000
VERSION     NZ_JVCG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197756
            Assembly: GCF_001076575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus anginosus
  ORGANISM  Streptococcus anginosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus anginosus group.
REFERENCE   1  (bases 1 to 1957426)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957426)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVCG00000000.1.
            The Streptococcus anginosus whole genome shotgun (WGS) project has
            the project accession NZ_JVCG00000000.  This version of the project
            (01) has the accession number NZ_JVCG01000000, and consists of
            sequences JVCG01000001-JVCG01000064.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 12x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001076575.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:21:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,973
            CDSs (total)                      :: 1,921
            Genes (coding)                    :: 1,830
            CDSs (with protein)               :: 1,830
            Genes (RNA)                       :: 52
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 4, 4 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 36 of 91
            Pseudo Genes (incomplete)         :: 43 of 91
            Pseudo Genes (internal stop)      :: 32 of 91
            Pseudo Genes (multiple problems)  :: 16 of 91
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957426
                     /organism="Streptococcus anginosus"
                     /mol_type="genomic DNA"
                     /strain="557_SANG"
                     /host="Homo sapiens"
                     /db_xref="taxon:1328"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVCG01000001-JVCG01000064
WGS_SCAFLD  NZ_JVCG01000001-NZ_JVCG01000064
//
LOCUS       NZ_JVVK01000000      2178809 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain 1287_SPAR, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVVK00000000
VERSION     NZ_JVVK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197258
            Assembly: GCF_001070445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2178809)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2178809)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVVK00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_JVVK00000000.  This version of the
            project (01) has the accession number NZ_JVVK01000000, and consists
            of sequences JVVK01000001-JVVK01000120.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 54x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001070445.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:13:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,135
            CDSs (total)                      :: 2,092
            Genes (coding)                    :: 2,010
            CDSs (with protein)               :: 2,010
            Genes (RNA)                       :: 43
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 3, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 30
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 27 of 82
            Pseudo Genes (incomplete)         :: 46 of 82
            Pseudo Genes (internal stop)      :: 19 of 82
            Pseudo Genes (multiple problems)  :: 8 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2178809
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="1287_SPAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVVK01000001-JVVK01000120
WGS_SCAFLD  NZ_JVVK01000001-NZ_JVVK01000120
//
LOCUS       NZ_JVNQ01000000      4637100 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stutzerimonas stutzeri strain 267_PSTU, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVNQ00000000
VERSION     NZ_JVNQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197460
            Assembly: GCF_001064225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stutzerimonas stutzeri (Pseudomonas stutzeri)
  ORGANISM  Stutzerimonas stutzeri
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Stutzerimonas.
REFERENCE   1  (bases 1 to 4637100)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4637100)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVNQ00000000.1.
            The Stutzerimonas stutzeri whole genome shotgun (WGS) project has
            the project accession NZ_JVNQ00000000.  This version of the project
            (01) has the accession number NZ_JVNQ01000000, and consists of
            sequences JVNQ01000001-JVNQ01000144.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 16x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001064225.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:41:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,422
            CDSs (total)                      :: 4,375
            Genes (coding)                    :: 4,251
            CDSs (with protein)               :: 4,251
            Genes (RNA)                       :: 47
            rRNAs                             :: 4, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 44 of 124
            Pseudo Genes (incomplete)         :: 85 of 124
            Pseudo Genes (internal stop)      :: 10 of 124
            Pseudo Genes (multiple problems)  :: 13 of 124
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4637100
                     /organism="Stutzerimonas stutzeri"
                     /mol_type="genomic DNA"
                     /strain="267_PSTU"
                     /host="Homo sapiens"
                     /db_xref="taxon:316"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVNQ01000001-JVNQ01000144
WGS_SCAFLD  NZ_JVNQ01000001-NZ_JVNQ01000144
//
LOCUS       NZ_PVST01000000      1850240 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus anginosus strain 11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PVST00000000
VERSION     NZ_PVST00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08611361
            Assembly: GCF_002999475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus anginosus
  ORGANISM  Streptococcus anginosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus anginosus group.
REFERENCE   1  (bases 1 to 1850240)
  AUTHORS   Fisher,L.E. and Russell,R.R.
  TITLE     The isolation and characterization of milleri group streptococci
            from dental periapical abscesses
  JOURNAL   J Dent Res 72 (8), 1191-1193 (1993)
   PUBMED   8360361
REFERENCE   2  (bases 1 to 1850240)
  AUTHORS   Merritt,J., Jakubovics,N., Macloskey,C., Archuleta,J., Fisher,L.E.,
            Raghavan,R. and Russell,R.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2018) Restorative Dentistry, Oregon Health and
            Science University, 3181 SW Sam Jackson Park Rd, Portland, OR
            97239, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVST00000000.1.
            The Streptococcus anginosus whole genome shotgun (WGS) project has
            the project accession NZ_PVST00000000.  This version of the project
            (01) has the accession number NZ_PVST01000000, and consists of
            sequences PVST01000001-PVST01000024.
            The strain and BioSample of this WGS project were corrected on
            March 26, 2018.
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2014
            Assembly Method        :: CLC Genomics Workbench v. 9
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 5785x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002999475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:50:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,852
            CDSs (total)                      :: 1,807
            Genes (coding)                    :: 1,731
            CDSs (with protein)               :: 1,731
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 34 of 76
            Pseudo Genes (incomplete)         :: 40 of 76
            Pseudo Genes (internal stop)      :: 28 of 76
            Pseudo Genes (multiple problems)  :: 24 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850240
                     /organism="Streptococcus anginosus"
                     /mol_type="genomic DNA"
                     /strain="11"
                     /isolation_source="pus from dental abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:1328"
                     /geo_loc_name="United Kingdom: Newcastle University"
                     /collection_date="2014-08-08"
                     /collected_by="Clinical Pathology Lab"
WGS         PVST01000001-PVST01000024
WGS_SCAFLD  NZ_PVST01000001-NZ_PVST01000024
//
LOCUS       NZ_LHAE01000000      2126933 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parauberis strain FSL S3-0563, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LHAE00000000
VERSION     NZ_LHAE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03856839
            Assembly: GCF_003409055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parauberis
  ORGANISM  Streptococcus parauberis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2126933)
  AUTHORS   Haines,A.N. and Council,K.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2015) Department of Biology, Norfolk State
            University, 115 Woods Science Bldg., Norfolk, VA 23504, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LHAE00000000.1.
            The Streptococcus parauberis whole genome shotgun (WGS) project has
            the project accession NZ_LHAE00000000.  This version of the project
            (01) has the accession number NZ_LHAE01000000, and consists of
            sequences LHAE01000001-LHAE01000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-JUL-2015
            Assembly Method        :: Celera Assembler v. 8.3rc2
            Expected Final Version :: yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003409055.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:30:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,166
            CDSs (total)                      :: 2,111
            Genes (coding)                    :: 2,063
            CDSs (with protein)               :: 2,063
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 17 of 48
            Pseudo Genes (incomplete)         :: 33 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 12 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126933
                     /organism="Streptococcus parauberis"
                     /mol_type="genomic DNA"
                     /strain="FSL S3-0563"
                     /isolation_source="bovine bulk tank milk"
                     /host="Bos taurus"
                     /db_xref="taxon:1348"
                     /geo_loc_name="USA: NY"
                     /collection_date="2001"
WGS         LHAE01000001-LHAE01000009
WGS_SCAFLD  NZ_LHAE01000001-NZ_LHAE01000009
//
LOCUS       NZ_JMGY01000000      8385015 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces rimosus strain R6-500MV9-R8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JMGY00000000
VERSION     NZ_JMGY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02730068
            Assembly: GCF_000707965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces rimosus
  ORGANISM  Streptomyces rimosus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces.
REFERENCE   1  (bases 1 to 8385015)
  AUTHORS   Baranasic,D., Zucko,J., Nair,M., Pain,A., Long,P.F., Hranueli,D.,
            Cullum,J. and Starcevic,A.
  TITLE     Genome Sequences of the Oxytetracycline Production Strain
            Streptomyces rimosus R6-500 and Two Mutants with Chromosomal
            Rearrangements
  JOURNAL   Genome Announc 2 (4), e00517-14 (2014)
   PUBMED   25035320
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8385015)
  AUTHORS   Baranasic,D., Zucko,J., Nair,M., Pain,A., Long,P.F., Hranueli,D.,
            Cullum,J. and Starcevic,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2014) LB Genetik, TU Kaiserslautern,
            Paul-Ehrlich-Str., Postfach 3049, Kaiserslautern 67653, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JMGY00000000.1.
            The Streptomyces rimosus whole genome shotgun (WGS) project has the
            project accession NZ_JMGY00000000.  This version of the project
            (01) has the accession number NZ_JMGY01000000, and consists of
            sequences JMGY01000001-JMGY01000375.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.09
            Assembly Name          :: rev-51
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 181.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000707965.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:22:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,661
            CDSs (total)                      :: 7,582
            Genes (coding)                    :: 7,178
            CDSs (with protein)               :: 7,178
            Genes (RNA)                       :: 79
            rRNAs                             :: 1, 4, 6 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 4, 6 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 404
            CDSs (without protein)            :: 404
            Pseudo Genes (ambiguous residues) :: 0 of 404
            Pseudo Genes (frameshifted)       :: 192 of 404
            Pseudo Genes (incomplete)         :: 217 of 404
            Pseudo Genes (internal stop)      :: 26 of 404
            Pseudo Genes (multiple problems)  :: 27 of 404
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8385015
                     /organism="Streptomyces rimosus"
                     /mol_type="genomic DNA"
                     /strain="R6-500MV9-R8"
                     /isolation_source="laboratory, from Streptomyces rimosus
                     R6-500MV9"
                     /db_xref="taxon:1927"
                     /geo_loc_name="Croatia: Zagreb"
                     /collection_date="2009"
WGS         JMGY01000001-JMGY01000375
WGS_SCAFLD  NZ_JMGY01000001-NZ_JMGY01000375
//
LOCUS       NZ_QXZZ01000000      2188752 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Veillonella atypica strain KHUD_V1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QXZZ00000000
VERSION     NZ_QXZZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09946802
            Assembly: GCF_003605975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Veillonella atypica
  ORGANISM  Veillonella atypica
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (bases 1 to 2188752)
  AUTHORS   Lee,J.-H., Moon,J.-H. and Shin,S.-Y.
  TITLE     Genome sequence of Veillonella atypica isolated from periodontal
            Korean patients
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2188752)
  AUTHORS   Lee,J.-H., Moon,J.-H. and Shin,S.-Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-SEP-2018) Department of Maxillofacial Biomedical
            Engineering, School of Dentistry, Kyung Hee University, 26
            Kyungheedae-ro, Dongdaemun-gu, Seoul 02447, Korea, Republic of
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXZZ00000000.1.
            The Veillonella atypica whole genome shotgun (WGS) project has the
            project accession NZ_QXZZ00000000.  This version of the project
            (01) has the accession number NZ_QXZZ01000000, and consists of
            sequences QXZZ01000001-QXZZ01000054.
            Bacteria and source DNA available from Department of Maxillofacial
            Biomedical Engineering, School of Dentistry, Kyung Hee University,
            Republic of Korea.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-AUG-2018
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1082.5x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003605975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:20:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,068
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 5 of 29
            Pseudo Genes (multiple problems)  :: 3 of 29
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2188752
                     /organism="Veillonella atypica"
                     /mol_type="genomic DNA"
                     /strain="KHUD_V1"
                     /isolation_source="subgingival plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:39777"
                     /geo_loc_name="South Korea: Seoul"
                     /lat_lon="37.59 N 127.05 E"
                     /collection_date="2018"
WGS         QXZZ01000001-QXZZ01000054
WGS_SCAFLD  NZ_QXZZ01000001-NZ_QXZZ01000054
//
LOCUS       NZ_QKYN01000000      8424182 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptacidiphilus pinicola strain MMS16-CNU450, whole genome
            shotgun sequencing project.
ACCESSION   NZ_QKYN00000000
VERSION     NZ_QKYN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09389194
            Assembly: GCF_003258295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptacidiphilus pinicola
  ORGANISM  Streptacidiphilus pinicola
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptacidiphilus.
REFERENCE   1  (bases 1 to 8424182)
  AUTHORS   Roh,S.G., Park,S., Kim,M.-K., Yun,B.-R., Park,J., Kim,M.J.,
            Kim,Y.S. and Kim,S.B.
  TITLE     Streptacidiphilus pinicola sp. nov., isolated from pine grove soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8424182)
  AUTHORS   Park,S. and Kim,S.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2018) Food Microbiology, Ministry of Food and
            Drug Safety, 187 Osongsaengmyeong-2-ro, Cheongju 28159, Republic of
            Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QKYN00000000.1.
            The Streptacidiphilus pinicola whole genome shotgun (WGS) project
            has the project accession NZ_QKYN00000000.  This version of the
            project (01) has the accession number NZ_QKYN01000000, and consists
            of sequences QKYN01000001-QKYN01000281.
            Bacteria and source DNA available from Seung Bum Kim.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomics Workbench v. 11
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 220.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003258295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:48:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,883
            CDSs (total)                      :: 7,804
            Genes (coding)                    :: 7,547
            CDSs (with protein)               :: 7,547
            Genes (RNA)                       :: 79
            rRNAs                             :: 3, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 4 (16S)
            tRNAs                             :: 68
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 257
            CDSs (without protein)            :: 257
            Pseudo Genes (ambiguous residues) :: 0 of 257
            Pseudo Genes (frameshifted)       :: 49 of 257
            Pseudo Genes (incomplete)         :: 228 of 257
            Pseudo Genes (internal stop)      :: 5 of 257
            Pseudo Genes (multiple problems)  :: 24 of 257
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8424182
                     /organism="Streptacidiphilus pinicola"
                     /mol_type="genomic DNA"
                     /strain="MMS16-CNU450"
                     /isolation_source="pine grove soil"
                     /type_material="type strain of Streptacidiphilus pinicola"
                     /db_xref="taxon:2219663"
                     /geo_loc_name="South Korea"
                     /collection_date="2017"
WGS         QKYN01000001-QKYN01000281
WGS_SCAFLD  NZ_QKYN01000001-NZ_QKYN01000281
//
LOCUS       NZ_PXZH01000000      2096134 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vagococcus humatus strain JCM 31581, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PXZH00000000
VERSION     NZ_PXZH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08717810
            Assembly: GCF_003950325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vagococcus humatus
  ORGANISM  Vagococcus humatus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Vagococcus.
REFERENCE   1  (bases 1 to 2096134)
  AUTHORS   Gulvik,C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2018) Bacterial Special Pathogens Branch, Centers
            for Disease Control, 1600 Clifton Road, Atlanta, GA 30329, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PXZH00000000.1.
            The Vagococcus humatus whole genome shotgun (WGS) project has the
            project accession NZ_PXZH00000000.  This version of the project
            (01) has the accession number NZ_PXZH01000000, and consists of
            sequences PXZH01000001-PXZH01000010.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2017
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 120.3x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003950325.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:47:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,056
            CDSs (total)                      :: 1,988
            Genes (coding)                    :: 1,969
            CDSs (with protein)               :: 1,969
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 4 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 6 of 19
            Pseudo Genes (multiple problems)  :: 2 of 19
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096134
                     /organism="Vagococcus humatus"
                     /mol_type="genomic DNA"
                     /strain="JCM 31581"
                     /isolation_source="soil beneath a decomposing pig carcass"
                     /type_material="type strain of Vagococcus humatus"
                     /db_xref="taxon:1889241"
                     /geo_loc_name="South Korea"
WGS         PXZH01000001-PXZH01000010
WGS_SCAFLD  NZ_PXZH01000001-NZ_PXZH01000010
//
LOCUS       NZ_WMYY01000000      1974723 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain BIOML-A12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMYY00000000
VERSION     NZ_WMYY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11946367
            Assembly: GCF_009717635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1974723)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 1974723)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMYY00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_WMYY00000000.  This version of the
            project (01) has the accession number NZ_WMYY01000000, and consists
            of sequences WMYY01000001-WMYY01000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 520.024x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009717635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:31:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,927
            CDSs (total)                      :: 1,868
            Genes (coding)                    :: 1,819
            CDSs (with protein)               :: 1,819
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 16 of 49
            Pseudo Genes (incomplete)         :: 34 of 49
            Pseudo Genes (internal stop)      :: 11 of 49
            Pseudo Genes (multiple problems)  :: 9 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974723
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A12"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-02-19"
WGS         WMYY01000001-WMYY01000029
WGS_SCAFLD  NZ_WMYY01000001-NZ_WMYY01000029
//
LOCUS       NZ_WMZG01000000      2005100 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain BIOML-A4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMZG00000000
VERSION     NZ_WMZG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11946359
            Assembly: GCF_009717805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2005100)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2005100)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMZG00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_WMZG00000000.  This version of the
            project (01) has the accession number NZ_WMZG01000000, and consists
            of sequences WMZG01000001-WMZG01000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 234.373x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009717805.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:30:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,959
            CDSs (total)                      :: 1,909
            Genes (coding)                    :: 1,857
            CDSs (with protein)               :: 1,857
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 18 of 52
            Pseudo Genes (incomplete)         :: 33 of 52
            Pseudo Genes (internal stop)      :: 15 of 52
            Pseudo Genes (multiple problems)  :: 10 of 52
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005100
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A4"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2015-12-09"
WGS         WMZG01000001-WMZG01000013
WGS_SCAFLD  NZ_WMZG01000001-NZ_WMZG01000013
//
LOCUS       NZ_SMFX01000000      2916325 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Thiogranum longum strain DSM 19610, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMFX00000000
VERSION     NZ_SMFX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09074859
            Assembly: GCF_004339085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thiogranum longum
  ORGANISM  Thiogranum longum
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Chromatiales; Ectothiorhodospiraceae; Thiogranum.
REFERENCE   1  (bases 1 to 2916325)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2916325)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMFX00000000.1.
            The Thiogranum longum whole genome shotgun (WGS) project has the
            project accession NZ_SMFX00000000.  This version of the project
            (01) has the accession number NZ_SMFX01000000, and consists of
            sequence SMFX01000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 393.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004339085.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:07:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,865
            CDSs (total)                      :: 2,814
            Genes (coding)                    :: 2,798
            CDSs (with protein)               :: 2,798
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 3 of 16
            Pseudo Genes (incomplete)         :: 12 of 16
            Pseudo Genes (internal stop)      :: 2 of 16
            Pseudo Genes (multiple problems)  :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2916325
                     /organism="Thiogranum longum"
                     /mol_type="genomic DNA"
                     /strain="DSM 19610"
                     /culture_collection="DSM:19610"
                     /type_material="type strain of Thiogranum longum"
                     /db_xref="taxon:1537524"
WGS         SMFX01000001
WGS_SCAFLD  NZ_SMFX01000001
//
LOCUS       NZ_WMZI01000000      2026909 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain BIOML-A2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMZI00000000
VERSION     NZ_WMZI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11946357
            Assembly: GCF_009717845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2026909)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2026909)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMZI00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_WMZI00000000.  This version of the
            project (01) has the accession number NZ_WMZI01000000, and consists
            of sequences WMZI01000001-WMZI01000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123.682x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009717845.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:34:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,987
            CDSs (total)                      :: 1,939
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 18 of 49
            Pseudo Genes (incomplete)         :: 32 of 49
            Pseudo Genes (internal stop)      :: 14 of 49
            Pseudo Genes (multiple problems)  :: 11 of 49
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026909
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A2"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2015-12-09"
WGS         WMZI01000001-WMZI01000013
WGS_SCAFLD  NZ_WMZI01000001-NZ_WMZI01000013
//
LOCUS       NZ_WMXZ01000000      2420091 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus salivarius strain BIOML-A20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMXZ00000000
VERSION     NZ_WMXZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11946393
            Assembly: GCF_009717145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus salivarius
  ORGANISM  Streptococcus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2420091)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2420091)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMXZ00000000.1.
            The Streptococcus salivarius whole genome shotgun (WGS) project has
            the project accession NZ_WMXZ00000000.  This version of the project
            (01) has the accession number NZ_WMXZ01000000, and consists of
            sequences WMXZ01000001-WMXZ01000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180.019x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009717145.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:32:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,280
            CDSs (total)                      :: 2,225
            Genes (coding)                    :: 2,180
            CDSs (with protein)               :: 2,180
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 15 of 45
            Pseudo Genes (incomplete)         :: 36 of 45
            Pseudo Genes (internal stop)      :: 4 of 45
            Pseudo Genes (multiple problems)  :: 9 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420091
                     /organism="Streptococcus salivarius"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A20"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1304"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WMXZ01000001-WMXZ01000037
WGS_SCAFLD  NZ_WMXZ01000001-NZ_WMXZ01000037
//
LOCUS       NZ_SLXE01000000      2641134 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Uruburuella suis strain DSM 17474, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SLXE00000000
VERSION     NZ_SLXE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866380
            Assembly: GCF_004341385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Uruburuella suis
  ORGANISM  Uruburuella suis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Uruburuella.
REFERENCE   1  (bases 1 to 2641134)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2641134)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLXE00000000.1.
            The Uruburuella suis whole genome shotgun (WGS) project has the
            project accession NZ_SLXE00000000.  This version of the project
            (01) has the accession number NZ_SLXE01000000, and consists of
            sequences SLXE01000001-SLXE01000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 568.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341385.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:07:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,397
            CDSs (total)                      :: 2,341
            Genes (coding)                    :: 2,322
            CDSs (with protein)               :: 2,322
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 4 of 19
            Pseudo Genes (incomplete)         :: 17 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            Pseudo Genes (multiple problems)  :: 2 of 19
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2641134
                     /organism="Uruburuella suis"
                     /mol_type="genomic DNA"
                     /strain="DSM 17474"
                     /culture_collection="DSM:17474"
                     /type_material="type strain of Uruburuella suis"
                     /db_xref="taxon:252130"
WGS         SLXE01000001-SLXE01000065
WGS_SCAFLD  NZ_SLXE01000001-NZ_SLXE01000065
//
LOCUS       NZ_WMZE01000000      1949143 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain BIOML-A6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMZE00000000
VERSION     NZ_WMZE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11946361
            Assembly: GCF_009717765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1949143)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 1949143)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMZE00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_WMZE00000000.  This version of the
            project (01) has the accession number NZ_WMZE01000000, and consists
            of sequences WMZE01000001-WMZE01000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 57.699x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009717765.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:33:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,903
            CDSs (total)                      :: 1,853
            Genes (coding)                    :: 1,815
            CDSs (with protein)               :: 1,815
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 14 of 38
            Pseudo Genes (incomplete)         :: 26 of 38
            Pseudo Genes (internal stop)      :: 10 of 38
            Pseudo Genes (multiple problems)  :: 9 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949143
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A6"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-02-19"
WGS         WMZE01000001-WMZE01000006
WGS_SCAFLD  NZ_WMZE01000001-NZ_WMZE01000006
//
LOCUS       NZ_QYCI01000000      2020767 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain UAB-5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QYCI00000000
VERSION     NZ_QYCI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09101744
            Assembly: GCF_012642325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2020767)
  AUTHORS   Momeni,S.S., Beno,S.M., Baker,J.L., Edlund,A., Ghazal,T.,
            Childers,N.K. and Wu,H.
  TITLE     Caries-Associated Biosynthetic Gene Clusters in Streptococcus
            mutans
  JOURNAL   J Dent Res 99 (8), 969-976 (2020)
   PUBMED   32298190
REFERENCE   2  (bases 1 to 2020767)
  AUTHORS   Momeni,S. and Childers,N.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) Pediatric Dentistry, University of Alabama
            at Birmingham, LHRB 238, 701 19th Street South, Birmingham, AL
            35294-0007, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QYCI00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_QYCI00000000.  This version of the project
            (01) has the accession number NZ_QYCI01000000, and consists of
            sequences QYCI01000001-QYCI01000022.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 23.514901477832513x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012642325.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:11:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,006
            CDSs (total)                      :: 1,951
            Genes (coding)                    :: 1,874
            CDSs (with protein)               :: 1,874
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 44 of 77
            Pseudo Genes (incomplete)         :: 41 of 77
            Pseudo Genes (internal stop)      :: 28 of 77
            Pseudo Genes (multiple problems)  :: 30 of 77
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020767
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="UAB-5"
                     /serotype="C"
                     /isolation_source="plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: Alabama"
                     /lat_lon="32.44 N 87.51 W"
                     /collection_date="2010-04-13"
                     /collected_by="Noel Childers-UAB"
                     /genotype="G13"
WGS         QYCI01000001-QYCI01000022
WGS_SCAFLD  NZ_QYCI01000001-NZ_QYCI01000022
//
LOCUS       NZ_SMAO01000000      4073290 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Thiobaca trueperi strain DSM 13587, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMAO00000000
VERSION     NZ_SMAO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10363437
            Assembly: GCF_004342175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thiobaca trueperi
  ORGANISM  Thiobaca trueperi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Chromatiales; Chromatiaceae; Thiobaca.
REFERENCE   1  (bases 1 to 4073290)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4073290)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAO00000000.1.
            The Thiobaca trueperi whole genome shotgun (WGS) project has the
            project accession NZ_SMAO00000000.  This version of the project
            (01) has the accession number NZ_SMAO01000000, and consists of
            sequences SMAO01000001-SMAO01000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 368.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:12:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,703
            CDSs (total)                      :: 3,650
            Genes (coding)                    :: 3,606
            CDSs (with protein)               :: 3,606
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 8 of 44
            Pseudo Genes (incomplete)         :: 40 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 4 of 44
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4073290
                     /organism="Thiobaca trueperi"
                     /mol_type="genomic DNA"
                     /strain="DSM 13587"
                     /culture_collection="DSM:13587"
                     /type_material="type strain of Thiobaca trueperi"
                     /db_xref="taxon:127458"
                     /geo_loc_name="Australia: New South Wales, Albury"
WGS         SMAO01000001-SMAO01000021
WGS_SCAFLD  NZ_SMAO01000001-NZ_SMAO01000021
//
LOCUS       NZ_QYBU01000000      2009530 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain UAB-26, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QYBU00000000
VERSION     NZ_QYBU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09101765
            Assembly: GCF_012642035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2009530)
  AUTHORS   Momeni,S.S., Beno,S.M., Baker,J.L., Edlund,A., Ghazal,T.,
            Childers,N.K. and Wu,H.
  TITLE     Caries-Associated Biosynthetic Gene Clusters in Streptococcus
            mutans
  JOURNAL   J Dent Res 99 (8), 969-976 (2020)
   PUBMED   32298190
REFERENCE   2  (bases 1 to 2009530)
  AUTHORS   Momeni,S. and Childers,N.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2018) Pediatric Dentistry, University of Alabama
            at Birmingham, LHRB 238, 701 19th Street South, Birmingham, AL
            35294-0007, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QYBU00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_QYBU00000000.  This version of the project
            (01) has the accession number NZ_QYBU01000000, and consists of
            sequences QYBU01000001-QYBU01000023.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29.732758620689655x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012642035.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:11:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,989
            CDSs (total)                      :: 1,938
            Genes (coding)                    :: 1,854
            CDSs (with protein)               :: 1,854
            Genes (RNA)                       :: 51
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 40 of 84
            Pseudo Genes (incomplete)         :: 47 of 84
            Pseudo Genes (internal stop)      :: 28 of 84
            Pseudo Genes (multiple problems)  :: 24 of 84
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009530
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="UAB-26"
                     /serotype="C"
                     /isolation_source="plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: Alabama"
                     /lat_lon="32.44 N 87.51 W"
                     /collection_date="2009-08-18"
                     /collected_by="Noel Childers-UAB"
                     /genotype="G01b"
WGS         QYBU01000001-QYBU01000023
WGS_SCAFLD  NZ_QYBU01000001-NZ_QYBU01000023
//
LOCUS       NZ_RXZB01000000      2073321 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain UAB-14, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RXZB00000000
VERSION     NZ_RXZB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09101753
            Assembly: GCF_012641615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2073321)
  AUTHORS   Momeni,S.S., Beno,S.M., Baker,J.L., Edlund,A., Ghazal,T.,
            Childers,N.K. and Wu,H.
  TITLE     Caries-Associated Biosynthetic Gene Clusters in Streptococcus
            mutans
  JOURNAL   J Dent Res 99 (8), 969-976 (2020)
   PUBMED   32298190
REFERENCE   2  (bases 1 to 2073321)
  AUTHORS   Momeni,S. and Childers,N.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2018) Pediatric Dentistry, University of Alabama
            at Birmingham, LHRB 238, 701 19th Street South, Birmingham, AL
            35294-0007, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RXZB00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_RXZB00000000.  This version of the project
            (01) has the accession number NZ_RXZB01000000, and consists of
            sequences RXZB01000001-RXZB01000031.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 102.2x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012641615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:12:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,061
            CDSs (total)                      :: 2,003
            Genes (coding)                    :: 1,916
            CDSs (with protein)               :: 1,916
            Genes (RNA)                       :: 58
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 46 of 87
            Pseudo Genes (incomplete)         :: 47 of 87
            Pseudo Genes (internal stop)      :: 23 of 87
            Pseudo Genes (multiple problems)  :: 21 of 87
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073321
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="UAB-14"
                     /serotype="F"
                     /isolation_source="plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: Alabama"
                     /lat_lon="32.44 N 87.51 W"
                     /collection_date="2007-04-17"
                     /collected_by="Noel Childers-UAB"
                     /genotype="G18"
WGS         RXZB01000001-RXZB01000031
WGS_SCAFLD  NZ_RXZB01000001-NZ_RXZB01000031
//
LOCUS       NZ_QYCG01000000      1958306 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain UAB-7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QYCG00000000
VERSION     NZ_QYCG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09101746
            Assembly: GCF_012642275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1958306)
  AUTHORS   Momeni,S.S., Beno,S.M., Baker,J.L., Edlund,A., Ghazal,T.,
            Childers,N.K. and Wu,H.
  TITLE     Caries-Associated Biosynthetic Gene Clusters in Streptococcus
            mutans
  JOURNAL   J Dent Res 99 (8), 969-976 (2020)
   PUBMED   32298190
REFERENCE   2  (bases 1 to 1958306)
  AUTHORS   Momeni,S. and Childers,N.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) Pediatric Dentistry, University of Alabama
            at Birmingham, LHRB 238, 701 19th Street South, Birmingham, AL
            35294-0007, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QYCG00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_QYCG00000000.  This version of the project
            (01) has the accession number NZ_QYCG01000000, and consists of
            sequences QYCG01000001-QYCG01000024.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.57204433497537x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012642275.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:12:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,952
            CDSs (total)                      :: 1,894
            Genes (coding)                    :: 1,816
            CDSs (with protein)               :: 1,816
            Genes (RNA)                       :: 58
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 40 of 78
            Pseudo Genes (incomplete)         :: 45 of 78
            Pseudo Genes (internal stop)      :: 21 of 78
            Pseudo Genes (multiple problems)  :: 21 of 78
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958306
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="UAB-7"
                     /serotype="C"
                     /isolation_source="plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: Alabama"
                     /lat_lon="32.44 N 87.51 W"
                     /collection_date="2010-04-13"
                     /collected_by="Noel Childers-UAB"
                     /genotype="G05"
WGS         QYCG01000001-QYCG01000024
WGS_SCAFLD  NZ_QYCG01000001-NZ_QYCG01000024
//
LOCUS       NZ_QYBN01000000      2050803 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain UAB-33, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QYBN00000000
VERSION     NZ_QYBN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09101772
            Assembly: GCF_012641905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2050803)
  AUTHORS   Momeni,S.S., Beno,S.M., Baker,J.L., Edlund,A., Ghazal,T.,
            Childers,N.K. and Wu,H.
  TITLE     Caries-Associated Biosynthetic Gene Clusters in Streptococcus
            mutans
  JOURNAL   J Dent Res 99 (8), 969-976 (2020)
   PUBMED   32298190
REFERENCE   2  (bases 1 to 2050803)
  AUTHORS   Momeni,S. and Childers,N.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2018) Pediatric Dentistry, University of Alabama
            at Birmingham, LHRB 238, 701 19th Street South, Birmingham, AL
            35294-0007, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QYBN00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_QYBN00000000.  This version of the project
            (01) has the accession number NZ_QYBN01000000, and consists of
            sequences QYBN01000001-QYBN01000014.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38.38928571428571x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012641905.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:14:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,039
            CDSs (total)                      :: 1,983
            Genes (coding)                    :: 1,903
            CDSs (with protein)               :: 1,903
            Genes (RNA)                       :: 56
            rRNAs                             :: 4, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 42 of 80
            Pseudo Genes (incomplete)         :: 45 of 80
            Pseudo Genes (internal stop)      :: 30 of 80
            Pseudo Genes (multiple problems)  :: 28 of 80
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050803
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="UAB-33"
                     /serotype="C"
                     /isolation_source="plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: Alabama"
                     /lat_lon="32.44 N 87.51 W"
                     /collection_date="2008-08"
                     /collected_by="Noel Childers-UAB"
                     /genotype="G09"
WGS         QYBN01000001-QYBN01000014
WGS_SCAFLD  NZ_QYBN01000001-NZ_QYBN01000014
//
LOCUS       NZ_QQQF01000000      4518386 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tsukamurella pulmonis strain PW1004, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QQQF00000000
VERSION     NZ_QQQF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09691327
            Assembly: GCF_003346735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tsukamurella pulmonis
  ORGANISM  Tsukamurella pulmonis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Tsukamurellaceae; Tsukamurella.
REFERENCE   1  (bases 1 to 4518386)
  AUTHORS   Woo,P.C.Y., Lau,S.K.P., Teng,J.L.L. and Tang,Y.
  TITLE     Characterization of Tsukamurella and its association with
            ophthalmologic infections
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4518386)
  AUTHORS   Woo,P.C.Y., Lau,S.K.P., Teng,J.L.L. and Tang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2018) Department of Microbiology, The University
            of Hong Kong, Pokfulam Rd, Hong Kong, Hong Kong
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQQF00000000.1.
            The Tsukamurella pulmonis whole genome shotgun (WGS) project has
            the project accession NZ_QQQF00000000.  This version of the project
            (01) has the accession number NZ_QQQF01000000, and consists of
            sequences QQQF01000001-QQQF01000258.
            Bacteria available from Department of Microbiology Li Ka Shing
            Faculty of Medicine The University of Hong Kong Hong Kong.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: Velvet v. 1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 540x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003346735.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:06:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,848
            CDSs (total)                      :: 4,796
            Genes (coding)                    :: 4,595
            CDSs (with protein)               :: 4,595
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 201
            CDSs (without protein)            :: 201
            Pseudo Genes (ambiguous residues) :: 0 of 201
            Pseudo Genes (frameshifted)       :: 11 of 201
            Pseudo Genes (incomplete)         :: 193 of 201
            Pseudo Genes (internal stop)      :: 1 of 201
            Pseudo Genes (multiple problems)  :: 4 of 201
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4518386
                     /organism="Tsukamurella pulmonis"
                     /mol_type="genomic DNA"
                     /strain="PW1004"
                     /isolation_source="Eye swab of a patient with
                     Conjunctivitis"
                     /host="Homo sapiens"
                     /db_xref="taxon:47312"
                     /geo_loc_name="Hong Kong"
WGS         QQQF01000001-QQQF01000258
WGS_SCAFLD  NZ_QQQF01000001-NZ_QQQF01000258
//
LOCUS       NZ_QYBQ01000000      2014838 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain UAB-30, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QYBQ00000000
VERSION     NZ_QYBQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09101769
            Assembly: GCF_012641965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2014838)
  AUTHORS   Momeni,S.S., Beno,S.M., Baker,J.L., Edlund,A., Ghazal,T.,
            Childers,N.K. and Wu,H.
  TITLE     Caries-Associated Biosynthetic Gene Clusters in Streptococcus
            mutans
  JOURNAL   J Dent Res 99 (8), 969-976 (2020)
   PUBMED   32298190
REFERENCE   2  (bases 1 to 2014838)
  AUTHORS   Momeni,S. and Childers,N.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2018) Pediatric Dentistry, University of Alabama
            at Birmingham, LHRB 238, 701 19th Street South, Birmingham, AL
            35294-0007, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QYBQ00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_QYBQ00000000.  This version of the project
            (01) has the accession number NZ_QYBQ01000000, and consists of
            sequences QYBQ01000001-QYBQ01000016.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 32.29371921182266x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012641965.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:12:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,990
            CDSs (total)                      :: 1,932
            Genes (coding)                    :: 1,858
            CDSs (with protein)               :: 1,858
            Genes (RNA)                       :: 58
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 49 of 74
            Pseudo Genes (incomplete)         :: 35 of 74
            Pseudo Genes (internal stop)      :: 20 of 74
            Pseudo Genes (multiple problems)  :: 23 of 74
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014838
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="UAB-30"
                     /serotype="C"
                     /isolation_source="saliva"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: Alabama"
                     /lat_lon="32.44 N 87.51 W"
                     /collection_date="2008-01-15"
                     /collected_by="Noel Childers-UAB"
                     /genotype="G02"
WGS         QYBQ01000001-QYBQ01000016
WGS_SCAFLD  NZ_QYBQ01000001-NZ_QYBQ01000016
//
LOCUS       NZ_SLUL01000000      2900928 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Thermolongibacillus altinsuensis strain DSM 24979, whole genome
            shotgun sequencing project.
ACCESSION   NZ_SLUL00000000
VERSION     NZ_SLUL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362784
            Assembly: GCF_004341205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thermolongibacillus altinsuensis
  ORGANISM  Thermolongibacillus altinsuensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Anoxybacillaceae; Thermolongibacillus.
REFERENCE   1  (bases 1 to 2900928)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2900928)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLUL00000000.1.
            The Thermolongibacillus altinsuensis whole genome shotgun (WGS)
            project has the project accession NZ_SLUL00000000.  This version of
            the project (01) has the accession number NZ_SLUL01000000, and
            consists of sequences SLUL01000001-SLUL01000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 517.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341205.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,098
            CDSs (total)                      :: 3,009
            Genes (coding)                    :: 2,940
            CDSs (with protein)               :: 2,940
            Genes (RNA)                       :: 89
            rRNAs                             :: 7, 5, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 5, 5, 2 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 31 of 69
            Pseudo Genes (incomplete)         :: 49 of 69
            Pseudo Genes (internal stop)      :: 10 of 69
            Pseudo Genes (multiple problems)  :: 17 of 69
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900928
                     /organism="Thermolongibacillus altinsuensis"
                     /mol_type="genomic DNA"
                     /strain="DSM 24979"
                     /culture_collection="DSM:24979"
                     /type_material="type strain of Thermolongibacillus
                     altinsuensis"
                     /db_xref="taxon:575256"
WGS         SLUL01000001-SLUL01000039
WGS_SCAFLD  NZ_SLUL01000001-NZ_SLUL01000039
//
LOCUS       NZ_SMAB01000000      2424016 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tepidibacillus fermentans strain DSM 23802, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMAB00000000
VERSION     NZ_SMAB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362950
            Assembly: GCF_004342885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tepidibacillus fermentans
  ORGANISM  Tepidibacillus fermentans
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Tepidibacillus.
REFERENCE   1  (bases 1 to 2424016)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2424016)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAB00000000.1.
            The Tepidibacillus fermentans whole genome shotgun (WGS) project
            has the project accession NZ_SMAB00000000.  This version of the
            project (01) has the accession number NZ_SMAB01000000, and consists
            of sequences SMAB01000001-SMAB01000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 619.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342885.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:24:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,535
            CDSs (total)                      :: 2,461
            Genes (coding)                    :: 2,404
            CDSs (with protein)               :: 2,404
            Genes (RNA)                       :: 74
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 20 of 57
            Pseudo Genes (incomplete)         :: 45 of 57
            Pseudo Genes (internal stop)      :: 7 of 57
            Pseudo Genes (multiple problems)  :: 14 of 57
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424016
                     /organism="Tepidibacillus fermentans"
                     /mol_type="genomic DNA"
                     /strain="DSM 23802"
                     /culture_collection="DSM:23802"
                     /type_material="type strain of Tepidibacillus fermentans"
                     /db_xref="taxon:1281767"
WGS         SMAB01000001-SMAB01000040
WGS_SCAFLD  NZ_SMAB01000001-NZ_SMAB01000040
//
LOCUS       NZ_CABFME010000000   1934591 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus anginosus isolate Streptococcus_anginosus_BgEED29,
            whole genome shotgun sequencing project.
ACCESSION   NZ_CABFME000000000
VERSION     NZ_CABFME000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA5664374
            Assembly: GCF_901875545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus anginosus
  ORGANISM  Streptococcus anginosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus anginosus group.
REFERENCE   1  (bases 1 to 1934591)
  AUTHORS   Hibberd,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2019) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Laboratory of Jeffrey I. Gordon, Campus Box 8510, 4515
            McKinley Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CABFME000000000.1.
            The Streptococcus anginosus whole genome shotgun (WGS) project has
            the project accession NZ_CABFME000000000.  This version of the
            project (01) has the accession number NZ_CABFME010000000, and
            consists of sequences CABFME010000001-CABFME010000049.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_901875545.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:44:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,968
            CDSs (total)                      :: 1,919
            Genes (coding)                    :: 1,855
            CDSs (with protein)               :: 1,855
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 27 of 64
            Pseudo Genes (incomplete)         :: 35 of 64
            Pseudo Genes (internal stop)      :: 22 of 64
            Pseudo Genes (multiple problems)  :: 17 of 64
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934591
                     /organism="Streptococcus anginosus"
                     /mol_type="genomic DNA"
                     /isolate="Streptococcus_anginosus_BgEED29"
                     /db_xref="taxon:1328"
WGS         CABFME010000001-CABFME010000049
WGS_SCAFLD  NZ_CABFME010000001-NZ_CABFME010000049
//
LOCUS       NZ_CACRTL010000000   3413006 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Thomasclavelia ramosa isolate CramosumLFYP8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CACRTL000000000
VERSION     NZ_CACRTL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6160268
            Assembly: GCF_902652225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Thomasclavelia ramosa (Clostridium ramosum)
  ORGANISM  Thomasclavelia ramosa
            Bacteria; Bacillati; Bacillota; Erysipelotrichia;
            Erysipelotrichales; Coprobacillaceae; Thomasclavelia.
REFERENCE   1
  AUTHORS   Feng,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) The Edison Family Center of Genome Sciences
            and Systems Biology, Dr. Jeffrey I. Gordon, 4523 Clayton Avenue,
            Campus Box 8510, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CACRTL000000000.1.
            The Thomasclavelia ramosa whole genome shotgun (WGS) project has
            the project accession NZ_CACRTL000000000.  This version of the
            project (01) has the accession number NZ_CACRTL010000000, and
            consists of sequences CACRTL010000001-CACRTL010000037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_902652225.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:34:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,387
            CDSs (total)                      :: 3,316
            Genes (coding)                    :: 3,276
            CDSs (with protein)               :: 3,276
            Genes (RNA)                       :: 71
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 6 of 40
            Pseudo Genes (incomplete)         :: 30 of 40
            Pseudo Genes (internal stop)      :: 5 of 40
            Pseudo Genes (multiple problems)  :: 1 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413006
                     /organism="Thomasclavelia ramosa"
                     /mol_type="genomic DNA"
                     /isolate="CramosumLFYP8"
                     /db_xref="taxon:1547"
WGS         CACRTL010000001-CACRTL010000037
WGS_SCAFLD  NZ_CACRTL010000001-NZ_CACRTL010000037
//
LOCUS       NZ_SMAH01000000      2707895 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tepidimonas ignava strain DSM 12034, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMAH00000000
VERSION     NZ_SMAH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10363434
            Assembly: GCF_004342625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tepidimonas ignava
  ORGANISM  Tepidimonas ignava
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Tepidimonas.
REFERENCE   1  (bases 1 to 2707895)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2707895)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAH00000000.1.
            The Tepidimonas ignava whole genome shotgun (WGS) project has the
            project accession NZ_SMAH00000000.  This version of the project
            (01) has the accession number NZ_SMAH01000000, and consists of
            sequences SMAH01000001-SMAH01000032.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 554.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342625.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:34:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,587
            Genes (coding)                    :: 2,552
            CDSs (with protein)               :: 2,552
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 8 of 35
            Pseudo Genes (incomplete)         :: 30 of 35
            Pseudo Genes (internal stop)      :: 1 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2707895
                     /organism="Tepidimonas ignava"
                     /mol_type="genomic DNA"
                     /strain="DSM 12034"
                     /culture_collection="DSM:12034"
                     /type_material="type strain of Tepidimonas ignava"
                     /db_xref="taxon:114249"
WGS         SMAH01000001-SMAH01000032
WGS_SCAFLD  NZ_SMAH01000001-NZ_SMAH01000032
//
LOCUS       NZ_CAMHZB010000000   2068033 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mitis isolate Streptococcus mitis, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAMHZB000000000
VERSION     NZ_CAMHZB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA14489569
            Assembly: GCF_946190085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mitis
  ORGANISM  Streptococcus mitis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus mitis group.
REFERENCE   1  (bases 1 to 2068033)
  AUTHORS   Kalizang'oma,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2022) UNIVERSITY COLLEGE LONDON, Rayne Building,
            5 University Street, London WC1E 6JF, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAMHZB000000000.1.
            The Streptococcus mitis whole genome shotgun (WGS) project has the
            project accession NZ_CAMHZB000000000.  This version of the project
            (01) has the accession number NZ_CAMHZB010000000, and consists of
            sequences CAMHZB010000001-CAMHZB010000198.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_946190085.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:27:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,071
            CDSs (total)                      :: 2,021
            Genes (coding)                    :: 1,949
            CDSs (with protein)               :: 1,949
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 20 of 72
            Pseudo Genes (incomplete)         :: 53 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 15 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2068033
                     /organism="Streptococcus mitis"
                     /mol_type="genomic DNA"
                     /isolate="Streptococcus mitis"
                     /host="Homo sapiens"
                     /db_xref="taxon:28037"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2019"
                     /collected_by="Akuzike Kalizangoma"
WGS         CAMHZB010000001-CAMHZB010000198
WGS_SCAFLD  NZ_CAMHZB010000001-NZ_CAMHZB010000198
//
LOCUS       NZ_JAPMUF010000000   1994169 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain CIM3001, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPMUF000000000
VERSION     NZ_JAPMUF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31887641
            Assembly: GCF_029071925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1994169)
  AUTHORS   Zhang,Y.
  TITLE     Streptococcus mutans from dental plaque
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1994169)
  AUTHORS   Zhang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-NOV-2022) Institute of Microbiology, Chinese Academy
            of Sciences, Beichen West Road, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPMUF000000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_JAPMUF000000000.  This version of the project
            (01) has the accession number NZ_JAPMUF010000000, and consists of
            sequences JAPMUF010000001-JAPMUF010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Yihua Chen, Institute of
            Microbiology, Chinese Academy of Sciences.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029071925.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:43:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,987
            CDSs (total)                      :: 1,933
            Genes (coding)                    :: 1,856
            CDSs (with protein)               :: 1,856
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 47 of 77
            Pseudo Genes (incomplete)         :: 33 of 77
            Pseudo Genes (internal stop)      :: 28 of 77
            Pseudo Genes (multiple problems)  :: 26 of 77
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994169
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="CIM3001"
                     /isolation_source="oral cavity"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="China: Beijing"
                     /collection_date="2015-12-10"
WGS         JAPMUF010000001-JAPMUF010000016
WGS_SCAFLD  NZ_JAPMUF010000001-NZ_JAPMUF010000016
//
LOCUS       NZ_SLXQ01000000      6397398 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tamaricihabitans halophyticus strain DSM 45765, whole genome
            shotgun sequencing project.
ACCESSION   NZ_SLXQ00000000
VERSION     NZ_SLXQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10864761
            Assembly: GCF_004340875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tamaricihabitans halophyticus
  ORGANISM  Tamaricihabitans halophyticus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae; Tamaricihabitans.
REFERENCE   1  (bases 1 to 6397398)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6397398)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLXQ00000000.1.
            The Tamaricihabitans halophyticus whole genome shotgun (WGS)
            project has the project accession NZ_SLXQ00000000.  This version of
            the project (01) has the accession number NZ_SLXQ01000000, and
            consists of sequences SLXQ01000001-SLXQ01000050.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 234.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004340875.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:37:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,027
            CDSs (total)                      :: 5,970
            Genes (coding)                    :: 5,923
            CDSs (with protein)               :: 5,923
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 10 of 47
            Pseudo Genes (incomplete)         :: 37 of 47
            Pseudo Genes (internal stop)      :: 5 of 47
            Pseudo Genes (multiple problems)  :: 4 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6397398
                     /organism="Tamaricihabitans halophyticus"
                     /mol_type="genomic DNA"
                     /strain="DSM 45765"
                     /culture_collection="DSM:45765"
                     /type_material="type strain of Tamaricihabitans
                     halophyticus"
                     /db_xref="taxon:1262583"
WGS         SLXQ01000001-SLXQ01000050
WGS_SCAFLD  NZ_SLXQ01000001-NZ_SLXQ01000050
//
LOCUS       NZ_JARFII010000000   2499434 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus gordonii strain DFI.4.115, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARFII000000000
VERSION     NZ_JARFII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33554262
            Assembly: GCF_029076665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus gordonii
  ORGANISM  Streptococcus gordonii
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2499434)
  AUTHORS   Mostad,J., Paddock,L., Medina,S., Waligurski,E., Barat,B.,
            Smith,R., Burgo,V., Metcalfe,C., Woodson,C., Sundararajan,A.,
            Ramaswamy,R., Lin,H. and Pamer,E.G.
  TITLE     DFI Biobank Strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2499434)
  AUTHORS   Mostad,J., Paddock,L., Medina,S., Waligurski,E., Barat,B.,
            Smith,R., Burgo,V., Metcalfe,C., Woodson,C., Sundararajan,A.,
            Ramaswamy,R., Lin,H. and Pamer,E.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2023) The Duchossois Family Institute, The
            University of Chicago, Knapp Center for Biomedical Discovery 900
            East 57th Street, KCBD 4100, Chicago, IL 60637, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARFII000000000.1.
            The Streptococcus gordonii whole genome shotgun (WGS) project has
            the project accession NZ_JARFII000000000.  This version of the
            project (01) has the accession number NZ_JARFII010000000, and
            consists of sequences JARFII010000001-JARFII010000964.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-JUL-2022
            Assembly Method        :: SPAdes v. v3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029076665.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:57:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,145
            CDSs (total)                      :: 3,056
            Genes (coding)                    :: 2,516
            CDSs (with protein)               :: 2,516
            Genes (RNA)                       :: 89
            rRNAs                             :: 4, 12, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 23S)
            partial rRNAs                     :: 12, 8 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 540
            CDSs (without protein)            :: 540
            Pseudo Genes (ambiguous residues) :: 0 of 540
            Pseudo Genes (frameshifted)       :: 28 of 540
            Pseudo Genes (incomplete)         :: 455 of 540
            Pseudo Genes (internal stop)      :: 111 of 540
            Pseudo Genes (multiple problems)  :: 52 of 540
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499434
                     /organism="Streptococcus gordonii"
                     /mol_type="genomic DNA"
                     /strain="DFI.4.115"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:1302"
                     /geo_loc_name="USA: Chicago"
                     /collection_date="2022-07-13"
WGS         JARFII010000001-JARFII010000964
WGS_SCAFLD  NZ_JARFII010000001-NZ_JARFII010000964
//
LOCUS       NZ_PKLR01000000      7227023 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces albidoflavus strain CGMCC 4.1681, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PKLR00000000
VERSION     NZ_PKLR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08225703
            Assembly: GCF_004195845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces albidoflavus
  ORGANISM  Streptomyces albidoflavus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces
            albidoflavus group.
REFERENCE   1  (bases 1 to 7227023)
  AUTHORS   Li,Y. and Huang,Y.
  TITLE     Population genomics insights into the ecological differentiation
            and adaptive evolution in streptomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7227023)
  AUTHORS   Li,Y. and Huang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2017) State Key Laboratory of Microbial
            Resources, Institute of Microbiology, Chinese Academy of Sciences,
            No. 1 West Beichen Road, Chaoyang District, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PKLR00000000.1.
            The Streptomyces albidoflavus whole genome shotgun (WGS) project
            has the project accession NZ_PKLR00000000.  This version of the
            project (01) has the accession number NZ_PKLR01000000, and consists
            of sequences PKLR01000001-PKLR01000054.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. DEC-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004195845.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:55:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,375
            CDSs (total)                      :: 6,297
            Genes (coding)                    :: 6,193
            CDSs (with protein)               :: 6,193
            Genes (RNA)                       :: 78
            rRNAs                             :: 5, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 34 of 104
            Pseudo Genes (incomplete)         :: 72 of 104
            Pseudo Genes (internal stop)      :: 14 of 104
            Pseudo Genes (multiple problems)  :: 12 of 104
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7227023
                     /organism="Streptomyces albidoflavus"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 4.1681"
                     /isolation_source="Contaminated fungus plate"
                     /db_xref="taxon:1886"
                     /geo_loc_name="USA: Commercial Solvents Corporation"
WGS         PKLR01000001-PKLR01000054
WGS_SCAFLD  NZ_PKLR01000001-NZ_PKLR01000054
//
LOCUS       NZ_PKLS01000000      7144751 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces albidoflavus strain D62, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PKLS00000000
VERSION     NZ_PKLS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08225704
            Assembly: GCF_004196135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces albidoflavus
  ORGANISM  Streptomyces albidoflavus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces
            albidoflavus group.
REFERENCE   1  (bases 1 to 7144751)
  AUTHORS   Li,Y. and Huang,Y.
  TITLE     Population genomics insights into the ecological differentiation
            and adaptive evolution in streptomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7144751)
  AUTHORS   Li,Y. and Huang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2017) State Key Laboratory of Microbial
            Resources, Institute of Microbiology, Chinese Academy of Sciences,
            No. 1 West Beichen Road, Chaoyang District, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PKLS00000000.1.
            The Streptomyces albidoflavus whole genome shotgun (WGS) project
            has the project accession NZ_PKLS00000000.  This version of the
            project (01) has the accession number NZ_PKLS01000000, and consists
            of sequences PKLS01000001-PKLS01000087.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. Dec-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004196135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:05:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,308
            CDSs (total)                      :: 6,231
            Genes (coding)                    :: 6,134
            CDSs (with protein)               :: 6,134
            Genes (RNA)                       :: 77
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 41 of 97
            Pseudo Genes (incomplete)         :: 60 of 97
            Pseudo Genes (internal stop)      :: 4 of 97
            Pseudo Genes (multiple problems)  :: 8 of 97
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7144751
                     /organism="Streptomyces albidoflavus"
                     /mol_type="genomic DNA"
                     /strain="D62"
                     /isolation_source="Medicinal herb (leaf of CJ)"
                     /db_xref="taxon:1886"
                     /geo_loc_name="China: Xishuangbanna, Yunnan Province"
WGS         PKLS01000001-PKLS01000087
WGS_SCAFLD  NZ_PKLS01000001-NZ_PKLS01000087
//
LOCUS       NZ_JAANXS010000000   2883975 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sutterella wadsworthensis strain 877h, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAANXS000000000
VERSION     NZ_JAANXS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14213970
            Assembly: GCF_011320385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sutterella wadsworthensis
  ORGANISM  Sutterella wadsworthensis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Sutterellaceae; Sutterella.
REFERENCE   1  (bases 1 to 2883975)
  AUTHORS   Fresia,P., Berthenet,E., Diaz-Viraque,F., Forster,S.C., Ferres,I.,
            Buissoniere,A., Ducournau,A., Bessede,E., Megraud,F., Lehours,P.
            and Iraola,G.
  TITLE     Clinical lineages of Sutterella wadsworthensis reside in the
            intestinal microbiota of healthy humans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2883975)
  AUTHORS   Fresia,P., Berthenet,E., Diaz-Viraque,F., Forster,S.C., Ferres,I.,
            Buissoniere,A., Ducournau,A., Bessede,E., Megraud,F., Lehours,P.
            and Iraola,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2020) Microbial Genomics Laboratory, Institut
            Pasteur Montevideo, Mataojo 2020, Montevideo, Montevideo 11400,
            Uruguay
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANXS000000000.1.
            The Sutterella wadsworthensis whole genome shotgun (WGS) project
            has the project accession NZ_JAANXS000000000.  This version of the
            project (01) has the accession number NZ_JAANXS010000000, and
            consists of sequences JAANXS010000001-JAANXS010000064.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011320385.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:13:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,395
            CDSs (total)                      :: 2,330
            Genes (coding)                    :: 2,294
            CDSs (with protein)               :: 2,294
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 6 of 36
            Pseudo Genes (incomplete)         :: 31 of 36
            Pseudo Genes (internal stop)      :: 3 of 36
            Pseudo Genes (multiple problems)  :: 3 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883975
                     /organism="Sutterella wadsworthensis"
                     /mol_type="genomic DNA"
                     /strain="877h"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:40545"
                     /geo_loc_name="France: Bordeaux"
                     /lat_lon="44.50 N 0.34 E"
                     /collection_date="2016-09-29"
                     /collected_by="Philippe Lehours"
WGS         JAANXS010000001-JAANXS010000064
WGS_SCAFLD  NZ_JAANXS010000001-NZ_JAANXS010000064
//
LOCUS       NZ_CEVXZL010000000   2077079 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Streptococcus sp. isolate DRR171479_bin_1439, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVXZL000000000
VERSION     NZ_CEVXZL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088372
            Sequence Read Archive: DRR171479
            Assembly: GCF_982401925.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Streptococcus sp. (human gut metagenome)
  ORGANISM  Streptococcus sp.
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2077079)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVXZL000000000.1.
            The Streptococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVXZL000000000.  This version of the project
            (01) has the accession number NZ_CEVXZL010000000, and consists of
            sequences CEVXZL010000001-CEVXZL010000113.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171479.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982401925.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:36:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,015
            CDSs (total)                      :: 2,001
            Genes (coding)                    :: 1,946
            CDSs (with protein)               :: 1,946
            Genes (RNA)                       :: 14
            tRNAs                             :: 10
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 16 of 55
            Pseudo Genes (incomplete)         :: 43 of 55
            Pseudo Genes (internal stop)      :: 6 of 55
            Pseudo Genes (multiple problems)  :: 9 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077079
                     /organism="Streptococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171479_bin_1439"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1306"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVXZL010000001-CEVXZL010000113
WGS_SCAFLD  NZ_CEVXZL010000001-NZ_CEVXZL010000113
//
LOCUS       NZ_PKLT01000000      7188121 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces albidoflavus strain FXJ8.011, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PKLT00000000
VERSION     NZ_PKLT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08225705
            Assembly: GCF_004195835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces albidoflavus
  ORGANISM  Streptomyces albidoflavus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces
            albidoflavus group.
REFERENCE   1  (bases 1 to 7188121)
  AUTHORS   Li,Y. and Huang,Y.
  TITLE     Population genomics insights into the ecological differentiation
            and adaptive evolution in streptomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7188121)
  AUTHORS   Li,Y. and Huang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2017) State Key Laboratory of Microbial
            Resources, Institute of Microbiology, Chinese Academy of Sciences,
            No. 1 West Beichen Road, Chaoyang District, Beijing 100101, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PKLT00000000.1.
            The Streptomyces albidoflavus whole genome shotgun (WGS) project
            has the project accession NZ_PKLT00000000.  This version of the
            project (01) has the accession number NZ_PKLT01000000, and consists
            of sequences PKLT01000001-PKLT01000048.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. Dec-2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004195835.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:23:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,307
            CDSs (total)                      :: 6,229
            Genes (coding)                    :: 6,138
            CDSs (with protein)               :: 6,138
            Genes (RNA)                       :: 78
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 42 of 91
            Pseudo Genes (incomplete)         :: 58 of 91
            Pseudo Genes (internal stop)      :: 8 of 91
            Pseudo Genes (multiple problems)  :: 15 of 91
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7188121
                     /organism="Streptomyces albidoflavus"
                     /mol_type="genomic DNA"
                     /strain="FXJ8.011"
                     /isolation_source="Deep-sea water"
                     /db_xref="taxon:1886"
                     /geo_loc_name="Indian Ocean: Southern"
WGS         PKLT01000001-PKLT01000048
WGS_SCAFLD  NZ_PKLT01000001-NZ_PKLT01000048
//
LOCUS       NZ_JADFBV010000000   1901554 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus uberis strain GCPRG102, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JADFBV000000000
VERSION     NZ_JADFBV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16448091
            Assembly: GCF_016838555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus uberis
  ORGANISM  Streptococcus uberis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1901554)
  AUTHORS   Ramay,H. and Alawneh,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2020) School of Veterianry Science, University of
            Queensland, Gatton, Gatton, QLD 4343, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADFBV000000000.1.
            The Streptococcus uberis whole genome shotgun (WGS) project has the
            project accession NZ_JADFBV000000000.  This version of the project
            (01) has the accession number NZ_JADFBV010000000, and consists of
            sequences JADFBV010000001-JADFBV010000014.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Newbler v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016838555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:40:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,903
            CDSs (total)                      :: 1,855
            Genes (coding)                    :: 1,826
            CDSs (with protein)               :: 1,826
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 15 of 29
            Pseudo Genes (incomplete)         :: 15 of 29
            Pseudo Genes (internal stop)      :: 11 of 29
            Pseudo Genes (multiple problems)  :: 8 of 29
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901554
                     /organism="Streptococcus uberis"
                     /mol_type="genomic DNA"
                     /strain="GCPRG102"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:1349"
                     /geo_loc_name="Australia: QLD2"
                     /collection_date="2019-05-01"
WGS         JADFBV010000001-JADFBV010000014
WGS_SCAFLD  NZ_JADFBV010000001-NZ_JADFBV010000014
//
LOCUS       NZ_CEWDOJ010000000   2034407 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Streptococcus sp. isolate DRR171970_bin_72, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWDOJ000000000
VERSION     NZ_CEWDOJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122092116
            Sequence Read Archive: DRR171970
            Assembly: GCF_982440675.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Streptococcus sp. (human gut metagenome)
  ORGANISM  Streptococcus sp.
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2034407)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWDOJ000000000.1.
            The Streptococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWDOJ000000000.  This version of the project
            (01) has the accession number NZ_CEWDOJ010000000, and consists of
            sequences CEWDOJ010000001-CEWDOJ010000183.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171970.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982440675.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:50:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,031
            CDSs (total)                      :: 2,008
            Genes (coding)                    :: 1,951
            CDSs (with protein)               :: 1,951
            Genes (RNA)                       :: 23
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 5 of 57
            Pseudo Genes (incomplete)         :: 52 of 57
            Pseudo Genes (internal stop)      :: 3 of 57
            Pseudo Genes (multiple problems)  :: 3 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034407
                     /organism="Streptococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171970_bin_72"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1306"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWDOJ010000001-CEWDOJ010000183
WGS_SCAFLD  NZ_CEWDOJ010000001-NZ_CEWDOJ010000183
//
LOCUS       NZ_JAJQXR010000000   3218909 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum maritimum strain NVIB-1501, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJQXR000000000
VERSION     NZ_JAJQXR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23968582
            Assembly: GCF_021246185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum maritimum
  ORGANISM  Tenacibaculum maritimum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 3218909)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Draft genome sequences of 13 Tenacibaculum maritimum isolates from
            farmed Norwegian lumpfish, Cyclopterus lumpus and turbot,
            Scophthalmus maximus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3218909)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2021) Fish Health Research Group, Norwegian
            Veterinary Institute, Elizabeth Stephansens vei 1, Aas 1431, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJQXR000000000.1.
            The Tenacibaculum maritimum whole genome shotgun (WGS) project has
            the project accession NZ_JAJQXR000000000.  This version of the
            project (01) has the accession number NZ_JAJQXR010000000, and
            consists of sequences JAJQXR010000001-JAJQXR010000100.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 86x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021246185.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:04:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,921
            CDSs (total)                      :: 2,868
            Genes (coding)                    :: 2,824
            CDSs (with protein)               :: 2,824
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 10 of 44
            Pseudo Genes (incomplete)         :: 38 of 44
            Pseudo Genes (internal stop)      :: 5 of 44
            Pseudo Genes (multiple problems)  :: 8 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218909
                     /organism="Tenacibaculum maritimum"
                     /mol_type="genomic DNA"
                     /strain="NVIB-1501"
                     /isolation_source="jaw"
                     /host="Scophthalmus maximus (Linnaeus, 1758)"
                     /db_xref="taxon:107401"
                     /geo_loc_name="Norway: near Farsund (production area 1)"
                     /collection_date="2016"
WGS         JAJQXR010000001-JAJQXR010000100
WGS_SCAFLD  NZ_JAJQXR010000001-NZ_JAJQXR010000100
//
LOCUS       NZ_JBRRBO010000000   4506395 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN240, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRBO000000000
VERSION     NZ_JBRRBO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030182
            Assembly: GCF_056756175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN240
  ORGANISM  Stenotrophomonas sp. STEN240
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4506395)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4506395)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBO000000000.1.
            The Stenotrophomonas sp. STEN240 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBO000000000.  This version of the
            project (01) has the accession number NZ_JBRRBO010000000, and
            consists of sequences JBRRBO010000001-JBRRBO010000099.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 13.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:38:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,889
            CDSs (total)                      :: 3,821
            Genes (coding)                    :: 3,786
            CDSs (with protein)               :: 3,786
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 5 of 35
            Pseudo Genes (incomplete)         :: 33 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 5 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4506395
                     /organism="Stenotrophomonas sp. STEN240"
                     /mol_type="genomic DNA"
                     /strain="STEN240"
                     /isolation_source="River"
                     /db_xref="taxon:3466910"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBO010000001-JBRRBO010000099
WGS_SCAFLD  NZ_JBRRBO010000001-NZ_JBRRBO010000099
//
LOCUS       NZ_JAJQXT010000000   3374571 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum maritimum strain NVIB-2096, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJQXT000000000
VERSION     NZ_JAJQXT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23968584
            Assembly: GCF_021246085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum maritimum
  ORGANISM  Tenacibaculum maritimum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 3374571)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Draft genome sequences of 13 Tenacibaculum maritimum isolates from
            farmed Norwegian lumpfish, Cyclopterus lumpus and turbot,
            Scophthalmus maximus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3374571)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2021) Fish Health Research Group, Norwegian
            Veterinary Institute, Elizabeth Stephansens vei 1, Aas 1431, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJQXT000000000.1.
            The Tenacibaculum maritimum whole genome shotgun (WGS) project has
            the project accession NZ_JAJQXT000000000.  This version of the
            project (01) has the accession number NZ_JAJQXT010000000, and
            consists of sequences JAJQXT010000001-JAJQXT010000205.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021246085.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,169
            CDSs (total)                      :: 3,118
            Genes (coding)                    :: 3,028
            CDSs (with protein)               :: 3,028
            Genes (RNA)                       :: 51
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 9 of 90
            Pseudo Genes (incomplete)         :: 75 of 90
            Pseudo Genes (internal stop)      :: 13 of 90
            Pseudo Genes (multiple problems)  :: 6 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3374571
                     /organism="Tenacibaculum maritimum"
                     /mol_type="genomic DNA"
                     /strain="NVIB-2096"
                     /host="Cyclopterus lumpus (Linnaeus, 1758)"
                     /db_xref="taxon:107401"
                     /geo_loc_name="Norway: near Stord (production area 3)"
                     /collection_date="2017"
WGS         JAJQXT010000001-JAJQXT010000205
WGS_SCAFLD  NZ_JAJQXT010000001-NZ_JAJQXT010000205
//
LOCUS       NZ_JAJQXP010000000   3219694 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum maritimum strain NVIB-1499, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJQXP000000000
VERSION     NZ_JAJQXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23968580
            Assembly: GCF_021246125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum maritimum
  ORGANISM  Tenacibaculum maritimum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 3219694)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Draft genome sequences of 13 Tenacibaculum maritimum isolates from
            farmed Norwegian lumpfish, Cyclopterus lumpus and turbot,
            Scophthalmus maximus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3219694)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2021) Fish Health Research Group, Norwegian
            Veterinary Institute, Elizabeth Stephansens vei 1, Aas 1431, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJQXP000000000.1.
            The Tenacibaculum maritimum whole genome shotgun (WGS) project has
            the project accession NZ_JAJQXP000000000.  This version of the
            project (01) has the accession number NZ_JAJQXP010000000, and
            consists of sequences JAJQXP010000001-JAJQXP010000120.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 73x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021246125.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:04:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,934
            CDSs (total)                      :: 2,887
            Genes (coding)                    :: 2,836
            CDSs (with protein)               :: 2,836
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 12 of 51
            Pseudo Genes (incomplete)         :: 43 of 51
            Pseudo Genes (internal stop)      :: 5 of 51
            Pseudo Genes (multiple problems)  :: 8 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219694
                     /organism="Tenacibaculum maritimum"
                     /mol_type="genomic DNA"
                     /strain="NVIB-1499"
                     /isolation_source="jaw"
                     /host="Scophthalmus maximus (Linnaeus, 1758)"
                     /db_xref="taxon:107401"
                     /geo_loc_name="Norway: near Farsund (production area 1)"
                     /collection_date="2016"
WGS         JAJQXP010000001-JAJQXP010000120
WGS_SCAFLD  NZ_JAJQXP010000001-NZ_JAJQXP010000120
//
LOCUS       NZ_JBRRBV010000000   4178588 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN225, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRBV000000000
VERSION     NZ_JBRRBV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030167
            Assembly: GCF_056756445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN225
  ORGANISM  Stenotrophomonas sp. STEN225
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4178588)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4178588)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBV000000000.1.
            The Stenotrophomonas sp. STEN225 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBV000000000.  This version of the
            project (01) has the accession number NZ_JBRRBV010000000, and
            consists of sequences JBRRBV010000001-JBRRBV010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756445.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:35:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,802
            CDSs (total)                      :: 3,719
            Genes (coding)                    :: 3,700
            CDSs (with protein)               :: 3,700
            Genes (RNA)                       :: 83
            rRNAs                             :: 6, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 2 (5S, 16S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 2 of 19
            Pseudo Genes (incomplete)         :: 16 of 19
            Pseudo Genes (internal stop)      :: 2 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4178588
                     /organism="Stenotrophomonas sp. STEN225"
                     /mol_type="genomic DNA"
                     /strain="STEN225"
                     /isolation_source="River"
                     /db_xref="taxon:3466908"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBV010000001-JBRRBV010000049
WGS_SCAFLD  NZ_JBRRBV010000001-NZ_JBRRBV010000049
//
LOCUS       NZ_JAJQXO010000000   3228267 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum maritimum strain NVIB-1498, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJQXO000000000
VERSION     NZ_JAJQXO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23968579
            Assembly: GCF_021246135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum maritimum
  ORGANISM  Tenacibaculum maritimum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 3228267)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Draft genome sequences of 13 Tenacibaculum maritimum isolates from
            farmed Norwegian lumpfish, Cyclopterus lumpus and turbot,
            Scophthalmus maximus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3228267)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2021) Fish Health Research Group, Norwegian
            Veterinary Institute, Elizabeth Stephansens vei 1, Aas 1431, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJQXO000000000.1.
            The Tenacibaculum maritimum whole genome shotgun (WGS) project has
            the project accession NZ_JAJQXO000000000.  This version of the
            project (01) has the accession number NZ_JAJQXO010000000, and
            consists of sequences JAJQXO010000001-JAJQXO010000081.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021246135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:04:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,925
            CDSs (total)                      :: 2,874
            Genes (coding)                    :: 2,833
            CDSs (with protein)               :: 2,833
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 11 of 41
            Pseudo Genes (incomplete)         :: 34 of 41
            Pseudo Genes (internal stop)      :: 5 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3228267
                     /organism="Tenacibaculum maritimum"
                     /mol_type="genomic DNA"
                     /strain="NVIB-1498"
                     /isolation_source="jaw"
                     /host="Scophthalmus maximus (Linnaeus, 1758)"
                     /db_xref="taxon:107401"
                     /geo_loc_name="Norway: near Farsund (production area 1)"
                     /collection_date="2016"
WGS         JAJQXO010000001-JAJQXO010000081
WGS_SCAFLD  NZ_JAJQXO010000001-NZ_JAJQXO010000081
//
LOCUS       NZ_JAJQXS010000000   3216229 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum maritimum strain NVIB-1502, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJQXS000000000
VERSION     NZ_JAJQXS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23968583
            Assembly: GCF_021246285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum maritimum
  ORGANISM  Tenacibaculum maritimum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 3216229)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Draft genome sequences of 13 Tenacibaculum maritimum isolates from
            farmed Norwegian lumpfish, Cyclopterus lumpus and turbot,
            Scophthalmus maximus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3216229)
  AUTHORS   Spilsberg,B., Nilsen,H.K., Gulla,S., Lagesen,K., Olsen,A.B. and
            Colquhoun,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2021) Fish Health Research Group, Norwegian
            Veterinary Institute, Elizabeth Stephansens vei 1, Aas 1431, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJQXS000000000.1.
            The Tenacibaculum maritimum whole genome shotgun (WGS) project has
            the project accession NZ_JAJQXS000000000.  This version of the
            project (01) has the accession number NZ_JAJQXS010000000, and
            consists of sequences JAJQXS010000001-JAJQXS010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021246285.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:03:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,922
            CDSs (total)                      :: 2,871
            Genes (coding)                    :: 2,832
            CDSs (with protein)               :: 2,832
            Genes (RNA)                       :: 51
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 12 of 39
            Pseudo Genes (incomplete)         :: 31 of 39
            Pseudo Genes (internal stop)      :: 5 of 39
            Pseudo Genes (multiple problems)  :: 8 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216229
                     /organism="Tenacibaculum maritimum"
                     /mol_type="genomic DNA"
                     /strain="NVIB-1502"
                     /isolation_source="jaw"
                     /host="Scophthalmus maximus (Linnaeus, 1758)"
                     /db_xref="taxon:107401"
                     /geo_loc_name="Norway: near Farsund (production area 1)"
                     /collection_date="2016"
WGS         JAJQXS010000001-JAJQXS010000117
WGS_SCAFLD  NZ_JAJQXS010000001-NZ_JAJQXS010000117
//
LOCUS       NZ_JBRRCG010000000   4105134 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN147, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRCG000000000
VERSION     NZ_JBRRCG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030089
            Assembly: GCF_056757995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN147
  ORGANISM  Stenotrophomonas sp. STEN147
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4105134)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4105134)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCG000000000.1.
            The Stenotrophomonas sp. STEN147 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCG000000000.  This version of the
            project (01) has the accession number NZ_JBRRCG010000000, and
            consists of sequences JBRRCG010000001-JBRRCG010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056757995.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:54:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,715
            CDSs (total)                      :: 3,632
            Genes (coding)                    :: 3,617
            CDSs (with protein)               :: 3,617
            Genes (RNA)                       :: 83
            rRNAs                             :: 5, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 4 (5S, 16S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 6 of 15
            Pseudo Genes (incomplete)         :: 11 of 15
            Pseudo Genes (internal stop)      :: 0 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4105134
                     /organism="Stenotrophomonas sp. STEN147"
                     /mol_type="genomic DNA"
                     /strain="STEN147"
                     /isolation_source="Park"
                     /db_xref="taxon:3466907"
                     /geo_loc_name="Fiji"
                     /collection_date="2021"
WGS         JBRRCG010000001-JBRRCG010000044
WGS_SCAFLD  NZ_JBRRCG010000001-NZ_JBRRCG010000044
//
LOCUS       NZ_JBRRCR010000000   4485854 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN087, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRCR000000000
VERSION     NZ_JBRRCR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030029
            Assembly: GCF_056759115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN087
  ORGANISM  Stenotrophomonas sp. STEN087
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4485854)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4485854)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCR000000000.1.
            The Stenotrophomonas sp. STEN087 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCR000000000.  This version of the
            project (01) has the accession number NZ_JBRRCR010000000, and
            consists of sequences JBRRCR010000001-JBRRCR010000179.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11.8x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:23:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,104
            CDSs (total)                      :: 4,028
            Genes (coding)                    :: 3,999
            CDSs (with protein)               :: 3,999
            Genes (RNA)                       :: 76
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 10 of 29
            Pseudo Genes (incomplete)         :: 17 of 29
            Pseudo Genes (internal stop)      :: 4 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4485854
                     /organism="Stenotrophomonas sp. STEN087"
                     /mol_type="genomic DNA"
                     /strain="STEN087"
                     /isolation_source="River"
                     /db_xref="taxon:3466906"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCR010000001-JBRRCR010000179
WGS_SCAFLD  NZ_JBRRCR010000001-NZ_JBRRCR010000179
//
LOCUS       NZ_JAAGMZ010000000   7742387 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces rochei strain SID8161, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAGMZ000000000
VERSION     NZ_JAAGMZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919572
            Assembly: GCF_010550405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces rochei
  ORGANISM  Streptomyces rochei
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces
            rochei group.
REFERENCE   1  (bases 1 to 7742387)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Insect and environment-associated Actinomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7742387)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Bacteriology, University of Wisconsin
            Madiso, 1550 Linden Drive, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGMZ000000000.1.
            The Streptomyces rochei whole genome shotgun (WGS) project has the
            project accession NZ_JAAGMZ000000000.  This version of the project
            (01) has the accession number NZ_JAAGMZ010000000, and consists of
            sequences JAAGMZ010000001-JAAGMZ010001642.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Ray v. 2.3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 188.61x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010550405.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:11:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8,014
            CDSs (total)                      :: 7,922
            Genes (coding)                    :: 7,163
            CDSs (with protein)               :: 7,163
            Genes (RNA)                       :: 92
            rRNAs                             :: 6, 7, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 16S)
            partial rRNAs                     :: 6, 8 (16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 759
            CDSs (without protein)            :: 759
            Pseudo Genes (ambiguous residues) :: 0 of 759
            Pseudo Genes (frameshifted)       :: 42 of 759
            Pseudo Genes (incomplete)         :: 732 of 759
            Pseudo Genes (internal stop)      :: 5 of 759
            Pseudo Genes (multiple problems)  :: 19 of 759
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7742387
                     /organism="Streptomyces rochei"
                     /mol_type="genomic DNA"
                     /strain="SID8161"
                     /host="honey bee"
                     /db_xref="taxon:1928"
                     /geo_loc_name="USA: Hawaii"
                     /collection_date="2015-02-23"
WGS         JAAGMZ010000001-JAAGMZ010001642
WGS_SCAFLD  NZ_JAAGMZ010000001-NZ_JAAGMZ010001642
//
LOCUS       NZ_JBRRDR010000000   4587002 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN046, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRDR000000000
VERSION     NZ_JBRRDR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029988
            Assembly: GCF_056759755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN046
  ORGANISM  Stenotrophomonas sp. STEN046
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4587002)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4587002)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDR000000000.1.
            The Stenotrophomonas sp. STEN046 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDR000000000.  This version of the
            project (01) has the accession number NZ_JBRRDR010000000, and
            consists of sequences JBRRDR010000001-JBRRDR010000097.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 14x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759755.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:26:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,176
            CDSs (total)                      :: 4,101
            Genes (coding)                    :: 4,072
            CDSs (with protein)               :: 4,072
            Genes (RNA)                       :: 75
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 6 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 7 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 4 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4587002
                     /organism="Stenotrophomonas sp. STEN046"
                     /mol_type="genomic DNA"
                     /strain="STEN046"
                     /isolation_source="Wetland"
                     /db_xref="taxon:3466901"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDR010000001-JBRRDR010000097
WGS_SCAFLD  NZ_JBRRDR010000001-NZ_JBRRDR010000097
//
LOCUS       NZ_JAAGLK010000000   8286260 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces anulatus strain SID10689, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAGLK000000000
VERSION     NZ_JAAGLK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919650
            Assembly: GCF_010548045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces anulatus
  ORGANISM  Streptomyces anulatus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces.
REFERENCE   1  (bases 1 to 8286260)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Insect and environment-associated Actinomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8286260)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Bacteriology, University of Wisconsin
            Madiso, 1550 Linden Drive, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGLK000000000.1.
            The Streptomyces anulatus whole genome shotgun (WGS) project has
            the project accession NZ_JAAGLK000000000.  This version of the
            project (01) has the accession number NZ_JAAGLK010000000, and
            consists of sequences JAAGLK010000001-JAAGLK010000426.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Ray v. 2.3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123.64x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010548045.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:16:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,389
            CDSs (total)                      :: 7,299
            Genes (coding)                    :: 7,032
            CDSs (with protein)               :: 7,032
            Genes (RNA)                       :: 90
            rRNAs                             :: 7, 6, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 6 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 267
            CDSs (without protein)            :: 267
            Pseudo Genes (ambiguous residues) :: 0 of 267
            Pseudo Genes (frameshifted)       :: 36 of 267
            Pseudo Genes (incomplete)         :: 247 of 267
            Pseudo Genes (internal stop)      :: 8 of 267
            Pseudo Genes (multiple problems)  :: 22 of 267
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8286260
                     /organism="Streptomyces anulatus"
                     /mol_type="genomic DNA"
                     /strain="SID10689"
                     /host="Dictyoptera"
                     /db_xref="taxon:1892"
                     /geo_loc_name="USA: Florida"
                     /collection_date="2014-04-25"
WGS         JAAGLK010000001-JAAGLK010000426
WGS_SCAFLD  NZ_JAAGLK010000001-NZ_JAAGLK010000426
//
LOCUS       NZ_JBRRCU010000000   4387099 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN083, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRCU000000000
VERSION     NZ_JBRRCU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030025
            Assembly: GCF_056759195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN083
  ORGANISM  Stenotrophomonas sp. STEN083
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4387099)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4387099)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRCU000000000.1.
            The Stenotrophomonas sp. STEN083 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRCU000000000.  This version of the
            project (01) has the accession number NZ_JBRRCU010000000, and
            consists of sequences JBRRCU010000001-JBRRCU010000135.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759195.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:20:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,841
            CDSs (total)                      :: 3,776
            Genes (coding)                    :: 3,748
            CDSs (with protein)               :: 3,748
            Genes (RNA)                       :: 65
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 9 of 28
            Pseudo Genes (incomplete)         :: 21 of 28
            Pseudo Genes (internal stop)      :: 2 of 28
            Pseudo Genes (multiple problems)  :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4387099
                     /organism="Stenotrophomonas sp. STEN083"
                     /mol_type="genomic DNA"
                     /strain="STEN083"
                     /isolation_source="River"
                     /db_xref="taxon:3466905"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRCU010000001-JBRRCU010000135
WGS_SCAFLD  NZ_JBRRCU010000001-NZ_JBRRCU010000135
//
LOCUS       NZ_JAAGMS010000000   8423833 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces anulatus strain SID7903, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAGMS000000000
VERSION     NZ_JAAGMS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919582
            Assembly: GCF_010548705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces anulatus
  ORGANISM  Streptomyces anulatus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces.
REFERENCE   1  (bases 1 to 8423833)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Insect and environment-associated Actinomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8423833)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Bacteriology, University of Wisconsin
            Madiso, 1550 Linden Drive, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGMS000000000.1.
            The Streptomyces anulatus whole genome shotgun (WGS) project has
            the project accession NZ_JAAGMS000000000.  This version of the
            project (01) has the accession number NZ_JAAGMS010000000, and
            consists of sequences JAAGMS010000001-JAAGMS010000415.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Ray v. 2.3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 112.71x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010548705.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:16:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,568
            CDSs (total)                      :: 7,480
            Genes (coding)                    :: 7,214
            CDSs (with protein)               :: 7,214
            Genes (RNA)                       :: 88
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 5 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 266
            CDSs (without protein)            :: 266
            Pseudo Genes (ambiguous residues) :: 0 of 266
            Pseudo Genes (frameshifted)       :: 29 of 266
            Pseudo Genes (incomplete)         :: 255 of 266
            Pseudo Genes (internal stop)      :: 6 of 266
            Pseudo Genes (multiple problems)  :: 23 of 266
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8423833
                     /organism="Streptomyces anulatus"
                     /mol_type="genomic DNA"
                     /strain="SID7903"
                     /host="mushroom"
                     /db_xref="taxon:1892"
                     /geo_loc_name="USA: Hawaii"
                     /collection_date="2015-02-19"
WGS         JAAGMS010000001-JAAGMS010000415
WGS_SCAFLD  NZ_JAAGMS010000001-NZ_JAAGMS010000415
//
LOCUS       NZ_JBRRDL010000000   4092254 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN056, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRDL000000000
VERSION     NZ_JBRRDL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029998
            Assembly: GCF_056759635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN056
  ORGANISM  Stenotrophomonas sp. STEN056
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4092254)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4092254)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRDL000000000.1.
            The Stenotrophomonas sp. STEN056 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRDL000000000.  This version of the
            project (01) has the accession number NZ_JBRRDL010000000, and
            consists of sequences JBRRDL010000001-JBRRDL010000079.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 5.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056759635.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:18:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,615
            CDSs (total)                      :: 3,551
            Genes (coding)                    :: 3,520
            CDSs (with protein)               :: 3,520
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 5 of 31
            Pseudo Genes (incomplete)         :: 29 of 31
            Pseudo Genes (internal stop)      :: 3 of 31
            Pseudo Genes (multiple problems)  :: 6 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4092254
                     /organism="Stenotrophomonas sp. STEN056"
                     /mol_type="genomic DNA"
                     /strain="STEN056"
                     /isolation_source="Wetland"
                     /db_xref="taxon:3466903"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRRDL010000001-JBRRDL010000079
WGS_SCAFLD  NZ_JBRRDL010000001-NZ_JBRRDL010000079
//
LOCUS       NZ_JAAGNH010000000   8142247 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces anulatus strain SID9598, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAGNH000000000
VERSION     NZ_JAAGNH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919559
            Assembly: GCF_010550525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces anulatus
  ORGANISM  Streptomyces anulatus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces.
REFERENCE   1  (bases 1 to 8142247)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Insect and environment-associated Actinomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8142247)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Bacteriology, University of Wisconsin
            Madiso, 1550 Linden Drive, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGNH000000000.1.
            The Streptomyces anulatus whole genome shotgun (WGS) project has
            the project accession NZ_JAAGNH000000000.  This version of the
            project (01) has the accession number NZ_JAAGNH010000000, and
            consists of sequences JAAGNH010000001-JAAGNH010001440.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Ray v. 2.3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 137.61x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010550525.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:19:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8,052
            CDSs (total)                      :: 7,961
            Genes (coding)                    :: 7,299
            CDSs (with protein)               :: 7,299
            Genes (RNA)                       :: 91
            rRNAs                             :: 7, 6, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 6 (16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 662
            CDSs (without protein)            :: 662
            Pseudo Genes (ambiguous residues) :: 0 of 662
            Pseudo Genes (frameshifted)       :: 27 of 662
            Pseudo Genes (incomplete)         :: 654 of 662
            Pseudo Genes (internal stop)      :: 5 of 662
            Pseudo Genes (multiple problems)  :: 23 of 662
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8142247
                     /organism="Streptomyces anulatus"
                     /mol_type="genomic DNA"
                     /strain="SID9598"
                     /host="Fungi"
                     /db_xref="taxon:1892"
                     /geo_loc_name="USA: Hawaii"
                     /collection_date="2015-02-19"
WGS         JAAGNH010000001-JAAGNH010001440
WGS_SCAFLD  NZ_JAAGNH010000001-NZ_JAAGNH010001440
//
LOCUS       NZ_JBRRBU010000000   4101585 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN228, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRRBU000000000
VERSION     NZ_JBRRBU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52030170
            Assembly: GCF_056756415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN228
  ORGANISM  Stenotrophomonas sp. STEN228
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4101585)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4101585)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRRBU000000000.1.
            The Stenotrophomonas sp. STEN228 whole genome shotgun (WGS) project
            has the project accession NZ_JBRRBU000000000.  This version of the
            project (01) has the accession number NZ_JBRRBU010000000, and
            consists of sequences JBRRBU010000001-JBRRBU010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 18.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056756415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:36:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,731
            CDSs (total)                      :: 3,652
            Genes (coding)                    :: 3,635
            CDSs (with protein)               :: 3,635
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 5 of 17
            Pseudo Genes (incomplete)         :: 12 of 17
            Pseudo Genes (internal stop)      :: 3 of 17
            Pseudo Genes (multiple problems)  :: 3 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4101585
                     /organism="Stenotrophomonas sp. STEN228"
                     /mol_type="genomic DNA"
                     /strain="STEN228"
                     /isolation_source="River"
                     /db_xref="taxon:3466909"
                     /geo_loc_name="Australia"
                     /collection_date="2021"
WGS         JBRRBU010000001-JBRRBU010000052
WGS_SCAFLD  NZ_JBRRBU010000001-NZ_JBRRBU010000052
//
LOCUS       NZ_JAAGMK010000000   8240482 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces anulatus strain SID505, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAGMK000000000
VERSION     NZ_JAAGMK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919592
            Assembly: GCF_010548615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces anulatus
  ORGANISM  Streptomyces anulatus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces.
REFERENCE   1  (bases 1 to 8240482)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Insect and environment-associated Actinomycetes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8240482)
  AUTHORS   Currrie,C., Chevrette,M., Carlson,C., Stubbendieck,R. and
            Wendt-Pienkowski,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Bacteriology, University of Wisconsin
            Madiso, 1550 Linden Drive, Madison, WI 53706, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGMK000000000.1.
            The Streptomyces anulatus whole genome shotgun (WGS) project has
            the project accession NZ_JAAGMK000000000.  This version of the
            project (01) has the accession number NZ_JAAGMK010000000, and
            consists of sequences JAAGMK010000001-JAAGMK010001117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Ray v. 2.3.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 134.5x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010548615.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:17:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,911
            CDSs (total)                      :: 7,825
            Genes (coding)                    :: 7,301
            CDSs (with protein)               :: 7,301
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 5 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 524
            CDSs (without protein)            :: 524
            Pseudo Genes (ambiguous residues) :: 0 of 524
            Pseudo Genes (frameshifted)       :: 29 of 524
            Pseudo Genes (incomplete)         :: 509 of 524
            Pseudo Genes (internal stop)      :: 2 of 524
            Pseudo Genes (multiple problems)  :: 16 of 524
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8240482
                     /organism="Streptomyces anulatus"
                     /mol_type="genomic DNA"
                     /strain="SID505"
                     /host="Dictyoptera"
                     /db_xref="taxon:1892"
                     /geo_loc_name="USA: Florida"
                     /collection_date="2014-05-23"
WGS         JAAGMK010000001-JAAGMK010001117
WGS_SCAFLD  NZ_JAAGMK010000001-NZ_JAAGMK010001117
//
LOCUS       NZ_JAKNYR010000000   4038504 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio aestuarianus strain U18, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNYR000000000
VERSION     NZ_JAKNYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25608697
            Assembly: GCF_028858475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio aestuarianus
  ORGANISM  Vibrio aestuarianus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4038504)
  AUTHORS   Mesnil,A. and Travers,M.-A.
  TITLE     Emergence and expansion in Europe of a Vibrio aestuarianus clonal
            complex pathogenic for oysters
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4038504)
  AUTHORS   Mesnil,A. and Travers,M.-A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2022) LGPMM, IFREMER, avenue de Mus de Loup, La
            Tremblade 17390, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNYR000000000.1.
            The Vibrio aestuarianus whole genome shotgun (WGS) project has the
            project accession NZ_JAKNYR000000000.  This version of the project
            (01) has the accession number NZ_JAKNYR010000000, and consists of
            sequences JAKNYR010000001-JAKNYR010000130.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028858475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:49:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,682
            CDSs (total)                      :: 3,618
            Genes (coding)                    :: 3,370
            CDSs (with protein)               :: 3,370
            Genes (RNA)                       :: 64
            rRNAs                             :: 5, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 248
            CDSs (without protein)            :: 248
            Pseudo Genes (ambiguous residues) :: 0 of 248
            Pseudo Genes (frameshifted)       :: 155 of 248
            Pseudo Genes (incomplete)         :: 100 of 248
            Pseudo Genes (internal stop)      :: 23 of 248
            Pseudo Genes (multiple problems)  :: 26 of 248
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4038504
                     /organism="Vibrio aestuarianus"
                     /mol_type="genomic DNA"
                     /strain="U18"
                     /isolation_source="Zooplancton"
                     /db_xref="taxon:28171"
                     /geo_loc_name="Italy"
                     /collection_date="2012"
                     /collected_by="UNIGE"
WGS         JAKNYR010000001-JAKNYR010000130
WGS_SCAFLD  NZ_JAKNYR010000001-NZ_JAKNYR010000130
//
LOCUS       NZ_JBMFZR010000000   2752994 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum finnmarkense strain LB-P5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFZR000000000
VERSION     NZ_JBMFZR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47468122
            Assembly: GCF_049309765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum finnmarkense
  ORGANISM  Tenacibaculum finnmarkense
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 2752994)
  AUTHORS   Avendano-Herrera,R. and Saldarriaga-Cordoba,M.
  TITLE     Draft genome for Tenacibaculum finnmarkense isolates from diseased
            Atlantic salmon (Salmo salar) in Chilean farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2752994)
  AUTHORS   Avendano-Herrera,R. and Saldarriaga-Cordoba,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2025) Laboratorio de Patologia de Organismos
            Acuaticos y Biotecnologia Acuicola, Universidad Andres Bello,
            Quillota 980, Vina del Mar 2531015, Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFZR000000000.1.
            The Tenacibaculum finnmarkense whole genome shotgun (WGS) project
            has the project accession NZ_JBMFZR000000000.  This version of the
            project (01) has the accession number NZ_JBMFZR010000000, and
            consists of sequences JBMFZR010000001-JBMFZR010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.0.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049309765.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:28:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,403
            CDSs (total)                      :: 2,353
            Genes (coding)                    :: 2,350
            CDSs (with protein)               :: 2,350
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 1 of 3
            Pseudo Genes (incomplete)         :: 3 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            Pseudo Genes (multiple problems)  :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752994
                     /organism="Tenacibaculum finnmarkense"
                     /mol_type="genomic DNA"
                     /strain="LB-P5"
                     /isolation_source="skin lesion"
                     /host="Salmo salar"
                     /db_xref="taxon:2781243"
                     /geo_loc_name="Chile: Aysn"
                     /collection_date="2017-07-15"
                     /collected_by="Ruben Avendano-Herrera, Rute Irgang"
WGS         JBMFZR010000001-JBMFZR010000056
WGS_SCAFLD  NZ_JBMFZR010000001-NZ_JBMFZR010000056
//
LOCUS       NZ_JBMFZS010000000   2800552 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum finnmarkense strain P3-BQB, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMFZS000000000
VERSION     NZ_JBMFZS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47468123
            Assembly: GCF_049309785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum finnmarkense
  ORGANISM  Tenacibaculum finnmarkense
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 2800552)
  AUTHORS   Avendano-Herrera,R. and Saldarriaga-Cordoba,M.
  TITLE     Draft genome for Tenacibaculum finnmarkense isolates from diseased
            Atlantic salmon (Salmo salar) in Chilean farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2800552)
  AUTHORS   Avendano-Herrera,R. and Saldarriaga-Cordoba,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2025) Laboratorio de Patologia de Organismos
            Acuaticos y Biotecnologia Acuicola, Universidad Andres Bello,
            Quillota 980, Vina del Mar 2531015, Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMFZS000000000.1.
            The Tenacibaculum finnmarkense whole genome shotgun (WGS) project
            has the project accession NZ_JBMFZS000000000.  This version of the
            project (01) has the accession number NZ_JBMFZS010000000, and
            consists of sequences JBMFZS010000001-JBMFZS010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.0.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049309785.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:32:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,473
            CDSs (total)                      :: 2,421
            Genes (coding)                    :: 2,413
            CDSs (with protein)               :: 2,413
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 8
            CDSs (without protein)            :: 8
            Pseudo Genes (ambiguous residues) :: 0 of 8
            Pseudo Genes (frameshifted)       :: 2 of 8
            Pseudo Genes (incomplete)         :: 7 of 8
            Pseudo Genes (internal stop)      :: 2 of 8
            Pseudo Genes (multiple problems)  :: 2 of 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2800552
                     /organism="Tenacibaculum finnmarkense"
                     /mol_type="genomic DNA"
                     /strain="P3-BQB"
                     /isolation_source="gills"
                     /host="Salmo salar"
                     /db_xref="taxon:2781243"
                     /geo_loc_name="Chile: Chaitn"
                     /collection_date="2018-06-03"
                     /collected_by="Ruben Avendano-Herrera, Rute Irgang"
WGS         JBMFZS010000001-JBMFZS010000055
WGS_SCAFLD  NZ_JBMFZS010000001-NZ_JBMFZS010000055
//
LOCUS       NZ_CEVZQD010000000   2013641 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Varibaculum cambriense isolate DRR171622_bin_25086, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEVZQD000000000
VERSION     NZ_CEVZQD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089417
            Sequence Read Archive: DRR171622
            Assembly: GCF_982412955.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Varibaculum cambriense (human gut metagenome)
  ORGANISM  Varibaculum cambriense
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Actinomycetales; Actinomycetaceae; Varibaculum.
REFERENCE   1  (bases 1 to 2013641)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZQD000000000.1.
            The Varibaculum cambriense whole genome shotgun (WGS) project has
            the project accession NZ_CEVZQD000000000.  This version of the
            project (01) has the accession number NZ_CEVZQD010000000, and
            consists of sequences CEVZQD010000001-CEVZQD010000196.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171622.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982412955.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:03:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,841
            CDSs (total)                      :: 1,793
            Genes (coding)                    :: 1,738
            CDSs (with protein)               :: 1,738
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 2 of 55
            Pseudo Genes (incomplete)         :: 53 of 55
            Pseudo Genes (internal stop)      :: 1 of 55
            Pseudo Genes (multiple problems)  :: 1 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013641
                     /organism="Varibaculum cambriense"
                     /mol_type="genomic DNA"
                     /isolate="DRR171622_bin_25086"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:184870"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZQD010000001-CEVZQD010000196
WGS_SCAFLD  NZ_CEVZQD010000001-NZ_CEVZQD010000196
//
LOCUS       NZ_CEWCST010000000   2403069 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Sutterella sp. isolate DRR171861_bin_18079, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWCST000000000
VERSION     NZ_CEWCST000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091269
            Sequence Read Archive: DRR171861
            Assembly: GCF_982433915.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Sutterella sp. (human gut metagenome)
  ORGANISM  Sutterella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Sutterellaceae; Sutterella.
REFERENCE   1  (bases 1 to 2403069)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCST000000000.1.
            The Sutterella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWCST000000000.  This version of the project
            (01) has the accession number NZ_CEWCST010000000, and consists of
            sequences CEWCST010000001-CEWCST010000075.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171861.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982433915.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:12:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,183
            CDSs (total)                      :: 2,132
            Genes (coding)                    :: 2,100
            CDSs (with protein)               :: 2,100
            Genes (RNA)                       :: 51
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 6 of 32
            Pseudo Genes (incomplete)         :: 23 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 1 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403069
                     /organism="Sutterella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171861_bin_18079"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1981025"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCST010000001-CEWCST010000075
WGS_SCAFLD  NZ_CEWCST010000001-NZ_CEWCST010000075
//
LOCUS       NZ_CEWALC010000000   1975794 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Streptococcus vestibularis isolate DRR171703_bin_17240, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWALC000000000
VERSION     NZ_CEWALC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122090133
            Sequence Read Archive: DRR171703
            Assembly: GCF_982418545.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Streptococcus vestibularis (human gut metagenome)
  ORGANISM  Streptococcus vestibularis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1975794)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWALC000000000.1.
            The Streptococcus vestibularis whole genome shotgun (WGS) project
            has the project accession NZ_CEWALC000000000.  This version of the
            project (01) has the accession number NZ_CEWALC010000000, and
            consists of sequences CEWALC010000001-CEWALC010000146.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171703.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982418545.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:50:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,014
            CDSs (total)                      :: 1,987
            Genes (coding)                    :: 1,857
            CDSs (with protein)               :: 1,857
            Genes (RNA)                       :: 27
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 51 of 130
            Pseudo Genes (incomplete)         :: 80 of 130
            Pseudo Genes (internal stop)      :: 48 of 130
            Pseudo Genes (multiple problems)  :: 39 of 130
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975794
                     /organism="Streptococcus vestibularis"
                     /mol_type="genomic DNA"
                     /isolate="DRR171703_bin_17240"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1343"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWALC010000001-CEWALC010000146
WGS_SCAFLD  NZ_CEWALC010000001-NZ_CEWALC010000146
//
LOCUS       NZ_CEWCUC010000000   2793459 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Sutterella wadsworthensis isolate DRR171877_bin_7423, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWCUC000000000
VERSION     NZ_CEWCUC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091381
            Sequence Read Archive: DRR171877
            Assembly: GCF_982434265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Sutterella wadsworthensis (human gut metagenome)
  ORGANISM  Sutterella wadsworthensis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Sutterellaceae; Sutterella.
REFERENCE   1  (bases 1 to 2793459)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCUC000000000.1.
            The Sutterella wadsworthensis whole genome shotgun (WGS) project
            has the project accession NZ_CEWCUC000000000.  This version of the
            project (01) has the accession number NZ_CEWCUC010000000, and
            consists of sequences CEWCUC010000001-CEWCUC010000046.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171877.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982434265.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:28:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,312
            CDSs (total)                      :: 2,254
            Genes (coding)                    :: 2,231
            CDSs (with protein)               :: 2,231
            Genes (RNA)                       :: 58
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 3 of 23
            Pseudo Genes (incomplete)         :: 17 of 23
            Pseudo Genes (internal stop)      :: 8 of 23
            Pseudo Genes (multiple problems)  :: 3 of 23
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2793459
                     /organism="Sutterella wadsworthensis"
                     /mol_type="genomic DNA"
                     /isolate="DRR171877_bin_7423"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40545"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCUC010000001-CEWCUC010000046
WGS_SCAFLD  NZ_CEWCUC010000001-NZ_CEWCUC010000046
//
LOCUS       NZ_CEWCXX010000000   2007463 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Veillonella sp. isolate DRR171886_bin_115, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWCXX000000000
VERSION     NZ_CEWCXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091428
            Sequence Read Archive: DRR171886
            Assembly: GCF_982435255.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Veillonella sp. (human gut metagenome)
  ORGANISM  Veillonella sp.
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (bases 1 to 2007463)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCXX000000000.1.
            The Veillonella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWCXX000000000.  This version of the project
            (01) has the accession number NZ_CEWCXX010000000, and consists of
            sequences CEWCXX010000001-CEWCXX010000036.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171886.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982435255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:25:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,882
            CDSs (total)                      :: 1,843
            Genes (coding)                    :: 1,824
            CDSs (with protein)               :: 1,824
            Genes (RNA)                       :: 39
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 4 of 19
            Pseudo Genes (incomplete)         :: 9 of 19
            Pseudo Genes (internal stop)      :: 7 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007463
                     /organism="Veillonella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171886_bin_115"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1926307"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCXX010000001-CEWCXX010000036
WGS_SCAFLD  NZ_CEWCXX010000001-NZ_CEWCXX010000036
//
LOCUS       NZ_CEWCPF010000000   1952518 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Veillonella sp. isolate DRR171906_bin_139, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWCPF000000000
VERSION     NZ_CEWCPF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091565
            Sequence Read Archive: DRR171906
            Assembly: GCF_982432975.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Veillonella sp. (human gut metagenome)
  ORGANISM  Veillonella sp.
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (bases 1 to 1952518)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWCPF000000000.1.
            The Veillonella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWCPF000000000.  This version of the project
            (01) has the accession number NZ_CEWCPF010000000, and consists of
            sequences CEWCPF010000001-CEWCPF010000072.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171906.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982432975.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:34:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,828
            CDSs (total)                      :: 1,794
            Genes (coding)                    :: 1,781
            CDSs (with protein)               :: 1,781
            Genes (RNA)                       :: 34
            tRNAs                             :: 30
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 11 of 13
            Pseudo Genes (internal stop)      :: 1 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952518
                     /organism="Veillonella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171906_bin_139"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1926307"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWCPF010000001-CEWCPF010000072
WGS_SCAFLD  NZ_CEWCPF010000001-NZ_CEWCPF010000072
//
LOCUS       NZ_CEVYET010000000   2651131 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Sutterella sp. isolate DRR171487_bin_18382, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVYET000000000
VERSION     NZ_CEVYET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088433
            Sequence Read Archive: DRR171487
            Assembly: GCF_982403235.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Sutterella sp. (human gut metagenome)
  ORGANISM  Sutterella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Sutterellaceae; Sutterella.
REFERENCE   1  (bases 1 to 2651131)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVYET000000000.1.
            The Sutterella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEVYET000000000.  This version of the project
            (01) has the accession number NZ_CEVYET010000000, and consists of
            sequences CEVYET010000001-CEVYET010000230.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171487.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982403235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:59:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,379
            CDSs (total)                      :: 2,332
            Genes (coding)                    :: 2,286
            CDSs (with protein)               :: 2,286
            Genes (RNA)                       :: 47
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 5 of 46
            Pseudo Genes (incomplete)         :: 36 of 46
            Pseudo Genes (internal stop)      :: 6 of 46
            Pseudo Genes (multiple problems)  :: 1 of 46
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2651131
                     /organism="Sutterella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171487_bin_18382"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1981025"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVYET010000001-CEVYET010000230
WGS_SCAFLD  NZ_CEVYET010000001-NZ_CEVYET010000230
//
LOCUS       NZ_CEWABH010000000   2216438 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Veillonella sp. isolate DRR171633_bin_4045, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWABH000000000
VERSION     NZ_CEWABH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089509
            Sequence Read Archive: DRR171633
            Assembly: GCF_982415885.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Veillonella sp. (human gut metagenome)
  ORGANISM  Veillonella sp.
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (bases 1 to 2216438)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWABH000000000.1.
            The Veillonella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWABH000000000.  This version of the project
            (01) has the accession number NZ_CEWABH010000000, and consists of
            sequences CEWABH010000001-CEWABH010000075.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171633.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982415885.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:59:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,030
            CDSs (total)                      :: 1,982
            Genes (coding)                    :: 1,956
            CDSs (with protein)               :: 1,956
            Genes (RNA)                       :: 48
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 8 of 26
            Pseudo Genes (incomplete)         :: 11 of 26
            Pseudo Genes (internal stop)      :: 8 of 26
            Pseudo Genes (multiple problems)  :: 1 of 26
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216438
                     /organism="Veillonella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171633_bin_4045"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1926307"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWABH010000001-CEWABH010000075
WGS_SCAFLD  NZ_CEWABH010000001-NZ_CEWABH010000075
//
LOCUS       NZ_CEWEII010000000   2059851 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Veillonella parvula isolate DRR171674_bin_92, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWEII000000000
VERSION     NZ_CEWEII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089877
            Sequence Read Archive: DRR171674
            Assembly: GCF_982445795.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Veillonella parvula (human gut metagenome)
  ORGANISM  Veillonella parvula
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (bases 1 to 2059851)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWEII000000000.1.
            The Veillonella parvula whole genome shotgun (WGS) project has the
            project accession NZ_CEWEII000000000.  This version of the project
            (01) has the accession number NZ_CEWEII010000000, and consists of
            sequences CEWEII010000001-CEWEII010000009.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171674.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982445795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:56:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,914
            CDSs (total)                      :: 1,871
            Genes (coding)                    :: 1,859
            CDSs (with protein)               :: 1,859
            Genes (RNA)                       :: 43
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 2 of 12
            Pseudo Genes (incomplete)         :: 8 of 12
            Pseudo Genes (internal stop)      :: 2 of 12
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059851
                     /organism="Veillonella parvula"
                     /mol_type="genomic DNA"
                     /isolate="DRR171674_bin_92"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:29466"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWEII010000001-CEWEII010000009
WGS_SCAFLD  NZ_CEWEII010000001-NZ_CEWEII010000009
//
LOCUS       NZ_CEWBAZ010000000   2138590 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Veillonella sp. isolate DRR171681_bin_8517, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEWBAZ000000000
VERSION     NZ_CEWBAZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089939
            Sequence Read Archive: DRR171681
            Assembly: GCF_982422525.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Veillonella sp. (human gut metagenome)
  ORGANISM  Veillonella sp.
            Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales;
            Veillonellaceae; Veillonella.
REFERENCE   1  (bases 1 to 2138590)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWBAZ000000000.1.
            The Veillonella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CEWBAZ000000000.  This version of the project
            (01) has the accession number NZ_CEWBAZ010000000, and consists of
            sequences CEWBAZ010000001-CEWBAZ010000137.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171681.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982422525.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:04:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,022
            CDSs (total)                      :: 1,973
            Genes (coding)                    :: 1,961
            CDSs (with protein)               :: 1,961
            Genes (RNA)                       :: 49
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 10 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138590
                     /organism="Veillonella sp."
                     /mol_type="genomic DNA"
                     /isolate="DRR171681_bin_8517"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:1926307"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWBAZ010000001-CEWBAZ010000137
WGS_SCAFLD  NZ_CEWBAZ010000001-NZ_CEWBAZ010000137
//
LOCUS       NZ_JBRKUL010000000   3003147 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Tenacibaculum soleae strain 595/22, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRKUL000000000
VERSION     NZ_JBRKUL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49912473
            Assembly: GCF_056754295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Tenacibaculum soleae
  ORGANISM  Tenacibaculum soleae
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Tenacibaculum.
REFERENCE   1  (bases 1 to 3003147)
  AUTHORS   Garcia Cervera,M., Sanchez Amat,A. and Campillo Brocal,J.C.
  TITLE     Isolation and Genomic Characterization of the First Tenacibaculum
            soleae Bacteriophages
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3003147)
  AUTHORS   Campillo Brocal,J.C., Garcia Cervera,M., Mascaro Sabater,F. and
            Sanchez Amat,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2025) Genetics and Microbiology, University of
            Murcia, Campus de Espinardo, Murcia 30100, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRKUL000000000.1.
            The Tenacibaculum soleae whole genome shotgun (WGS) project has the
            project accession NZ_JBRKUL000000000.  This version of the project
            (01) has the accession number NZ_JBRKUL010000000, and consists of
            sequence JBRKUL010000001.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Microbial Biotechnology
            Research Group. University of Murcia.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 11-MAR-2025
            Assembly Method        :: Flye v. 2.9.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 106.0x
            Sequencing Technology  :: Oxford Nanopore MinION; Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754295.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:12:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,812
            CDSs (total)                      :: 2,731
            Genes (coding)                    :: 2,717
            CDSs (with protein)               :: 2,717
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 1 of 14
            Pseudo Genes (incomplete)         :: 9 of 14
            Pseudo Genes (internal stop)      :: 6 of 14
            Pseudo Genes (multiple problems)  :: 2 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003147
                     /organism="Tenacibaculum soleae"
                     /mol_type="genomic DNA"
                     /strain="595/22"
                     /isolation_source="Fish farm"
                     /host="Dicentrarchus labrax"
                     /db_xref="taxon:447689"
                     /geo_loc_name="Spain: Palma de Mallorca"
                     /lat_lon="39.544741 N 2.698955 E"
                     /collection_date="2022-12-20"
                     /collected_by="Culmarex"
WGS         JBRKUL010000001
WGS_SCAFLD  NZ_CM165260
//
LOCUS       NZ_JBPGWX010000000   5918647 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Trinickia sp. HAY1-2D, whole genome shotgun sequencing project.
ACCESSION   NZ_JBPGWX000000000
VERSION     NZ_JBPGWX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47941028
            Assembly: GCF_056754935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Trinickia sp. HAY1-2D
  ORGANISM  Trinickia sp. HAY1-2D
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Trinickia.
REFERENCE   1  (bases 1 to 5918647)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Ford,N., Tso,F.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5918647)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Zervas,A.,
            Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBPGWX000000000.1.
            The Trinickia sp. HAY1-2D whole genome shotgun (WGS) project has
            the project accession NZ_JBPGWX000000000.  This version of the
            project (01) has the accession number NZ_JBPGWX010000000, and
            consists of sequences JBPGWX010000001-JBPGWX010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 109x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056754935.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 21:31:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,427
            CDSs (total)                      :: 5,357
            Genes (coding)                    :: 5,215
            CDSs (with protein)               :: 5,215
            Genes (RNA)                       :: 70
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 0 of 142
            Pseudo Genes (frameshifted)       :: 52 of 142
            Pseudo Genes (incomplete)         :: 104 of 142
            Pseudo Genes (internal stop)      :: 4 of 142
            Pseudo Genes (multiple problems)  :: 16 of 142
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5918647
                     /organism="Trinickia sp. HAY1-2D"
                     /mol_type="genomic DNA"
                     /strain="HAY1-2D"
                     /db_xref="taxon:3416683"
                     /geo_loc_name="USA: Kansas"
                     /lat_lon="38.9543 N 95.2558 W"
                     /collection_date="2020-10-29"
WGS         JBPGWX010000001-JBPGWX010000002
WGS_SCAFLD  NZ_JBPGWX010000001-NZ_JBPGWX010000002
//
LOCUS       NZ_JZWD01000000      5099956 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio diabolicus strain TS13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JZWD00000000
VERSION     NZ_JZWD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03329625
            Assembly: GCF_000962815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio diabolicus
  ORGANISM  Vibrio diabolicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio; Vibrio diabolicus subgroup.
REFERENCE   1  (bases 1 to 5099956)
  AUTHORS   Kumari,P., Kumar,A. and Somasundaram,S.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2015) Faculty of Marine Sciences, Annamalai
            University, Parangipettai, Cuddalore, Tamil Nadu 608502, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JZWD00000000.1.
            The Vibrio diabolicus whole genome shotgun (WGS) project has the
            project accession NZ_JZWD00000000.  This version of the project
            (01) has the accession number NZ_JZWD01000000, and consists of
            sequences JZWD01000001-JZWD01000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.1
            Genome Coverage       :: 200.0x
            Sequencing Technology :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000962815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:13:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,697
            CDSs (total)                      :: 4,619
            Genes (coding)                    :: 4,564
            CDSs (with protein)               :: 4,564
            Genes (RNA)                       :: 78
            rRNAs                             :: 4, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 23 of 55
            Pseudo Genes (incomplete)         :: 39 of 55
            Pseudo Genes (internal stop)      :: 19 of 55
            Pseudo Genes (multiple problems)  :: 18 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5099956
                     /organism="Vibrio diabolicus"
                     /mol_type="genomic DNA"
                     /strain="TS13"
                     /isolation_source="Marine sediment"
                     /db_xref="taxon:50719"
                     /collection_date="2012-06-12"
WGS         JZWD01000001-JZWD01000040
WGS_SCAFLD  NZ_JZWD01000001-NZ_JZWD01000040
//
LOCUS       NZ_CEVZQY010000000   5194600 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Victivallis vadensis isolate DRR171582_bin_18857, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVZQY000000000
VERSION     NZ_CEVZQY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122089088
            Sequence Read Archive: DRR171582
            Assembly: GCF_982413145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Victivallis vadensis (human gut metagenome)
  ORGANISM  Victivallis vadensis
            Bacteria; Pseudomonadati; Lentisphaerota; Lentisphaeria;
            Victivallales; Victivallaceae; Victivallis.
REFERENCE   1  (bases 1 to 5194600)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVZQY000000000.1.
            The Victivallis vadensis whole genome shotgun (WGS) project has the
            project accession NZ_CEVZQY000000000.  This version of the project
            (01) has the accession number NZ_CEVZQY010000000, and consists of
            sequences CEVZQY010000001-CEVZQY010000403.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171582.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982413145.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 03:31:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,369
            CDSs (total)                      :: 4,320
            Genes (coding)                    :: 4,235
            CDSs (with protein)               :: 4,235
            Genes (RNA)                       :: 49
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 2 of 85
            Pseudo Genes (incomplete)         :: 82 of 85
            Pseudo Genes (internal stop)      :: 1 of 85
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5194600
                     /organism="Victivallis vadensis"
                     /mol_type="genomic DNA"
                     /isolate="DRR171582_bin_18857"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:172901"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVZQY010000001-CEVZQY010000403
WGS_SCAFLD  NZ_CEVZQY010000001-NZ_CEVZQY010000403
//
LOCUS       NZ_AJZL02000000      5272431 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus 1S-124, whole genome shotgun sequencing project.
ACCESSION   NZ_AJZL00000000
VERSION     NZ_AJZL00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470502
            Assembly: GCF_000272305.2
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus 1S-124
  ORGANISM  Vibrio splendidus 1S-124
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5272431)
  AUTHORS   Cordero,O.X., Wildschutte,H., Kirkup,B., Proehl,S., Ngo,L.,
            Hussain,F., Le Roux,F., Mincer,T. and Polz,M.F.
  TITLE     Ecological populations of bacteria act as socially cohesive units
            of antibiotic production and resistance
  JOURNAL   Science 337 (6099), 1228-1231 (2012)
   PUBMED   22955834
REFERENCE   2  (bases 1 to 5272431)
  AUTHORS   Hehemann,J.-H., Arevalo,P., Datta,M., Yu,X., Corzett,C.,
            Henschel,A., Preheim,S., Timberlake,S., Alm,E.J. and Polz,M.F.
  TITLE     Adaptive Radiation by Waves of Gene Transfer Leads to Fine-Scale
            Resource Partitioning in Marine Microbes
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 5272431)
  AUTHORS   Timberlake,S., Arevalo,P., Polz,M. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
REFERENCE   4  (bases 1 to 5272431)
  AUTHORS   Cordero,O.X. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2012) Parsons Laboratory, Civil and Environmental
            Engineering, Massachusetts Institute of Technology, 77
            Massachusetts Avenue, Cambridge, MA 02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AJZL00000000.2.
            
            On Sep 19, 2016 this sequence version replaced NZ_AJZL00000000.1.
            The Vibrio splendidus 1S-124 whole genome shotgun (WGS) project has
            the project accession NZ_AJZL00000000.  This version of the project
            (02) has the accession number NZ_AJZL02000000, and consists of
            sequences AJZL02000001-AJZL02000313.
            Source DNA available from Martin Polz, 77 Massachusetts Ave.,
            Cambridge, MA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.1.04; Maq v. 0.7.1; minimus v.
                                     2.0
            Genome Coverage       :: 52x
            Sequencing Technology :: Illumina GAII; Illumina GI
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000272305.2-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:58:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,705
            CDSs (total)                      :: 4,679
            Genes (coding)                    :: 4,601
            CDSs (with protein)               :: 4,601
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 16
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 21 of 78
            Pseudo Genes (incomplete)         :: 56 of 78
            Pseudo Genes (internal stop)      :: 12 of 78
            Pseudo Genes (multiple problems)  :: 9 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5272431
                     /organism="Vibrio splendidus 1S-124"
                     /mol_type="genomic DNA"
                     /strain="1S-124"
                     /isolation_source="filtered seawater (1um filter)"
                     /db_xref="taxon:1191313"
                     /geo_loc_name="USA: Massachusetts"
                     /collection_date="2006-04"
WGS         AJZL02000001-AJZL02000313
WGS_SCAFLD  NZ_AJZL02000001-NZ_AJZL02000313
//
LOCUS       NZ_ABCD01000000      4825390 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis CA88-4125, whole genome shotgun sequencing project.
ACCESSION   NZ_ABCD00000000
VERSION     NZ_ABCD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02403940
            Assembly: GCF_000181455.2
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis CA88-4125
  ORGANISM  Yersinia pestis CA88-4125
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4825390)
  AUTHORS   Plunkett,G. III, Anderson,B.D., Burland,V., Cabot,E.L.,
            Glasner,J.D., Mau,B., Neeno-Eckwall,E., Perna,N.T., Bruce,D.,
            Gilna,P., Green,L.D., Keim,P., Munk,A.C., Probert,W.S.,
            Vogler,A.J., Wagner,D.M. and Brettin,T.S.
  TITLE     Yersinia pestis CA88-4125 whole genome shotgun sequencing project
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4825390)
  AUTHORS   Plunkett,G. III, Anderson,B.D., Burland,V., Cabot,E.L.,
            Glasner,J.D., Mau,B., Neeno-Eckwall,E., Perna,N.T., Bruce,D.,
            Gilna,P., Green,L.D., Keim,P., Munk,A.C., Probert,W.S.,
            Vogler,A.J., Wagner,D.M. and Brettin,T.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUN-2007) Genome Center of Wisconsin, University of
            Wisconsin, Enteropathogen Resource Integration Center (ERIC-BRC),
            425G Henry Mall, Madison, WI 53706-1580, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ABCD00000000.1.
            
            On Feb 9, 2015 this sequence version replaced gi:153997704.
            The Yersinia pestis CA88-4125 whole genome shotgun (WGS) project
            has the project accession NZ_ABCD00000000.  This version of the
            project (01) has the accession number NZ_ABCD01000000, and consists
            of sequences ABCD01000001-ABCD01000008.
            Yersinia pestis CA88-4125 was originally isolated in Monterey
            County, California. This area is very close to San Francisco, where
            Yersinia pestis is first thought to have become established in
            native populations of rodents. Subsequent spread of plague to the
            rest of  the western United States probably originated from this
            region. As such, comparisons of this strain to other North American
            Y. pestis strains should provide interesting insights into how Y.
            pestis mutated as it spread across the western United States. Three
            libraries were constructed with average insert sizes of 2874 bp,
            3961 bp, and 4758 bp from which 37463, 21554, and 24262 reads were
            sequenced, respectively. This amount of sequence represents 10X
            coverage of the genome. After two rounds of autofinish sequencing,
            several scaffolds were connected by PCR end sequences and shatter
            libraries, and a number of duplications were resolved with
            transposon bombed subclones.
             Draft sequencing was performed at the Joint Genome Institute (JGI)
            production genomics facility in Walnut Creek, CA. Two rounds of
            genome finishing was performed by the JGI at Los Alamos National
            Laboratory, Los Alamos, NM. Annotation and database submission were
            carried out by  the Enteropathogen Resource Integration Center,
            Madison, WI (ERIC http://www.ericbrc.org/portal/eric), a
            Bioinformatics Resource Center supported by the NIH/NIAID.
             The NIAID funded Bioinformatics Resource Center PathoSystems
            Resource Integration Center (PATRIC; http://patricbrc.vbi.vt.edu/)
            is responsible for annotation updates of this record.
             Plasmids pCD1 and pMT1 are GenBank Accession Numbers
            CP000722-CP000723.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000181455.2-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 10:47:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,420
            CDSs (total)                      :: 4,322
            Genes (coding)                    :: 4,102
            CDSs (with protein)               :: 4,102
            Genes (RNA)                       :: 98
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 3, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 220
            CDSs (without protein)            :: 220
            Pseudo Genes (ambiguous residues) :: 0 of 220
            Pseudo Genes (frameshifted)       :: 87 of 220
            Pseudo Genes (incomplete)         :: 146 of 220
            Pseudo Genes (internal stop)      :: 21 of 220
            Pseudo Genes (multiple problems)  :: 30 of 220
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4825390
                     /organism="Yersinia pestis CA88-4125"
                     /mol_type="genomic DNA"
                     /strain="CA88-4125"
                     /db_xref="taxon:412420"
WGS         ABCD01000001-ABCD01000008
WGS_SCAFLD  CP000722-CP000723
WGS_SCAFLD  NC_009595-NC_009596
WGS_SCAFLD  NZ_ABCD01000001-NZ_ABCD01000008
//
LOCUS       NZ_PDGF01000000      5105270 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain CECT7030, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PDGF00000000
VERSION     NZ_PDGF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07739081
            Assembly: GCF_002903505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5105270)
  AUTHORS   Roig,F.J., Gonzalez-Candelas,F., Sanjuan,E., Fouz,B., Feil,E.J.,
            Llorens,C., Baker-Austin,C., Oliver,J.D., Danin-Poleg,Y.,
            Gibas,C.J., Kashi,Y., Gulig,P.A., Morrison,S.S. and Amaro,C.
  TITLE     Phylogeny of Vibrio vulnificus from the Analysis of the
            Core-Genome: Implications for Intra-Species Taxonomy
  JOURNAL   Front Microbiol 8, 2613 (2018)
   PUBMED   29358930
  REMARK    Erratum:[Front Microbiol. 2019 Aug 21;10:1904. doi:
            10.3389/fmicb.2019.01904. PMID: 31481942]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5105270)
  AUTHORS   Roig,F.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2017) Microbiology and Ecology, University of
            Valencia, Dr. moliner, 50, Burjassot, Valencia 46100, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PDGF00000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_PDGF00000000.  This version of the project
            (01) has the accession number NZ_PDGF01000000, and consists of
            sequences PDGF01000001-PDGF01000170.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 210x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002903505.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:55:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,592
            CDSs (total)                      :: 4,531
            Genes (coding)                    :: 4,476
            CDSs (with protein)               :: 4,476
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 13 of 55
            Pseudo Genes (incomplete)         :: 43 of 55
            Pseudo Genes (internal stop)      :: 7 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5105270
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="CECT7030"
                     /serovar="A"
                     /host="eel"
                     /db_xref="taxon:672"
                     /geo_loc_name="Denmark"
                     /collection_date="2004"
                     /biotype="2"
WGS         PDGF01000001-PDGF01000170
WGS_SCAFLD  NZ_PDGF01000001-NZ_PDGF01000170
//
LOCUS       NZ_LIXY01000000      4817654 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain Yp2126, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LIXY00000000
VERSION     NZ_LIXY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04012736
            Assembly: GCF_001509855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4817654)
  AUTHORS   Leiser,O.P., Merkley,E.D., Clowers,B.H., Deatherage Kaiser,B.L.,
            Lin,A., Hutchison,J.R., Melville,A.M., Wagner,D.M., Keim,P.S.,
            Foster,J.T. and Kreuzer,H.W.
  TITLE     Investigation of Yersinia pestis Laboratory Adaptation through a
            Combined Genomics and Proteomics Approach
  JOURNAL   PLoS One 10 (11), e0142997 (2015)
   PUBMED   26599979
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4817654)
  AUTHORS   Leiser,O.P., Merkley,E.D., Clowers,B.H., Deatherage Kaiser,B.L.,
            Lin,A., Hutchison,J., Wagner,D.M., Keim,P.S., Kreuzer,H. and
            Foster,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2015) Chemical and Biological Signature Sciences,
            Pacific Northwest National Laboratory, 902 Battelle Blvd PO Box 999
            MSIN P7-50, Richland, WA 99352, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LIXY00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_LIXY00000000.  This version of the project
            (01) has the accession number NZ_LIXY01000000, and consists of
            sequences LIXY01000001-LIXY01000019.
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: ABySS v. 1.3.2
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000009065.1
            Genome Coverage           :: 151.0x
            Sequencing Technology     :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001509855.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:43:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,411
            CDSs (total)                      :: 4,311
            Genes (coding)                    :: 4,094
            CDSs (with protein)               :: 4,094
            Genes (RNA)                       :: 100
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 217
            CDSs (without protein)            :: 217
            Pseudo Genes (ambiguous residues) :: 0 of 217
            Pseudo Genes (frameshifted)       :: 91 of 217
            Pseudo Genes (incomplete)         :: 140 of 217
            Pseudo Genes (internal stop)      :: 22 of 217
            Pseudo Genes (multiple problems)  :: 32 of 217
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4817654
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="Yp2126"
                     /isolation_source="Flea captured from prairie dog burrow
                     showing signs of recent die-off"
                     /db_xref="taxon:632"
                     /geo_loc_name="USA: Arizona"
                     /collection_date="2011"
                     /collected_by="Northern Arizona University"
WGS         LIXY01000001-LIXY01000019
WGS_SCAFLD  NZ_LIXY01000001-NZ_LIXY01000019
//
LOCUS       NZ_MDAZ01000000      5535432 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus strain 10N.222.51.F8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MDAZ00000000
VERSION     NZ_MDAZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05418012
            Assembly: GCF_002875345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5535432)
  AUTHORS   Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M.,
            Chang,W.K., VanInsberghe,D., Elsherbini,J., Sharma,R.S.,
            Cutler,M.B., Kelly,L. and Polz,M.F.
  TITLE     A major lineage of non-tailed dsDNA viruses as unrecognized killers
            of marine bacteria
  JOURNAL   Nature 554 (7690), 118-122 (2018)
   PUBMED   29364876
REFERENCE   2  (bases 1 to 5535432)
  AUTHORS   Kauffman,K., Arevalo,P. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MDAZ00000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_MDAZ00000000.  This version of the project
            (01) has the accession number NZ_MDAZ01000000, and consists of
            sequences MDAZ01000001-MDAZ01000093.
            Source DNA available from Martin Polz, 77 Massachusetts Ave.,
            Cambridge, MA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC GWB v. 8.0
            Genome Coverage       :: 101x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002875345.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:55:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,926
            CDSs (total)                      :: 4,837
            Genes (coding)                    :: 4,761
            CDSs (with protein)               :: 4,761
            Genes (RNA)                       :: 89
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 1 (5S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 31 of 76
            Pseudo Genes (incomplete)         :: 57 of 76
            Pseudo Genes (internal stop)      :: 15 of 76
            Pseudo Genes (multiple problems)  :: 23 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5535432
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /strain="10N.222.51.F8"
                     /isolation_source="Filtered Seawater, 5-63 micron
                     fraction"
                     /db_xref="taxon:29497"
                     /geo_loc_name="USA: Massachusetts, Nahant, Canoe Cove"
                     /collection_date="2010-08-10"
WGS         MDAZ01000001-MDAZ01000093
WGS_SCAFLD  NZ_MDAZ01000001-NZ_MDAZ01000093
//
LOCUS       NZ_PDGO01000000      4893519 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain 94-9-119, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PDGO00000000
VERSION     NZ_PDGO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07739069
            Assembly: GCF_002903625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4893519)
  AUTHORS   Roig,F.J., Gonzalez-Candelas,F., Sanjuan,E., Fouz,B., Feil,E.J.,
            Llorens,C., Baker-Austin,C., Oliver,J.D., Danin-Poleg,Y.,
            Gibas,C.J., Kashi,Y., Gulig,P.A., Morrison,S.S. and Amaro,C.
  TITLE     Phylogeny of Vibrio vulnificus from the Analysis of the
            Core-Genome: Implications for Intra-Species Taxonomy
  JOURNAL   Front Microbiol 8, 2613 (2018)
   PUBMED   29358930
  REMARK    Erratum:[Front Microbiol. 2019 Aug 21;10:1904. doi:
            10.3389/fmicb.2019.01904. PMID: 31481942]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4893519)
  AUTHORS   Roig,F.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2017) Microbiology and Ecology, University of
            Valencia, Dr. moliner, 50, Burjassot, Valencia 46100, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PDGO00000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_PDGO00000000.  This version of the project
            (01) has the accession number NZ_PDGO01000000, and consists of
            sequences PDGO01000001-PDGO01000171.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 166x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002903625.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:49:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,377
            CDSs (total)                      :: 4,309
            Genes (coding)                    :: 4,259
            CDSs (with protein)               :: 4,259
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 13 of 50
            Pseudo Genes (incomplete)         :: 37 of 50
            Pseudo Genes (internal stop)      :: 9 of 50
            Pseudo Genes (multiple problems)  :: 8 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4893519
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="94-9-119"
                     /isolation_source="wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:672"
                     /geo_loc_name="Denmark"
                     /collection_date="1994"
                     /biotype="1"
WGS         PDGO01000001-PDGO01000171
WGS_SCAFLD  NZ_PDGO01000001-NZ_PDGO01000171
//
LOCUS       NZ_MCUB01000000      5362927 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus strain 10N.286.51.F2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MCUB00000000
VERSION     NZ_MCUB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05418192
            Assembly: GCF_002873565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5362927)
  AUTHORS   Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M.,
            Chang,W.K., VanInsberghe,D., Elsherbini,J., Sharma,R.S.,
            Cutler,M.B., Kelly,L. and Polz,M.F.
  TITLE     A major lineage of non-tailed dsDNA viruses as unrecognized killers
            of marine bacteria
  JOURNAL   Nature 554 (7690), 118-122 (2018)
   PUBMED   29364876
REFERENCE   2  (bases 1 to 5362927)
  AUTHORS   Kauffman,K., Arevalo,P. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MCUB00000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_MCUB00000000.  This version of the project
            (01) has the accession number NZ_MCUB01000000, and consists of
            sequences MCUB01000001-MCUB01000158.
            Source DNA available from Martin Polz, 77 Massachusetts Ave.,
            Cambridge, MA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC GWB v. 8.0
            Genome Coverage       :: 29x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002873565.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 11:58:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,796
            CDSs (total)                      :: 4,719
            Genes (coding)                    :: 4,646
            CDSs (with protein)               :: 4,646
            Genes (RNA)                       :: 77
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 25 of 73
            Pseudo Genes (incomplete)         :: 56 of 73
            Pseudo Genes (internal stop)      :: 8 of 73
            Pseudo Genes (multiple problems)  :: 13 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5362927
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /strain="10N.286.51.F2"
                     /isolation_source="Filtered Seawater, 5-63 micron
                     fraction"
                     /db_xref="taxon:29497"
                     /geo_loc_name="USA: Massachusetts, Nahant, Canoe Cove"
                     /collection_date="2010-10-13"
WGS         MCUB01000001-MCUB01000158
WGS_SCAFLD  NZ_MCUB01000001-NZ_MCUB01000158
//
LOCUS       NZ_PDGA01000000      4868082 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain FLA114, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PDGA00000000
VERSION     NZ_PDGA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07739086
            Assembly: GCF_002903415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4868082)
  AUTHORS   Roig,F.J., Gonzalez-Candelas,F., Sanjuan,E., Fouz,B., Feil,E.J.,
            Llorens,C., Baker-Austin,C., Oliver,J.D., Danin-Poleg,Y.,
            Gibas,C.J., Kashi,Y., Gulig,P.A., Morrison,S.S. and Amaro,C.
  TITLE     Phylogeny of Vibrio vulnificus from the Analysis of the
            Core-Genome: Implications for Intra-Species Taxonomy
  JOURNAL   Front Microbiol 8, 2613 (2018)
   PUBMED   29358930
  REMARK    Erratum:[Front Microbiol. 2019 Aug 21;10:1904. doi:
            10.3389/fmicb.2019.01904. PMID: 31481942]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4868082)
  AUTHORS   Roig,F.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2017) Microbiology and Ecology, University of
            Valencia, Dr. moliner, 50, Burjassot, Valencia 46100, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PDGA00000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_PDGA00000000.  This version of the project
            (01) has the accession number NZ_PDGA01000000, and consists of
            sequences PDGA01000001-PDGA01000142.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 781x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002903415.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 12:28:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,381
            CDSs (total)                      :: 4,274
            Genes (coding)                    :: 4,223
            CDSs (with protein)               :: 4,223
            Genes (RNA)                       :: 107
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 95
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 10 of 51
            Pseudo Genes (incomplete)         :: 43 of 51
            Pseudo Genes (internal stop)      :: 9 of 51
            Pseudo Genes (multiple problems)  :: 10 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4868082
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="FLA114"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:672"
                     /geo_loc_name="USA"
                     /collection_date="1995"
                     /biotype="1"
WGS         PDGA01000001-PDGA01000142
WGS_SCAFLD  NZ_PDGA01000001-NZ_PDGA01000142
//
LOCUS       NZ_SMFT01000000      2267305 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Volucribacter psittacicida strain DSM 15534, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMFT00000000
VERSION     NZ_SMFT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866318
            Assembly: GCF_004339025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Volucribacter psittacicida
  ORGANISM  Volucribacter psittacicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Volucribacter.
REFERENCE   1  (bases 1 to 2267305)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2267305)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMFT00000000.1.
            The Volucribacter psittacicida whole genome shotgun (WGS) project
            has the project accession NZ_SMFT00000000.  This version of the
            project (01) has the accession number NZ_SMFT01000000, and consists
            of sequences SMFT01000001-SMFT01000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 661.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004339025.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:01:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,183
            CDSs (total)                      :: 2,124
            Genes (coding)                    :: 2,089
            CDSs (with protein)               :: 2,089
            Genes (RNA)                       :: 59
            rRNAs                             :: 4, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 12 of 35
            Pseudo Genes (incomplete)         :: 22 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 5 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267305
                     /organism="Volucribacter psittacicida"
                     /mol_type="genomic DNA"
                     /strain="DSM 15534"
                     /culture_collection="DSM:15534"
                     /type_material="type strain of Volucribacter psittacicida"
                     /db_xref="taxon:203482"
                     /geo_loc_name="Germany"
WGS         SMFT01000001-SMFT01000011
WGS_SCAFLD  NZ_SMFT01000001-NZ_SMFT01000011
//
LOCUS       NZ_SMAV01000000      5597623 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 29_O_38, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMAV00000000
VERSION     NZ_SMAV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362288
            Assembly: GCF_004342205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5597623)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5597623)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAV00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMAV00000000.  This version of the project
            (01) has the accession number NZ_SMAV01000000, and consists of
            sequences SMAV01000001-SMAV01000050.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 268.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342205.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:23:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,002
            CDSs (total)                      :: 4,899
            Genes (coding)                    :: 4,803
            CDSs (with protein)               :: 4,803
            Genes (RNA)                       :: 103
            rRNAs                             :: 3, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 52 of 96
            Pseudo Genes (incomplete)         :: 64 of 96
            Pseudo Genes (internal stop)      :: 26 of 96
            Pseudo Genes (multiple problems)  :: 38 of 96
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5597623
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="29_O_38"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SMAV01000001-SMAV01000050
WGS_SCAFLD  NZ_SMAV01000001-NZ_SMAV01000050
//
LOCUS       NZ_RHHF01000000      5082584 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain VA-WGS-18048, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RHHF00000000
VERSION     NZ_RHHF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09386624
            Assembly: GCF_004214525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5082584)
  AUTHORS   Pray,R.M.
  TITLE     Genomic Sequencing and assembly of Vibrio vulnificus isolates from
            the Northern Gulf of Mexico
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5082584)
  AUTHORS   Pray,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2018) Life Sciences, Texas A&M - Corpus Christi,
            6300 Ocean Drive, Corpus Christi, TX 78412, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RHHF00000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_RHHF00000000.  This version of the project
            (01) has the accession number NZ_RHHF01000000, and consists of
            sequences RHHF01000001-RHHF01000094.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004214525.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:14:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,595
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,432
            CDSs (with protein)               :: 4,432
            Genes (RNA)                       :: 109
            rRNAs                             :: 4, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 3, 6 (16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 20 of 54
            Pseudo Genes (incomplete)         :: 36 of 54
            Pseudo Genes (internal stop)      :: 12 of 54
            Pseudo Genes (multiple problems)  :: 12 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5082584
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="VA-WGS-18048"
                     /isolation_source="estuarine water"
                     /db_xref="taxon:672"
                     /geo_loc_name="USA"
                     /collection_date="2007-07"
                     /collected_by="Texas A&M University-Corpus Christy"
WGS         RHHF01000001-RHHF01000094
WGS_SCAFLD  NZ_RHHF01000001-NZ_RHHF01000094
//
LOCUS       NZ_SMAY01000000      5417615 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 16BF1_95, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMAY00000000
VERSION     NZ_SMAY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362062
            Assembly: GCF_004342305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5417615)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5417615)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAY00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMAY00000000.  This version of the project
            (01) has the accession number NZ_SMAY01000000, and consists of
            sequences SMAY01000001-SMAY01000096.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 277.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:28:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,926
            CDSs (total)                      :: 4,821
            Genes (coding)                    :: 4,763
            CDSs (with protein)               :: 4,763
            Genes (RNA)                       :: 105
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 20 of 58
            Pseudo Genes (incomplete)         :: 38 of 58
            Pseudo Genes (internal stop)      :: 7 of 58
            Pseudo Genes (multiple problems)  :: 6 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5417615
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="16BF1_95"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SMAY01000001-SMAY01000096
WGS_SCAFLD  NZ_SMAY01000001-NZ_SMAY01000096
//
LOCUS       NZ_JAAXMH010000000   2538900 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella cibaria strain AV1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAXMH000000000
VERSION     NZ_JAAXMH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14541407
            Assembly: GCF_012277235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella cibaria
  ORGANISM  Weissella cibaria
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2538900)
  AUTHORS   Manberger,A., Verbrugghe,P., Guethmundsdottir,E.E., Santesson,S.,
            Nilsson,A., Hreggviethsson,G.O., Linares-Pasten,J.A. and Nordberg
            Karlsson,E.
  TITLE     Taxogenomic assessment and genomic characterisation of Weissella
            cibaria strain 92 able to metabolise oligosaccharides derived from
            dietary fibres
  JOURNAL   Sci Rep 10 (1), 5853 (2020)
   PUBMED   32246087
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538900)
  AUTHORS   Manberger,A., Gudmundsdottir,E., Linares-Pasten,J.A.,
            Hreggvidsson,G.O. and Nordberg Karlsson,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2020) Department of Chemistry, Lund University,
            Naturvetarevagen 14, Lund 22362, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAXMH000000000.1.
            The Weissella cibaria whole genome shotgun (WGS) project has the
            project accession NZ_JAAXMH000000000.  This version of the project
            (01) has the accession number NZ_JAAXMH010000000, and consists of
            sequences JAAXMH010000001-JAAXMH010000152.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 538x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012277235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:13:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,517
            CDSs (total)                      :: 2,408
            Genes (coding)                    :: 2,363
            CDSs (with protein)               :: 2,363
            Genes (RNA)                       :: 109
            rRNAs                             :: 9, 3, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 12 of 45
            Pseudo Genes (incomplete)         :: 23 of 45
            Pseudo Genes (internal stop)      :: 10 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538900
                     /organism="Weissella cibaria"
                     /mol_type="genomic DNA"
                     /strain="AV1"
                     /isolation_source="fermented cabbage"
                     /db_xref="taxon:137591"
                     /geo_loc_name="India: Gujarat, Anand"
                     /collection_date="2009"
                     /collected_by="Ass. Prof. Ami Patel"
WGS         JAAXMH010000001-JAAXMH010000152
WGS_SCAFLD  NZ_JAAXMH010000001-NZ_JAAXMH010000152
//
LOCUS       NZ_SMAU01000000      5802271 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 27_O_14, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMAU00000000
VERSION     NZ_SMAU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362286
            Assembly: GCF_004342545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5802271)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5802271)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAU00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMAU00000000.  This version of the project
            (01) has the accession number NZ_SMAU01000000, and consists of
            sequences SMAU01000001-SMAU01000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 258.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342545.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:38:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,204
            CDSs (total)                      :: 5,107
            Genes (coding)                    :: 4,997
            CDSs (with protein)               :: 4,997
            Genes (RNA)                       :: 97
            rRNAs                             :: 5, 3 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 3 (5S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 52 of 110
            Pseudo Genes (incomplete)         :: 80 of 110
            Pseudo Genes (internal stop)      :: 32 of 110
            Pseudo Genes (multiple problems)  :: 45 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5802271
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="27_O_14"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SMAU01000001-SMAU01000066
WGS_SCAFLD  NZ_SMAU01000001-NZ_SMAU01000066
//
LOCUS       NZ_JAAOCS010000000   2280085 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain CCUG 39518, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAOCS000000000
VERSION     NZ_JAAOCS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219535
            Assembly: GCF_016465945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2280085)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2280085)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAOCS000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAOCS000000000.  This version of the project
            (01) has the accession number NZ_JAAOCS010000000, and consists of
            sequences JAAOCS010000001-JAAOCS010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 339x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016465945.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:34:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,299
            CDSs (total)                      :: 2,197
            Genes (coding)                    :: 2,159
            CDSs (with protein)               :: 2,159
            Genes (RNA)                       :: 102
            rRNAs                             :: 8, 8, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 7, 1 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 11 of 38
            Pseudo Genes (incomplete)         :: 23 of 38
            Pseudo Genes (internal stop)      :: 10 of 38
            Pseudo Genes (multiple problems)  :: 5 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2280085
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="CCUG 39518"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1583"
                     /geo_loc_name="Sweden"
                     /collection_date="2019"
WGS         JAAOCS010000001-JAAOCS010000050
WGS_SCAFLD  NZ_JAAOCS010000001-NZ_JAAOCS010000050
//
LOCUS       NZ_JAAODW010000000   2149009 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain LMG 18475, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAODW000000000
VERSION     NZ_JAAODW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219505
            Assembly: GCF_016466595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2149009)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2149009)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAODW000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAODW000000000.  This version of the project
            (01) has the accession number NZ_JAAODW010000000, and consists of
            sequences JAAODW010000001-JAAODW010000075.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 352x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016466595.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,140
            CDSs (total)                      :: 2,038
            Genes (coding)                    :: 1,993
            CDSs (with protein)               :: 1,993
            Genes (RNA)                       :: 102
            rRNAs                             :: 8, 8, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 7, 2 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 9 of 45
            Pseudo Genes (incomplete)         :: 21 of 45
            Pseudo Genes (internal stop)      :: 20 of 45
            Pseudo Genes (multiple problems)  :: 5 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149009
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="LMG 18475"
                     /isolation_source="tapai"
                     /db_xref="taxon:1583"
                     /geo_loc_name="Malaysia"
                     /collection_date="2019"
WGS         JAAODW010000001-JAAODW010000075
WGS_SCAFLD  NZ_JAAODW010000001-NZ_JAAODW010000075
//
LOCUS       NZ_SMAX01000000      5863086 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 30_P_66, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMAX00000000
VERSION     NZ_SMAX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362069
            Assembly: GCF_004342565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5863086)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5863086)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAX00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMAX00000000.  This version of the project
            (01) has the accession number NZ_SMAX01000000, and consists of
            sequences SMAX01000001-SMAX01000045.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 256.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342565.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:35:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,344
            CDSs (total)                      :: 5,255
            Genes (coding)                    :: 5,162
            CDSs (with protein)               :: 5,162
            Genes (RNA)                       :: 89
            rRNAs                             :: 4, 2 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 43 of 93
            Pseudo Genes (incomplete)         :: 66 of 93
            Pseudo Genes (internal stop)      :: 22 of 93
            Pseudo Genes (multiple problems)  :: 35 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5863086
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="30_P_66"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SMAX01000001-SMAX01000045
WGS_SCAFLD  NZ_SMAX01000001-NZ_SMAX01000045
//
LOCUS       NZ_SJJX01000000      2443629 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella cibaria strain UC4051, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SJJX00000000
VERSION     NZ_SJJX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11026758
            Assembly: GCF_014694565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella cibaria
  ORGANISM  Weissella cibaria
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2443629)
  AUTHORS   Falasconi,I., Fontana,A., Patrone,V., Rebecchi,A., Duserm
            Garrido,G., Principato,L., Callegari,M.L., Spigno,G. and Morelli,L.
  TITLE     Genome-Assisted Characterization of Lactobacillus fermentum,
            Weissella cibaria, and Weissella confusa Strains Isolated from
            Sorghum as Starters for Sourdough Fermentation
  JOURNAL   Microorganisms 8 (9), 1388 (2020)
   PUBMED   32927810
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2443629)
  AUTHORS   Fontana,A., Falasconi,I., Patrone,V., Rebecchi,A. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2019) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SJJX00000000.1.
            The Weissella cibaria whole genome shotgun (WGS) project has the
            project accession NZ_SJJX00000000.  This version of the project
            (01) has the accession number NZ_SJJX01000000, and consists of
            sequences SJJX01000001-SJJX01000072.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1232x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014694565.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:35:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,395
            CDSs (total)                      :: 2,299
            Genes (coding)                    :: 2,251
            CDSs (with protein)               :: 2,251
            Genes (RNA)                       :: 96
            rRNAs                             :: 8, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 5, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 14 of 48
            Pseudo Genes (incomplete)         :: 24 of 48
            Pseudo Genes (internal stop)      :: 14 of 48
            Pseudo Genes (multiple problems)  :: 4 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443629
                     /organism="Weissella cibaria"
                     /mol_type="genomic DNA"
                     /strain="UC4051"
                     /isolation_source="sourdough"
                     /db_xref="taxon:137591"
                     /geo_loc_name="Italy: Piacenza"
                     /lat_lon="45.05 N 9.70 E"
                     /collection_date="2017"
WGS         SJJX01000001-SJJX01000072
WGS_SCAFLD  NZ_SJJX01000001-NZ_SJJX01000072
//
LOCUS       NZ_SMBG01000000      5728957 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 16BF5_48, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMBG00000000
VERSION     NZ_SMBG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362283
            Assembly: GCF_004341905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5728957)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5728957)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMBG00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMBG00000000.  This version of the project
            (01) has the accession number NZ_SMBG01000000, and consists of
            sequences SMBG01000001-SMBG01000058.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 262.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341905.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:35:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,186
            CDSs (total)                      :: 5,082
            Genes (coding)                    :: 4,996
            CDSs (with protein)               :: 4,996
            Genes (RNA)                       :: 104
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 39 of 86
            Pseudo Genes (incomplete)         :: 58 of 86
            Pseudo Genes (internal stop)      :: 22 of 86
            Pseudo Genes (multiple problems)  :: 29 of 86
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5728957
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="16BF5_48"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SMBG01000001-SMBG01000058
WGS_SCAFLD  NZ_SMBG01000001-NZ_SMBG01000058
//
LOCUS       NZ_SMBE01000000      5599872 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 26_O_11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMBE00000000
VERSION     NZ_SMBE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362066
            Assembly: GCF_004341705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5599872)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5599872)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMBE00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMBE00000000.  This version of the project
            (01) has the accession number NZ_SMBE01000000, and consists of
            sequences SMBE01000001-SMBE01000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 268.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004341705.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 13:51:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,018
            CDSs (total)                      :: 4,904
            Genes (coding)                    :: 4,806
            CDSs (with protein)               :: 4,806
            Genes (RNA)                       :: 114
            rRNAs                             :: 3, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 100
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 52 of 98
            Pseudo Genes (incomplete)         :: 65 of 98
            Pseudo Genes (internal stop)      :: 26 of 98
            Pseudo Genes (multiple problems)  :: 38 of 98
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5599872
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="26_O_11"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SMBE01000001-SMBE01000048
WGS_SCAFLD  NZ_SMBE01000001-NZ_SMBE01000048
//
LOCUS       NZ_JAAODG010000000   2159186 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain BCC 2344, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAODG000000000
VERSION     NZ_JAAODG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219521
            Assembly: GCF_016466305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2159186)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2159186)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAODG000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAODG000000000.  This version of the project
            (01) has the accession number NZ_JAAODG010000000, and consists of
            sequences JAAODG010000001-JAAODG010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 337x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016466305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:39:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,141
            CDSs (total)                      :: 2,042
            Genes (coding)                    :: 1,997
            CDSs (with protein)               :: 1,997
            Genes (RNA)                       :: 99
            rRNAs                             :: 7, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 5, 3 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 11 of 45
            Pseudo Genes (incomplete)         :: 24 of 45
            Pseudo Genes (internal stop)      :: 15 of 45
            Pseudo Genes (multiple problems)  :: 5 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159186
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="BCC 2344"
                     /isolation_source="sourdough"
                     /db_xref="taxon:1583"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAAODG010000001-JAAODG010000078
WGS_SCAFLD  NZ_JAAODG010000001-NZ_JAAODG010000078
//
LOCUS       NZ_JAAOCP010000000   2410782 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain CCUG 43002, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAOCP000000000
VERSION     NZ_JAAOCP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219538
            Assembly: GCF_016465965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2410782)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2410782)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAOCP000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAOCP000000000.  This version of the project
            (01) has the accession number NZ_JAAOCP010000000, and consists of
            sequences JAAOCP010000001-JAAOCP010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 405x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016465965.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:33:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,370
            CDSs (total)                      :: 2,271
            Genes (coding)                    :: 2,252
            CDSs (with protein)               :: 2,252
            Genes (RNA)                       :: 99
            rRNAs                             :: 8, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 4 (5S, 16S)
            tRNAs                             :: 82
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 4 of 19
            Pseudo Genes (incomplete)         :: 12 of 19
            Pseudo Genes (internal stop)      :: 3 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410782
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="CCUG 43002"
                     /host="Homo sapiens"
                     /db_xref="taxon:1583"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JAAOCP010000001-JAAOCP010000056
WGS_SCAFLD  NZ_JAAOCP010000001-NZ_JAAOCP010000056
//
LOCUS       NZ_SLWE01000000      5419319 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 25_P_9, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SLWE00000000
VERSION     NZ_SLWE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362285
            Assembly: GCF_004342815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5419319)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5419319)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLWE00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SLWE00000000.  This version of the project
            (01) has the accession number NZ_SLWE01000000, and consists of
            sequences SLWE01000001-SLWE01000100.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 277.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:04:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,819
            CDSs (total)                      :: 4,724
            Genes (coding)                    :: 4,589
            CDSs (with protein)               :: 4,589
            Genes (RNA)                       :: 95
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 58 of 135
            Pseudo Genes (incomplete)         :: 76 of 135
            Pseudo Genes (internal stop)      :: 34 of 135
            Pseudo Genes (multiple problems)  :: 28 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5419319
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="25_P_9"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SLWE01000001-SLWE01000100
WGS_SCAFLD  NZ_SLWE01000001-NZ_SLWE01000100
//
LOCUS       NZ_JAAODC010000000   2167360 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain BCC 4194, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAODC000000000
VERSION     NZ_JAAODC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219525
            Assembly: GCF_016466255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2167360)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2167360)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAODC000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAODC000000000.  This version of the project
            (01) has the accession number NZ_JAAODC010000000, and consists of
            sequences JAAODC010000001-JAAODC010000081.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 333x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016466255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:39:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,144
            CDSs (total)                      :: 2,045
            Genes (coding)                    :: 2,001
            CDSs (with protein)               :: 2,001
            Genes (RNA)                       :: 99
            rRNAs                             :: 8, 6, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 5, 2 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 10 of 44
            Pseudo Genes (incomplete)         :: 23 of 44
            Pseudo Genes (internal stop)      :: 14 of 44
            Pseudo Genes (multiple problems)  :: 3 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167360
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="BCC 4194"
                     /isolation_source="sourdough"
                     /db_xref="taxon:1583"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAAODC010000001-JAAODC010000081
WGS_SCAFLD  NZ_JAAODC010000001-NZ_JAAODC010000081
//
LOCUS       NZ_JAAOCZ010000000   2340659 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain CCUG 17582, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAOCZ000000000
VERSION     NZ_JAAOCZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219528
            Assembly: GCF_016466195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2340659)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2340659)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAOCZ000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAOCZ000000000.  This version of the project
            (01) has the accession number NZ_JAAOCZ010000000, and consists of
            sequences JAAOCZ010000001-JAAOCZ010000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 343x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016466195.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:42:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,385
            CDSs (total)                      :: 2,288
            Genes (coding)                    :: 2,245
            CDSs (with protein)               :: 2,245
            Genes (RNA)                       :: 97
            rRNAs                             :: 7, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 23S)
            partial rRNAs                     :: 2, 6 (5S, 16S)
            tRNAs                             :: 80
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 11 of 43
            Pseudo Genes (incomplete)         :: 26 of 43
            Pseudo Genes (internal stop)      :: 11 of 43
            Pseudo Genes (multiple problems)  :: 5 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340659
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="CCUG 17582"
                     /isolation_source="bone marrow"
                     /host="Homo sapiens"
                     /db_xref="taxon:1583"
                     /geo_loc_name="Sweden"
                     /collection_date="2019"
WGS         JAAOCZ010000001-JAAOCZ010000082
WGS_SCAFLD  NZ_JAAOCZ010000001-NZ_JAAOCZ010000082
//
LOCUS       NZ_JADQII010000000   4527453 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain VP376, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADQII000000000
VERSION     NZ_JADQII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16783272
            Assembly: GCF_016822055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4527453)
  AUTHORS   Bian,S., Zeng,W., Li,Q., Li,Y., Wong,N.K., Jiang,M., Zuo,L., Hu,Q.
            and Li,L.
  TITLE     Genetic Structure, Function, and Evolution of Capsule Biosynthesis
            Loci in Vibrio parahaemolyticus
  JOURNAL   Front Microbiol 11, 546150 (2021)
   PUBMED   33505361
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4527453)
  AUTHORS   Bian,S. and Li,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Shenzhen Key Laboratory of Unknown Pathogen
            Identification, BGI-Shenzhen, Jinsha Road, Dapeng District,
            Shenzhen, Guangdong 518108, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADQII000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JADQII000000000.  This version of the project
            (01) has the accession number NZ_JADQII010000000, and consists of
            sequences JADQII010000001-JADQII010000074.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.11.1-1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: BGISEQ
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016822055.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 14:59:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,219
            CDSs (total)                      :: 4,158
            Genes (coding)                    :: 4,108
            CDSs (with protein)               :: 4,108
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 4 of 50
            Pseudo Genes (incomplete)         :: 47 of 50
            Pseudo Genes (internal stop)      :: 3 of 50
            Pseudo Genes (multiple problems)  :: 4 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4527453
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="VP376"
                     /serovar="OUT:KUT"
                     /db_xref="taxon:676"
                     /geo_loc_name="China:Guangdong, Shenzhen"
                     /lat_lon="22.50 N 114.00 E"
                     /collection_date="2010"
                     /collected_by="Songgang People's Hospital"
WGS         JADQII010000001-JADQII010000074
WGS_SCAFLD  NZ_JADQII010000001-NZ_JADQII010000074
//
LOCUS       NZ_JAKNOW010000000   4676930 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNOW000000000
VERSION     NZ_JAKNOW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805042
            Assembly: GCF_022290135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4676930)
  AUTHORS   Perez-Duque,A., Gonzalez-Munoz,A., Arboleda-Valencia,J.,
            Vivas-Aguas,L.J., Cordoba-Meza,T., Rodriguez-Rey,G.T.,
            Diaz-Guevara,P., Martinez-Urtaza,J. and Wiesner-Reyes,M.
  TITLE     Comparative Genomics of Clinical and Environmental Isolates of
            Vibrio spp. of Colombia: Implications of Traits Associated with
            Virulence and Resistance
  JOURNAL   Pathogens 10 (12), 1605 (2021)
   PUBMED   34959560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4676930)
  AUTHORS   Perez-Duque,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNOW000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNOW000000000.  This version of the project
            (01) has the accession number NZ_JAKNOW010000000, and consists of
            sequences JAKNOW010000001-JAKNOW010000127.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022290135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:24:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,491
            CDSs (total)                      :: 4,398
            Genes (coding)                    :: 4,300
            CDSs (with protein)               :: 4,300
            Genes (RNA)                       :: 93
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 28 of 98
            Pseudo Genes (incomplete)         :: 68 of 98
            Pseudo Genes (internal stop)      :: 13 of 98
            Pseudo Genes (multiple problems)  :: 11 of 98
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4676930
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV5"
                     /isolation_source="Continental water"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: Cauca"
                     /lat_lon="2.7050 N 76.8260 W"
                     /collection_date="2011-02-17"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNOW010000001-JAKNOW010000127
WGS_SCAFLD  NZ_JAKNOW010000001-NZ_JAKNOW010000127
//
LOCUS       NZ_JAKNPB010000000   4620333 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV92, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNPB000000000
VERSION     NZ_JAKNPB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805047
            Assembly: GCF_022289935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4620333)
  AUTHORS   Perez-Duque,A., Gonzalez-Munoz,A., Arboleda-Valencia,J.,
            Vivas-Aguas,L.J., Cordoba-Meza,T., Rodriguez-Rey,G.T.,
            Diaz-Guevara,P., Martinez-Urtaza,J. and Wiesner-Reyes,M.
  TITLE     Comparative Genomics of Clinical and Environmental Isolates of
            Vibrio spp. of Colombia: Implications of Traits Associated with
            Virulence and Resistance
  JOURNAL   Pathogens 10 (12), 1605 (2021)
   PUBMED   34959560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4620333)
  AUTHORS   Perez-Duque,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNPB000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNPB000000000.  This version of the project
            (01) has the accession number NZ_JAKNPB010000000, and consists of
            sequences JAKNPB010000001-JAKNPB010000115.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022289935.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:27:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,428
            CDSs (total)                      :: 4,339
            Genes (coding)                    :: 4,239
            CDSs (with protein)               :: 4,239
            Genes (RNA)                       :: 89
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 34 of 100
            Pseudo Genes (incomplete)         :: 62 of 100
            Pseudo Genes (internal stop)      :: 12 of 100
            Pseudo Genes (multiple problems)  :: 8 of 100
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4620333
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV92"
                     /isolation_source="Fresh water"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: Magdalena"
                     /lat_lon="10.4113 N 74.4057 W"
                     /collection_date="2017-05-09"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNPB010000001-JAKNPB010000115
WGS_SCAFLD  NZ_JAKNPB010000001-NZ_JAKNPB010000115
//
LOCUS       NZ_JAKNOP010000000   4972473 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV105, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNOP000000000
VERSION     NZ_JAKNOP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20804972
            Assembly: GCF_022290435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4972473)
  AUTHORS   Perez,A., Arboleda,J., Narvaez,S., Vivas,J., Rodriguez,G.,
            Cordoba,T., Gonzalez,A. and Wiesner,M.
  TITLE     Environmental and clinical isolates of Vibrio species from Colombia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4972473)
  AUTHORS   Perez,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2021) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNOP000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNOP000000000.  This version of the project
            (01) has the accession number NZ_JAKNOP010000000, and consists of
            sequences JAKNOP010000001-JAKNOP010000692.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022290435.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:33:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,128
            CDSs (total)                      :: 5,039
            Genes (coding)                    :: 4,799
            CDSs (with protein)               :: 4,799
            Genes (RNA)                       :: 89
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 79
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 240
            CDSs (without protein)            :: 240
            Pseudo Genes (ambiguous residues) :: 0 of 240
            Pseudo Genes (frameshifted)       :: 17 of 240
            Pseudo Genes (incomplete)         :: 217 of 240
            Pseudo Genes (internal stop)      :: 18 of 240
            Pseudo Genes (multiple problems)  :: 12 of 240
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4972473
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV105"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: San Andres"
                     /lat_lon="12.5769 N 81.7051 W"
                     /collection_date="2016-10-31"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNOP010000001-JAKNOP010000692
WGS_SCAFLD  NZ_JAKNOP010000001-NZ_JAKNOP010000692
//
LOCUS       NZ_JAKNOY010000000   4831745 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV75, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNOY000000000
VERSION     NZ_JAKNOY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805044
            Assembly: GCF_022290015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4831745)
  AUTHORS   Perez-Duque,A., Gonzalez-Munoz,A., Arboleda-Valencia,J.,
            Vivas-Aguas,L.J., Cordoba-Meza,T., Rodriguez-Rey,G.T.,
            Diaz-Guevara,P., Martinez-Urtaza,J. and Wiesner-Reyes,M.
  TITLE     Comparative Genomics of Clinical and Environmental Isolates of
            Vibrio spp. of Colombia: Implications of Traits Associated with
            Virulence and Resistance
  JOURNAL   Pathogens 10 (12), 1605 (2021)
   PUBMED   34959560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4831745)
  AUTHORS   Perez-Duque,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNOY000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNOY000000000.  This version of the project
            (01) has the accession number NZ_JAKNOY010000000, and consists of
            sequences JAKNOY010000001-JAKNOY010000101.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022290015.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:29:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,593
            CDSs (total)                      :: 4,505
            Genes (coding)                    :: 4,412
            CDSs (with protein)               :: 4,412
            Genes (RNA)                       :: 88
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 79
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 23 of 93
            Pseudo Genes (incomplete)         :: 66 of 93
            Pseudo Genes (internal stop)      :: 15 of 93
            Pseudo Genes (multiple problems)  :: 10 of 93
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4831745
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV75"
                     /isolation_source="water"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: San Andres"
                     /lat_lon="12.5769 N 81.7051 W"
                     /collection_date="2017-06-29"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNOY010000001-JAKNOY010000101
WGS_SCAFLD  NZ_JAKNOY010000001-NZ_JAKNOY010000101
//
LOCUS       NZ_JAKNOS010000000   4866117 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV47, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNOS000000000
VERSION     NZ_JAKNOS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805039
            Assembly: GCF_022290265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4866117)
  AUTHORS   Perez,A., Arboleda,J., Narvaez,S., Vivas,J., Rodriguez,G.,
            Cordoba,T., Gonzalez,A. and Wiesner,M.
  TITLE     Environmental and clinical isolates of Vibrio species from Colombia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4866117)
  AUTHORS   Perez,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2021) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNOS000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNOS000000000.  This version of the project
            (01) has the accession number NZ_JAKNOS010000000, and consists of
            sequences JAKNOS010000001-JAKNOS010000313.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022290265.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:32:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,796
            CDSs (total)                      :: 4,710
            Genes (coding)                    :: 4,535
            CDSs (with protein)               :: 4,535
            Genes (RNA)                       :: 86
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 76
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 23 of 175
            Pseudo Genes (incomplete)         :: 151 of 175
            Pseudo Genes (internal stop)      :: 18 of 175
            Pseudo Genes (multiple problems)  :: 15 of 175
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4866117
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV47"
                     /isolation_source="marine water"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: Magdalena"
                     /lat_lon="10.4113 N 74.4057 W"
                     /collection_date="2018-03-14"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNOS010000001-JAKNOS010000313
WGS_SCAFLD  NZ_JAKNOS010000001-NZ_JAKNOS010000313
//
LOCUS       NZ_JALGRC010000000   3914903 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Virgibacillus halodenitrificans strain PheN4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGRC000000000
VERSION     NZ_JALGRC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26994091
            Assembly: GCF_022810285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Virgibacillus halodenitrificans
  ORGANISM  Virgibacillus halodenitrificans
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Virgibacillus.
REFERENCE   1  (bases 1 to 3914903)
  AUTHORS   Zhang,Z.
  TITLE     Anaerobic phenanthrene biodegradation by a new
            salt-tolerant/halophilic and nitrate-reducing Virgibacillus
            halodenitrificans strain PheN4 and metabolic processes exploration
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3914903)
  AUTHORS   Zhang,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2022) Environmental science and engineering,
            Tsinghua university, Wudaokou, Bei Jing 100084, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGRC000000000.1.
            The Virgibacillus halodenitrificans whole genome shotgun (WGS)
            project has the project accession NZ_JALGRC000000000.  This version
            of the project (01) has the accession number NZ_JALGRC010000000,
            and consists of sequences JALGRC010000001-JALGRC010000049.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Tsinghua University, China.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Edena v. v3.131028
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 381.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022810285.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:32:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,968
            CDSs (total)                      :: 3,857
            Genes (coding)                    :: 3,833
            CDSs (with protein)               :: 3,833
            Genes (RNA)                       :: 111
            rRNAs                             :: 8, 13, 23 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 13, 23 (16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 16 of 24
            Pseudo Genes (internal stop)      :: 3 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3914903
                     /organism="Virgibacillus halodenitrificans"
                     /mol_type="genomic DNA"
                     /strain="PheN4"
                     /isolation_source="soil subsurface"
                     /db_xref="taxon:1482"
                     /geo_loc_name="China: Karamay oil field"
                     /lat_lon="45.36 N 84.42 E"
                     /collection_date="2021-10-11"
WGS         JALGRC010000001-JALGRC010000049
WGS_SCAFLD  NZ_JALGRC010000001-NZ_JALGRC010000049
//
LOCUS       NZ_LWID01000000      2638328 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Volucribacter amazonae strain 146/S8/89, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LWID00000000
VERSION     NZ_LWID00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04548870
            Assembly: GCF_029783845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Volucribacter amazonae
  ORGANISM  Volucribacter amazonae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Volucribacter.
REFERENCE   1  (bases 1 to 2638328)
  AUTHORS   Hansen,M.J., Bojesen,A.M. and Planet,P.
  TITLE     Co-evolution between Pasteurellaceae and their hosts
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2638328)
  AUTHORS   Hansen,M.J., Bojesen,A.M. and Planet,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2016) Department of Veterinary Disease Biology,
            University of Copenhagen, Stigboejlen 4, Frederiksberg C 1870,
            Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LWID00000000.1.
            The Volucribacter amazonae whole genome shotgun (WGS) project has
            the project accession NZ_LWID00000000.  This version of the project
            (01) has the accession number NZ_LWID01000000, and consists of
            sequences LWID01000001-LWID01000002.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2016
            Assembly Method        :: HGAP3 v. 2016
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 334.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029783845.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:19:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,539
            CDSs (total)                      :: 2,460
            Genes (coding)                    :: 2,401
            CDSs (with protein)               :: 2,401
            Genes (RNA)                       :: 79
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 26 of 59
            Pseudo Genes (incomplete)         :: 33 of 59
            Pseudo Genes (internal stop)      :: 19 of 59
            Pseudo Genes (multiple problems)  :: 16 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638328
                     /organism="Volucribacter amazonae"
                     /mol_type="genomic DNA"
                     /strain="146/S8/89"
                     /host="Parrot"
                     /type_material="type strain of Volucribacter amazonae"
                     /db_xref="taxon:256731"
                     /geo_loc_name="Germany"
                     /collection_date="1989"
                     /collected_by="H. Gerlach"
WGS         LWID01000001-LWID01000002
WGS_SCAFLD  NZ_LWID01000001-NZ_LWID01000002
//
LOCUS       NZ_JAKNOZ010000000   5341355 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV76, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNOZ000000000
VERSION     NZ_JAKNOZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805045
            Assembly: GCF_022290035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5341355)
  AUTHORS   Perez,A., Arboleda,J., Narvaez,S., Vivas,J., Rodriguez,G.,
            Cordoba,T., Gonzalez,A. and Wiesner,M.
  TITLE     Environmental and clinical isolates of Vibrio species from Colombia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5341355)
  AUTHORS   Perez,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2021) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNOZ000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNOZ000000000.  This version of the project
            (01) has the accession number NZ_JAKNOZ010000000, and consists of
            sequences JAKNOZ010000001-JAKNOZ010000944.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022290035.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:35:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,699
            CDSs (total)                      :: 5,609
            Genes (coding)                    :: 5,207
            CDSs (with protein)               :: 5,207
            Genes (RNA)                       :: 90
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 81
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 402
            CDSs (without protein)            :: 402
            Pseudo Genes (ambiguous residues) :: 0 of 402
            Pseudo Genes (frameshifted)       :: 49 of 402
            Pseudo Genes (incomplete)         :: 356 of 402
            Pseudo Genes (internal stop)      :: 34 of 402
            Pseudo Genes (multiple problems)  :: 33 of 402
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5341355
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV76"
                     /isolation_source="water"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: Magdalena"
                     /lat_lon="10.4113 N 74.4057 W"
                     /collection_date="2017-07-05"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNOZ010000001-JAKNOZ010000944
WGS_SCAFLD  NZ_JAKNOZ010000001-NZ_JAKNOZ010000944
//
LOCUS       NZ_JAKNOR010000000   4792370 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNOR000000000
VERSION     NZ_JAKNOR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805038
            Assembly: GCF_022290255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4792370)
  AUTHORS   Perez-Duque,A., Gonzalez-Munoz,A., Arboleda-Valencia,J.,
            Vivas-Aguas,L.J., Cordoba-Meza,T., Rodriguez-Rey,G.T.,
            Diaz-Guevara,P., Martinez-Urtaza,J. and Wiesner-Reyes,M.
  TITLE     Comparative Genomics of Clinical and Environmental Isolates of
            Vibrio spp. of Colombia: Implications of Traits Associated with
            Virulence and Resistance
  JOURNAL   Pathogens 10 (12), 1605 (2021)
   PUBMED   34959560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4792370)
  AUTHORS   Perez-Duque,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNOR000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNOR000000000.  This version of the project
            (01) has the accession number NZ_JAKNOR010000000, and consists of
            sequences JAKNOR010000001-JAKNOR010000108.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022290255.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 15:38:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,573
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,391
            CDSs (with protein)               :: 4,391
            Genes (RNA)                       :: 87
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 95
            CDSs (without protein)            :: 95
            Pseudo Genes (ambiguous residues) :: 0 of 95
            Pseudo Genes (frameshifted)       :: 17 of 95
            Pseudo Genes (incomplete)         :: 68 of 95
            Pseudo Genes (internal stop)      :: 19 of 95
            Pseudo Genes (multiple problems)  :: 9 of 95
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4792370
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV3"
                     /isolation_source="Continental water"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: Atlantico"
                     /lat_lon="10.6966 N 74.8741 W"
                     /collection_date="2014-12-08"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNOR010000001-JAKNOR010000108
WGS_SCAFLD  NZ_JAKNOR010000001-NZ_JAKNOR010000108
//
LOCUS       NZ_JALGBD010000000   4989587 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain CUVETCC1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGBD000000000
VERSION     NZ_JALGBD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26741402
            Assembly: GCF_022808495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4989587)
  AUTHORS   Raharjo,H.M., Rodkhum,C. and Dong,H.T.
  TITLE     Resistome analysis of Vibrio vulnificus isolated from farmed Asian
            sea bass in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4989587)
  AUTHORS   Raharjo,H.M., Rodkhum,C. and Dong,H.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2022) Veterinary Microbiology, Chulalongkorn
            University, 39 Henri Dunant Road, Bangkok, Bangkok 10330, Thailand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGBD000000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_JALGBD000000000.  This version of the project
            (01) has the accession number NZ_JALGBD010000000, and consists of
            sequences JALGBD010000001-JALGBD010000099.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Center of Excellence in Fish
            Infectious Diseases (CE FID).
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022808495.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:07:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,496
            CDSs (total)                      :: 4,387
            Genes (coding)                    :: 4,337
            CDSs (with protein)               :: 4,337
            Genes (RNA)                       :: 109
            rRNAs                             :: 4, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 98
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 11 of 50
            Pseudo Genes (incomplete)         :: 41 of 50
            Pseudo Genes (internal stop)      :: 8 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4989587
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="CUVETCC1"
                     /host="Asian sea bass"
                     /db_xref="taxon:672"
                     /geo_loc_name="Thailand: Chachoengsao"
                     /lat_lon="13.3044 N 101.0102 E"
                     /collection_date="2021-06"
                     /collected_by="CEFID"
WGS         JALGBD010000001-JALGBD010000099
WGS_SCAFLD  NZ_JALGBD010000001-NZ_JALGBD010000099
//
LOCUS       NZ_JACENY010000000   5682451 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio harveyi strain BII-6C, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACENY000000000
VERSION     NZ_JACENY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15597504
            Assembly: GCF_024531115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio harveyi
  ORGANISM  Vibrio harveyi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5682451)
  AUTHORS   Neetoo,H., Reega,K., Manoga,Z.S., Nazurally,N., Bhoyroo,V.,
            Allam,M., Jaufeerally-Fakim,Y., Ghoorah,A.W., Jaumdally,W.,
            Hossen,A.M., Mayghun,F., Ismail,A. and Hosenally,M.
  TITLE     Prevalence, Genomic Characterization, and Risk Assessment of Human
            Pathogenic Vibrio Species in Seafood
  JOURNAL   J Food Prot 85 (11), 1553-1565 (2022)
   PUBMED   35880931
REFERENCE   2  (bases 1 to 5682451)
  AUTHORS   Neetoo,H. and Allam,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2020) Agriculture and Food Science, University of
            Mauritius, Reduit Road, Reduit, Moka 80837, Mauritius
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACENY000000000.1.
            The Vibrio harveyi whole genome shotgun (WGS) project has the
            project accession NZ_JACENY000000000.  This version of the project
            (01) has the accession number NZ_JACENY010000000, and consists of
            sequences JACENY010000001-JACENY010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024531115.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:22:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,195
            CDSs (total)                      :: 5,071
            Genes (coding)                    :: 5,036
            CDSs (with protein)               :: 5,036
            Genes (RNA)                       :: 124
            rRNAs                             :: 5, 6, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 1, 6, 2 (5S, 16S, 23S)
            tRNAs                             :: 107
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 7 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 3 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5682451
                     /organism="Vibrio harveyi"
                     /mol_type="genomic DNA"
                     /strain="BII-6C"
                     /host="Lethrinus nebulosus"
                     /db_xref="taxon:669"
                     /geo_loc_name="Mauritius: Pointe aux Piments"
                     /lat_lon="20.0663 S 57.5212 E"
                     /collection_date="2017-08-14"
                     /collected_by="Keshnee Reega"
WGS         JACENY010000001-JACENY010000048
WGS_SCAFLD  NZ_JACENY010000001-NZ_JACENY010000048
//
LOCUS       NZ_JALGBG010000000   4992294 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain CUVETSS48, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALGBG000000000
VERSION     NZ_JALGBG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26742818
            Assembly: GCF_022808555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4992294)
  AUTHORS   Raharjo,H.M., Rodkhum,C. and Dong,H.T.
  TITLE     Resistome analysis of Vibrio vulnificus isolated from farmed Asian
            sea bass in Thailand
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4992294)
  AUTHORS   Raharjo,H.M., Rodkhum,C. and Dong,H.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2022) Veterinary Microbiology, Chulalongkorn
            University, 39 Henri Dunant Road, Bangkok, Bangkok 10330, Thailand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGBG000000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_JALGBG000000000.  This version of the project
            (01) has the accession number NZ_JALGBG010000000, and consists of
            sequences JALGBG010000001-JALGBG010000112.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Center of Excellence in Fish
            Infectious Diseases (CE FID).
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022808555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:30:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,518
            CDSs (total)                      :: 4,400
            Genes (coding)                    :: 4,352
            CDSs (with protein)               :: 4,352
            Genes (RNA)                       :: 118
            rRNAs                             :: 7, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 12 of 48
            Pseudo Genes (incomplete)         :: 39 of 48
            Pseudo Genes (internal stop)      :: 10 of 48
            Pseudo Genes (multiple problems)  :: 11 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4992294
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="CUVETSS48"
                     /host="Asian sea bass"
                     /db_xref="taxon:672"
                     /geo_loc_name="Thailand: Samut Songkhram"
                     /lat_lon="13.2014 N 99.5847 E"
                     /collection_date="2021-06"
                     /collected_by="CEFID"
WGS         JALGBG010000001-JALGBG010000112
WGS_SCAFLD  NZ_JALGBG010000001-NZ_JALGBG010000112
//
LOCUS       NZ_JACENZ010000000   5057945 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio diabolicus strain BII-1I, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACENZ000000000
VERSION     NZ_JACENZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15597503
            Assembly: GCF_024531135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio diabolicus
  ORGANISM  Vibrio diabolicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio; Vibrio diabolicus subgroup.
REFERENCE   1  (bases 1 to 5057945)
  AUTHORS   Neetoo,H., Reega,K., Manoga,Z.S., Nazurally,N., Bhoyroo,V.,
            Allam,M., Jaufeerally-Fakim,Y., Ghoorah,A.W., Jaumdally,W.,
            Hossen,A.M., Mayghun,F., Ismail,A. and Hosenally,M.
  TITLE     Prevalence, Genomic Characterization, and Risk Assessment of Human
            Pathogenic Vibrio Species in Seafood
  JOURNAL   J Food Prot 85 (11), 1553-1565 (2022)
   PUBMED   35880931
REFERENCE   2  (bases 1 to 5057945)
  AUTHORS   Neetoo,H. and Allam,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2020) Agriculture and Food Science, University of
            Mauritius, Reduit Road, Reduit, Moka 80837, Mauritius
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACENZ000000000.1.
            The Vibrio diabolicus whole genome shotgun (WGS) project has the
            project accession NZ_JACENZ000000000.  This version of the project
            (01) has the accession number NZ_JACENZ010000000, and consists of
            sequences JACENZ010000001-JACENZ010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024531135.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 16:58:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,650
            CDSs (total)                      :: 4,538
            Genes (coding)                    :: 4,480
            CDSs (with protein)               :: 4,480
            Genes (RNA)                       :: 112
            rRNAs                             :: 9, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 27 of 58
            Pseudo Genes (incomplete)         :: 33 of 58
            Pseudo Genes (internal stop)      :: 18 of 58
            Pseudo Genes (multiple problems)  :: 14 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5057945
                     /organism="Vibrio diabolicus"
                     /mol_type="genomic DNA"
                     /strain="BII-1I"
                     /host="Scarus ghobban"
                     /db_xref="taxon:50719"
                     /geo_loc_name="Mauritius: Albion"
                     /lat_lon="20.2081 S 57.4048 E"
                     /collection_date="2017-03-22"
                     /collected_by="Hudaa Neetoo"
WGS         JACENZ010000001-JACENZ010000033
WGS_SCAFLD  NZ_JACENZ010000001-NZ_JACENZ010000033
//
LOCUS       NZ_CEVYHY010000000   3694208 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: [Clostridium] scindens isolate DRR171465_bin_13577, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEVYHY000000000
VERSION     NZ_CEVYHY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122088243
            Sequence Read Archive: DRR171465
            Assembly: GCF_982404055.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      [Clostridium] scindens (human gut metagenome)
  ORGANISM  [Clostridium] scindens
            Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales;
            Lachnospiraceae.
REFERENCE   1  (bases 1 to 3694208)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVYHY000000000.1.
            The [Clostridium] scindens whole genome shotgun (WGS) project has
            the project accession NZ_CEVYHY000000000.  This version of the
            project (01) has the accession number NZ_CEVYHY010000000, and
            consists of sequences CEVYHY010000001-CEVYHY010000229.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171465.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982404055.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:39:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,565
            CDSs (total)                      :: 3,540
            Genes (coding)                    :: 3,478
            CDSs (with protein)               :: 3,478
            Genes (RNA)                       :: 25
            tRNAs                             :: 21
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 6 of 62
            Pseudo Genes (incomplete)         :: 53 of 62
            Pseudo Genes (internal stop)      :: 4 of 62
            Pseudo Genes (multiple problems)  :: 1 of 62
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3694208
                     /organism="[Clostridium] scindens"
                     /mol_type="genomic DNA"
                     /isolate="DRR171465_bin_13577"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:29347"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVYHY010000001-CEVYHY010000229
WGS_SCAFLD  NZ_CEVYHY010000001-NZ_CEVYHY010000229
//
LOCUS       NZ_CAWQAU010000000   5706319 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_017916575.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQAU000000000
VERSION     NZ_CAWQAU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018493
            Assembly: GCF_963892795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5706319)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQAU000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWQAU000000000.  This version of the project
            (01) has the accession number NZ_CAWQAU010000000, and consists of
            sequences CAWQAU010000001-CAWQAU010000160.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963892795.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:59:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,190
            CDSs (total)                      :: 5,105
            Genes (coding)                    :: 4,982
            CDSs (with protein)               :: 4,982
            Genes (RNA)                       :: 85
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 60 of 123
            Pseudo Genes (incomplete)         :: 84 of 123
            Pseudo Genes (internal stop)      :: 32 of 123
            Pseudo Genes (multiple problems)  :: 43 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5706319
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_017916575.1"
                     /db_xref="taxon:246167"
WGS         CAWQAU010000001-CAWQAU010000160
WGS_SCAFLD  NZ_CAWQAU010000001-NZ_CAWQAU010000160
//
LOCUS       NZ_CAWQAQ010000000   5706673 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_017916625.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQAQ000000000
VERSION     NZ_CAWQAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018495
            Assembly: GCF_963892785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5706673)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQAQ000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWQAQ000000000.  This version of the project
            (01) has the accession number NZ_CAWQAQ010000000, and consists of
            sequences CAWQAQ010000001-CAWQAQ010000159.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963892785.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 17:59:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,190
            CDSs (total)                      :: 5,110
            Genes (coding)                    :: 4,991
            CDSs (with protein)               :: 4,991
            Genes (RNA)                       :: 80
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 59 of 119
            Pseudo Genes (incomplete)         :: 80 of 119
            Pseudo Genes (internal stop)      :: 30 of 119
            Pseudo Genes (multiple problems)  :: 41 of 119
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5706673
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_017916625.1"
                     /db_xref="taxon:246167"
WGS         CAWQAQ010000001-CAWQAQ010000159
WGS_SCAFLD  NZ_CAWQAQ010000001-NZ_CAWQAQ010000159
//
LOCUS       NZ_CEWDKC010000000   2866100 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: [Clostridium] scindens isolate DRR171924_bin_10928, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEWDKC000000000
VERSION     NZ_CEWDKC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA122091713
            Sequence Read Archive: DRR171924
            Assembly: GCF_982439475.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      [Clostridium] scindens (human gut metagenome)
  ORGANISM  [Clostridium] scindens
            Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales;
            Lachnospiraceae.
REFERENCE   1  (bases 1 to 2866100)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-APR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEWDKC000000000.1.
            The [Clostridium] scindens whole genome shotgun (WGS) project has
            the project accession NZ_CEWDKC000000000.  This version of the
            project (01) has the accession number NZ_CEWDKC010000000, and
            consists of sequences CEWDKC010000001-CEWDKC010000248.
            This is a Third Party Annotation (TPA) bin derived from DRP004793.
            This sample represents a Metagenome-Assembled Genome (MAG) from the
            metagenomic run DRR171924.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982439475.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 20:43:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,956
            CDSs (total)                      :: 2,921
            Genes (coding)                    :: 2,823
            CDSs (with protein)               :: 2,823
            Genes (RNA)                       :: 35
            tRNAs                             :: 31
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 15 of 98
            Pseudo Genes (incomplete)         :: 89 of 98
            Pseudo Genes (internal stop)      :: 5 of 98
            Pseudo Genes (multiple problems)  :: 10 of 98
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866100
                     /organism="[Clostridium] scindens"
                     /mol_type="genomic DNA"
                     /isolate="DRR171924_bin_10928"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:29347"
                     /environmental_sample
                     /geo_loc_name="Japan"
                     /collection_date="2014"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEWDKC010000001-CEWDKC010000248
WGS_SCAFLD  NZ_CEWDKC010000001-NZ_CEWDKC010000248
//
LOCUS       NZ_CAWLXW010000000   5116899 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 isolate
            ena-yuan-GCF_000400345.1, whole genome shotgun sequencing project.
ACCESSION   NZ_CAWLXW000000000
VERSION     NZ_CAWLXW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017003
            Assembly: GCF_963864815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
  ORGANISM  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5116899)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWLXW000000000.1.
            The Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 whole
            genome shotgun (WGS) project has the project accession
            NZ_CAWLXW000000000.  This version of the project (01) has the
            accession number NZ_CAWLXW010000000, and consists of sequences
            CAWLXW010000001-CAWLXW010000387.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963864815.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:05:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,747
            CDSs (total)                      :: 4,705
            Genes (coding)                    :: 4,523
            CDSs (with protein)               :: 4,523
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 7, 7 (16S, 23S)
            tRNAs                             :: 22
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 58 of 182
            Pseudo Genes (incomplete)         :: 130 of 182
            Pseudo Genes (internal stop)      :: 41 of 182
            Pseudo Genes (multiple problems)  :: 41 of 182
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5116899
                     /organism="Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC
                     25920"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_000400345.1"
                     /db_xref="taxon:1224742"
WGS         CAWLXW010000001-CAWLXW010000387
WGS_SCAFLD  NZ_CAWLXW010000001-NZ_CAWLXW010000387
//
LOCUS       NZ_CAWOAC010000000   5340706 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_003050005.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWOAC000000000
VERSION     NZ_CAWOAC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017659
            Assembly: GCF_963879145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5340706)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWOAC000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWOAC000000000.  This version of the project
            (01) has the accession number NZ_CAWOAC010000000, and consists of
            sequences CAWOAC010000001-CAWOAC010000100.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963879145.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:02:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,702
            CDSs (total)                      :: 4,642
            Genes (coding)                    :: 4,570
            CDSs (with protein)               :: 4,570
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 18 of 72
            Pseudo Genes (incomplete)         :: 49 of 72
            Pseudo Genes (internal stop)      :: 15 of 72
            Pseudo Genes (multiple problems)  :: 9 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5340706
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_003050005.1"
                     /db_xref="taxon:29497"
WGS         CAWOAC010000001-CAWOAC010000100
WGS_SCAFLD  NZ_CAWOAC010000001-NZ_CAWOAC010000100
//
LOCUS       NZ_CAWQCV010000000   5773377 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_018440435.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQCV000000000
VERSION     NZ_CAWQCV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018534
            Assembly: GCF_963893235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5773377)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQCV000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWQCV000000000.  This version of the project
            (01) has the accession number NZ_CAWQCV010000000, and consists of
            sequences CAWQCV010000001-CAWQCV010000172.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963893235.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:04:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,254
            CDSs (total)                      :: 5,197
            Genes (coding)                    :: 5,073
            CDSs (with protein)               :: 5,073
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 47 of 124
            Pseudo Genes (incomplete)         :: 93 of 124
            Pseudo Genes (internal stop)      :: 28 of 124
            Pseudo Genes (multiple problems)  :: 38 of 124
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5773377
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_018440435.1"
                     /db_xref="taxon:246167"
WGS         CAWQCV010000001-CAWQCV010000172
WGS_SCAFLD  NZ_CAWQCV010000001-NZ_CAWQCV010000172
//
LOCUS       NZ_CAWOKV010000000   5824367 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_004346325.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWOKV000000000
VERSION     NZ_CAWOKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017872
            Assembly: GCF_963881895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5824367)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWOKV000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWOKV000000000.  This version of the project
            (01) has the accession number NZ_CAWOKV010000000, and consists of
            sequences CAWOKV010000001-CAWOKV010000066.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963881895.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:02:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,247
            CDSs (total)                      :: 5,155
            Genes (coding)                    :: 5,046
            CDSs (with protein)               :: 5,046
            Genes (RNA)                       :: 92
            rRNAs                             :: 3, 2 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 1 of 109
            Pseudo Genes (frameshifted)       :: 50 of 109
            Pseudo Genes (incomplete)         :: 78 of 109
            Pseudo Genes (internal stop)      :: 29 of 109
            Pseudo Genes (multiple problems)  :: 41 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5824367
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_004346325.1"
                     /db_xref="taxon:246167"
WGS         CAWOKV010000001-CAWOKV010000066
WGS_SCAFLD  NZ_CAWOKV010000001-NZ_CAWOKV010000066
//
LOCUS       NZ_CAWPOP010000000   5477446 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_013114445.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWPOP000000000
VERSION     NZ_CAWPOP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018243
            Assembly: GCF_963889865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5477446)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWPOP000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWPOP000000000.  This version of the project
            (01) has the accession number NZ_CAWPOP010000000, and consists of
            sequences CAWPOP010000001-CAWPOP010000062.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963889865.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:05:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,893
            CDSs (total)                      :: 4,817
            Genes (coding)                    :: 4,755
            CDSs (with protein)               :: 4,755
            Genes (RNA)                       :: 76
            rRNAs                             :: 1, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 29 of 62
            Pseudo Genes (incomplete)         :: 39 of 62
            Pseudo Genes (internal stop)      :: 16 of 62
            Pseudo Genes (multiple problems)  :: 18 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5477446
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_013114445.1"
                     /db_xref="taxon:29497"
WGS         CAWPOP010000001-CAWPOP010000062
WGS_SCAFLD  NZ_CAWPOP010000001-NZ_CAWPOP010000062
//
LOCUS       NZ_CAWMQT010000000   5845613 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_001368875.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWMQT000000000
VERSION     NZ_CAWMQT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017281
            Assembly: GCF_963870105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5845613)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWMQT000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWMQT000000000.  This version of the project
            (01) has the accession number NZ_CAWMQT010000000, and consists of
            sequences CAWMQT010000001-CAWMQT010000189.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963870105.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:07:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,313
            CDSs (total)                      :: 5,226
            Genes (coding)                    :: 5,088
            CDSs (with protein)               :: 5,088
            Genes (RNA)                       :: 87
            rRNAs                             :: 1, 3 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 79
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 56 of 138
            Pseudo Genes (incomplete)         :: 105 of 138
            Pseudo Genes (internal stop)      :: 30 of 138
            Pseudo Genes (multiple problems)  :: 45 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5845613
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_001368875.1"
                     /db_xref="taxon:246167"
WGS         CAWMQT010000001-CAWMQT010000189
WGS_SCAFLD  NZ_CAWMQT010000001-NZ_CAWMQT010000189
//
LOCUS       NZ_CAWNXJ010000000   5279504 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_003050445.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWNXJ000000000
VERSION     NZ_CAWNXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017672
            Assembly: GCF_963878555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5279504)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWNXJ000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWNXJ000000000.  This version of the project
            (01) has the accession number NZ_CAWNXJ010000000, and consists of
            sequences CAWNXJ010000001-CAWNXJ010000039.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963878555.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:08:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,624
            CDSs (total)                      :: 4,570
            Genes (coding)                    :: 4,534
            CDSs (with protein)               :: 4,534
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 1 of 36
            Pseudo Genes (frameshifted)       :: 15 of 36
            Pseudo Genes (incomplete)         :: 22 of 36
            Pseudo Genes (internal stop)      :: 7 of 36
            Pseudo Genes (multiple problems)  :: 8 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5279504
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_003050445.1"
                     /db_xref="taxon:29497"
WGS         CAWNXJ010000001-CAWNXJ010000039
WGS_SCAFLD  NZ_CAWNXJ010000001-NZ_CAWNXJ010000039
//
LOCUS       NZ_WWES01000000      6574774 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain DN2019, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WWES00000000
VERSION     NZ_WWES00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13390191
            Assembly: GCF_010815595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6574774)
  AUTHORS   Choi,H., Jinadatha,C., Chatterjee,P., Allton,Y. and Navarathna,D.H.
  TITLE     Draft Genome Sequence of an Unusually Multidrug-Resistant Strain of
            Achromobacter xylosoxidans from a Blood Isolate
  JOURNAL   Microbiol Resour Announc 9 (22), e00194-20 (2020)
   PUBMED   32467264
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6574774)
  AUTHORS   Choi,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2019) Research Service, Central Texas Veterans
            Health Care System, Central Texas Veterans Health Care System,
            Temple, TX 76504, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WWES00000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_WWES00000000.  This version of the
            project (01) has the accession number NZ_WWES01000000, and consists
            of sequences WWES01000001-WWES01000341.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Chetan Jinadatha, Department
            of Medicine, Central Texas Veterans Healthcare System, 1901 South
            Veterans Drive, Temple, TX 76504 USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 25-SEP-2019
            Assembly Method        :: SPAdes v. 3.7.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 442.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010815595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:35:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,266
            CDSs (total)                      :: 6,200
            Genes (coding)                    :: 6,042
            CDSs (with protein)               :: 6,042
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 6 of 158
            Pseudo Genes (frameshifted)       :: 14 of 158
            Pseudo Genes (incomplete)         :: 143 of 158
            Pseudo Genes (internal stop)      :: 2 of 158
            Pseudo Genes (multiple problems)  :: 7 of 158
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6574774
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="DN2019"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="USA: Temple, Texas"
                     /lat_lon="31.0982 N 97.3428 W"
                     /collection_date="2019-05-08"
                     /collected_by="Central Texas Veterans Health Care System"
                     /genotype="sequence type 182"
WGS         WWES01000001-WWES01000341
WGS_SCAFLD  NZ_WWES01000001-NZ_WWES01000341
//
LOCUS       NZ_CAWQGA010000000   5790567 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_017916495.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQGA000000000
VERSION     NZ_CAWQGA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018492
            Assembly: GCF_963894085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5790567)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQGA000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWQGA000000000.  This version of the project
            (01) has the accession number NZ_CAWQGA010000000, and consists of
            sequences CAWQGA010000001-CAWQGA010000479.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963894085.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:09:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,415
            CDSs (total)                      :: 5,330
            Genes (coding)                    :: 5,137
            CDSs (with protein)               :: 5,137
            Genes (RNA)                       :: 85
            rRNAs                             :: 3, 2 (16S, 23S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 193
            CDSs (without protein)            :: 193
            Pseudo Genes (ambiguous residues) :: 0 of 193
            Pseudo Genes (frameshifted)       :: 60 of 193
            Pseudo Genes (incomplete)         :: 151 of 193
            Pseudo Genes (internal stop)      :: 36 of 193
            Pseudo Genes (multiple problems)  :: 44 of 193
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5790567
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_017916495.1"
                     /db_xref="taxon:246167"
WGS         CAWQGA010000001-CAWQGA010000479
WGS_SCAFLD  NZ_CAWQGA010000001-NZ_CAWQGA010000479
//
LOCUS       NZ_CAWNBI010000000   5178103 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 isolate
            ena-yuan-GCF_002163755.1, whole genome shotgun sequencing project.
ACCESSION   NZ_CAWNBI000000000
VERSION     NZ_CAWNBI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017429
            Assembly: GCF_963872955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
  ORGANISM  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5178103)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWNBI000000000.1.
            The Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 whole
            genome shotgun (WGS) project has the project accession
            NZ_CAWNBI000000000.  This version of the project (01) has the
            accession number NZ_CAWNBI010000000, and consists of sequences
            CAWNBI010000001-CAWNBI010000003.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963872955.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:06:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,840
            CDSs (total)                      :: 4,663
            Genes (coding)                    :: 4,496
            CDSs (with protein)               :: 4,496
            Genes (RNA)                       :: 177
            rRNAs                             :: 13, 12, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 12, 11 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 134
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 73 of 167
            Pseudo Genes (incomplete)         :: 101 of 167
            Pseudo Genes (internal stop)      :: 43 of 167
            Pseudo Genes (multiple problems)  :: 44 of 167
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5178103
                     /organism="Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC
                     25920"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_002163755.1"
                     /db_xref="taxon:1224742"
WGS         CAWNBI010000001-CAWNBI010000003
WGS_SCAFLD  NZ_CAWNBI010000001-NZ_CAWNBI010000003
//
LOCUS       NZ_CAWQCR010000000   5833196 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_018440485.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQCR000000000
VERSION     NZ_CAWQCR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018535
            Assembly: GCF_963893175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5833196)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQCR000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWQCR000000000.  This version of the project
            (01) has the accession number NZ_CAWQCR010000000, and consists of
            sequences CAWQCR010000001-CAWQCR010000219.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963893175.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:06:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,283
            CDSs (total)                      :: 5,225
            Genes (coding)                    :: 5,072
            CDSs (with protein)               :: 5,072
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 56 of 153
            Pseudo Genes (incomplete)         :: 122 of 153
            Pseudo Genes (internal stop)      :: 30 of 153
            Pseudo Genes (multiple problems)  :: 48 of 153
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5833196
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_018440485.1"
                     /db_xref="taxon:246167"
WGS         CAWQCR010000001-CAWQCR010000219
WGS_SCAFLD  NZ_CAWQCR010000001-NZ_CAWQCR010000219
//
LOCUS       NZ_CAWNVZ010000000   5451996 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_003049945.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWNVZ000000000
VERSION     NZ_CAWNVZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017658
            Assembly: GCF_963878055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5451996)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWNVZ000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWNVZ000000000.  This version of the project
            (01) has the accession number NZ_CAWNVZ010000000, and consists of
            sequences CAWNVZ010000001-CAWNVZ010000054.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963878055.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:11:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,792
            CDSs (total)                      :: 4,699
            Genes (coding)                    :: 4,629
            CDSs (with protein)               :: 4,629
            Genes (RNA)                       :: 93
            rRNAs                             :: 5, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 5, 3 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 18 of 70
            Pseudo Genes (incomplete)         :: 53 of 70
            Pseudo Genes (internal stop)      :: 15 of 70
            Pseudo Genes (multiple problems)  :: 14 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5451996
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_003049945.1"
                     /db_xref="taxon:29497"
WGS         CAWNVZ010000001-CAWNVZ010000054
WGS_SCAFLD  NZ_CAWNVZ010000001-NZ_CAWNVZ010000054
//
LOCUS       NZ_CAWNZU010000000   5461378 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_003050165.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWNZU000000000
VERSION     NZ_CAWNZU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017664
            Assembly: GCF_963879045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5461378)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWNZU000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWNZU000000000.  This version of the project
            (01) has the accession number NZ_CAWNZU010000000, and consists of
            sequences CAWNZU010000001-CAWNZU010000078.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963879045.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:30:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,802
            CDSs (total)                      :: 4,744
            Genes (coding)                    :: 4,672
            CDSs (with protein)               :: 4,672
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 27 of 72
            Pseudo Genes (incomplete)         :: 48 of 72
            Pseudo Genes (internal stop)      :: 18 of 72
            Pseudo Genes (multiple problems)  :: 16 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5461378
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_003050165.1"
                     /db_xref="taxon:29497"
WGS         CAWNZU010000001-CAWNZU010000078
WGS_SCAFLD  NZ_CAWNZU010000001-NZ_CAWNZU010000078
//
LOCUS       NZ_CAWQXJ010000000   5414248 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_900089845.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQXJ000000000
VERSION     NZ_CAWQXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018906
            Assembly: GCF_963899365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5414248)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQXJ000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWQXJ000000000.  This version of the project
            (01) has the accession number NZ_CAWQXJ010000000, and consists of
            sequences CAWQXJ010000001-CAWQXJ010000056.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963899365.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:34:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,845
            CDSs (total)                      :: 4,694
            Genes (coding)                    :: 4,625
            CDSs (with protein)               :: 4,625
            Genes (RNA)                       :: 151
            rRNAs                             :: 8, 7, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 7, 4 (16S, 23S)
            tRNAs                             :: 128
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 25 of 69
            Pseudo Genes (incomplete)         :: 44 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 14 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5414248
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_900089845.1"
                     /db_xref="taxon:29497"
WGS         CAWQXJ010000001-CAWQXJ010000056
WGS_SCAFLD  NZ_CAWQXJ010000001-NZ_CAWQXJ010000056
//
LOCUS       NZ_CAWQSO010000000   4866117 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis isolate ena-yuan-GCF_022290265.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQSO000000000
VERSION     NZ_CAWQSO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018761
            Assembly: GCF_963896665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4866117)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQSO000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_CAWQSO000000000.  This version of the project
            (01) has the accession number NZ_CAWQSO010000000, and consists of
            sequences CAWQSO010000001-CAWQSO010000313.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963896665.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:35:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,797
            CDSs (total)                      :: 4,711
            Genes (coding)                    :: 4,538
            CDSs (with protein)               :: 4,538
            Genes (RNA)                       :: 86
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 76
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 173
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 23 of 173
            Pseudo Genes (incomplete)         :: 149 of 173
            Pseudo Genes (internal stop)      :: 18 of 173
            Pseudo Genes (multiple problems)  :: 15 of 173
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4866117
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_022290265.1"
                     /db_xref="taxon:676"
WGS         CAWQSO010000001-CAWQSO010000313
WGS_SCAFLD  NZ_CAWQSO010000001-NZ_CAWQSO010000313
//
LOCUS       NZ_CAWLJV010000000   5076254 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 isolate
            ena-yuan-GCF_000334195.1, whole genome shotgun sequencing project.
ACCESSION   NZ_CAWLJV000000000
VERSION     NZ_CAWLJV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115016980
            Assembly: GCF_963861305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
  ORGANISM  Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5076254)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWLJV000000000.1.
            The Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 whole
            genome shotgun (WGS) project has the project accession
            NZ_CAWLJV000000000.  This version of the project (01) has the
            accession number NZ_CAWLJV010000000, and consists of sequences
            CAWLJV010000001-CAWLJV010000213.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963861305.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:39:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,785
            CDSs (total)                      :: 4,725
            Genes (coding)                    :: 4,481
            CDSs (with protein)               :: 4,481
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 244
            CDSs (without protein)            :: 244
            Pseudo Genes (ambiguous residues) :: 0 of 244
            Pseudo Genes (frameshifted)       :: 117 of 244
            Pseudo Genes (incomplete)         :: 135 of 244
            Pseudo Genes (internal stop)      :: 42 of 244
            Pseudo Genes (multiple problems)  :: 44 of 244
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5076254
                     /organism="Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC
                     25920"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_000334195.1"
                     /db_xref="taxon:1224742"
WGS         CAWLJV010000001-CAWLJV010000213
WGS_SCAFLD  NZ_CAWLJV010000001-NZ_CAWLJV010000213
//
LOCUS       NZ_CAWQDY010000000   5716474 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae isolate ena-yuan-GCF_017916595.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQDY000000000
VERSION     NZ_CAWQDY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018494
            Assembly: GCF_963893835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5716474)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQDY000000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_CAWQDY000000000.  This version of the project
            (01) has the accession number NZ_CAWQDY010000000, and consists of
            sequences CAWQDY010000001-CAWQDY010000153.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963893835.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 18:44:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,195
            CDSs (total)                      :: 5,112
            Genes (coding)                    :: 4,987
            CDSs (with protein)               :: 4,987
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 59 of 125
            Pseudo Genes (incomplete)         :: 86 of 125
            Pseudo Genes (internal stop)      :: 31 of 125
            Pseudo Genes (multiple problems)  :: 42 of 125
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5716474
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_017916595.1"
                     /db_xref="taxon:246167"
WGS         CAWQDY010000001-CAWQDY010000153
WGS_SCAFLD  NZ_CAWQDY010000001-NZ_CAWQDY010000153
//
LOCUS       NZ_JBNAZB010000000   6123770 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio harveyi strain 1173, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBNAZB000000000
VERSION     NZ_JBNAZB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47165094
            Assembly: GCF_049704925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio harveyi
  ORGANISM  Vibrio harveyi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 6123770)
  AUTHORS   Saggese,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2025) Biology, Federico II University, Cinthia,
            Fuorigrotta Napoli 80125, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAZB000000000.1.
            The Vibrio harveyi whole genome shotgun (WGS) project has the
            project accession NZ_JBNAZB000000000.  This version of the project
            (01) has the accession number NZ_JBNAZB010000000, and consists of
            sequences JBNAZB010000001-JBNAZB010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. MAY-2011
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 125.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049704925.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 19:16:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,705
            CDSs (total)                      :: 5,578
            Genes (coding)                    :: 5,506
            CDSs (with protein)               :: 5,506
            Genes (RNA)                       :: 127
            rRNAs                             :: 6, 7, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 7, 3 (16S, 23S)
            tRNAs                             :: 107
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 25 of 72
            Pseudo Genes (incomplete)         :: 56 of 72
            Pseudo Genes (internal stop)      :: 20 of 72
            Pseudo Genes (multiple problems)  :: 23 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6123770
                     /organism="Vibrio harveyi"
                     /mol_type="genomic DNA"
                     /strain="1173"
                     /isolation_source="sea"
                     /host="Solea solea"
                     /db_xref="taxon:669"
                     /geo_loc_name="Italy"
                     /collection_date="2021-02-01"
                     /collected_by="Istituto zooprofilattico Portici"
WGS         JBNAZB010000001-JBNAZB010000078
WGS_SCAFLD  NZ_JBNAZB010000001-NZ_JBNAZB010000078
//
LOCUS       NZ_JAJLPG010000000   6345130 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2008Ycf49II, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJLPG000000000
VERSION     NZ_JAJLPG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379530
            Assembly: GCF_022525405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6345130)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6345130)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPG000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPG000000000.  This version of the
            project (01) has the accession number NZ_JAJLPG010000000, and
            consists of sequences JAJLPG010000001-JAJLPG010000629.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:36:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,027
            CDSs (total)                      :: 5,973
            Genes (coding)                    :: 5,841
            CDSs (with protein)               :: 5,841
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 12 of 132
            Pseudo Genes (frameshifted)       :: 9 of 132
            Pseudo Genes (incomplete)         :: 111 of 132
            Pseudo Genes (internal stop)      :: 4 of 132
            Pseudo Genes (multiple problems)  :: 4 of 132
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6345130
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2008Ycf49II"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2008"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPG010000001-JAJLPG010000629
WGS_SCAFLD  NZ_JAJLPG010000001-NZ_JAJLPG010000629
//
LOCUS       NZ_JAJLQI010000000   6593447 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2016Y70836825II, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQI000000000
VERSION     NZ_JAJLQI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379558
            Assembly: GCF_022524885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6593447)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6593447)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQI000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQI000000000.  This version of the
            project (01) has the accession number NZ_JAJLQI010000000, and
            consists of sequences JAJLQI010000001-JAJLQI010000474.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:34:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,315
            CDSs (total)                      :: 6,252
            Genes (coding)                    :: 6,054
            CDSs (with protein)               :: 6,054
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 67 of 198
            Pseudo Genes (incomplete)         :: 118 of 198
            Pseudo Genes (internal stop)      :: 16 of 198
            Pseudo Genes (multiple problems)  :: 3 of 198
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6593447
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2016Y70836825II"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2016"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQI010000001-JAJLQI010000474
WGS_SCAFLD  NZ_JAJLQI010000001-NZ_JAJLQI010000474
//
LOCUS       NZ_JAJLPE010000000   6203367 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2006Ycf465II, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLPE000000000
VERSION     NZ_JAJLPE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379528
            Assembly: GCF_022525445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6203367)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6203367)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPE000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPE000000000.  This version of the
            project (01) has the accession number NZ_JAJLPE010000000, and
            consists of sequences JAJLPE010000001-JAJLPE010000314.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:36:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,898
            CDSs (total)                      :: 5,836
            Genes (coding)                    :: 5,747
            CDSs (with protein)               :: 5,747
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 3 of 89
            Pseudo Genes (frameshifted)       :: 16 of 89
            Pseudo Genes (incomplete)         :: 70 of 89
            Pseudo Genes (internal stop)      :: 2 of 89
            Pseudo Genes (multiple problems)  :: 2 of 89
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6203367
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2006Ycf465II"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2006"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPE010000001-JAJLPE010000314
WGS_SCAFLD  NZ_JAJLPE010000001-NZ_JAJLPE010000314
//
LOCUS       NZ_JAJLQJ010000000   6355894 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2016Y70873530VII, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQJ000000000
VERSION     NZ_JAJLQJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379559
            Assembly: GCF_022524845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6355894)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6355894)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQJ000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQJ000000000.  This version of the
            project (01) has the accession number NZ_JAJLQJ010000000, and
            consists of sequences JAJLQJ010000001-JAJLQJ010000689.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:38:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,060
            CDSs (total)                      :: 5,999
            Genes (coding)                    :: 5,873
            CDSs (with protein)               :: 5,873
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 12 of 126
            Pseudo Genes (frameshifted)       :: 7 of 126
            Pseudo Genes (incomplete)         :: 108 of 126
            Pseudo Genes (internal stop)      :: 4 of 126
            Pseudo Genes (multiple problems)  :: 5 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6355894
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2016Y70873530VII"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2016"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQJ010000001-JAJLQJ010000689
WGS_SCAFLD  NZ_JAJLQJ010000001-NZ_JAJLQJ010000689
//
LOCUS       NZ_JAJLQH010000000   6513243 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2015Y70753104, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQH000000000
VERSION     NZ_JAJLQH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379557
            Assembly: GCF_022524875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6513243)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6513243)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQH000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQH000000000.  This version of the
            project (01) has the accession number NZ_JAJLQH010000000, and
            consists of sequences JAJLQH010000001-JAJLQH010000450.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:45:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,221
            CDSs (total)                      :: 6,160
            Genes (coding)                    :: 6,025
            CDSs (with protein)               :: 6,025
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 7 of 135
            Pseudo Genes (frameshifted)       :: 16 of 135
            Pseudo Genes (incomplete)         :: 114 of 135
            Pseudo Genes (internal stop)      :: 5 of 135
            Pseudo Genes (multiple problems)  :: 7 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6513243
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2015Y70753104"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2015"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQH010000001-JAJLQH010000450
WGS_SCAFLD  NZ_JAJLQH010000001-NZ_JAJLQH010000450
//
LOCUS       NZ_JAJLQA010000000   6793656 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2014Y70518553, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQA000000000
VERSION     NZ_JAJLQA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379550
            Assembly: GCF_022525005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6793656)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6793656)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQA000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQA000000000.  This version of the
            project (01) has the accession number NZ_JAJLQA010000000, and
            consists of sequences JAJLQA010000001-JAJLQA010000358.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525005.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:53:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,408
            CDSs (total)                      :: 6,348
            Genes (coding)                    :: 6,247
            CDSs (with protein)               :: 6,247
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 6 of 101
            Pseudo Genes (frameshifted)       :: 10 of 101
            Pseudo Genes (incomplete)         :: 83 of 101
            Pseudo Genes (internal stop)      :: 7 of 101
            Pseudo Genes (multiple problems)  :: 5 of 101
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6793656
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2014Y70518553"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2014"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQA010000001-JAJLQA010000358
WGS_SCAFLD  NZ_JAJLQA010000001-NZ_JAJLQA010000358
//
LOCUS       NZ_JAJLPF010000000   6510930 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2007Ycf565, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJLPF000000000
VERSION     NZ_JAJLPF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379529
            Assembly: GCF_022525425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6510930)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6510930)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPF000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPF000000000.  This version of the
            project (01) has the accession number NZ_JAJLPF010000000, and
            consists of sequences JAJLPF010000001-JAJLPF010000361.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:49:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,148
            CDSs (total)                      :: 6,086
            Genes (coding)                    :: 5,988
            CDSs (with protein)               :: 5,988
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 2 of 98
            Pseudo Genes (frameshifted)       :: 14 of 98
            Pseudo Genes (incomplete)         :: 84 of 98
            Pseudo Genes (internal stop)      :: 3 of 98
            Pseudo Genes (multiple problems)  :: 5 of 98
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6510930
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2007Ycf565"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2007"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPF010000001-JAJLPF010000361
WGS_SCAFLD  NZ_JAJLPF010000001-NZ_JAJLPF010000361
//
LOCUS       NZ_JAJLQL010000000   6510965 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2016Y70912118IV, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQL000000000
VERSION     NZ_JAJLQL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379561
            Assembly: GCF_022524795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6510965)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6510965)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQL000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQL000000000.  This version of the
            project (01) has the accession number NZ_JAJLQL010000000, and
            consists of sequences JAJLQL010000001-JAJLQL010000651.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:47:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,264
            CDSs (total)                      :: 6,201
            Genes (coding)                    :: 6,059
            CDSs (with protein)               :: 6,059
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 13 of 142
            Pseudo Genes (frameshifted)       :: 13 of 142
            Pseudo Genes (incomplete)         :: 113 of 142
            Pseudo Genes (internal stop)      :: 7 of 142
            Pseudo Genes (multiple problems)  :: 4 of 142
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6510965
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2016Y70912118IV"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2016"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQL010000001-JAJLQL010000651
WGS_SCAFLD  NZ_JAJLQL010000001-NZ_JAJLQL010000651
//
LOCUS       NZ_JAJLQD010000000   6522630 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2014Y70575019I, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQD000000000
VERSION     NZ_JAJLQD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379553
            Assembly: GCF_022524965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6522630)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6522630)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQD000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQD000000000.  This version of the
            project (01) has the accession number NZ_JAJLQD010000000, and
            consists of sequences JAJLQD010000001-JAJLQD010000513.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:54:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,183
            CDSs (total)                      :: 6,120
            Genes (coding)                    :: 5,966
            CDSs (with protein)               :: 5,966
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 15 of 154
            Pseudo Genes (frameshifted)       :: 52 of 154
            Pseudo Genes (incomplete)         :: 83 of 154
            Pseudo Genes (internal stop)      :: 12 of 154
            Pseudo Genes (multiple problems)  :: 8 of 154
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6522630
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2014Y70575019I"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2014"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQD010000001-JAJLQD010000513
WGS_SCAFLD  NZ_JAJLQD010000001-NZ_JAJLQD010000513
//
LOCUS       NZ_JARFYV010000000   3795096 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter nosocomialis strain HNAN7106, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARFYV000000000
VERSION     NZ_JARFYV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32638096
            Assembly: GCF_029194285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter nosocomialis
  ORGANISM  Acinetobacter nosocomialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3795096)
  AUTHORS   Li,Y.
  TITLE     Acinetobacter nosocomialis strains HNAN7106 WGS
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3795096)
  AUTHORS   Li,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2023) Lab medicine of Xiangya hospital, Central
            south university, Xiangya road, Changsha 410008, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARFYV000000000.1.
            The Acinetobacter nosocomialis whole genome shotgun (WGS) project
            has the project accession NZ_JARFYV000000000.  This version of the
            project (01) has the accession number NZ_JARFYV010000000, and
            consists of sequences JARFYV010000001-JARFYV010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v1.05
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029194285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,632
            CDSs (total)                      :: 3,556
            Genes (coding)                    :: 3,464
            CDSs (with protein)               :: 3,464
            Genes (RNA)                       :: 76
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 27 of 92
            Pseudo Genes (incomplete)         :: 63 of 92
            Pseudo Genes (internal stop)      :: 9 of 92
            Pseudo Genes (multiple problems)  :: 7 of 92
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795096
                     /organism="Acinetobacter nosocomialis"
                     /mol_type="genomic DNA"
                     /strain="HNAN7106"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:106654"
                     /geo_loc_name="China: Hunan"
                     /lat_lon="28.12 N 112.59 E"
                     /collection_date="2020"
                     /collected_by="Xiangya Hospital"
WGS         JARFYV010000001-JARFYV010000030
WGS_SCAFLD  NZ_JARFYV010000001-NZ_JARFYV010000030
//
LOCUS       NZ_JAJLPW010000000   6749629 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2012Ycf490IX, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLPW000000000
VERSION     NZ_JAJLPW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379546
            Assembly: GCF_022525125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6749629)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6749629)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPW000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPW000000000.  This version of the
            project (01) has the accession number NZ_JAJLPW010000000, and
            consists of sequences JAJLPW010000001-JAJLPW010000567.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525125.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:50:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,469
            CDSs (total)                      :: 6,412
            Genes (coding)                    :: 6,279
            CDSs (with protein)               :: 6,279
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 18 of 133
            Pseudo Genes (frameshifted)       :: 16 of 133
            Pseudo Genes (incomplete)         :: 103 of 133
            Pseudo Genes (internal stop)      :: 5 of 133
            Pseudo Genes (multiple problems)  :: 9 of 133
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6749629
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2012Ycf490IX"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2012"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPW010000001-JAJLPW010000567
WGS_SCAFLD  NZ_JAJLPW010000001-NZ_JAJLPW010000567
//
LOCUS       NZ_JAJLPK010000000   6764260 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2009Ycf805IV, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLPK000000000
VERSION     NZ_JAJLPK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379534
            Assembly: GCF_022525345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6764260)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6764260)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPK000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPK000000000.  This version of the
            project (01) has the accession number NZ_JAJLPK010000000, and
            consists of sequences JAJLPK010000001-JAJLPK010000658.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:59:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,512
            CDSs (total)                      :: 6,450
            Genes (coding)                    :: 6,297
            CDSs (with protein)               :: 6,297
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 13 of 153
            Pseudo Genes (frameshifted)       :: 16 of 153
            Pseudo Genes (incomplete)         :: 124 of 153
            Pseudo Genes (internal stop)      :: 5 of 153
            Pseudo Genes (multiple problems)  :: 5 of 153
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6764260
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2009Ycf805IV"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2009"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPK010000001-JAJLPK010000658
WGS_SCAFLD  NZ_JAJLPK010000001-NZ_JAJLPK010000658
//
LOCUS       NZ_JAJLPM010000000   6763742 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2010Ycf236IV, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLPM000000000
VERSION     NZ_JAJLPM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379536
            Assembly: GCF_022525305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6763742)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6763742)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPM000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPM000000000.  This version of the
            project (01) has the accession number NZ_JAJLPM010000000, and
            consists of sequences JAJLPM010000001-JAJLPM010000623.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:56:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,489
            CDSs (total)                      :: 6,427
            Genes (coding)                    :: 6,294
            CDSs (with protein)               :: 6,294
            Genes (RNA)                       :: 62
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 9 of 133
            Pseudo Genes (frameshifted)       :: 15 of 133
            Pseudo Genes (incomplete)         :: 109 of 133
            Pseudo Genes (internal stop)      :: 6 of 133
            Pseudo Genes (multiple problems)  :: 6 of 133
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6763742
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2010Ycf236IV"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2010"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPM010000001-JAJLPM010000623
WGS_SCAFLD  NZ_JAJLPM010000001-NZ_JAJLPM010000623
//
LOCUS       NZ_JBWYIJ010000000   3079512 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. 25-47-122, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIJ000000000
VERSION     NZ_JBWYIJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804052
            Assembly: GCF_056779695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. 25-47-122
  ORGANISM  Acinetobacter sp. 25-47-122
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3079512)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIJ000000000.1.
            The Acinetobacter sp. 25-47-122 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIJ000000000.  This version of the
            project (01) has the accession number NZ_JBWYIJ010000000, and
            consists of sequences JBWYIJ010000001-JBWYIJ010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 99.9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:58:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,939
            CDSs (total)                      :: 2,869
            Genes (coding)                    :: 2,837
            CDSs (with protein)               :: 2,837
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 9 of 32
            Pseudo Genes (incomplete)         :: 24 of 32
            Pseudo Genes (internal stop)      :: 6 of 32
            Pseudo Genes (multiple problems)  :: 5 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079512
                     /organism="Acinetobacter sp. 25-47-122"
                     /mol_type="genomic DNA"
                     /strain="25-47-122"
                     /isolation_source="ground, feces"
                     /host="Equus asinus somalicus"
                     /db_xref="taxon:3697660"
                     /geo_loc_name="Germany"
                     /collection_date="2024"
WGS         JBWYIJ010000001-JBWYIJ010000042
WGS_SCAFLD  NZ_JBWYIJ010000001-NZ_JBWYIJ010000042
//
LOCUS       NZ_JBWYIK010000000   3009800 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. 24-47-67, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIK000000000
VERSION     NZ_JBWYIK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804051
            Assembly: GCF_056779735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. 24-47-67
  ORGANISM  Acinetobacter sp. 24-47-67
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3009800)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIK000000000.1.
            The Acinetobacter sp. 24-47-67 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIK000000000.  This version of the
            project (01) has the accession number NZ_JBWYIK010000000, and
            consists of sequences JBWYIK010000001-JBWYIK010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 98.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779735.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:52:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,941
            CDSs (total)                      :: 2,869
            Genes (coding)                    :: 2,838
            CDSs (with protein)               :: 2,838
            Genes (RNA)                       :: 72
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 9 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 6 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009800
                     /organism="Acinetobacter sp. 24-47-67"
                     /mol_type="genomic DNA"
                     /strain="24-47-67"
                     /isolation_source="ground, feces"
                     /host="Madoqua kirkii"
                     /db_xref="taxon:3697659"
                     /geo_loc_name="Germany"
                     /collection_date="2024"
WGS         JBWYIK010000001-JBWYIK010000064
WGS_SCAFLD  NZ_JBWYIK010000001-NZ_JBWYIK010000064
//
LOCUS       NZ_JBWYII010000000   2959711 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. 25-47-130, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYII000000000
VERSION     NZ_JBWYII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804053
            Assembly: GCF_056779705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. 25-47-130
  ORGANISM  Acinetobacter sp. 25-47-130
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 2959711)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYII000000000.1.
            The Acinetobacter sp. 25-47-130 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYII000000000.  This version of the
            project (01) has the accession number NZ_JBWYII010000000, and
            consists of sequences JBWYII010000001-JBWYII010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 88.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779705.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:49:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,856
            CDSs (total)                      :: 2,785
            Genes (coding)                    :: 2,752
            CDSs (with protein)               :: 2,752
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 11 of 33
            Pseudo Genes (incomplete)         :: 23 of 33
            Pseudo Genes (internal stop)      :: 6 of 33
            Pseudo Genes (multiple problems)  :: 6 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959711
                     /organism="Acinetobacter sp. 25-47-130"
                     /mol_type="genomic DNA"
                     /strain="25-47-130"
                     /isolation_source="ground, feces"
                     /host="Equus grevyi"
                     /db_xref="taxon:3697661"
                     /geo_loc_name="Germany"
                     /collection_date="2024"
WGS         JBWYII010000001-JBWYII010000044
WGS_SCAFLD  NZ_JBWYII010000001-NZ_JBWYII010000044
//
LOCUS       NZ_JBWYIY010000000   3076741 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7511, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIY000000000
VERSION     NZ_JBWYIY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804036
            Assembly: GCF_056779975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7511
  ORGANISM  Acinetobacter sp. ANC_7511
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3076741)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIY000000000.1.
            The Acinetobacter sp. ANC_7511 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIY000000000.  This version of the
            project (01) has the accession number NZ_JBWYIY010000000, and
            consists of sequences JBWYIY010000001-JBWYIY010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:59:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,977
            CDSs (total)                      :: 2,905
            Genes (coding)                    :: 2,843
            CDSs (with protein)               :: 2,843
            Genes (RNA)                       :: 72
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 27 of 62
            Pseudo Genes (incomplete)         :: 46 of 62
            Pseudo Genes (internal stop)      :: 11 of 62
            Pseudo Genes (multiple problems)  :: 18 of 62
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076741
                     /organism="Acinetobacter sp. ANC_7511"
                     /mol_type="genomic DNA"
                     /strain="ANC_7511"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697644"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIY010000001-JBWYIY010000072
WGS_SCAFLD  NZ_JBWYIY010000001-NZ_JBWYIY010000072
//
LOCUS       NZ_JBWYIN010000000   3057816 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. 24-47-62, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIN000000000
VERSION     NZ_JBWYIN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804048
            Assembly: GCF_056779765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. 24-47-62
  ORGANISM  Acinetobacter sp. 24-47-62
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3057816)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIN000000000.1.
            The Acinetobacter sp. 24-47-62 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIN000000000.  This version of the
            project (01) has the accession number NZ_JBWYIN010000000, and
            consists of sequences JBWYIN010000001-JBWYIN010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:50:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,977
            CDSs (total)                      :: 2,907
            Genes (coding)                    :: 2,853
            CDSs (with protein)               :: 2,853
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 25 of 54
            Pseudo Genes (internal stop)      :: 13 of 54
            Pseudo Genes (multiple problems)  :: 7 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3057816
                     /organism="Acinetobacter sp. 24-47-62"
                     /mol_type="genomic DNA"
                     /strain="24-47-62"
                     /isolation_source="ground, feces"
                     /host="Sus scrofa f. domestica"
                     /db_xref="taxon:3697656"
                     /geo_loc_name="Germany"
                     /collection_date="2024"
WGS         JBWYIN010000001-JBWYIN010000059
WGS_SCAFLD  NZ_JBWYIN010000001-NZ_JBWYIN010000059
//
LOCUS       NZ_JBWYIL010000000   2981010 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. 24-47-66, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIL000000000
VERSION     NZ_JBWYIL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804050
            Assembly: GCF_056779755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. 24-47-66
  ORGANISM  Acinetobacter sp. 24-47-66
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 2981010)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIL000000000.1.
            The Acinetobacter sp. 24-47-66 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIL000000000.  This version of the
            project (01) has the accession number NZ_JBWYIL010000000, and
            consists of sequences JBWYIL010000001-JBWYIL010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.9x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:44:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,870
            CDSs (total)                      :: 2,799
            Genes (coding)                    :: 2,758
            CDSs (with protein)               :: 2,758
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 24 of 41
            Pseudo Genes (incomplete)         :: 19 of 41
            Pseudo Genes (internal stop)      :: 14 of 41
            Pseudo Genes (multiple problems)  :: 13 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981010
                     /organism="Acinetobacter sp. 24-47-66"
                     /mol_type="genomic DNA"
                     /strain="24-47-66"
                     /isolation_source="ground, feces"
                     /host="Madoqua kirkii"
                     /db_xref="taxon:3697658"
                     /geo_loc_name="Germany"
                     /collection_date="2024"
WGS         JBWYIL010000001-JBWYIL010000055
WGS_SCAFLD  NZ_JBWYIL010000001-NZ_JBWYIL010000055
//
LOCUS       NZ_JBWYJA010000000   3067549 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7503, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYJA000000000
VERSION     NZ_JBWYJA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804034
            Assembly: GCF_056780035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7503
  ORGANISM  Acinetobacter sp. ANC_7503
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3067549)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYJA000000000.1.
            The Acinetobacter sp. ANC_7503 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYJA000000000.  This version of the
            project (01) has the accession number NZ_JBWYJA010000000, and
            consists of sequences JBWYJA010000001-JBWYJA010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:52:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,980
            CDSs (total)                      :: 2,909
            Genes (coding)                    :: 2,859
            CDSs (with protein)               :: 2,859
            Genes (RNA)                       :: 71
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 14 of 50
            Pseudo Genes (incomplete)         :: 40 of 50
            Pseudo Genes (internal stop)      :: 8 of 50
            Pseudo Genes (multiple problems)  :: 11 of 50
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067549
                     /organism="Acinetobacter sp. ANC_7503"
                     /mol_type="genomic DNA"
                     /strain="ANC_7503"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697642"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYJA010000001-JBWYJA010000047
WGS_SCAFLD  NZ_JBWYJA010000001-NZ_JBWYJA010000047
//
LOCUS       NZ_JBWYIZ010000000   3000140 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7504, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIZ000000000
VERSION     NZ_JBWYIZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804035
            Assembly: GCF_056779995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7504
  ORGANISM  Acinetobacter sp. ANC_7504
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3000140)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIZ000000000.1.
            The Acinetobacter sp. ANC_7504 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIZ000000000.  This version of the
            project (01) has the accession number NZ_JBWYIZ010000000, and
            consists of sequences JBWYIZ010000001-JBWYIZ010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.3x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:52:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,916
            CDSs (total)                      :: 2,844
            Genes (coding)                    :: 2,800
            CDSs (with protein)               :: 2,800
            Genes (RNA)                       :: 72
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 13 of 44
            Pseudo Genes (incomplete)         :: 33 of 44
            Pseudo Genes (internal stop)      :: 9 of 44
            Pseudo Genes (multiple problems)  :: 10 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000140
                     /organism="Acinetobacter sp. ANC_7504"
                     /mol_type="genomic DNA"
                     /strain="ANC_7504"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697643"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIZ010000001-JBWYIZ010000051
WGS_SCAFLD  NZ_JBWYIZ010000001-NZ_JBWYIZ010000051
//
LOCUS       NZ_AEFX01000000      4127062 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus atrophaeus BACI051-E, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEFX00000000
VERSION     NZ_AEFX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN01816425
            Assembly: GCF_000204885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus atrophaeus BACI051-E
  ORGANISM  Bacillus atrophaeus BACI051-E
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4127062)
  AUTHORS   Gibbons,H.S., Broomall,S.M., McNew,L.A., Daligault,H., Chapman,C.,
            Bruce,D., Karavis,M., Krepps,M., McGregor,P.A., Hong,C., Park,K.H.,
            Akmal,A., Feldman,A., Lin,J.S., Chang,W.E., Higgs,B.W., Demirev,P.,
            Lindquist,J., Liem,A., Fochler,E., Read,T.D., Tapia,R., Johnson,S.,
            Bishop-Lilly,K.A., Detter,C., Han,C., Sozhamannan,S.,
            Rosenzweig,C.N. and Skowronski,E.W.
  TITLE     Genomic signatures of strain selection and enhancement in Bacillus
            atrophaeus var. globigii, a historical biowarfare simulant
  JOURNAL   PLoS One 6 (3), e17836 (2011)
   PUBMED   21464989
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127062)
  AUTHORS   Gibbons,H.S., Broomall,S., McNew,L.A., Karavis,M., McGregor,P.,
            Liem,A., Fochler,E., Donarum,G., Rosenzweig,C.N. and Skowronski,E.
  CONSRTM   Transformational Medical Technologies Program
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2010) Genomics Integrated Product Team, US Army
            Edgewood Chemical Biological Center, 5183 Blackhawk Rd, Aberdeen
            Proving Ground, MD 21010-5424, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEFX00000000.1.
            The Bacillus atrophaeus BACI051-E whole genome shotgun (WGS)
            project has the project accession NZ_AEFX00000000.  This version of
            the project (01) has the accession number NZ_AEFX01000000, and
            consists of sequences AEFX01000001-AEFX01000035.
            Source DNA available from Henry S. Gibbons.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.0.01.14
            Genome Coverage       :: 36x
            Sequencing Technology :: 454 FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000204885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:47:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,244
            CDSs (total)                      :: 4,169
            Genes (coding)                    :: 3,989
            CDSs (with protein)               :: 3,989
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 109 of 180
            Pseudo Genes (incomplete)         :: 114 of 180
            Pseudo Genes (internal stop)      :: 24 of 180
            Pseudo Genes (multiple problems)  :: 61 of 180
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127062
                     /organism="Bacillus atrophaeus BACI051-E"
                     /mol_type="genomic DNA"
                     /strain="BACI051-E"
                     /db_xref="taxon:882455"
WGS         AEFX01000001-AEFX01000035
WGS_SCAFLD  NZ_AEFX01000001-NZ_AEFX01000035
//
LOCUS       NZ_AZYP01000000      4497820 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus haynesii strain S 16, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AZYP00000000
VERSION     NZ_AZYP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02210741
            Assembly: GCF_000559105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus haynesii
  ORGANISM  Bacillus haynesii
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4497820)
  AUTHORS   Siddiqa,S.M. and Kamal,M.
  TITLE     Genome sequencing and annotation of Bacillus licheniformis isolate
            S16 from soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4497820)
  AUTHORS   Siddiqa,S.M. and Kamal,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2013) Department of Biotechnology, University of
            Karachi, University Road, Karachi, Sindh 75270, Pakistan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AZYP00000000.1.
            The Bacillus haynesii whole genome shotgun (WGS) project has the
            project accession NZ_AZYP00000000.  This version of the project
            (01) has the accession number NZ_AZYP01000000, and consists of
            sequences AZYP01000001-AZYP01000194.
            Bacteria and source DNA available from Syeda Mariam Siddiqa,
            Department of Biotechnology, University of Karachi, Pakistan.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            The organism was changed from 'Bacillus licheniformis S 16' to
            'Bacillus haynesii' in August 2018.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_000559105.1
            Current Name        :: Bacillus haynesii
            Previous Name       :: Bacillus licheniformis S 16
            Date Updated        :: 2018-08-29
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_001969855.1
            A1 Name             :: Bacillus haynesii
            A1 ANI              :: 98.99672%
            A1 Query Coverage   :: 91.66%
            A1 Subject Coverage :: 94.15%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000008425.1
            A2 Name             :: Bacillus licheniformis S 16
            A2 ANI              :: 95.64005%
            A2 Query Coverage   :: 85.15%
            A2 Subject Coverage :: 90.7%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: DNASTAR Lasergene v. 6 (Aug-16-2013)
            Genome Coverage       :: 15x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000559105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:51:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,801
            CDSs (total)                      :: 4,670
            Genes (coding)                    :: 4,331
            CDSs (with protein)               :: 4,331
            Genes (RNA)                       :: 131
            rRNAs                             :: 8, 20, 18 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 19, 17 (16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 339
            CDSs (without protein)            :: 339
            Pseudo Genes (ambiguous residues) :: 0 of 339
            Pseudo Genes (frameshifted)       :: 203 of 339
            Pseudo Genes (incomplete)         :: 161 of 339
            Pseudo Genes (internal stop)      :: 23 of 339
            Pseudo Genes (multiple problems)  :: 39 of 339
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4497820
                     /organism="Bacillus haynesii"
                     /mol_type="genomic DNA"
                     /strain="S 16"
                     /isolation_source="soil"
                     /db_xref="taxon:1925021"
                     /geo_loc_name="Pakistan"
                     /collection_date="2005-06"
WGS         AZYP01000001-AZYP01000194
WGS_SCAFLD  NZ_AZYP01000001-NZ_AZYP01000194
//
LOCUS       NZ_AHCR01000000      5849298 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus BAG1X1-2, whole genome shotgun sequencing project.
ACCESSION   NZ_AHCR00000000
VERSION     NZ_AHCR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02596803
            Assembly: GCF_000291035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus BAG1X1-2
  ORGANISM  Bacillus cereus BAG1X1-2
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5849298)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Bacillus cereus BAG1X1-2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5849298)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHCR00000000.1.
            The Bacillus cereus BAG1X1-2 whole genome shotgun (WGS) project has
            the project accession NZ_AHCR00000000.  This version of the project
            (01) has the accession number NZ_AHCR01000000, and consists of
            sequences AHCR01000001-AHCR01000079.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R38642
            Assembly Name         :: Baci_cere_BAG1X1-2_G13151_V1
            Genome Coverage       :: 152.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000291035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:47:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,017
            CDSs (total)                      :: 5,928
            Genes (coding)                    :: 5,729
            CDSs (with protein)               :: 5,729
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 3, 3 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 199
            CDSs (without protein)            :: 199
            Pseudo Genes (ambiguous residues) :: 0 of 199
            Pseudo Genes (frameshifted)       :: 78 of 199
            Pseudo Genes (incomplete)         :: 134 of 199
            Pseudo Genes (internal stop)      :: 52 of 199
            Pseudo Genes (multiple problems)  :: 49 of 199
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5849298
                     /organism="Bacillus cereus BAG1X1-2"
                     /mol_type="genomic DNA"
                     /strain="BAG1X1-2"
                     /db_xref="taxon:1053171"
WGS         AHCR01000001-AHCR01000079
WGS_SCAFLD  NZ_JH792222-NZ_JH792231
//
LOCUS       NZ_AFFP02000000      2453490 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Avibacterium paragallinarum 72, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AFFP00000000
VERSION     NZ_AFFP00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470228
            Assembly: GCF_000221945.2
KEYWORDS    WGS; RefSeq.
SOURCE      Avibacterium paragallinarum 72
  ORGANISM  Avibacterium paragallinarum 72
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Avibacterium.
REFERENCE   1  (bases 1 to 2453490)
  AUTHORS   Requena,D., Chumbe,A., Torres,M., Alzamora,O., Ramirez,M.,
            Valdivia-Olarte,H., Gutierrez,A.H., Izquierdo-Lara,R.,
            Saravia,L.E., Zavaleta,M., Tataje-Lavanda,L., Best,I.,
            Fernandez-Sanchez,M., Icochea,E., Zimic,M. and Fernandez-Diaz,M.
  TITLE     Genome sequence and comparative analysis of Avibacterium
            paragallinarum
  JOURNAL   Bioinformation 9 (10), 528-536 (2013)
   PUBMED   23861570
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2453490)
  AUTHORS   Requena,D., Chumbe,A., Torres,M., Alzamora,O., Ramirez,M.,
            Valdivia,H., Gutierrez,A.H., Izquierdo-Lara,R., Saravia,L.E.,
            Zavaleta,M., Tataje-Lavanda,L., Best,I., Fernandez-Sanchez,M.,
            Icochea,E., Zimic,M. and Fernandez-Diaz,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2013) Laboratorio de Bioinformatica, FARVET
            S.A.C., 395 Cristobal de Peralta Sur, Urb. Valle Hermoso, Surco,
            Lima 15023, Peru
REFERENCE   3  (bases 1 to 2453490)
  AUTHORS   Fernandez,M., Zimic,M., Requena,D., Torres,M., Chumbe,A.,
            Garcia,I., Best,I., Tataje,L., Saravia,L., Izquierdo,R.,
            Valdivia,H., Zavaleta,M., Gutierrez,A., Tarazona,D. and
            Maturrano,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2011) Laboratory FARVET, Ica, Peru
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AFFP00000000.2.
            
            On Jun 29, 2013 this sequence version replaced NZ_AFFP00000000.1.
            The Avibacterium paragallinarum 72 whole genome shotgun (WGS)
            project has the project accession NZ_AFFP00000000.  This version of
            the project (02) has the accession number NZ_AFFP02000000, and
            consists of sequences AFFP02000001-AFFP02000075.
            Bacteria and source DNA available from FARVET S.A.C., 395 Cristobal
            de Peralta Sur, Urb. Valle Hermoso, Surco, Lima 15023, Peru.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: GS De Novo Assembler v. 2.6
            Assembly Name         :: ASM22194v4
            Genome Coverage       :: 25.0x
            Sequencing Technology :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000221945.2-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:53:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,429
            CDSs (total)                      :: 2,371
            Genes (coding)                    :: 2,302
            CDSs (with protein)               :: 2,302
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 35 of 69
            Pseudo Genes (incomplete)         :: 34 of 69
            Pseudo Genes (internal stop)      :: 7 of 69
            Pseudo Genes (multiple problems)  :: 7 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453490
                     /organism="Avibacterium paragallinarum 72"
                     /mol_type="genomic DNA"
                     /strain="72"
                     /isolation_source="infraorbital sinuses of a broiler from
                     an infectious coryza outbreak"
                     /host="Gallus gallus"
                     /db_xref="taxon:948565"
                     /geo_loc_name="Peru: Ica"
                     /collection_date="2010-02"
WGS         AFFP02000001-AFFP02000075
WGS_SCAFLD  NZ_AFFP02000001-NZ_AFFP02000075
//
LOCUS       NZ_JEML01000000      5111056 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas hydrophila 226, whole genome shotgun sequencing project.
ACCESSION   NZ_JEML00000000
VERSION     NZ_JEML00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02643440
            Assembly: GCF_000586055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas hydrophila 226
  ORGANISM  Aeromonas hydrophila 226
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 5111056)
  AUTHORS   Chan,X.Y. and Chan,K.G.
  TITLE     Draft Genome of Aeromonas hydrophila 226
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5111056)
  AUTHORS   Chan,X.Y. and Chan,K.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2014) Genetics, University of Malaya, Microbiome
            Lab 1,2 &3, Level 1 High Impact Research Building, Kuala Lumpur,
            Kuala Lumpur 50603, Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JEML00000000.1.
            The Aeromonas hydrophila 226 whole genome shotgun (WGS) project has
            the project accession NZ_JEML00000000.  This version of the project
            (01) has the accession number NZ_JEML01000000, and consists of
            sequences JEML01000001-JEML01000135.
            Bacteria available from: Microbiome 1,2 & 3, Level 1, High Impact
            Research Building, University of Malaya, 50603 Kuala Lumpur.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomic Workbench v. 5.1
            Genome Coverage       :: 86.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000586055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:43:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,838
            CDSs (total)                      :: 4,732
            Genes (coding)                    :: 4,658
            CDSs (with protein)               :: 4,658
            Genes (RNA)                       :: 106
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 19 of 74
            Pseudo Genes (incomplete)         :: 59 of 74
            Pseudo Genes (internal stop)      :: 8 of 74
            Pseudo Genes (multiple problems)  :: 10 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5111056
                     /organism="Aeromonas hydrophila 226"
                     /mol_type="genomic DNA"
                     /strain="226"
                     /isolation_source="human urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1268078"
                     /geo_loc_name="Malaysia: Kuala Lumpur"
                     /collection_date="1983-02-13"
WGS         JEML01000001-JEML01000135
WGS_SCAFLD  NZ_JEML01000001-NZ_JEML01000135
//
LOCUS       NZ_AHFD01000000      5657298 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus VD140, whole genome shotgun sequencing project.
ACCESSION   NZ_AHFD00000000
VERSION     NZ_AHFD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02596867
            Assembly: GCF_000399545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus VD140
  ORGANISM  Bacillus cereus VD140
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5657298)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Walker,B.,
            Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B.,
            Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M.,
            Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S.,
            Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C.,
            Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S.,
            Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Bacillus cereus VD140
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5657298)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Walker,B.,
            Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B.,
            Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M.,
            Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S.,
            Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C.,
            Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S.,
            Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHFD00000000.1.
            The Bacillus cereus VD140 whole genome shotgun (WGS) project has
            the project accession NZ_AHFD00000000.  This version of the project
            (01) has the accession number NZ_AHFD01000000, and consists of
            sequences AHFD01000001-AHFD01000065.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R41856
            Assembly Name         :: Baci_cere_VD140_V1
            Genome Coverage       :: 134.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000399545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:52:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,837
            CDSs (total)                      :: 5,738
            Genes (coding)                    :: 5,522
            CDSs (with protein)               :: 5,522
            Genes (RNA)                       :: 99
            rRNAs                             :: 9, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 16S)
            partial rRNAs                     :: 7, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 216
            CDSs (without protein)            :: 216
            Pseudo Genes (ambiguous residues) :: 0 of 216
            Pseudo Genes (frameshifted)       :: 67 of 216
            Pseudo Genes (incomplete)         :: 160 of 216
            Pseudo Genes (internal stop)      :: 40 of 216
            Pseudo Genes (multiple problems)  :: 44 of 216
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5657298
                     /organism="Bacillus cereus VD140"
                     /mol_type="genomic DNA"
                     /strain="VD140"
                     /db_xref="taxon:1053235"
WGS         AHFD01000001-AHFD01000065
WGS_SCAFLD  NZ_KB976801-NZ_KB976816
//
LOCUS       NZ_LUHP01000000      4701486 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain YK, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LUHP00000000
VERSION     NZ_LUHP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04529550
            Assembly: GCF_002093675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4701486)
  AUTHORS   Long,M., Nielsen,T.K., Leisner,J.J., Hansen,L.H., Shen,Z.X.,
            Zhang,Q.Q. and Li,A.
  TITLE     Aeromonas salmonicida subsp. salmonicida strains isolated from
            Chinese freshwater fish contain a novel genomic island and possible
            regional-specific mobile genetic elements profiles
  JOURNAL   FEMS Microbiol Lett 363 (17) (2016)
   PUBMED   27493011
REFERENCE   2  (bases 1 to 4701486)
  AUTHORS   Long,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2016) Healthy Aquaculture Discipline Group,
            Institute of Hydrobiology, Chinese Academy of Sciences, No. 7,
            South Road of East Lake, Wuchang District, Wuhan, Hubei 430070,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LUHP00000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_LUHP00000000.  This version of the project
            (01) has the accession number NZ_LUHP01000000, and consists of
            sequences LUHP01000001-LUHP01000204.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: QUAST v. 3.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 85.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002093675.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:00:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,574
            CDSs (total)                      :: 4,465
            Genes (coding)                    :: 4,179
            CDSs (with protein)               :: 4,179
            Genes (RNA)                       :: 109
            rRNAs                             :: 11, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 4 (5S, 16S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 286
            CDSs (without protein)            :: 286
            Pseudo Genes (ambiguous residues) :: 0 of 286
            Pseudo Genes (frameshifted)       :: 133 of 286
            Pseudo Genes (incomplete)         :: 138 of 286
            Pseudo Genes (internal stop)      :: 33 of 286
            Pseudo Genes (multiple problems)  :: 17 of 286
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701486
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="YK"
                     /isolation_source="water"
                     /host="Coreius guichenoti"
                     /db_xref="taxon:645"
                     /geo_loc_name="China: Sichuan"
                     /collection_date="2012-04"
WGS         LUHP01000001-LUHP01000204
WGS_SCAFLD  NZ_LUHP01000001-NZ_LUHP01000204
//
LOCUS       NZ_AHDC01000000      5765165 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus BAG3O-2, whole genome shotgun sequencing project.
ACCESSION   NZ_AHDC00000000
VERSION     NZ_AHDC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02596814
            Assembly: GCF_000291535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus BAG3O-2
  ORGANISM  Bacillus cereus BAG3O-2
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5765165)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Bacillus cereus BAG3O-2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5765165)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHDC00000000.1.
            The Bacillus cereus BAG3O-2 whole genome shotgun (WGS) project has
            the project accession NZ_AHDC00000000.  This version of the project
            (01) has the accession number NZ_AHDC01000000, and consists of
            sequences AHDC01000001-AHDC01000067.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R38742
            Assembly Name         :: Baci_cere_BAG3O-2_G13191_V1
            Genome Coverage       :: 160.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000291535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:54:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,929
            CDSs (total)                      :: 5,838
            Genes (coding)                    :: 5,643
            CDSs (with protein)               :: 5,643
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 76
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 195
            CDSs (without protein)            :: 195
            Pseudo Genes (ambiguous residues) :: 0 of 195
            Pseudo Genes (frameshifted)       :: 62 of 195
            Pseudo Genes (incomplete)         :: 154 of 195
            Pseudo Genes (internal stop)      :: 34 of 195
            Pseudo Genes (multiple problems)  :: 42 of 195
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5765165
                     /organism="Bacillus cereus BAG3O-2"
                     /mol_type="genomic DNA"
                     /strain="BAG3O-2"
                     /db_xref="taxon:1053182"
WGS         AHDC01000001-AHDC01000067
WGS_SCAFLD  NZ_JH791899-NZ_JH791909
//
LOCUS       NZ_LUHO01000000      4790288 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain BG, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LUHO00000000
VERSION     NZ_LUHO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04529529
            Assembly: GCF_002093695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4790288)
  AUTHORS   Long,M., Nielsen,T.K., Leisner,J.J., Hansen,L.H., Shen,Z.X.,
            Zhang,Q.Q. and Li,A.
  TITLE     Aeromonas salmonicida subsp. salmonicida strains isolated from
            Chinese freshwater fish contain a novel genomic island and possible
            regional-specific mobile genetic elements profiles
  JOURNAL   FEMS Microbiol Lett 363 (17) (2016)
   PUBMED   27493011
REFERENCE   2  (bases 1 to 4790288)
  AUTHORS   Long,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2016) Healthy Aquaculture Discipline Group,
            Institute of Hydrobiology, Chinese Academy of Sciences, No. 7,
            South Road of East Lake, Wuchang District, Wuhan, Hubei 430070,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LUHO00000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_LUHO00000000.  This version of the project
            (01) has the accession number NZ_LUHO01000000, and consists of
            sequences LUHO01000001-LUHO01000236.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: QUAST v. 3.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 85.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002093695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:18:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,705
            CDSs (total)                      :: 4,582
            Genes (coding)                    :: 4,320
            CDSs (with protein)               :: 4,320
            Genes (RNA)                       :: 123
            rRNAs                             :: 10, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 105
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 262
            CDSs (without protein)            :: 262
            Pseudo Genes (ambiguous residues) :: 0 of 262
            Pseudo Genes (frameshifted)       :: 134 of 262
            Pseudo Genes (incomplete)         :: 117 of 262
            Pseudo Genes (internal stop)      :: 34 of 262
            Pseudo Genes (multiple problems)  :: 22 of 262
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4790288
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="BG"
                     /isolation_source="water"
                     /host="Coregonus peled"
                     /db_xref="taxon:645"
                     /geo_loc_name="China: Qinghai"
                     /collection_date="2013-10"
WGS         LUHO01000001-LUHO01000236
WGS_SCAFLD  NZ_LUHO01000001-NZ_LUHO01000236
//
LOCUS       NZ_PQVK01000000      2460178 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Avibacterium paragallinarum strain CCUG 12835, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PQVK00000000
VERSION     NZ_PQVK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08450198
            Assembly: GCF_002921155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Avibacterium paragallinarum
  ORGANISM  Avibacterium paragallinarum
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Avibacterium.
REFERENCE   1  (bases 1 to 2460178)
  AUTHORS   Christensen,H.
  TITLE     Classification genera of Pasteurellaceae by whole genome sequence
            comparison
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2460178)
  AUTHORS   Christensen,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-FEB-2018) Veterinary Animal Sciences, University of
            Copenhagen, Stigbojlen 4, Frederiksberg, Select State 1870 C,
            Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PQVK00000000.1.
            The Avibacterium paragallinarum whole genome shotgun (WGS) project
            has the project accession NZ_PQVK00000000.  This version of the
            project (01) has the accession number NZ_PQVK01000000, and consists
            of sequences PQVK01000001-PQVK01000335.
            Bacteria and source DNA available from Department of Veterinary
            Animal Sciences.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This WGS genome was mistakenly submitted as Avibacterium gallinarum
            NCTC 11188 (PRJNA432501, SAMN08450254). It was corrected to
            Avibacterium paragallinarum strain CCUG 12835 in Feb. 2018. The
            Avibacterium gallinarum NCTC 11188 genome is in WGS project
            accession PQVJ00000000.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2009
            Assembly Method        :: Newbler v. MAY-2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002921155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:58:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,637
            CDSs (total)                      :: 2,579
            Genes (coding)                    :: 2,426
            CDSs (with protein)               :: 2,426
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 70 of 153
            Pseudo Genes (incomplete)         :: 75 of 153
            Pseudo Genes (internal stop)      :: 19 of 153
            Pseudo Genes (multiple problems)  :: 10 of 153
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2460178
                     /organism="Avibacterium paragallinarum"
                     /mol_type="genomic DNA"
                     /strain="CCUG 12835"
                     /host="chicken"
                     /type_material="type strain of Avibacterium
                     paragallinarum"
                     /db_xref="taxon:728"
                     /geo_loc_name="Germany"
                     /collection_date="1970"
WGS         PQVK01000001-PQVK01000335
WGS_SCAFLD  NZ_PQVK01000001-NZ_PQVK01000335
//
LOCUS       NZ_NKWD01000000      4926993 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas hydrophila strain PAQ091014-9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NKWD00000000
VERSION     NZ_NKWD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07312775
            Assembly: GCF_006243275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas hydrophila
  ORGANISM  Aeromonas hydrophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4926993)
  AUTHORS   Rangel,L.T., Marden,J., Colston,S., Setubal,J.C., Graf,J. and
            Gogarten,J.P.
  TITLE     Identification and characterization of putative Aeromonas spp. T3SS
            effectors
  JOURNAL   PLoS One 14 (6), e0214035 (2019)
   PUBMED   31163020
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4926993)
  AUTHORS   Colston,S.M. and Graf,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2017) Molecular and Cell Biology, University of
            Connecticut, 91 N. Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NKWD00000000.1.
            The Aeromonas hydrophila whole genome shotgun (WGS) project has the
            project accession NZ_NKWD00000000.  This version of the project
            (01) has the accession number NZ_NKWD01000000, and consists of
            sequences NKWD01000001-NKWD01000072.
            Bacteria available from Graf lab, University of Connecticut.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. CLC Genomics workbench 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006243275.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:43:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,614
            CDSs (total)                      :: 4,514
            Genes (coding)                    :: 4,448
            CDSs (with protein)               :: 4,448
            Genes (RNA)                       :: 100
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 90
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 27 of 66
            Pseudo Genes (incomplete)         :: 41 of 66
            Pseudo Genes (internal stop)      :: 10 of 66
            Pseudo Genes (multiple problems)  :: 11 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4926993
                     /organism="Aeromonas hydrophila"
                     /mol_type="genomic DNA"
                     /strain="PAQ091014-9"
                     /isolation_source="kidney"
                     /host="Oncorhynchus mykiss"
                     /db_xref="taxon:644"
WGS         NKWD01000001-NKWD01000072
WGS_SCAFLD  NZ_NKWD01000001-NZ_NKWD01000072
//
LOCUS       NZ_AHEB01000000      5694837 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus HuB1-1, whole genome shotgun sequencing project.
ACCESSION   NZ_AHEB00000000
VERSION     NZ_AHEB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02596839
            Assembly: GCF_000293725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus HuB1-1
  ORGANISM  Bacillus cereus HuB1-1
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5694837)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Bacillus cereus HuB1-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5694837)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHEB00000000.1.
            The Bacillus cereus HuB1-1 whole genome shotgun (WGS) project has
            the project accession NZ_AHEB00000000.  This version of the project
            (01) has the accession number NZ_AHEB01000000, and consists of
            sequences AHEB01000001-AHEB01000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R39099
            Assembly Name         :: Baci_cere_HuB1-1_V1
            Genome Coverage       :: 171.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000293725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:58:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,834
            CDSs (total)                      :: 5,736
            Genes (coding)                    :: 5,567
            CDSs (with protein)               :: 5,567
            Genes (RNA)                       :: 98
            rRNAs                             :: 8, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 4, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 78
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 169
            CDSs (without protein)            :: 169
            Pseudo Genes (ambiguous residues) :: 0 of 169
            Pseudo Genes (frameshifted)       :: 67 of 169
            Pseudo Genes (incomplete)         :: 116 of 169
            Pseudo Genes (internal stop)      :: 39 of 169
            Pseudo Genes (multiple problems)  :: 41 of 169
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5694837
                     /organism="Bacillus cereus HuB1-1"
                     /mol_type="genomic DNA"
                     /strain="HuB1-1"
                     /db_xref="taxon:1053207"
WGS         AHEB01000001-AHEB01000048
WGS_SCAFLD  NZ_JH804683-NZ_JH804689
//
LOCUS       NZ_SNQL01000000      2276794 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aliarcobacter cryaerophilus strain G18RTA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SNQL00000000
VERSION     NZ_SNQL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11129963
            Assembly: GCF_008086605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aliarcobacter cryaerophilus (Arcobacter cryaerophilus)
  ORGANISM  Aliarcobacter cryaerophilus
            Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Arcobacteraceae; Aliarcobacter.
REFERENCE   1  (bases 1 to 2276794)
  AUTHORS   On,S.L.W., Althaus,D., Miller,W.G., Lizamore,D., Wong,S.G.L.,
            Mathai,A.J., Chelikani,V. and Carter,G.P.
  TITLE     Arcobacter cryaerophilus Isolated From New Zealand Mussels Harbor a
            Putative Virulence Plasmid
  JOURNAL   Front Microbiol 10, 1802 (2019)
   PUBMED   31428079
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276794)
  AUTHORS   On,S.L.W., Althus,D., Miller,W.G., Lizamore,D., Wong,S.G.L.,
            Mathai,A.J., Chelikani,V. and Carter,G.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2019) Wine, Food, and Molecular Biosciences,
            Lincoln University, Springs Road, Lincoln 7647, New Zealand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNQL00000000.1.
            The Aliarcobacter cryaerophilus whole genome shotgun (WGS) project
            has the project accession NZ_SNQL00000000.  This version of the
            project (01) has the accession number NZ_SNQL01000000, and consists
            of sequences SNQL01000001-SNQL01000256.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2017
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008086605.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:44:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,384
            CDSs (total)                      :: 2,340
            Genes (coding)                    :: 2,294
            CDSs (with protein)               :: 2,294
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 1 of 46
            Pseudo Genes (incomplete)         :: 41 of 46
            Pseudo Genes (internal stop)      :: 11 of 46
            Pseudo Genes (multiple problems)  :: 7 of 46
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276794
                     /organism="Aliarcobacter cryaerophilus"
                     /mol_type="genomic DNA"
                     /strain="G18RTA"
                     /isolation_source="Shellfish"
                     /host="Perna canaliculus"
                     /db_xref="taxon:28198"
                     /geo_loc_name="New Zealand: Canterbury"
                     /lat_lon="41.6 S 174.51 E"
                     /collection_date="2016-03-07"
WGS         SNQL01000001-SNQL01000256
WGS_SCAFLD  NZ_SNQL01000001-NZ_SNQL01000256
//
LOCUS       NZ_NKWN01000000      4641811 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas veronii strain CECT 4902, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NKWN00000000
VERSION     NZ_NKWN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07312765
            Assembly: GCF_006246325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii (Aeromonas ichthiosmia)
  ORGANISM  Aeromonas veronii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4641811)
  AUTHORS   Rangel,L.T., Marden,J., Colston,S., Setubal,J.C., Graf,J. and
            Gogarten,J.P.
  TITLE     Identification and characterization of putative Aeromonas spp. T3SS
            effectors
  JOURNAL   PLoS One 14 (6), e0214035 (2019)
   PUBMED   31163020
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4641811)
  AUTHORS   Colston,S.M. and Graf,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2017) Molecular and Cell Biology, University of
            Connecticut, 91 N. Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NKWN00000000.1.
            The Aeromonas veronii whole genome shotgun (WGS) project has the
            project accession NZ_NKWN00000000.  This version of the project
            (01) has the accession number NZ_NKWN01000000, and consists of
            sequences NKWN01000001-NKWN01000029.
            Bacteria available from Graf lab, University of Connecticut.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. CLC Genomics workbench 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 101x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006246325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:41:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,280
            CDSs (total)                      :: 4,177
            Genes (coding)                    :: 4,132
            CDSs (with protein)               :: 4,132
            Genes (RNA)                       :: 103
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 22 of 46
            Pseudo Genes (incomplete)         :: 33 of 46
            Pseudo Genes (internal stop)      :: 8 of 46
            Pseudo Genes (multiple problems)  :: 15 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4641811
                     /organism="Aeromonas veronii"
                     /mol_type="genomic DNA"
                     /strain="CECT 4902"
                     /db_xref="taxon:654"
                     /geo_loc_name="Germany"
WGS         NKWN01000001-NKWN01000029
WGS_SCAFLD  NZ_NKWN01000001-NZ_NKWN01000029
//
LOCUS       NZ_NKWI01000000      4803031 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain CIP 107036, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NKWI00000000
VERSION     NZ_NKWI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07312770
            Assembly: GCF_006243325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4803031)
  AUTHORS   Rangel,L.T., Marden,J., Colston,S., Setubal,J.C., Graf,J. and
            Gogarten,J.P.
  TITLE     Identification and characterization of putative Aeromonas spp. T3SS
            effectors
  JOURNAL   PLoS One 14 (6), e0214035 (2019)
   PUBMED   31163020
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4803031)
  AUTHORS   Colston,S.M. and Graf,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2017) Molecular and Cell Biology, University of
            Connecticut, 91 N. Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NKWI00000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_NKWI00000000.  This version of the project
            (01) has the accession number NZ_NKWI01000000, and consists of
            sequences NKWI01000001-NKWI01000225.
            Bacteria available from Graf lab, University of Connecticut.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. CLC Genomics workbench 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 92x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006243325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:59:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,541
            CDSs (total)                      :: 4,441
            Genes (coding)                    :: 4,290
            CDSs (with protein)               :: 4,290
            Genes (RNA)                       :: 100
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 36 of 151
            Pseudo Genes (incomplete)         :: 116 of 151
            Pseudo Genes (internal stop)      :: 18 of 151
            Pseudo Genes (multiple problems)  :: 16 of 151
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4803031
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="CIP 107036"
                     /isolation_source="river water"
                     /db_xref="taxon:645"
WGS         NKWI01000001-NKWI01000225
WGS_SCAFLD  NZ_NKWI01000001-NZ_NKWI01000225
//
LOCUS       NZ_AAEN01000000      5488676 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus anthracis str. CNEVA-9066, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AAEN00000000
VERSION     NZ_AAEN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02435891
            Assembly: GCF_000167235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus anthracis str. CNEVA-9066
  ORGANISM  Bacillus anthracis str. CNEVA-9066
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5488676)
  AUTHORS   Ravel,J., Rasko,D.A., Shumway,M.F., Jiang,L., Cer,R.Z.,
            Federova,N.B., Wilson,M., Stanley,S., Decker,S., Read,T.D.,
            Salzberg,S. and Fraser,C.M.
  TITLE     Bacillus anthracis comparative genomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5488676)
  AUTHORS   Ravel,J., Rasko,D.A., Shumway,M.F., Jiang,L., Cer,R.Z.,
            Federova,N.B., Wilson,M., Stanley,S., Decker,S., Read,T.D.,
            Salzberg,S. and Fraser,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2004) Microbial Genomics, The Institute for
            Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AAEN00000000.1.
            The Bacillus anthracis str. CNEVA-9066 whole genome shotgun (WGS)
            project has the project accession NZ_AAEN00000000.  This version of
            the project (01) has the accession number NZ_AAEN01000000, and
            consists of sequences AAEN01000001-AAEN01000030.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000167235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:42:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,777
            CDSs (total)                      :: 5,640
            Genes (coding)                    :: 5,249
            CDSs (with protein)               :: 5,249
            Genes (RNA)                       :: 137
            rRNAs                             :: 10, 11, 14 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 7, 6 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 8 (16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 391
            CDSs (without protein)            :: 391
            Pseudo Genes (ambiguous residues) :: 0 of 391
            Pseudo Genes (frameshifted)       :: 247 of 391
            Pseudo Genes (incomplete)         :: 108 of 391
            Pseudo Genes (internal stop)      :: 93 of 391
            Pseudo Genes (multiple problems)  :: 46 of 391
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5488676
                     /organism="Bacillus anthracis str. CNEVA-9066"
                     /mol_type="genomic DNA"
                     /strain="CNEVA-9066"
                     /db_xref="taxon:280354"
WGS         AAEN01000001-AAEN01000030
WGS_SCAFLD  NZ_AAEN01000001-NZ_AAEN01000030
//
LOCUS       NZ_NKWV01000000      4966286 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas hydrophila strain BAQ071013-136, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NKWV00000000
VERSION     NZ_NKWV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07312756
            Assembly: GCF_006246385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas hydrophila
  ORGANISM  Aeromonas hydrophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4966286)
  AUTHORS   Rangel,L.T., Marden,J., Colston,S., Setubal,J.C., Graf,J. and
            Gogarten,J.P.
  TITLE     Identification and characterization of putative Aeromonas spp. T3SS
            effectors
  JOURNAL   PLoS One 14 (6), e0214035 (2019)
   PUBMED   31163020
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4966286)
  AUTHORS   Colston,S.M. and Graf,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2017) Molecular and Cell Biology, University of
            Connecticut, 91 N. Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NKWV00000000.1.
            The Aeromonas hydrophila whole genome shotgun (WGS) project has the
            project accession NZ_NKWV00000000.  This version of the project
            (01) has the accession number NZ_NKWV01000000, and consists of
            sequences NKWV01000001-NKWV01000084.
            Bacteria available from Graf lab, University of Connecticut.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. CLC Genomics workbench 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 129x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006246385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:57:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,729
            CDSs (total)                      :: 4,617
            Genes (coding)                    :: 4,548
            CDSs (with protein)               :: 4,548
            Genes (RNA)                       :: 112
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 103
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 23 of 69
            Pseudo Genes (incomplete)         :: 50 of 69
            Pseudo Genes (internal stop)      :: 15 of 69
            Pseudo Genes (multiple problems)  :: 16 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4966286
                     /organism="Aeromonas hydrophila"
                     /mol_type="genomic DNA"
                     /strain="BAQ071013-136"
                     /isolation_source="spleen"
                     /host="perch"
                     /db_xref="taxon:644"
WGS         NKWV01000001-NKWV01000084
WGS_SCAFLD  NZ_NKWV01000001-NZ_NKWV01000084
//
LOCUS       NZ_AHDK01000000      5665192 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus BAG5X12-1, whole genome shotgun sequencing project.
ACCESSION   NZ_AHDK00000000
VERSION     NZ_AHDK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02596822
            Assembly: GCF_000399325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus BAG5X12-1
  ORGANISM  Bacillus cereus BAG5X12-1
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5665192)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Walker,B.,
            Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B.,
            Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M.,
            Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S.,
            Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C.,
            Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S.,
            Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Bacillus cereus BAG5X12-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5665192)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Walker,B.,
            Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B.,
            Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A.M.,
            Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A., Gujja,S.,
            Hansen,M., Howarth,C., Imamovic,A., Larimer,J., McCowan,C.,
            Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S.,
            Shea,T., Sisk,P., Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHDK00000000.1.
            The Bacillus cereus BAG5X12-1 whole genome shotgun (WGS) project
            has the project accession NZ_AHDK00000000.  This version of the
            project (01) has the accession number NZ_AHDK01000000, and consists
            of sequences AHDK01000001-AHDK01000049.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R38742
            Assembly Name         :: Baci_cere_BAG5X12-1_G13199_V1
            Genome Coverage       :: 161.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000399325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:41:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,814
            CDSs (total)                      :: 5,710
            Genes (coding)                    :: 5,505
            CDSs (with protein)               :: 5,505
            Genes (RNA)                       :: 104
            rRNAs                             :: 6, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 71 of 205
            Pseudo Genes (incomplete)         :: 153 of 205
            Pseudo Genes (internal stop)      :: 40 of 205
            Pseudo Genes (multiple problems)  :: 46 of 205
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5665192
                     /organism="Bacillus cereus BAG5X12-1"
                     /mol_type="genomic DNA"
                     /strain="BAG5X12-1"
                     /db_xref="taxon:1053190"
WGS         AHDK01000001-AHDK01000049
WGS_SCAFLD  NZ_KB976553-NZ_KB976559
//
LOCUS       NZ_NKWC01000000      4972613 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas hydrophila strain PAQ091014-12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NKWC00000000
VERSION     NZ_NKWC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07312776
            Assembly: GCF_006243265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas hydrophila
  ORGANISM  Aeromonas hydrophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4972613)
  AUTHORS   Rangel,L.T., Marden,J., Colston,S., Setubal,J.C., Graf,J. and
            Gogarten,J.P.
  TITLE     Identification and characterization of putative Aeromonas spp. T3SS
            effectors
  JOURNAL   PLoS One 14 (6), e0214035 (2019)
   PUBMED   31163020
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4972613)
  AUTHORS   Colston,S.M. and Graf,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2017) Molecular and Cell Biology, University of
            Connecticut, 91 N. Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NKWC00000000.1.
            The Aeromonas hydrophila whole genome shotgun (WGS) project has the
            project accession NZ_NKWC00000000.  This version of the project
            (01) has the accession number NZ_NKWC01000000, and consists of
            sequences NKWC01000001-NKWC01000095.
            Bacteria available from Graf lab, University of Connecticut.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. CLC Genomics workbench 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 95x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006243265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:52:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,719
            CDSs (total)                      :: 4,617
            Genes (coding)                    :: 4,557
            CDSs (with protein)               :: 4,557
            Genes (RNA)                       :: 102
            rRNAs                             :: 5, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 89
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 19 of 60
            Pseudo Genes (incomplete)         :: 48 of 60
            Pseudo Genes (internal stop)      :: 3 of 60
            Pseudo Genes (multiple problems)  :: 7 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4972613
                     /organism="Aeromonas hydrophila"
                     /mol_type="genomic DNA"
                     /strain="PAQ091014-12"
                     /isolation_source="kidney"
                     /host="Oncorhynchus mykiss"
                     /db_xref="taxon:644"
WGS         NKWC01000001-NKWC01000095
WGS_SCAFLD  NZ_NKWC01000001-NZ_NKWC01000095
//
LOCUS       NZ_NIJP01000000      4447489 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain LMG 17655, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NIJP00000000
VERSION     NZ_NIJP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05583222
            Assembly: GCF_007994175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4447489)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Genome sequence analysis of >100 Bacillus licheniformis strains
            suggests intrinsic resistance to this species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4447489)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Health, NIZO Food Research, Kernhemseweg 2,
            Ede 6710 BA, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NIJP00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_NIJP00000000.  This version of the project
            (01) has the accession number NZ_NIJP01000000, and consists of
            sequences NIJP01000001-NIJP01000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 94x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007994175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:56:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,773
            CDSs (total)                      :: 4,698
            Genes (coding)                    :: 4,584
            CDSs (with protein)               :: 4,584
            Genes (RNA)                       :: 75
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 69
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 59 of 114
            Pseudo Genes (incomplete)         :: 61 of 114
            Pseudo Genes (internal stop)      :: 10 of 114
            Pseudo Genes (multiple problems)  :: 14 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4447489
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="LMG 17655"
                     /db_xref="taxon:1402"
WGS         NIJP01000001-NIJP01000063
WGS_SCAFLD  NZ_NIJP01000001-NZ_NIJP01000063
//
LOCUS       NZ_NKXB01000000      4929076 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas hydrophila strain ARS-131-14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NKXB00000000
VERSION     NZ_NKXB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07312749
            Assembly: GCF_006246455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas hydrophila
  ORGANISM  Aeromonas hydrophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4929076)
  AUTHORS   Rangel,L.T., Marden,J., Colston,S., Setubal,J.C., Graf,J. and
            Gogarten,J.P.
  TITLE     Identification and characterization of putative Aeromonas spp. T3SS
            effectors
  JOURNAL   PLoS One 14 (6), e0214035 (2019)
   PUBMED   31163020
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4929076)
  AUTHORS   Colston,S.M. and Graf,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUL-2017) Molecular and Cell Biology, University of
            Connecticut, 91 N. Eagleville Rd, Storrs, CT 06269, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NKXB00000000.1.
            The Aeromonas hydrophila whole genome shotgun (WGS) project has the
            project accession NZ_NKXB00000000.  This version of the project
            (01) has the accession number NZ_NKXB01000000, and consists of
            sequences NKXB01000001-NKXB01000070.
            Bacteria available from Graf lab, University of Connecticut.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. CLC Genomics workbench 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 78x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006246455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:57:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,612
            CDSs (total)                      :: 4,516
            Genes (coding)                    :: 4,447
            CDSs (with protein)               :: 4,447
            Genes (RNA)                       :: 96
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 86
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 26 of 69
            Pseudo Genes (incomplete)         :: 49 of 69
            Pseudo Genes (internal stop)      :: 11 of 69
            Pseudo Genes (multiple problems)  :: 16 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4929076
                     /organism="Aeromonas hydrophila"
                     /mol_type="genomic DNA"
                     /strain="ARS-131-14"
                     /host="fish"
                     /db_xref="taxon:644"
WGS         NKXB01000001-NKXB01000070
WGS_SCAFLD  NZ_NKXB01000001-NZ_NKXB01000070
//
LOCUS       NZ_JABJZR010000000   2066676 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain 654G, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABJZR000000000
VERSION     NZ_JABJZR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14969754
            Assembly: GCF_021308855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2066676)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2066676)
  AUTHORS   Nedergaard,S. and Noerskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABJZR000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JABJZR000000000.  This
            version of the project (01) has the accession number
            NZ_JABJZR010000000, and consists of sequences
            JABJZR010000001-JABJZR010000024.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler: v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 97x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021308855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:36:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,035
            CDSs (total)                      :: 1,982
            Genes (coding)                    :: 1,863
            CDSs (with protein)               :: 1,863
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 60 of 119
            Pseudo Genes (incomplete)         :: 58 of 119
            Pseudo Genes (internal stop)      :: 24 of 119
            Pseudo Genes (multiple problems)  :: 21 of 119
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066676
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="654G"
                     /isolation_source="subgingival plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:714"
                     /geo_loc_name="Ghana"
                     /collection_date="2009"
                     /collected_by="Umeaa University, Sweden, Rolf Claesson"
WGS         JABJZR010000001-JABJZR010000024
WGS_SCAFLD  NZ_JABJZR010000001-NZ_JABJZR010000024
//
LOCUS       NZ_SDKH01000000      3952074 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus amyloliquefaciens strain Fad 99, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SDKH00000000
VERSION     NZ_SDKH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10779590
            Assembly: GCF_007844995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus amyloliquefaciens
  ORGANISM  Bacillus amyloliquefaciens
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus amyloliquefaciens group.
REFERENCE   1  (bases 1 to 3952074)
  AUTHORS   Li,Z., Schottroff,F., Simpson,D.J. and Ganzle,M.G.
  TITLE     The Copy Number of the spoVA2mob Operon Determines Pressure
            Resistance of Bacillus Endospores
  JOURNAL   Appl Environ Microbiol 85 (19), e01596-19 (2019)
   PUBMED   31375487
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3952074)
  AUTHORS   Simpson,D.J., Wang,Z. and Gaenzle,M.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2019) Agricultural, Food & Nutritional Science,
            University of Alberta, 410 Agriculture/Forestry Centre, Edmonton,
            Alberta T6G 2P5, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SDKH00000000.1.
            The Bacillus amyloliquefaciens whole genome shotgun (WGS) project
            has the project accession NZ_SDKH00000000.  This version of the
            project (01) has the accession number NZ_SDKH01000000, and consists
            of sequences SDKH01000001-SDKH01000003.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007844995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:52:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,161
            CDSs (total)                      :: 4,071
            Genes (coding)                    :: 3,904
            CDSs (with protein)               :: 3,904
            Genes (RNA)                       :: 90
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 100 of 167
            Pseudo Genes (incomplete)         :: 76 of 167
            Pseudo Genes (internal stop)      :: 18 of 167
            Pseudo Genes (multiple problems)  :: 26 of 167
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952074
                     /organism="Bacillus amyloliquefaciens"
                     /mol_type="genomic DNA"
                     /strain="Fad 99"
                     /isolation_source="Ropy Bread"
                     /db_xref="taxon:1390"
                     /geo_loc_name="Germany"
                     /collection_date="1990"
WGS         SDKH01000001-SDKH01000003
WGS_SCAFLD  NZ_SDKH01000001-NZ_SDKH01000003
//
LOCUS       NZ_JABJZY010000000   2067699 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain 488G, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABJZY000000000
VERSION     NZ_JABJZY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14969747
            Assembly: GCF_021310125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2067699)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2067699)
  AUTHORS   Nedergaard,S. and Noerskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABJZY000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JABJZY000000000.  This
            version of the project (01) has the accession number
            NZ_JABJZY010000000, and consists of sequences
            JABJZY010000001-JABJZY010000022.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler: v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021310125.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:38:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,036
            CDSs (total)                      :: 1,982
            Genes (coding)                    :: 1,867
            CDSs (with protein)               :: 1,867
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 58 of 115
            Pseudo Genes (incomplete)         :: 54 of 115
            Pseudo Genes (internal stop)      :: 26 of 115
            Pseudo Genes (multiple problems)  :: 21 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067699
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="488G"
                     /isolation_source="subgingival plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:714"
                     /geo_loc_name="Ghana"
                     /collection_date="2009"
                     /collected_by="Umeaa University, Sweden, Rolf Claesson"
WGS         JABJZY010000001-JABJZY010000022
WGS_SCAFLD  NZ_JABJZY010000001-NZ_JABJZY010000022
//
LOCUS       NZ_JABJYR010000000   2028232 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain PH541, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABJYR000000000
VERSION     NZ_JABJYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14969780
            Assembly: GCF_021309635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2028232)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2028232)
  AUTHORS   Nedergaard,S. and Noerskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABJYR000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JABJYR000000000.  This
            version of the project (01) has the accession number
            NZ_JABJYR010000000, and consists of sequences
            JABJYR010000001-JABJYR010000024.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler: v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021309635.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:35:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,991
            CDSs (total)                      :: 1,938
            Genes (coding)                    :: 1,839
            CDSs (with protein)               :: 1,839
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 48 of 99
            Pseudo Genes (incomplete)         :: 51 of 99
            Pseudo Genes (internal stop)      :: 19 of 99
            Pseudo Genes (multiple problems)  :: 16 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028232
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="PH541"
                     /host="Homo sapiens"
                     /db_xref="taxon:714"
                     /geo_loc_name="Denmark"
                     /collection_date="1959"
                     /collected_by="Statens Serum Institut, Denmark, Per Holm"
WGS         JABJYR010000001-JABJYR010000024
WGS_SCAFLD  NZ_JABJYR010000001-NZ_JABJYR010000024
//
LOCUS       NZ_NIMY01000000      4186140 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain LMG 17659, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NIMY00000000
VERSION     NZ_NIMY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05583232
            Assembly: GCF_007832465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4186140)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Genome sequence analysis of >100 Bacillus licheniformis strains
            suggests intrinsic resistance to this species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4186140)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Health, NIZO Food Research, Kernhemseweg 2,
            Ede 6710 BA, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NIMY00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_NIMY00000000.  This version of the project
            (01) has the accession number NZ_NIMY01000000, and consists of
            sequences NIMY01000001-NIMY01000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007832465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:52:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,369
            CDSs (total)                      :: 4,294
            Genes (coding)                    :: 4,165
            CDSs (with protein)               :: 4,165
            Genes (RNA)                       :: 75
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 67
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 72 of 129
            Pseudo Genes (incomplete)         :: 62 of 129
            Pseudo Genes (internal stop)      :: 12 of 129
            Pseudo Genes (multiple problems)  :: 16 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4186140
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="LMG 17659"
                     /db_xref="taxon:1402"
WGS         NIMY01000001-NIMY01000034
WGS_SCAFLD  NZ_NIMY01000001-NZ_NIMY01000034
//
LOCUS       NZ_SDKG01000000      3952037 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus amyloliquefaciens strain Fad 82, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SDKG00000000
VERSION     NZ_SDKG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10779589
            Assembly: GCF_007845085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus amyloliquefaciens
  ORGANISM  Bacillus amyloliquefaciens
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus amyloliquefaciens group.
REFERENCE   1  (bases 1 to 3952037)
  AUTHORS   Li,Z., Schottroff,F., Simpson,D.J. and Ganzle,M.G.
  TITLE     The Copy Number of the spoVA2mob Operon Determines Pressure
            Resistance of Bacillus Endospores
  JOURNAL   Appl Environ Microbiol 85 (19), e01596-19 (2019)
   PUBMED   31375487
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3952037)
  AUTHORS   Simpson,D.J., Wang,Z. and Gaenzle,M.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2019) Agricultural, Food & Nutritional Science,
            University of Alberta, 410 Agriculture/Forestry Centre, Edmonton,
            Alberta T6G 2P5, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SDKG00000000.1.
            The Bacillus amyloliquefaciens whole genome shotgun (WGS) project
            has the project accession NZ_SDKG00000000.  This version of the
            project (01) has the accession number NZ_SDKG01000000, and consists
            of sequences SDKG01000001-SDKG01000002.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007845085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:54:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,143
            CDSs (total)                      :: 4,051
            Genes (coding)                    :: 3,883
            CDSs (with protein)               :: 3,883
            Genes (RNA)                       :: 92
            rRNAs                             :: 5, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 168
            CDSs (without protein)            :: 168
            Pseudo Genes (ambiguous residues) :: 0 of 168
            Pseudo Genes (frameshifted)       :: 99 of 168
            Pseudo Genes (incomplete)         :: 77 of 168
            Pseudo Genes (internal stop)      :: 19 of 168
            Pseudo Genes (multiple problems)  :: 26 of 168
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3952037
                     /organism="Bacillus amyloliquefaciens"
                     /mol_type="genomic DNA"
                     /strain="Fad 82"
                     /isolation_source="Ropy Bread"
                     /db_xref="taxon:1390"
                     /geo_loc_name="Germany"
                     /collection_date="1990"
WGS         SDKG01000001-SDKG01000002
WGS_SCAFLD  NZ_SDKG01000001-NZ_SDKG01000002
//
LOCUS       NZ_WBPA01000000      5723520 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus strain CH95b_3T, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WBPA00000000
VERSION     NZ_WBPA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12879132
            Assembly: GCF_008923825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5723520)
  AUTHORS   Olmedo-Alvarez,G., Saldana,S. and Barcelo,D.
  TITLE     Bacillus from the desert of Cuatro Cinegas, Coahuila
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5723520)
  AUTHORS   Olmedo-Alvarez,G., Saldana,S. and Barcelo,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) Ingenieria Genetica, Cinvestav, Libramiento
            Norte Carretera Irapuato Leon Kilometro 9.6, Carr Panamericana
            Irapuato Leon, Irapuato 36824, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WBPA00000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_WBPA00000000.  This version of the project
            (01) has the accession number NZ_WBPA01000000, and consists of
            sequences WBPA01000001-WBPA01000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2013
            Assembly Method        :: A5-miseq v. 2013
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008923825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:12:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,817
            CDSs (total)                      :: 5,692
            Genes (coding)                    :: 5,526
            CDSs (with protein)               :: 5,526
            Genes (RNA)                       :: 125
            rRNAs                             :: 14, 7, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 12 (5S)
            partial rRNAs                     :: 2, 7, 4 (5S, 16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 83 of 166
            Pseudo Genes (incomplete)         :: 99 of 166
            Pseudo Genes (internal stop)      :: 42 of 166
            Pseudo Genes (multiple problems)  :: 45 of 166
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5723520
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="CH95b_3T"
                     /isolation_source="sediment"
                     /db_xref="taxon:1396"
                     /geo_loc_name="Mexico: desert of Cuatro Cienegas,
                     Coahuila"
                     /collection_date="2007"
WGS         WBPA01000001-WBPA01000024
WGS_SCAFLD  NZ_WBPA01000001-NZ_WBPA01000024
//
LOCUS       NZ_JAAKGG010000000   4884053 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas dhakensis strain Aer_On15M, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAKGG000000000
VERSION     NZ_JAAKGG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14124457
            Assembly: GCF_017163915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4884053)
  AUTHORS   Kato,R.B., Miranda,F.M., Seyffert,N., Castro,T.P., Gomide,A.P.,
            Souza,R.S., Gouveia,G.V., Gouveia,J.S., Azevedo,V.C., Costa,M. and
            Ramos,R.J.
  TITLE     Comparative Genome Analysis of Aeromonas from aquatic organisms and
            environment in Northestern Brazil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4884053)
  AUTHORS   Kato,R.B., Miranda,F.M., Seyffert,N., Castro,T.P., Gomide,A.P.,
            Souza,R.S., Gouveia,G.V., Gouveia,J.S., Azevedo,V.C., Costa,M. and
            Ramos,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2020) Department of Genetics, Ecology, and
            Evolution, UFMG, Av Antonio Carlos 6627, Pampulha, Belo Horizonte,
            Minhas Gerais 31270-901, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAKGG000000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_JAAKGG000000000.  This version of the project
            (01) has the accession number NZ_JAAKGG010000000, and consists of
            sequences JAAKGG010000001-JAAKGG010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2019
            Assembly Method        :: SPAdes v. 3.13.0; Edena v. 3.131028
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 230.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017163915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:42:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,545
            CDSs (total)                      :: 4,420
            Genes (coding)                    :: 4,376
            CDSs (with protein)               :: 4,376
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 6, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 7 (16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 18 of 44
            Pseudo Genes (incomplete)         :: 30 of 44
            Pseudo Genes (internal stop)      :: 8 of 44
            Pseudo Genes (multiple problems)  :: 11 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4884053
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /strain="Aer_On15M"
                     /isolation_source="kidney"
                     /host="Oreochromis niloticus"
                     /db_xref="taxon:196024"
                     /geo_loc_name="Brazil: Sobradinho"
                     /lat_lon="9.471846 S 40.799612 W"
                     /collection_date="2009-05"
WGS         JAAKGG010000001-JAAKGG010000018
WGS_SCAFLD  NZ_JAAKGG010000001-NZ_JAAKGG010000018
//
LOCUS       NZ_JABJYS010000000   2040431 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain HG1216, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABJYS000000000
VERSION     NZ_JABJYS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14969779
            Assembly: GCF_021309645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2040431)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2040431)
  AUTHORS   Nedergaard,S. and Noerskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABJYS000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JABJYS000000000.  This
            version of the project (01) has the accession number
            NZ_JABJYS010000000, and consists of sequences
            JABJYS010000001-JABJYS010000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler: v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021309645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:42:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,013
            CDSs (total)                      :: 1,958
            Genes (coding)                    :: 1,861
            CDSs (with protein)               :: 1,861
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 43 of 97
            Pseudo Genes (incomplete)         :: 50 of 97
            Pseudo Genes (internal stop)      :: 19 of 97
            Pseudo Genes (multiple problems)  :: 14 of 97
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040431
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="HG1216"
                     /host="Homo sapiens"
                     /db_xref="taxon:714"
                     /geo_loc_name="Netherlands"
                     /collection_date="1990"
                     /collected_by="ACTA, The Netherlands, Arie Jan van
                     Winkelhoff"
WGS         JABJYS010000001-JABJYS010000021
WGS_SCAFLD  NZ_JABJYS010000001-NZ_JABJYS010000021
//
LOCUS       NZ_JABJZQ010000000   2108730 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain 666G, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABJZQ000000000
VERSION     NZ_JABJZQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14969755
            Assembly: GCF_021309995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2108730)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2108730)
  AUTHORS   Nedergaard,S. and Noerskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABJZQ000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JABJZQ000000000.  This
            version of the project (01) has the accession number
            NZ_JABJZQ010000000, and consists of sequences
            JABJZQ010000001-JABJZQ010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler: v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021309995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:39:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,101
            CDSs (total)                      :: 2,046
            Genes (coding)                    :: 1,931
            CDSs (with protein)               :: 1,931
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 57 of 116
            Pseudo Genes (incomplete)         :: 57 of 116
            Pseudo Genes (internal stop)      :: 25 of 116
            Pseudo Genes (multiple problems)  :: 22 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108730
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="666G"
                     /isolation_source="subgingival plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:714"
                     /geo_loc_name="Ghana"
                     /collection_date="2009"
                     /collected_by="Umeaa University, Sweden, Rolf Claesson"
WGS         JABJZQ010000001-JABJZQ010000025
WGS_SCAFLD  NZ_JABJZQ010000001-NZ_JABJZQ010000025
//
LOCUS       NZ_QANP01000000      5455728 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus anthracis strain COVASU, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QANP00000000
VERSION     NZ_QANP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07644999
            Assembly: GCF_003045745.2
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus anthracis (anthrax bacterium)
  ORGANISM  Bacillus anthracis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5455728)
  AUTHORS   Bhosle,A.V., Karpe,A.G. and Kulkarni,M.B.
  TITLE     Next generation whole genome sequencing of Bacillus anthracis BA
            COVASU pathogenic strain isolated from sheep from an outbreak in
            India
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5455728)
  AUTHORS   Bhosle,A.V., Karpe,A.G. and Kulkarni,M.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2018) Veterinary Microbiology, College of
            Veterinary & Animal Sciences, MAFSU, Udgir, Hawagiswami Math Chowk,
            Nideban Galli, Udgir, Maharashtra 413517, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QANP00000000.1.
            The Bacillus anthracis whole genome shotgun (WGS) project has the
            project accession NZ_QANP00000000.  This version of the project
            (01) has the accession number NZ_QANP01000000, and consists of
            sequences QANP01000001-QANP01000028.
            Bacteria and source DNA available from Ashok V. Bhosale, Avinash G.
            Karpe and Mahesh B. Kulkarni, Department of Veterinary
            Microbiology, College of Veterinary & Animal Sciences, Udgir, Dist.
            Latur, Maharashtra, India.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-JAN-2018
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 450.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003045745.2-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:34:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,787
            CDSs (total)                      :: 5,678
            Genes (coding)                    :: 5,273
            CDSs (with protein)               :: 5,273
            Genes (RNA)                       :: 109
            rRNAs                             :: 11, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 4, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 405
            CDSs (without protein)            :: 405
            Pseudo Genes (ambiguous residues) :: 0 of 405
            Pseudo Genes (frameshifted)       :: 262 of 405
            Pseudo Genes (incomplete)         :: 110 of 405
            Pseudo Genes (internal stop)      :: 94 of 405
            Pseudo Genes (multiple problems)  :: 50 of 405
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5455728
                     /organism="Bacillus anthracis"
                     /mol_type="genomic DNA"
                     /strain="COVASU"
                     /isolation_source="blood from dead animal from fresh cut"
                     /host="Ovis aries"
                     /db_xref="taxon:1392"
                     /geo_loc_name="India: Maharashtra"
                     /collection_date="2017-03"
WGS         QANP01000001-QANP01000028
WGS_SCAFLD  NZ_QANP01000001-NZ_QANP01000028
//
LOCUS       NZ_JABKAK010000000   2213671 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain 153G, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABKAK000000000
VERSION     NZ_JABKAK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14969735
            Assembly: GCF_021310335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2213671)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2213671)
  AUTHORS   Nedergaard,S. and Noerskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABKAK000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JABKAK000000000.  This
            version of the project (01) has the accession number
            NZ_JABKAK010000000, and consists of sequences
            JABKAK010000001-JABKAK010000117.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler: v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021310335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:41:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,236
            CDSs (total)                      :: 2,181
            Genes (coding)                    :: 2,067
            CDSs (with protein)               :: 2,067
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 50 of 115
            Pseudo Genes (incomplete)         :: 63 of 115
            Pseudo Genes (internal stop)      :: 21 of 115
            Pseudo Genes (multiple problems)  :: 18 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213671
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="153G"
                     /isolation_source="subgingival plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:714"
                     /geo_loc_name="Ghana"
                     /collection_date="2009"
                     /collected_by="Umeaa University, Sweden, Rolf Claesson"
WGS         JABKAK010000001-JABKAK010000117
WGS_SCAFLD  NZ_JABKAK010000001-NZ_JABKAK010000117
//
LOCUS       NZ_JADBHM010000000   2069548 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain HK 443, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JADBHM000000000
VERSION     NZ_JADBHM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16365905
            Assembly: GCF_021310955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2069548)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2069548)
  AUTHORS   Nedergaard,S. and Norskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-OCT-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADBHM000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JADBHM000000000.  This
            version of the project (01) has the accession number
            NZ_JADBHM010000000, and consists of sequences
            JADBHM010000001-JADBHM010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021310955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:47:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,085
            CDSs (total)                      :: 2,030
            Genes (coding)                    :: 1,920
            CDSs (with protein)               :: 1,920
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 54 of 111
            Pseudo Genes (incomplete)         :: 57 of 111
            Pseudo Genes (internal stop)      :: 17 of 111
            Pseudo Genes (multiple problems)  :: 17 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069548
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="HK 443"
                     /db_xref="taxon:714"
                     /geo_loc_name="Denmark"
                     /collection_date="1949"
WGS         JADBHM010000001-JADBHM010000041
WGS_SCAFLD  NZ_JADBHM010000001-NZ_JADBHM010000041
//
LOCUS       NZ_JAPRAL010000000   2053382 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aliarcobacter cryaerophilus strain W98, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAPRAL000000000
VERSION     NZ_JAPRAL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31972997
            Assembly: GCF_049278035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aliarcobacter cryaerophilus (Arcobacter cryaerophilus)
  ORGANISM  Aliarcobacter cryaerophilus
            Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Arcobacteraceae; Aliarcobacter.
REFERENCE   1  (bases 1 to 2053382)
  AUTHORS   Carraro,L.
  TITLE     Arcobacter genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2053382)
  AUTHORS   Carraro,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2022) Comparative Biomedicine and Food Science,
            University of Padova, Viale dell'Universita, 16, Legnaro, Padova
            35020, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPRAL000000000.1.
            The Aliarcobacter cryaerophilus whole genome shotgun (WGS) project
            has the project accession NZ_JAPRAL000000000.  This version of the
            project (01) has the accession number NZ_JAPRAL010000000, and
            consists of sequences JAPRAL010000001-JAPRAL010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2022
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1460.4104350773505x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049278035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:10:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,147
            CDSs (total)                      :: 2,101
            Genes (coding)                    :: 2,090
            CDSs (with protein)               :: 2,090
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 2 (5S, 16S)
            partial rRNAs                     :: 3, 2 (5S, 16S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 11
            CDSs (without protein)            :: 11
            Pseudo Genes (ambiguous residues) :: 0 of 11
            Pseudo Genes (frameshifted)       :: 3 of 11
            Pseudo Genes (incomplete)         :: 8 of 11
            Pseudo Genes (internal stop)      :: 0 of 11
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053382
                     /organism="Aliarcobacter cryaerophilus"
                     /mol_type="genomic DNA"
                     /strain="W98"
                     /db_xref="taxon:28198"
WGS         JAPRAL010000001-JAPRAL010000008
WGS_SCAFLD  NZ_JAPRAL010000001-NZ_JAPRAL010000008
//
LOCUS       NZ_JALKVL010000000   4738132 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida subsp. salmonicida strain VI-88/09/03175,
            whole genome shotgun sequencing project.
ACCESSION   NZ_JALKVL000000000
VERSION     NZ_JALKVL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27544343
            Assembly: GCF_023108375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida subsp. salmonicida
  ORGANISM  Aeromonas salmonicida subsp. salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4738132)
  AUTHORS   Padra,J.T., Loibman,S.O., Thorell,K., Sundh,H., Sundell,K. and
            Linden,S.K.
  TITLE     Atlantic Salmon Mucins Inhibit LuxS-Dependent A. Salmonicida AI-2
            Quorum Sensing in an N-Acetylneuraminic Acid-Dependent Manner
  JOURNAL   Int J Mol Sci 23 (8), 4326 (2022)
   PUBMED   35457143
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4738132)
  AUTHORS   Thorell,K. and Linden,S.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2022) Medical Chemistry and Cell Biology,
            University of Gothenburg, Medicinaregatan 9A, Gothenburg 41390,
            Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKVL000000000.1.
            The Aeromonas salmonicida subsp. salmonicida whole genome shotgun
            (WGS) project has the project accession NZ_JALKVL000000000.  This
            version of the project (01) has the accession number
            NZ_JALKVL010000000, and consists of sequences
            JALKVL010000001-JALKVL010000123.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Prof. Sara Linden,
            Sahlgrenska Academy, University of Gothenburg, Sweden.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-FEB-2021
            Assembly Method        :: SPAdes v. Feb-2021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 52.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023108375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:30:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,549
            CDSs (total)                      :: 4,441
            Genes (coding)                    :: 4,225
            CDSs (with protein)               :: 4,225
            Genes (RNA)                       :: 108
            rRNAs                             :: 6, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 216
            CDSs (without protein)            :: 216
            Pseudo Genes (ambiguous residues) :: 0 of 216
            Pseudo Genes (frameshifted)       :: 125 of 216
            Pseudo Genes (incomplete)         :: 77 of 216
            Pseudo Genes (internal stop)      :: 33 of 216
            Pseudo Genes (multiple problems)  :: 18 of 216
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4738132
                     /organism="Aeromonas salmonicida subsp. salmonicida"
                     /mol_type="genomic DNA"
                     /strain="VI-88/09/03175"
                     /host="Atlantic salmon"
                     /sub_species="salmonicida"
                     /db_xref="taxon:29491"
                     /geo_loc_name="Norway"
                     /collection_date="1988"
                     /collected_by="Norwegian Veterinary Institute"
WGS         JALKVL010000001-JALKVL010000123
WGS_SCAFLD  NZ_JALKVL010000001-NZ_JALKVL010000123
//
LOCUS       NZ_JBMPXP010000000   5731740 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus strain 79, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPXP000000000
VERSION     NZ_JBMPXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275435
            Assembly: GCF_049367155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5731740)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5731740)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPXP000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPXP000000000.  This version of the project
            (01) has the accession number NZ_JBMPXP010000000, and consists of
            sequences JBMPXP010000001-JBMPXP010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 67.6566x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049367155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:28:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,938
            CDSs (total)                      :: 5,767
            Genes (coding)                    :: 5,562
            CDSs (with protein)               :: 5,562
            Genes (RNA)                       :: 171
            rRNAs                             :: 16, 15, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 15, 15, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 120
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 86 of 205
            Pseudo Genes (incomplete)         :: 129 of 205
            Pseudo Genes (internal stop)      :: 30 of 205
            Pseudo Genes (multiple problems)  :: 34 of 205
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5731740
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="79"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-04-06"
                     /collected_by="Kaiyue Zhang"
WGS         JBMPXP010000001-JBMPXP010000009
WGS_SCAFLD  NZ_JBMPXP010000001-NZ_JBMPXP010000009
//
LOCUS       NZ_JAOXCI010000000   4944129 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain SFG-51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOXCI000000000
VERSION     NZ_JAOXCI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31169419
            Assembly: GCF_026174405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4944129)
  AUTHORS   Kassem,I. and Hassan,J.
  TITLE     Antimicrobial resistance in local and imported seafood
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4944129)
  AUTHORS   Kassem,I. and Hassan,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2022) Center for Food Safety, University of
            Georgia, 1109 Experiment St, Griffin, GA 30223, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOXCI000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAOXCI000000000.  This version of the
            project (01) has the accession number NZ_JAOXCI010000000, and
            consists of sequences JAOXCI010000001-JAOXCI010000251.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026174405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,794
            CDSs (total)                      :: 4,656
            Genes (coding)                    :: 4,535
            CDSs (with protein)               :: 4,535
            Genes (RNA)                       :: 138
            rRNAs                             :: 10, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 2, 5, 7 (5S, 16S, 23S)
            tRNAs                             :: 110
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 28 of 121
            Pseudo Genes (incomplete)         :: 96 of 121
            Pseudo Genes (internal stop)      :: 16 of 121
            Pseudo Genes (multiple problems)  :: 17 of 121
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944129
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="SFG-51"
                     /isolation_source="retail store"
                     /db_xref="taxon:645"
                     /geo_loc_name="USA: Georgia"
                     /collected_by="Jouman Hassan and Issmat Kassem"
WGS         JAOXCI010000001-JAOXCI010000251
WGS_SCAFLD  NZ_JAOXCI010000001-NZ_JAOXCI010000251
//
LOCUS       NZ_JBMPZF010000000   5824897 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus strain 35, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPZF000000000
VERSION     NZ_JBMPZF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275393
            Assembly: GCF_049368695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5824897)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5824897)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPZF000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPZF000000000.  This version of the project
            (01) has the accession number NZ_JBMPZF010000000, and consists of
            sequences JBMPZF010000001-JBMPZF010000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 64.7456x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049368695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:38:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,996
            CDSs (total)                      :: 5,855
            Genes (coding)                    :: 5,638
            CDSs (with protein)               :: 5,638
            Genes (RNA)                       :: 141
            rRNAs                             :: 13, 13, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 13, 13 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 217
            CDSs (without protein)            :: 217
            Pseudo Genes (ambiguous residues) :: 0 of 217
            Pseudo Genes (frameshifted)       :: 90 of 217
            Pseudo Genes (incomplete)         :: 140 of 217
            Pseudo Genes (internal stop)      :: 32 of 217
            Pseudo Genes (multiple problems)  :: 38 of 217
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5824897
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="35"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-03-09"
                     /collected_by="Wanzhen Guo"
WGS         JBMPZF010000001-JBMPZF010000014
WGS_SCAFLD  NZ_JBMPZF010000001-NZ_JBMPZF010000014
//
LOCUS       NZ_JAOXCC010000000   4949089 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain SFG-41, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOXCC000000000
VERSION     NZ_JAOXCC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31169414
            Assembly: GCF_026173865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4949089)
  AUTHORS   Kassem,I. and Hassan,J.
  TITLE     Antimicrobial resistance in local and imported seafood
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4949089)
  AUTHORS   Kassem,I. and Hassan,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2022) Center for Food Safety, University of
            Georgia, 1109 Experiment St, Griffin, GA 30223, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOXCC000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAOXCC000000000.  This version of the
            project (01) has the accession number NZ_JAOXCC010000000, and
            consists of sequences JAOXCC010000001-JAOXCC010000294.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 19x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026173865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:47:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,820
            CDSs (total)                      :: 4,683
            Genes (coding)                    :: 4,552
            CDSs (with protein)               :: 4,552
            Genes (RNA)                       :: 137
            rRNAs                             :: 10, 3, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 2, 3, 8 (5S, 16S, 23S)
            tRNAs                             :: 110
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 29 of 131
            Pseudo Genes (incomplete)         :: 105 of 131
            Pseudo Genes (internal stop)      :: 16 of 131
            Pseudo Genes (multiple problems)  :: 17 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4949089
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="SFG-41"
                     /isolation_source="retail store"
                     /db_xref="taxon:645"
                     /geo_loc_name="USA: Georgia"
                     /collected_by="Jouman Hassan and Issmat Kassem"
WGS         JAOXCC010000001-JAOXCC010000294
WGS_SCAFLD  NZ_JAOXCC010000001-NZ_JAOXCC010000294
//
LOCUS       NZ_JBMPZO010000000   5808853 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus strain 25, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPZO000000000
VERSION     NZ_JBMPZO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275383
            Assembly: GCF_049369215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5808853)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5808853)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPZO000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPZO000000000.  This version of the project
            (01) has the accession number NZ_JBMPZO010000000, and consists of
            sequences JBMPZO010000001-JBMPZO010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 79.84740000000001x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049369215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:39:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,962
            CDSs (total)                      :: 5,812
            Genes (coding)                    :: 5,610
            CDSs (with protein)               :: 5,610
            Genes (RNA)                       :: 150
            rRNAs                             :: 13, 13, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 13, 13 (5S, 16S, 23S)
            tRNAs                             :: 106
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 202
            CDSs (without protein)            :: 202
            Pseudo Genes (ambiguous residues) :: 0 of 202
            Pseudo Genes (frameshifted)       :: 81 of 202
            Pseudo Genes (incomplete)         :: 134 of 202
            Pseudo Genes (internal stop)      :: 32 of 202
            Pseudo Genes (multiple problems)  :: 38 of 202
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5808853
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="25"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-03-02"
                     /collected_by="Wanzhen Guo"
WGS         JBMPZO010000001-JBMPZO010000008
WGS_SCAFLD  NZ_JBMPZO010000001-NZ_JBMPZO010000008
//
LOCUS       NZ_JBMPZY010000000   5818822 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus strain 14, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPZY000000000
VERSION     NZ_JBMPZY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275372
            Assembly: GCF_049380255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5818822)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5818822)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPZY000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPZY000000000.  This version of the project
            (01) has the accession number NZ_JBMPZY010000000, and consists of
            sequences JBMPZY010000001-JBMPZY010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 116x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049380255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:37:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,983
            CDSs (total)                      :: 5,818
            Genes (coding)                    :: 5,619
            CDSs (with protein)               :: 5,619
            Genes (RNA)                       :: 165
            rRNAs                             :: 15, 15, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 15, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 115
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 199
            CDSs (without protein)            :: 199
            Pseudo Genes (ambiguous residues) :: 0 of 199
            Pseudo Genes (frameshifted)       :: 79 of 199
            Pseudo Genes (incomplete)         :: 131 of 199
            Pseudo Genes (internal stop)      :: 32 of 199
            Pseudo Genes (multiple problems)  :: 36 of 199
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5818822
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="14"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-01-29"
                     /collected_by="Ziyu Wan"
WGS         JBMPZY010000001-JBMPZY010000009
WGS_SCAFLD  NZ_JBMPZY010000001-NZ_JBMPZY010000009
//
LOCUS       NZ_JAOXCE010000000   4950405 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain SFG-42, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOXCE000000000
VERSION     NZ_JAOXCE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31169415
            Assembly: GCF_026183495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4950405)
  AUTHORS   Kassem,I. and Hassan,J.
  TITLE     Antimicrobial resistance in local and imported seafood
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4950405)
  AUTHORS   Kassem,I. and Hassan,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2022) Center for Food Safety, University of
            Georgia, 1109 Experiment St, Griffin, GA 30223, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOXCE000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAOXCE000000000.  This version of the
            project (01) has the accession number NZ_JAOXCE010000000, and
            consists of sequences JAOXCE010000001-JAOXCE010000285.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 27x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026183495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,812
            CDSs (total)                      :: 4,673
            Genes (coding)                    :: 4,546
            CDSs (with protein)               :: 4,546
            Genes (RNA)                       :: 139
            rRNAs                             :: 10, 5, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 2, 5, 8 (5S, 16S, 23S)
            tRNAs                             :: 110
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 26 of 127
            Pseudo Genes (incomplete)         :: 103 of 127
            Pseudo Genes (internal stop)      :: 16 of 127
            Pseudo Genes (multiple problems)  :: 16 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4950405
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="SFG-42"
                     /isolation_source="retail store"
                     /db_xref="taxon:645"
                     /geo_loc_name="USA: Georgia"
                     /collected_by="Jouman Hassan and Issmat Kassem"
WGS         JAOXCE010000001-JAOXCE010000285
WGS_SCAFLD  NZ_JAOXCE010000001-NZ_JAOXCE010000285
//
LOCUS       NZ_JBMPXS010000000   5702652 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus strain 76, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPXS000000000
VERSION     NZ_JBMPXS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275432
            Assembly: GCF_049367275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5702652)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5702652)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPXS000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPXS000000000.  This version of the project
            (01) has the accession number NZ_JBMPXS010000000, and consists of
            sequences JBMPXS010000001-JBMPXS010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 56.6244x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049367275.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:39:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,886
            CDSs (total)                      :: 5,724
            Genes (coding)                    :: 5,515
            CDSs (with protein)               :: 5,515
            Genes (RNA)                       :: 162
            rRNAs                             :: 15, 15, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 15, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 112
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 209
            CDSs (without protein)            :: 209
            Pseudo Genes (ambiguous residues) :: 0 of 209
            Pseudo Genes (frameshifted)       :: 89 of 209
            Pseudo Genes (incomplete)         :: 131 of 209
            Pseudo Genes (internal stop)      :: 28 of 209
            Pseudo Genes (multiple problems)  :: 33 of 209
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5702652
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="76"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-04-06"
                     /collected_by="Kaiyue Zhang"
WGS         JBMPXS010000001-JBMPXS010000006
WGS_SCAFLD  NZ_JBMPXS010000001-NZ_JBMPXS010000006
//
LOCUS       NZ_JBMPXM010000000   5801923 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus cereus strain 82, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPXM000000000
VERSION     NZ_JBMPXM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275438
            Assembly: GCF_049367055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5801923)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5801923)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPXM000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPXM000000000.  This version of the project
            (01) has the accession number NZ_JBMPXM010000000, and consists of
            sequences JBMPXM010000001-JBMPXM010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123.02919999999999x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049367055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:48:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,012
            CDSs (total)                      :: 5,851
            Genes (coding)                    :: 5,652
            CDSs (with protein)               :: 5,652
            Genes (RNA)                       :: 161
            rRNAs                             :: 15, 15, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 15, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 111
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 199
            CDSs (without protein)            :: 199
            Pseudo Genes (ambiguous residues) :: 0 of 199
            Pseudo Genes (frameshifted)       :: 81 of 199
            Pseudo Genes (incomplete)         :: 129 of 199
            Pseudo Genes (internal stop)      :: 29 of 199
            Pseudo Genes (multiple problems)  :: 34 of 199
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5801923
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="82"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-04-06"
                     /collected_by="Kaiyue Zhang"
WGS         JBMPXM010000001-JBMPXM010000006
WGS_SCAFLD  NZ_JBMPXM010000001-NZ_JBMPXM010000006
//
LOCUS       NZ_CAWLYR010000000   4766880 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas veronii Hm21 isolate ena-yuan-GCF_000464515.2, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAWLYR000000000
VERSION     NZ_CAWLYR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017012
            Assembly: GCF_963865435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii Hm21
  ORGANISM  Aeromonas veronii Hm21
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4766880)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWLYR000000000.1.
            The Aeromonas veronii Hm21 whole genome shotgun (WGS) project has
            the project accession NZ_CAWLYR000000000.  This version of the
            project (01) has the accession number NZ_CAWLYR010000000, and
            consists of sequences CAWLYR010000001-CAWLYR010000002.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963865435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:06:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,432
            CDSs (total)                      :: 4,273
            Genes (coding)                    :: 4,239
            CDSs (with protein)               :: 4,239
            Genes (RNA)                       :: 159
            rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 123
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 14 of 34
            Pseudo Genes (incomplete)         :: 21 of 34
            Pseudo Genes (internal stop)      :: 10 of 34
            Pseudo Genes (multiple problems)  :: 10 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4766880
                     /organism="Aeromonas veronii Hm21"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_000464515.2"
                     /db_xref="taxon:1347420"
WGS         CAWLYR010000001-CAWLYR010000002
WGS_SCAFLD  NZ_CAWLYR010000001-NZ_CAWLYR010000002
//
LOCUS       NZ_CAWOOA010000000   4803031 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida isolate ena-yuan-GCF_006243325.1, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAWOOA000000000
VERSION     NZ_CAWOOA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017959
            Assembly: GCF_963882465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4803031)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWOOA000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_CAWOOA000000000.  This version of the
            project (01) has the accession number NZ_CAWOOA010000000, and
            consists of sequences CAWOOA010000001-CAWOOA010000225.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963882465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:04:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,540
            CDSs (total)                      :: 4,440
            Genes (coding)                    :: 4,289
            CDSs (with protein)               :: 4,289
            Genes (RNA)                       :: 100
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 36 of 151
            Pseudo Genes (incomplete)         :: 116 of 151
            Pseudo Genes (internal stop)      :: 18 of 151
            Pseudo Genes (multiple problems)  :: 16 of 151
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4803031
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_006243325.1"
                     /db_xref="taxon:645"
WGS         CAWOOA010000001-CAWOOA010000225
WGS_SCAFLD  NZ_CAWOOA010000001-NZ_CAWOOA010000225
//
LOCUS       NZ_CAWPXL010000000   4753178 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas dhakensis isolate ena-yuan-GCF_016729585.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWPXL000000000
VERSION     NZ_CAWPXL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115016517
            Assembly: GCF_963892265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4753178)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWPXL000000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_CAWPXL000000000.  This version of the project
            (01) has the accession number NZ_CAWPXL010000000, and consists of
            sequences CAWPXL010000001-CAWPXL010000021.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963892265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:08:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,399
            CDSs (total)                      :: 4,272
            Genes (coding)                    :: 4,236
            CDSs (with protein)               :: 4,236
            Genes (RNA)                       :: 127
            rRNAs                             :: 7, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 106
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 18 of 37
            Pseudo Genes (incomplete)         :: 14 of 37
            Pseudo Genes (internal stop)      :: 10 of 37
            Pseudo Genes (multiple problems)  :: 5 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4753178
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_016729585.1"
                     /db_xref="taxon:196024"
WGS         CAWPXL010000001-CAWPXL010000021
WGS_SCAFLD  NZ_CAWPXL010000001-NZ_CAWPXL010000021
//
LOCUS       NZ_JBRAZT010000000   4114561 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Arthrobacter sp. SD1074B, whole genome shotgun sequencing project.
ACCESSION   NZ_JBRAZT000000000
VERSION     NZ_JBRAZT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50480396
            Assembly: GCF_056780195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Arthrobacter sp. SD1074B
  ORGANISM  Arthrobacter sp. SD1074B
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Micrococcaceae; Arthrobacter.
REFERENCE   1  (bases 1 to 4114561)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Tso,F., Ford,N.E.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4114561)
  AUTHORS   Garrell,A.-K., Swift,J.F., Pal,G., Pestalozzi,C., Castrillo,G.,
            Schlaeppi,K., Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRAZT000000000.1.
            The Arthrobacter sp. SD1074B whole genome shotgun (WGS) project has
            the project accession NZ_JBRAZT000000000.  This version of the
            project (01) has the accession number NZ_JBRAZT010000000, and
            consists of sequences JBRAZT010000001-JBRAZT010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 102x
            Sequencing Technology  :: Oxford Nanopore Technology
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:16:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,849
            CDSs (total)                      :: 3,776
            Genes (coding)                    :: 3,738
            CDSs (with protein)               :: 3,738
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 14 of 38
            Pseudo Genes (incomplete)         :: 30 of 38
            Pseudo Genes (internal stop)      :: 6 of 38
            Pseudo Genes (multiple problems)  :: 11 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4114561
                     /organism="Arthrobacter sp. SD1074B"
                     /mol_type="genomic DNA"
                     /strain="SD1074B"
                     /db_xref="taxon:3455268"
                     /geo_loc_name="Cape Verde"
                     /lat_lon="15.028 N 23.563 W"
WGS         JBRAZT010000001-JBRAZT010000003
WGS_SCAFLD  NZ_JBRAZT010000001-NZ_JBRAZT010000003
//
LOCUS       NZ_CAWOII010000000   4974499 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida isolate ena-yuan-GCF_003947375.1, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAWOII000000000
VERSION     NZ_CAWOII000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017798
            Assembly: GCF_963881385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4974499)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWOII000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_CAWOII000000000.  This version of the
            project (01) has the accession number NZ_CAWOII010000000, and
            consists of sequences CAWOII010000001-CAWOII010000110.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963881385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:12:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,795
            CDSs (total)                      :: 4,636
            Genes (coding)                    :: 4,510
            CDSs (with protein)               :: 4,510
            Genes (RNA)                       :: 159
            rRNAs                             :: 14, 5, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 1 (5S, 16S)
            partial rRNAs                     :: 4, 10 (16S, 23S)
            tRNAs                             :: 123
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 45 of 126
            Pseudo Genes (incomplete)         :: 91 of 126
            Pseudo Genes (internal stop)      :: 19 of 126
            Pseudo Genes (multiple problems)  :: 25 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4974499
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_003947375.1"
                     /db_xref="taxon:645"
WGS         CAWOII010000001-CAWOII010000110
WGS_SCAFLD  NZ_CAWOII010000001-NZ_CAWOII010000110
//
LOCUS       NZ_CAWQUB010000000   4535069 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas veronii isolate ena-yuan-GCF_021586915.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQUB000000000
VERSION     NZ_CAWQUB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018731
            Assembly: GCF_963897975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii (Aeromonas ichthiosmia)
  ORGANISM  Aeromonas veronii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4535069)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQUB000000000.1.
            The Aeromonas veronii whole genome shotgun (WGS) project has the
            project accession NZ_CAWQUB000000000.  This version of the project
            (01) has the accession number NZ_CAWQUB010000000, and consists of
            sequences CAWQUB010000001-CAWQUB010000003.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963897975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:21:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,183
            CDSs (total)                      :: 4,024
            Genes (coding)                    :: 3,979
            CDSs (with protein)               :: 3,979
            Genes (RNA)                       :: 159
            rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 124
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 21 of 45
            Pseudo Genes (incomplete)         :: 29 of 45
            Pseudo Genes (internal stop)      :: 7 of 45
            Pseudo Genes (multiple problems)  :: 10 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4535069
                     /organism="Aeromonas veronii"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_021586915.1"
                     /db_xref="taxon:654"
WGS         CAWQUB010000001-CAWQUB010000003
WGS_SCAFLD  NZ_CAWQUB010000001-NZ_CAWQUB010000003
//
LOCUS       NZ_JBRAZQ010000000   4478352 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Arthrobacter sp. T572, whole genome shotgun sequencing project.
ACCESSION   NZ_JBRAZQ000000000
VERSION     NZ_JBRAZQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50480400
            Assembly: GCF_056780115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Arthrobacter sp. T572
  ORGANISM  Arthrobacter sp. T572
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Micrococcaceae; Arthrobacter.
REFERENCE   1  (bases 1 to 4478352)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Tso,F., Ford,N.E.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4478352)
  AUTHORS   Garrell,A.-K., Swift,J.F., Pal,G., Pestalozzi,C., Castrillo,G.,
            Schlaeppi,K., Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRAZQ000000000.1.
            The Arthrobacter sp. T572 whole genome shotgun (WGS) project has
            the project accession NZ_JBRAZQ000000000.  This version of the
            project (01) has the accession number NZ_JBRAZQ010000000, and
            consists of sequences JBRAZQ010000001-JBRAZQ010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 74x
            Sequencing Technology  :: Oxford Nanopore Technology
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:13:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,184
            CDSs (total)                      :: 4,108
            Genes (coding)                    :: 4,076
            CDSs (with protein)               :: 4,076
            Genes (RNA)                       :: 76
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 19 of 32
            Pseudo Genes (incomplete)         :: 11 of 32
            Pseudo Genes (internal stop)      :: 2 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478352
                     /organism="Arthrobacter sp. T572"
                     /mol_type="genomic DNA"
                     /strain="T572"
                     /db_xref="taxon:3455269"
                     /geo_loc_name="Cape Verde"
                     /lat_lon="15.278 N 23.572 W"
WGS         JBRAZQ010000001-JBRAZQ010000002
WGS_SCAFLD  NZ_JBRAZQ010000001-NZ_JBRAZQ010000002
//
LOCUS       NZ_CDVPMG010000000   2975748 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Agrococcus jenensis isolate MarMAG_126562, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVPMG000000000
VERSION     NZ_CDVPMG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747245
            Assembly: GCF_977737985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Agrococcus jenensis (seawater metagenome)
  ORGANISM  Agrococcus jenensis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Microbacteriaceae; Agrococcus.
REFERENCE   1  (bases 1 to 2975748)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVPMG000000000.1.
            The Agrococcus jenensis whole genome shotgun (WGS) project has the
            project accession NZ_CDVPMG000000000.  This version of the project
            (01) has the accession number NZ_CDVPMG010000000, and consists of
            sequences CDVPMG010000001-CDVPMG010000057.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977737985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:23:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,957
            CDSs (total)                      :: 2,908
            Genes (coding)                    :: 2,879
            CDSs (with protein)               :: 2,879
            Genes (RNA)                       :: 49
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 3 of 29
            Pseudo Genes (incomplete)         :: 27 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2975748
                     /organism="Agrococcus jenensis"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126562"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:46353"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-05"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVPMG010000001-CDVPMG010000057
WGS_SCAFLD  NZ_CDVPMG010000001-NZ_CDVPMG010000057
//
LOCUS       NZ_CAWQNO010000000   4640721 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas veronii isolate ena-yuan-GCF_020639385.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQNO000000000
VERSION     NZ_CAWQNO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018683
            Assembly: GCF_963896405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii (Aeromonas ichthiosmia)
  ORGANISM  Aeromonas veronii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4640721)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQNO000000000.1.
            The Aeromonas veronii whole genome shotgun (WGS) project has the
            project accession NZ_CAWQNO000000000.  This version of the project
            (01) has the accession number NZ_CAWQNO010000000, and consists of
            sequences CAWQNO010000001-CAWQNO010000006.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963896405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:19:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,283
            CDSs (total)                      :: 4,135
            Genes (coding)                    :: 4,101
            CDSs (with protein)               :: 4,101
            Genes (RNA)                       :: 148
            rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 112
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 11 of 34
            Pseudo Genes (incomplete)         :: 25 of 34
            Pseudo Genes (internal stop)      :: 8 of 34
            Pseudo Genes (multiple problems)  :: 8 of 34
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4640721
                     /organism="Aeromonas veronii"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_020639385.1"
                     /db_xref="taxon:654"
WGS         CAWQNO010000001-CAWQNO010000006
WGS_SCAFLD  NZ_CAWQNO010000001-NZ_CAWQNO010000006
//
LOCUS       NZ_CAWPWG010000000   4884070 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas dhakensis isolate ena-yuan-GCF_017163915.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWPWG000000000
VERSION     NZ_CAWPWG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018441
            Assembly: GCF_963891925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4884070)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWPWG000000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_CAWPWG000000000.  This version of the project
            (01) has the accession number NZ_CAWPWG010000000, and consists of
            sequences CAWPWG010000001-CAWPWG010000018.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963891925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:20:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,540
            CDSs (total)                      :: 4,415
            Genes (coding)                    :: 4,378
            CDSs (with protein)               :: 4,378
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 6, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 2, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 7 (16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 19 of 37
            Pseudo Genes (incomplete)         :: 22 of 37
            Pseudo Genes (internal stop)      :: 8 of 37
            Pseudo Genes (multiple problems)  :: 11 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4884070
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_017163915.1"
                     /db_xref="taxon:196024"
WGS         CAWPWG010000001-CAWPWG010000018
WGS_SCAFLD  NZ_CAWPWG010000001-NZ_CAWPWG010000018
//
LOCUS       NZ_CAWQGM010000000   4895013 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas dhakensis isolate ena-yuan-GCF_019348695.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQGM000000000
VERSION     NZ_CAWQGM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018600
            Assembly: GCF_963894465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4895013)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQGM000000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_CAWQGM000000000.  This version of the project
            (01) has the accession number NZ_CAWQGM010000000, and consists of
            sequences CAWQGM010000001-CAWQGM010000026.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963894465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:21:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,565
            CDSs (total)                      :: 4,419
            Genes (coding)                    :: 4,377
            CDSs (with protein)               :: 4,377
            Genes (RNA)                       :: 146
            rRNAs                             :: 8, 10, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 9, 5 (5S, 16S, 23S)
            tRNAs                             :: 115
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 19 of 42
            Pseudo Genes (incomplete)         :: 27 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 12 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4895013
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_019348695.1"
                     /db_xref="taxon:196024"
WGS         CAWQGM010000001-CAWQGM010000026
WGS_SCAFLD  NZ_CAWQGM010000001-NZ_CAWQGM010000026
//
LOCUS       NZ_CAWPXU010000000   4770671 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas dhakensis isolate ena-yuan-GCF_016729785.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWPXU000000000
VERSION     NZ_CAWPXU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115016518
            Assembly: GCF_963892315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4770671)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWPXU000000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_CAWPXU000000000.  This version of the project
            (01) has the accession number NZ_CAWPXU010000000, and consists of
            sequences CAWPXU010000001-CAWPXU010000024.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963892315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:30:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,433
            CDSs (total)                      :: 4,303
            Genes (coding)                    :: 4,270
            CDSs (with protein)               :: 4,270
            Genes (RNA)                       :: 130
            rRNAs                             :: 6, 3, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 6 (5S, 16S, 23S)
            tRNAs                             :: 107
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 11 of 33
            Pseudo Genes (incomplete)         :: 26 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 8 of 33
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4770671
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_016729785.1"
                     /db_xref="taxon:196024"
WGS         CAWPXU010000001-CAWPXU010000024
WGS_SCAFLD  NZ_CAWPXU010000001-NZ_CAWPXU010000024
//
LOCUS       NZ_CDVXVH010000000   2965672 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Agrococcus jenensis isolate MarMAG_126563, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVXVH000000000
VERSION     NZ_CDVXVH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747280
            Assembly: GCF_977794435.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Agrococcus jenensis (seawater metagenome)
  ORGANISM  Agrococcus jenensis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Microbacteriaceae; Agrococcus.
REFERENCE   1  (bases 1 to 2965672)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVXVH000000000.1.
            The Agrococcus jenensis whole genome shotgun (WGS) project has the
            project accession NZ_CDVXVH000000000.  This version of the project
            (01) has the accession number NZ_CDVXVH010000000, and consists of
            sequences CDVXVH010000001-CDVXVH010000067.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977794435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:28:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,955
            CDSs (total)                      :: 2,907
            Genes (coding)                    :: 2,878
            CDSs (with protein)               :: 2,878
            Genes (RNA)                       :: 48
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 3 of 29
            Pseudo Genes (incomplete)         :: 27 of 29
            Pseudo Genes (internal stop)      :: 1 of 29
            Pseudo Genes (multiple problems)  :: 2 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965672
                     /organism="Agrococcus jenensis"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126563"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:46353"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-06"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVXVH010000001-CDVXVH010000067
WGS_SCAFLD  NZ_CDVXVH010000001-NZ_CDVXVH010000067
//
LOCUS       NZ_JAKZZT010000000   4696770 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain 10-Bac2299-29, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKZZT000000000
VERSION     NZ_JAKZZT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26332103
            Assembly: GCF_037546645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4696770)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Antibtiotic resistence bacteria from fish and aquatic environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4696770)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) Faculty of Veterinary Medicine Department
            of Production Medicine Section of Experimental BioMedicine,
            Norwegian University of Life Sciences, Oluf Thesens vei 22, As, As
            1433, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKZZT000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAKZZT000000000.  This version of the
            project (01) has the accession number NZ_JAKZZT010000000, and
            consists of sequences JAKZZT010000001-JAKZZT010000130.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAR-2022
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100 x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037546645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:32:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,495
            CDSs (total)                      :: 4,402
            Genes (coding)                    :: 4,207
            CDSs (with protein)               :: 4,207
            Genes (RNA)                       :: 93
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 86
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 195
            CDSs (without protein)            :: 195
            Pseudo Genes (ambiguous residues) :: 0 of 195
            Pseudo Genes (frameshifted)       :: 121 of 195
            Pseudo Genes (incomplete)         :: 60 of 195
            Pseudo Genes (internal stop)      :: 28 of 195
            Pseudo Genes (multiple problems)  :: 14 of 195
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4696770
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="10-Bac2299-29"
                     /isolation_source="fish"
                     /db_xref="taxon:645"
                     /geo_loc_name="Norway"
                     /collection_date="1985/1998"
WGS         JAKZZT010000001-JAKZZT010000130
WGS_SCAFLD  NZ_JAKZZT010000001-NZ_JAKZZT010000130
//
LOCUS       NZ_JAKZZU010000000   4719594 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain 9-Bac1682-92, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKZZU000000000
VERSION     NZ_JAKZZU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26332102
            Assembly: GCF_037546745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4719594)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Antibtiotic resistence bacteria from fish and aquatic environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4719594)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) Faculty of Veterinary Medicine Department
            of Production Medicine Section of Experimental BioMedicine,
            Norwegian University of Life Sciences, Oluf Thesens vei 22, As, As
            1433, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKZZU000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAKZZU000000000.  This version of the
            project (01) has the accession number NZ_JAKZZU010000000, and
            consists of sequences JAKZZU010000001-JAKZZU010000138.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAR-2022
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100 x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037546745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:33:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,514
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,237
            CDSs (with protein)               :: 4,237
            Genes (RNA)                       :: 85
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 192
            CDSs (without protein)            :: 192
            Pseudo Genes (ambiguous residues) :: 0 of 192
            Pseudo Genes (frameshifted)       :: 123 of 192
            Pseudo Genes (incomplete)         :: 56 of 192
            Pseudo Genes (internal stop)      :: 30 of 192
            Pseudo Genes (multiple problems)  :: 16 of 192
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4719594
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="9-Bac1682-92"
                     /isolation_source="fish"
                     /db_xref="taxon:645"
                     /geo_loc_name="Norway"
                     /collection_date="1985/1998"
WGS         JAKZZU010000001-JAKZZU010000138
WGS_SCAFLD  NZ_JAKZZU010000001-NZ_JAKZZU010000138
//
LOCUS       NZ_CAWPEC010000000   4350648 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas caviae isolate ena-yuan-GCF_008802295.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWPEC000000000
VERSION     NZ_CAWPEC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018081
            Assembly: GCF_963886915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas caviae
  ORGANISM  Aeromonas caviae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4350648)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWPEC000000000.1.
            The Aeromonas caviae whole genome shotgun (WGS) project has the
            project accession NZ_CAWPEC000000000.  This version of the project
            (01) has the accession number NZ_CAWPEC010000000, and consists of
            sequences CAWPEC010000001-CAWPEC010000107.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963886915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:31:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,121
            CDSs (total)                      :: 3,975
            Genes (coding)                    :: 3,920
            CDSs (with protein)               :: 3,920
            Genes (RNA)                       :: 146
            rRNAs                             :: 8, 11, 11 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 2, 11, 11 (5S, 16S, 23S)
            tRNAs                             :: 110
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 8 of 55
            Pseudo Genes (incomplete)         :: 50 of 55
            Pseudo Genes (internal stop)      :: 0 of 55
            Pseudo Genes (multiple problems)  :: 3 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4350648
                     /organism="Aeromonas caviae"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_008802295.1"
                     /db_xref="taxon:648"
WGS         CAWPEC010000001-CAWPEC010000107
WGS_SCAFLD  NZ_CAWPEC010000001-NZ_CAWPEC010000107
//
LOCUS       NZ_JAKZZM010000000   4816270 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain 17-Bac703, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKZZM000000000
VERSION     NZ_JAKZZM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26332110
            Assembly: GCF_037546305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4816270)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Antibtiotic resistence bacteria from fish and aquatic environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4816270)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) Faculty of Veterinary Medicine Department
            of Production Medicine Section of Experimental BioMedicine,
            Norwegian University of Life Sciences, Oluf Thesens vei 22, As, As
            1433, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKZZM000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAKZZM000000000.  This version of the
            project (01) has the accession number NZ_JAKZZM010000000, and
            consists of sequences JAKZZM010000001-JAKZZM010000136.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAR-2022
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100 x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037546305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:28:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,617
            CDSs (total)                      :: 4,521
            Genes (coding)                    :: 4,315
            CDSs (with protein)               :: 4,315
            Genes (RNA)                       :: 96
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 89
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 206
            CDSs (without protein)            :: 206
            Pseudo Genes (ambiguous residues) :: 0 of 206
            Pseudo Genes (frameshifted)       :: 127 of 206
            Pseudo Genes (incomplete)         :: 66 of 206
            Pseudo Genes (internal stop)      :: 31 of 206
            Pseudo Genes (multiple problems)  :: 17 of 206
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4816270
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="17-Bac703"
                     /isolation_source="fish"
                     /db_xref="taxon:645"
                     /geo_loc_name="Norway"
                     /collection_date="1985/1998"
WGS         JAKZZM010000001-JAKZZM010000136
WGS_SCAFLD  NZ_JAKZZM010000001-NZ_JAKZZM010000136
//
LOCUS       NZ_JAKZZV010000000   4695966 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain 8-Bac1995, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKZZV000000000
VERSION     NZ_JAKZZV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26332101
            Assembly: GCF_037546665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4695966)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Antibtiotic resistence bacteria from fish and aquatic environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4695966)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) Faculty of Veterinary Medicine Department
            of Production Medicine Section of Experimental BioMedicine,
            Norwegian University of Life Sciences, Oluf Thesens vei 22, As, As
            1433, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKZZV000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAKZZV000000000.  This version of the
            project (01) has the accession number NZ_JAKZZV010000000, and
            consists of sequences JAKZZV010000001-JAKZZV010000134.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAR-2022
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100 x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037546665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:32:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,488
            CDSs (total)                      :: 4,403
            Genes (coding)                    :: 4,201
            CDSs (with protein)               :: 4,201
            Genes (RNA)                       :: 85
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 78
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 202
            CDSs (without protein)            :: 202
            Pseudo Genes (ambiguous residues) :: 0 of 202
            Pseudo Genes (frameshifted)       :: 122 of 202
            Pseudo Genes (incomplete)         :: 66 of 202
            Pseudo Genes (internal stop)      :: 30 of 202
            Pseudo Genes (multiple problems)  :: 15 of 202
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4695966
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="8-Bac1995"
                     /isolation_source="fish"
                     /db_xref="taxon:645"
                     /geo_loc_name="Norway"
                     /collection_date="1985/1998"
WGS         JAKZZV010000001-JAKZZV010000134
WGS_SCAFLD  NZ_JAKZZV010000001-NZ_JAKZZV010000134
//
LOCUS       NZ_JAKZZW010000000   4672713 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas salmonicida strain 7-Bac151-92, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKZZW000000000
VERSION     NZ_JAKZZW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26332100
            Assembly: GCF_037546725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida
  ORGANISM  Aeromonas salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4672713)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Antibtiotic resistence bacteria from fish and aquatic environments
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4672713)
  AUTHORS   Dubey,S., Sorum,H. and Munangandu,H.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2022) Faculty of Veterinary Medicine Department
            of Production Medicine Section of Experimental BioMedicine,
            Norwegian University of Life Sciences, Oluf Thesens vei 22, As, As
            1433, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKZZW000000000.1.
            The Aeromonas salmonicida whole genome shotgun (WGS) project has
            the project accession NZ_JAKZZW000000000.  This version of the
            project (01) has the accession number NZ_JAKZZW010000000, and
            consists of sequences JAKZZW010000001-JAKZZW010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAR-2022
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100 x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037546725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:35:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,451
            CDSs (total)                      :: 4,360
            Genes (coding)                    :: 4,169
            CDSs (with protein)               :: 4,169
            Genes (RNA)                       :: 91
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 191
            CDSs (without protein)            :: 191
            Pseudo Genes (ambiguous residues) :: 0 of 191
            Pseudo Genes (frameshifted)       :: 124 of 191
            Pseudo Genes (incomplete)         :: 53 of 191
            Pseudo Genes (internal stop)      :: 31 of 191
            Pseudo Genes (multiple problems)  :: 16 of 191
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4672713
                     /organism="Aeromonas salmonicida"
                     /mol_type="genomic DNA"
                     /strain="7-Bac151-92"
                     /isolation_source="fish"
                     /db_xref="taxon:645"
                     /geo_loc_name="Norway"
                     /collection_date="1985/1998"
WGS         JAKZZW010000001-JAKZZW010000117
WGS_SCAFLD  NZ_JAKZZW010000001-NZ_JAKZZW010000117
//
LOCUS       NZ_JAPRAE010000000   2236380 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aliarcobacter butzleri strain W65, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAPRAE000000000
VERSION     NZ_JAPRAE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31973011
            Assembly: GCF_049278195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aliarcobacter butzleri (Arcobacter butzleri)
  ORGANISM  Aliarcobacter butzleri
            Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Arcobacteraceae; Aliarcobacter.
REFERENCE   1  (bases 1 to 2236380)
  AUTHORS   Carraro,L.
  TITLE     Arcobacter genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2236380)
  AUTHORS   Carraro,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2022) Comparative Biomedicine and Food Science,
            University of Padova, Viale dell'Universita, 16, Legnaro, Padova
            35020, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPRAE000000000.1.
            The Aliarcobacter butzleri whole genome shotgun (WGS) project has
            the project accession NZ_JAPRAE000000000.  This version of the
            project (01) has the accession number NZ_JAPRAE010000000, and
            consists of sequences JAPRAE010000001-JAPRAE010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2022
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1651.4074084010767x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049278195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:06:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,288
            CDSs (total)                      :: 2,234
            Genes (coding)                    :: 2,211
            CDSs (with protein)               :: 2,211
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 1 of 23
            Pseudo Genes (incomplete)         :: 20 of 23
            Pseudo Genes (internal stop)      :: 2 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236380
                     /organism="Aliarcobacter butzleri"
                     /mol_type="genomic DNA"
                     /strain="W65"
                     /db_xref="taxon:28197"
WGS         JAPRAE010000001-JAPRAE010000033
WGS_SCAFLD  NZ_JAPRAE010000001-NZ_JAPRAE010000033
//
LOCUS       NZ_JAPRAF010000000   2236140 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aliarcobacter butzleri strain W66, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAPRAF000000000
VERSION     NZ_JAPRAF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31973012
            Assembly: GCF_049278175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aliarcobacter butzleri (Arcobacter butzleri)
  ORGANISM  Aliarcobacter butzleri
            Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Arcobacteraceae; Aliarcobacter.
REFERENCE   1  (bases 1 to 2236140)
  AUTHORS   Carraro,L.
  TITLE     Arcobacter genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2236140)
  AUTHORS   Carraro,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2022) Comparative Biomedicine and Food Science,
            University of Padova, Viale dell'Universita, 16, Legnaro, Padova
            35020, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPRAF000000000.1.
            The Aliarcobacter butzleri whole genome shotgun (WGS) project has
            the project accession NZ_JAPRAF000000000.  This version of the
            project (01) has the accession number NZ_JAPRAF010000000, and
            consists of sequences JAPRAF010000001-JAPRAF010000033.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2022
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1769.1450445857595x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049278175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,287
            CDSs (total)                      :: 2,234
            Genes (coding)                    :: 2,210
            CDSs (with protein)               :: 2,210
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 1 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236140
                     /organism="Aliarcobacter butzleri"
                     /mol_type="genomic DNA"
                     /strain="W66"
                     /db_xref="taxon:28197"
WGS         JAPRAF010000001-JAPRAF010000033
WGS_SCAFLD  NZ_JAPRAF010000001-NZ_JAPRAF010000033
//
LOCUS       NZ_JBMPAT010000000   4931165 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Aeromonas hydrophila strain 18577_B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPAT000000000
VERSION     NZ_JBMPAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47597742
            Assembly: GCF_049322135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas hydrophila
  ORGANISM  Aeromonas hydrophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4931165)
  AUTHORS   Sedlakova,M.H., Fiserova,K. and Mlynarcik,P.
  TITLE     Resistance to colistin in a tertiary hospital, Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4931165)
  AUTHORS   Mlynarcik,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Department of Microbiology, Palacky
            University Olomouc, Hnevotinska 3, Olomouc 775 15, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPAT000000000.1.
            The Aeromonas hydrophila whole genome shotgun (WGS) project has the
            project accession NZ_JBMPAT000000000.  This version of the project
            (01) has the accession number NZ_JBMPAT010000000, and consists of
            sequences JBMPAT010000001-JBMPAT010000111.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049322135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:25:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,588
            CDSs (total)                      :: 4,489
            Genes (coding)                    :: 4,428
            CDSs (with protein)               :: 4,428
            Genes (RNA)                       :: 99
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 17 of 61
            Pseudo Genes (incomplete)         :: 44 of 61
            Pseudo Genes (internal stop)      :: 12 of 61
            Pseudo Genes (multiple problems)  :: 10 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4931165
                     /organism="Aeromonas hydrophila"
                     /mol_type="genomic DNA"
                     /strain="18577_B"
                     /isolation_source="Clinical sample from a hospital
                     setting"
                     /host="Homo sapiens"
                     /db_xref="taxon:644"
                     /geo_loc_name="Czech Republic: Olomouc (Institute of
                     Microbiology, Faculty of Medicine, UPOL)"
                     /collection_date="2018-01-01/2024-12-31"
WGS         JBMPAT010000001-JBMPAT010000111
WGS_SCAFLD  NZ_JBMPAT010000001-NZ_JBMPAT010000111
//
LOCUS       NZ_JBWYIR010000000   3073656 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7654, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIR000000000
VERSION     NZ_JBWYIR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804043
            Assembly: GCF_056779855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7654
  ORGANISM  Acinetobacter sp. ANC_7654
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3073656)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIR000000000.1.
            The Acinetobacter sp. ANC_7654 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIR000000000.  This version of the
            project (01) has the accession number NZ_JBWYIR010000000, and
            consists of sequences JBWYIR010000001-JBWYIR010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:52:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,966
            CDSs (total)                      :: 2,893
            Genes (coding)                    :: 2,862
            CDSs (with protein)               :: 2,862
            Genes (RNA)                       :: 73
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 11 of 31
            Pseudo Genes (incomplete)         :: 17 of 31
            Pseudo Genes (internal stop)      :: 8 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073656
                     /organism="Acinetobacter sp. ANC_7654"
                     /mol_type="genomic DNA"
                     /strain="ANC_7654"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697651"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIR010000001-JBWYIR010000038
WGS_SCAFLD  NZ_JBWYIR010000001-NZ_JBWYIR010000038
//
LOCUS       NZ_JBWYIW010000000   2987656 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7513, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIW000000000
VERSION     NZ_JBWYIW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804038
            Assembly: GCF_056779915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7513
  ORGANISM  Acinetobacter sp. ANC_7513
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 2987656)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIW000000000.1.
            The Acinetobacter sp. ANC_7513 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIW000000000.  This version of the
            project (01) has the accession number NZ_JBWYIW010000000, and
            consists of sequences JBWYIW010000001-JBWYIW010000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.2x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:46:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,893
            CDSs (total)                      :: 2,823
            Genes (coding)                    :: 2,792
            CDSs (with protein)               :: 2,792
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 9 of 31
            Pseudo Genes (incomplete)         :: 21 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2987656
                     /organism="Acinetobacter sp. ANC_7513"
                     /mol_type="genomic DNA"
                     /strain="ANC_7513"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697646"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIW010000001-JBWYIW010000043
WGS_SCAFLD  NZ_JBWYIW010000001-NZ_JBWYIW010000043
//
LOCUS       NZ_JBWYIT010000000   3000421 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7634, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIT000000000
VERSION     NZ_JBWYIT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804041
            Assembly: GCF_056779875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7634
  ORGANISM  Acinetobacter sp. ANC_7634
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3000421)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIT000000000.1.
            The Acinetobacter sp. ANC_7634 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIT000000000.  This version of the
            project (01) has the accession number NZ_JBWYIT010000000, and
            consists of sequences JBWYIT010000001-JBWYIT010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.6x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:50:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,898
            CDSs (total)                      :: 2,828
            Genes (coding)                    :: 2,795
            CDSs (with protein)               :: 2,795
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 13 of 33
            Pseudo Genes (incomplete)         :: 24 of 33
            Pseudo Genes (internal stop)      :: 4 of 33
            Pseudo Genes (multiple problems)  :: 7 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000421
                     /organism="Acinetobacter sp. ANC_7634"
                     /mol_type="genomic DNA"
                     /strain="ANC_7634"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697649"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIT010000001-JBWYIT010000051
WGS_SCAFLD  NZ_JBWYIT010000001-NZ_JBWYIT010000051
//
LOCUS       NZ_JBWYIV010000000   3047621 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7553, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIV000000000
VERSION     NZ_JBWYIV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804039
            Assembly: GCF_056779895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7553
  ORGANISM  Acinetobacter sp. ANC_7553
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3047621)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIV000000000.1.
            The Acinetobacter sp. ANC_7553 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIV000000000.  This version of the
            project (01) has the accession number NZ_JBWYIV010000000, and
            consists of sequences JBWYIV010000001-JBWYIV010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:50:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,949
            CDSs (total)                      :: 2,878
            Genes (coding)                    :: 2,826
            CDSs (with protein)               :: 2,826
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 20 of 52
            Pseudo Genes (incomplete)         :: 35 of 52
            Pseudo Genes (internal stop)      :: 11 of 52
            Pseudo Genes (multiple problems)  :: 12 of 52
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047621
                     /organism="Acinetobacter sp. ANC_7553"
                     /mol_type="genomic DNA"
                     /strain="ANC_7553"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697647"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIV010000001-JBWYIV010000072
WGS_SCAFLD  NZ_JBWYIV010000001-NZ_JBWYIV010000072
//
LOCUS       NZ_JBWYIQ010000000   2905807 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7682, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIQ000000000
VERSION     NZ_JBWYIQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804045
            Assembly: GCF_056779795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7682
  ORGANISM  Acinetobacter sp. ANC_7682
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 2905807)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIQ000000000.1.
            The Acinetobacter sp. ANC_7682 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIQ000000000.  This version of the
            project (01) has the accession number NZ_JBWYIQ010000000, and
            consists of sequences JBWYIQ010000001-JBWYIQ010000120.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:51:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,851
            CDSs (total)                      :: 2,781
            Genes (coding)                    :: 2,702
            CDSs (with protein)               :: 2,702
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 21 of 79
            Pseudo Genes (incomplete)         :: 54 of 79
            Pseudo Genes (internal stop)      :: 20 of 79
            Pseudo Genes (multiple problems)  :: 13 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2905807
                     /organism="Acinetobacter sp. ANC_7682"
                     /mol_type="genomic DNA"
                     /strain="ANC_7682"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697653"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIQ010000001-JBWYIQ010000120
WGS_SCAFLD  NZ_JBWYIQ010000001-NZ_JBWYIQ010000120
//
LOCUS       NZ_JBWYIX010000000   3011620 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7512, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIX000000000
VERSION     NZ_JBWYIX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804037
            Assembly: GCF_056779935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7512
  ORGANISM  Acinetobacter sp. ANC_7512
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3011620)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIX000000000.1.
            The Acinetobacter sp. ANC_7512 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIX000000000.  This version of the
            project (01) has the accession number NZ_JBWYIX010000000, and
            consists of sequences JBWYIX010000001-JBWYIX010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:53:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,893
            CDSs (total)                      :: 2,820
            Genes (coding)                    :: 2,777
            CDSs (with protein)               :: 2,777
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 13 of 43
            Pseudo Genes (incomplete)         :: 30 of 43
            Pseudo Genes (internal stop)      :: 5 of 43
            Pseudo Genes (multiple problems)  :: 4 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011620
                     /organism="Acinetobacter sp. ANC_7512"
                     /mol_type="genomic DNA"
                     /strain="ANC_7512"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697645"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIX010000001-JBWYIX010000059
WGS_SCAFLD  NZ_JBWYIX010000001-NZ_JBWYIX010000059
//
LOCUS       NZ_JBWYIS010000000   3031398 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter sp. ANC_7635, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWYIS000000000
VERSION     NZ_JBWYIS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56804042
            Assembly: GCF_056779945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter sp. ANC_7635
  ORGANISM  Acinetobacter sp. ANC_7635
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3031398)
  AUTHORS   Knipper,A.-D., Spanelova,P., Radolfova-Krizova,L., Maixnerova,M.,
            Kyselkova,M., Neuhaus,S. and Nemec,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Product Hygiene and Disinfection
            Strategies, German Federal Instiute for Risk Assessment (BfR),
            Max-Dohrn-Str. 8-10, Berlin 10589, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYIS000000000.1.
            The Acinetobacter sp. ANC_7635 whole genome shotgun (WGS) project
            has the project accession NZ_JBWYIS000000000.  This version of the
            project (01) has the accession number NZ_JBWYIS010000000, and
            consists of sequences JBWYIS010000001-JBWYIS010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. Spades_v3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 96.5x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:53:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,979
            CDSs (total)                      :: 2,908
            Genes (coding)                    :: 2,881
            CDSs (with protein)               :: 2,881
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 5 of 27
            Pseudo Genes (incomplete)         :: 22 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            Pseudo Genes (multiple problems)  :: 4 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3031398
                     /organism="Acinetobacter sp. ANC_7635"
                     /mol_type="genomic DNA"
                     /strain="ANC_7635"
                     /isolation_source="ground, feces"
                     /host="Bos taurus"
                     /db_xref="taxon:3697650"
                     /geo_loc_name="Czechia"
                     /collection_date="2022"
WGS         JBWYIS010000001-JBWYIS010000063
WGS_SCAFLD  NZ_JBWYIS010000001-NZ_JBWYIS010000063
//
LOCUS       NZ_JBRREC010000000   4723974 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas sp. STEN029, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRREC000000000
VERSION     NZ_JBRREC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52029971
            Assembly: GCF_056760015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas sp. STEN029
  ORGANISM  Stenotrophomonas sp. STEN029
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas.
REFERENCE   1  (bases 1 to 4723974)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Genomic Analysis of Environmentally Sourced Stenotrophomonas
            Species from Fiji and Australia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4723974)
  AUTHORS   Wyrsch,E., Drigo,B., Li,D. and Djordjevic,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2025) Australian Institute for Microbiology and
            Infection, University of Technology Sydney, 15 Broadway, Sydney,
            NSW 2007, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRREC000000000.1.
            The Stenotrophomonas sp. STEN029 whole genome shotgun (WGS) project
            has the project accession NZ_JBRREC000000000.  This version of the
            project (01) has the accession number NZ_JBRREC010000000, and
            consists of sequences JBRREC010000001-JBRREC010000221.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: shovill v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.7x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056760015.1-RS_2026_04_17
            Annotation Date                   :: 04/17/2026 22:18:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,110
            CDSs (total)                      :: 4,042
            Genes (coding)                    :: 3,991
            CDSs (with protein)               :: 3,991
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 14 of 51
            Pseudo Genes (incomplete)         :: 35 of 51
            Pseudo Genes (internal stop)      :: 6 of 51
            Pseudo Genes (multiple problems)  :: 4 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4723974
                     /organism="Stenotrophomonas sp. STEN029"
                     /mol_type="genomic DNA"
                     /strain="STEN029"
                     /isolation_source="Influent Wastewater"
                     /db_xref="taxon:3466895"
                     /geo_loc_name="Australia"
                     /collection_date="2019"
WGS         JBRREC010000001-JBRREC010000221
WGS_SCAFLD  NZ_JBRREC010000001-NZ_JBRREC010000221
//
LOCUS       NZ_JBWPWI010000000   1557825 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium sp. C0047B2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWPWI000000000
VERSION     NZ_JBWPWI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50493527
            Assembly: GCF_056590555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium sp. C0047B2
  ORGANISM  Bifidobacterium sp. C0047B2
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 1557825)
  AUTHORS   France,M., Rutt,L. and Ravel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Institute for Genome Sciences, University
            of Maryland Baltimore, 670 West Baltimore Street, HSF III,
            Baltimore, MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWPWI000000000.1.
            The Bifidobacterium sp. C0047B2 whole genome shotgun (WGS) project
            has the project accession NZ_JBWPWI000000000.  This version of the
            project (01) has the accession number NZ_JBWPWI010000000, and
            consists of sequences JBWPWI010000001-JBWPWI010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056590555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:17:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,247
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,180
            CDSs (with protein)               :: 1,180
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 0 of 14
            Pseudo Genes (multiple problems)  :: 2 of 14
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557825
                     /organism="Bifidobacterium sp. C0047B2"
                     /mol_type="genomic DNA"
                     /strain="C0047B2"
                     /isolation_source="ENVO:02000040"
                     /host="Homo sapiens"
                     /db_xref="taxon:3697428"
                     /geo_loc_name="USA"
                     /lat_lon="39.29 N 76.61 W"
                     /collection_date="2018"
WGS         JBWPWI010000001-JBWPWI010000012
WGS_SCAFLD  NZ_JBWPWI010000001-NZ_JBWPWI010000012
//
LOCUS       NZ_JBWPWF010000000   1564064 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium sp. C0047B5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWPWF000000000
VERSION     NZ_JBWPWF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50493530
            Assembly: GCF_056590485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium sp. C0047B5
  ORGANISM  Bifidobacterium sp. C0047B5
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 1564064)
  AUTHORS   France,M., Rutt,L. and Ravel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Institute for Genome Sciences, University
            of Maryland Baltimore, 670 West Baltimore Street, HSF III,
            Baltimore, MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWPWF000000000.1.
            The Bifidobacterium sp. C0047B5 whole genome shotgun (WGS) project
            has the project accession NZ_JBWPWF000000000.  This version of the
            project (01) has the accession number NZ_JBWPWF010000000, and
            consists of sequences JBWPWF010000001-JBWPWF010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056590485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:17:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,255
            CDSs (total)                      :: 1,201
            Genes (coding)                    :: 1,188
            CDSs (with protein)               :: 1,188
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 5 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 2 of 13
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564064
                     /organism="Bifidobacterium sp. C0047B5"
                     /mol_type="genomic DNA"
                     /strain="C0047B5"
                     /isolation_source="ENVO:02000040"
                     /host="Homo sapiens"
                     /db_xref="taxon:3697425"
                     /geo_loc_name="USA"
                     /lat_lon="39.29 N 76.61 W"
                     /collection_date="2018"
WGS         JBWPWF010000001-JBWPWF010000018
WGS_SCAFLD  NZ_JBWPWF010000001-NZ_JBWPWF010000018
//
LOCUS       NZ_JASOOL010000000   1613488 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium sp. UMB1197, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JASOOL000000000
VERSION     NZ_JASOOL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34996498
            Assembly: GCF_030217745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium sp. UMB1197
  ORGANISM  Bifidobacterium sp. UMB1197
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 1613488)
  AUTHORS   Du,J.
  TITLE     Cataloging the Phylogenetic Diversity of Human Bladder Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1613488)
  AUTHORS   Du,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAY-2023) LUMC, Loyola University Chicago, S 1st
            avenue, Chicago, IL 60153, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JASOOL000000000.1.
            The Bifidobacterium sp. UMB1197 whole genome shotgun (WGS) project
            has the project accession NZ_JASOOL000000000.  This version of the
            project (01) has the accession number NZ_JASOOL010000000, and
            consists of sequences JASOOL010000001-JASOOL010000123.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.14.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 306.415x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030217745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:15:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,308
            CDSs (total)                      :: 1,257
            Genes (coding)                    :: 1,232
            CDSs (with protein)               :: 1,232
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 3 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613488
                     /organism="Bifidobacterium sp. UMB1197"
                     /mol_type="genomic DNA"
                     /strain="UMB1197"
                     /isolation_source="Urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:3046326"
                     /geo_loc_name="USA: Maywood, IL"
                     /lat_lon="41.85911095 N 87.83527146 W"
WGS         JASOOL010000001-JASOOL010000123
WGS_SCAFLD  NZ_JASOOL010000001-NZ_JASOOL010000123
//
LOCUS       NZ_JBWPWH010000000   1554772 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium sp. C0047B3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWPWH000000000
VERSION     NZ_JBWPWH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50493528
            Assembly: GCF_056590535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium sp. C0047B3
  ORGANISM  Bifidobacterium sp. C0047B3
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 1554772)
  AUTHORS   France,M., Rutt,L. and Ravel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Institute for Genome Sciences, University
            of Maryland Baltimore, 670 West Baltimore Street, HSF III,
            Baltimore, MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWPWH000000000.1.
            The Bifidobacterium sp. C0047B3 whole genome shotgun (WGS) project
            has the project accession NZ_JBWPWH000000000.  This version of the
            project (01) has the accession number NZ_JBWPWH010000000, and
            consists of sequences JBWPWH010000001-JBWPWH010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056590535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:18:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,247
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,181
            CDSs (with protein)               :: 1,181
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 5 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 2 of 13
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554772
                     /organism="Bifidobacterium sp. C0047B3"
                     /mol_type="genomic DNA"
                     /strain="C0047B3"
                     /isolation_source="ENVO:02000040"
                     /host="Homo sapiens"
                     /db_xref="taxon:3697427"
                     /geo_loc_name="USA"
                     /lat_lon="39.29 N 76.61 W"
                     /collection_date="2018"
WGS         JBWPWH010000001-JBWPWH010000012
WGS_SCAFLD  NZ_JBWPWH010000001-NZ_JBWPWH010000012
//
LOCUS       NZ_JBWPWG010000000   1557735 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium sp. C0047B4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWPWG000000000
VERSION     NZ_JBWPWG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50493529
            Assembly: GCF_056590515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium sp. C0047B4
  ORGANISM  Bifidobacterium sp. C0047B4
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 1557735)
  AUTHORS   France,M., Rutt,L. and Ravel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Institute for Genome Sciences, University
            of Maryland Baltimore, 670 West Baltimore Street, HSF III,
            Baltimore, MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWPWG000000000.1.
            The Bifidobacterium sp. C0047B4 whole genome shotgun (WGS) project
            has the project accession NZ_JBWPWG000000000.  This version of the
            project (01) has the accession number NZ_JBWPWG010000000, and
            consists of sequences JBWPWG010000001-JBWPWG010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056590515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:17:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,257
            CDSs (total)                      :: 1,200
            Genes (coding)                    :: 1,187
            CDSs (with protein)               :: 1,187
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 5 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 5 of 13
            Pseudo Genes (incomplete)         :: 10 of 13
            Pseudo Genes (internal stop)      :: 0 of 13
            Pseudo Genes (multiple problems)  :: 2 of 13
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557735
                     /organism="Bifidobacterium sp. C0047B4"
                     /mol_type="genomic DNA"
                     /strain="C0047B4"
                     /isolation_source="ENVO:02000040"
                     /host="Homo sapiens"
                     /db_xref="taxon:3697426"
                     /geo_loc_name="USA"
                     /lat_lon="39.29 N 76.61 W"
                     /collection_date="2018"
WGS         JBWPWG010000001-JBWPWG010000018
WGS_SCAFLD  NZ_JBWPWG010000001-NZ_JBWPWG010000018
//
LOCUS       NZ_JSDZ01000000      2238534 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium bifidum strain LMG 11583, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JSDZ00000000
VERSION     NZ_JSDZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03097404
            Assembly: GCF_001020335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium bifidum
  ORGANISM  Bifidobacterium bifidum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2238534)
  AUTHORS   Duranti,S., Milani,C., Lugli,G.A., Turroni,F., Mancabelli,L.,
            Sanchez,B., Ferrario,C., Viappiani,A., Mangifesta,M., Mancino,W.,
            Gueimonde,M., Margolles,A., van Sinderen,D. and Ventura,M.
  TITLE     Insights from genomes of representatives of the human gut commensal
            Bifidobacterium bifidum
  JOURNAL   Environ Microbiol 17 (7), 2515-2531 (2015)
   PUBMED   25523018
REFERENCE   2  (bases 1 to 2238534)
  AUTHORS   Ventura,M., Duranti,S., Milani,C., Lugli,G.A. and Mancabelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2014) Life Sciences, University of Parma, Via
            Parco Area delle Scienze 11/A, Parma 43124, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSDZ00000000.1.
            The Bifidobacterium bifidum whole genome shotgun (WGS) project has
            the project accession NZ_JSDZ00000000.  This version of the project
            (01) has the accession number NZ_JSDZ01000000, and consists of
            sequences JSDZ01000001-JSDZ01000017.
            Bacteria available from BCCM/LMG bacteria collection.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Mira v. 4.0
            Assembly Name         :: Bbif08v4
            Genome Coverage       :: 109x
            Sequencing Technology :: Ion Torrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001020335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:32:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,957
            CDSs (total)                      :: 1,888
            Genes (coding)                    :: 1,813
            CDSs (with protein)               :: 1,813
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 33 of 75
            Pseudo Genes (incomplete)         :: 55 of 75
            Pseudo Genes (internal stop)      :: 2 of 75
            Pseudo Genes (multiple problems)  :: 15 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238534
                     /organism="Bifidobacterium bifidum"
                     /mol_type="genomic DNA"
                     /strain="LMG 11583"
                     /isolation_source="Adult stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:1681"
WGS         JSDZ01000001-JSDZ01000017
WGS_SCAFLD  NZ_JSDZ01000001-NZ_JSDZ01000017
//
LOCUS       NZ_JXNQ01000000      3108041 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain ST265, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JXNQ00000000
VERSION     NZ_JXNQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03286867
            Assembly: GCF_001013115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3108041)
  AUTHORS   Black,M., Moolhuijzen,P., Barrero,R., La,T., Phillips,N.,
            Hampson,D., Herbst,W., Barth,S. and Bellgard,M.
  TITLE     Analysis of Multiple Brachyspira hyodysenteriae Genomes Confirms
            That the Species Is Relatively Conserved but Has Potentially
            Important Strain Variation
  JOURNAL   PLoS One 10 (6), e0131050 (2015)
   PUBMED   26098837
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108041)
  AUTHORS   Black,M.L., Moolhuijzen,P.M., Barrero,R., La,T., Phillips,N.D.,
            Hampson,D.J., Herbst,W., Barth,S. and Bellgard,M.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2015) Centre for Comparative Genomics, Murdoch
            University, South Street, Perth, WA 6150, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JXNQ00000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JXNQ00000000.  This version of the
            project (01) has the accession number NZ_JXNQ01000000, and consists
            of sequences JXNQ01000001-JXNQ01000209.
            Sample available from the Reference Centre for Intestinal
            Spirochetes at Murdoch University and from the collection at JLU
            Giessen.
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 29-NOV-2013
            Assembly Method        :: Velvet v. 1.2.08
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 309.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001013115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:29:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,862
            CDSs (total)                      :: 2,822
            Genes (coding)                    :: 2,751
            CDSs (with protein)               :: 2,751
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 14 of 71
            Pseudo Genes (incomplete)         :: 52 of 71
            Pseudo Genes (internal stop)      :: 7 of 71
            Pseudo Genes (multiple problems)  :: 2 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108041
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="ST265"
                     /host="Sus scrofa"
                     /db_xref="taxon:159"
                     /geo_loc_name="Spain"
WGS         JXNQ01000001-JXNQ01000209
WGS_SCAFLD  NZ_JXNQ01000001-NZ_JXNQ01000209
//
LOCUS       NZ_AQND01000000      3297701 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis 66/59, whole genome shotgun sequencing project.
ACCESSION   NZ_AQND00000000
VERSION     NZ_AQND00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00811207
            Assembly: GCF_000366865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis 66/59
  ORGANISM  Brucella melitensis 66/59
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3297701)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Brucella melitensis 66/59
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3297701)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQND00000000.1.
            The Brucella melitensis 66/59 whole genome shotgun (WGS) project
            has the project accession NZ_AQND00000000.  This version of the
            project (01) has the accession number NZ_AQND01000000, and consists
            of sequences AQND01000001-AQND01000012.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R41689
            Assembly Name         :: Bruc_meli_66_59_V1
            Genome Coverage       :: 208.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000366865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,238
            CDSs (total)                      :: 3,175
            Genes (coding)                    :: 3,010
            CDSs (with protein)               :: 3,010
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 106 of 165
            Pseudo Genes (incomplete)         :: 35 of 165
            Pseudo Genes (internal stop)      :: 45 of 165
            Pseudo Genes (multiple problems)  :: 18 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3297701
                     /organism="Brucella melitensis 66/59"
                     /mol_type="genomic DNA"
                     /strain="66/59"
                     /host="Ovine"
                     /db_xref="taxon:1160224"
                     /geo_loc_name="India"
                     /collection_date="1966"
WGS         AQND01000001-AQND01000012
WGS_SCAFLD  NZ_AQND01000001-NZ_AQND01000012
//
LOCUS       NZ_AVQA01000000      2436344 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium breve MCC 0121, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AVQA00000000
VERSION     NZ_AVQA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03978796
            Assembly: GCF_001264045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium breve MCC 0121
  ORGANISM  Bifidobacterium breve MCC 0121
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2436344)
  AUTHORS   Odamaki,T., Horigome,A., Sugahara,H., Hashikura,N., Minami,J.,
            Xiao,J.Z. and Abe,F.
  TITLE     Comparative Genomics Revealed Genetic Diversity and
            Species/Strain-Level Differences in Carbohydrate Metabolism of
            Three Probiotic Bifidobacterial Species
  JOURNAL   Int J Genomics 2015, 567809 (2015)
   PUBMED   26236711
REFERENCE   2  (bases 1 to 2436344)
  AUTHORS   Odamaki,T., Horigome,A., Sugahara,H., Hashikura,N., Xiao,J.-Z. and
            Abe,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2013) Biological Function Research Depertment,
            Food Science and Technology Institute, Morinaga Milk Industry Co.,
            Ltd, 5-1-83 Higashihara, Zama, Kanagawa 252-8583, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AVQA00000000.1.
            The Bifidobacterium breve MCC 0121 whole genome shotgun (WGS)
            project has the project accession NZ_AVQA00000000.  This version of
            the project (01) has the accession number NZ_AVQA01000000, and
            consists of sequences AVQA01000001-AVQA01000027.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria available from Food Science and Technology Institute,
            Morinaga Milk Industry Co.,  Ltd., 5-1-83 Higashihara, Zama-City,
            Kanagawa-Pref. 252-8583, Japan.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC De Novo Assembly v. 6.0
            Expected Final Version :: Yes
            Genome Coverage        :: 55.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001264045.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,164
            CDSs (total)                      :: 2,104
            Genes (coding)                    :: 2,005
            CDSs (with protein)               :: 2,005
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 25 of 99
            Pseudo Genes (incomplete)         :: 76 of 99
            Pseudo Genes (internal stop)      :: 12 of 99
            Pseudo Genes (multiple problems)  :: 12 of 99
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436344
                     /organism="Bifidobacterium breve MCC 0121"
                     /mol_type="genomic DNA"
                     /strain="MCC 0121"
                     /isolation_source="infant feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1365960"
                     /geo_loc_name="Japan"
WGS         AVQA01000001-AVQA01000027
WGS_SCAFLD  NZ_AVQA01000001-NZ_AVQA01000027
//
LOCUS       NZ_JSDS01000000      2191816 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium bifidum strain 156B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JSDS00000000
VERSION     NZ_JSDS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03097399
            Assembly: GCF_001020255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium bifidum
  ORGANISM  Bifidobacterium bifidum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2191816)
  AUTHORS   Duranti,S., Milani,C., Lugli,G.A., Turroni,F., Mancabelli,L.,
            Sanchez,B., Ferrario,C., Viappiani,A., Mangifesta,M., Mancino,W.,
            Gueimonde,M., Margolles,A., van Sinderen,D. and Ventura,M.
  TITLE     Insights from genomes of representatives of the human gut commensal
            Bifidobacterium bifidum
  JOURNAL   Environ Microbiol 17 (7), 2515-2531 (2015)
   PUBMED   25523018
REFERENCE   2  (bases 1 to 2191816)
  AUTHORS   Ventura,M., Duranti,S., Milani,C., Lugli,G.A. and Mancabelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-OCT-2014) Life Sciences, University of Parma, Via
            Parco Area delle Scienze 11/A, Parma 43124, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSDS00000000.1.
            The Bifidobacterium bifidum whole genome shotgun (WGS) project has
            the project accession NZ_JSDS00000000.  This version of the project
            (01) has the accession number NZ_JSDS01000000, and consists of
            sequences JSDS01000001-JSDS01000008.
            Bacteria available from Probiogenomics Lab (Parma) bacteria
            collection.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Mira v. 4.0
            Assembly Name         :: Bbif02v4
            Genome Coverage       :: 51x
            Sequencing Technology :: Ion Torrent
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001020255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:28:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,893
            CDSs (total)                      :: 1,830
            Genes (coding)                    :: 1,755
            CDSs (with protein)               :: 1,755
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 26 of 75
            Pseudo Genes (incomplete)         :: 62 of 75
            Pseudo Genes (internal stop)      :: 3 of 75
            Pseudo Genes (multiple problems)  :: 15 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191816
                     /organism="Bifidobacterium bifidum"
                     /mol_type="genomic DNA"
                     /strain="156B"
                     /isolation_source="Infant stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1681"
WGS         JSDS01000001-JSDS01000008
WGS_SCAFLD  NZ_JSDS01000001-NZ_JSDS01000008
//
LOCUS       NZ_MIJP01000000      3284294 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis strain Br.m-1252/10-Geo, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MIJP00000000
VERSION     NZ_MIJP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05615423
            Assembly: GCF_001856295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis
  ORGANISM  Brucella melitensis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3284294)
  AUTHORS   Sidamonidze,K., Jun,H. and Nikolich,M.
  TITLE     Brucella melitensis genome assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3284294)
  AUTHORS   Sidamonidze,K., Jun,H. and Nikolich,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2016) Department of Virology, Molecular Biology
            and Genome Research, NCDC, 9 M.Asatiani, Tbilisi 0177, Georgia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MIJP00000000.1.
            The Brucella melitensis whole genome shotgun (WGS) project has the
            project accession NZ_MIJP00000000.  This version of the project
            (01) has the accession number NZ_MIJP01000000, and consists of
            sequences MIJP01000001-MIJP01000029.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Newbler v. 2015
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 54.4x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001856295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,219
            CDSs (total)                      :: 3,163
            Genes (coding)                    :: 3,001
            CDSs (with protein)               :: 3,001
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 109 of 162
            Pseudo Genes (incomplete)         :: 29 of 162
            Pseudo Genes (internal stop)      :: 44 of 162
            Pseudo Genes (multiple problems)  :: 18 of 162
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284294
                     /organism="Brucella melitensis"
                     /mol_type="genomic DNA"
                     /strain="Br.m-1252/10-Geo"
                     /isolation_source="milk"
                     /host="bovine"
                     /db_xref="taxon:29459"
                     /geo_loc_name="Georgia: Marneuli"
                     /collection_date="2010"
WGS         MIJP01000001-MIJP01000029
WGS_SCAFLD  NZ_MIJP01000001-NZ_MIJP01000029
//
LOCUS       NZ_AQNC01000000      3297832 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis 64/150, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AQNC00000000
VERSION     NZ_AQNC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00811206
            Assembly: GCF_000366845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis 64/150
  ORGANISM  Brucella melitensis 64/150
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3297832)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Brucella melitensis 64/150
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3297832)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQNC00000000.1.
            The Brucella melitensis 64/150 whole genome shotgun (WGS) project
            has the project accession NZ_AQNC00000000.  This version of the
            project (01) has the accession number NZ_AQNC01000000, and consists
            of sequences AQNC01000001-AQNC01000016.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R41689
            Assembly Name         :: Bruc_meli_64_150_V1
            Genome Coverage       :: 202.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000366845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,242
            CDSs (total)                      :: 3,179
            Genes (coding)                    :: 3,014
            CDSs (with protein)               :: 3,014
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 105 of 165
            Pseudo Genes (incomplete)         :: 36 of 165
            Pseudo Genes (internal stop)      :: 46 of 165
            Pseudo Genes (multiple problems)  :: 19 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3297832
                     /organism="Brucella melitensis 64/150"
                     /mol_type="genomic DNA"
                     /strain="64/150"
                     /db_xref="taxon:1160220"
                     /collection_date="1964"
WGS         AQNC01000001-AQNC01000016
WGS_SCAFLD  NZ_AQNC01000001-NZ_AQNC01000016
//
LOCUS       NZ_JXNJ01000000      2993625 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain FM88.90, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JXNJ00000000
VERSION     NZ_JXNJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03285451
            Assembly: GCF_001013165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 2993625)
  AUTHORS   Black,M., Moolhuijzen,P., Barrero,R., La,T., Phillips,N.,
            Hampson,D., Herbst,W., Barth,S. and Bellgard,M.
  TITLE     Analysis of Multiple Brachyspira hyodysenteriae Genomes Confirms
            That the Species Is Relatively Conserved but Has Potentially
            Important Strain Variation
  JOURNAL   PLoS One 10 (6), e0131050 (2015)
   PUBMED   26098837
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2993625)
  AUTHORS   Black,M.L., Moolhuijzen,P.M., Barrero,R., La,T., Phillips,N.D.,
            Hampson,D.J., Herbst,W., Barth,S. and Bellgard,M.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2015) Centre for Comparative Genomics, Murdoch
            University, South Street, Perth, WA 6150, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JXNJ00000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JXNJ00000000.  This version of the
            project (01) has the accession number NZ_JXNJ01000000, and consists
            of sequences JXNJ01000001-JXNJ01000118.
            Sample available from the Reference Centre for Intestinal
            Spirochetes at Murdoch University and from the collection at JLU
            Giessen.
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 29-NOV-2013
            Assembly Method        :: Velvet v. 1.2.08
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 124.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001013165.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:56:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,682
            CDSs (total)                      :: 2,642
            Genes (coding)                    :: 2,574
            CDSs (with protein)               :: 2,574
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 14 of 68
            Pseudo Genes (incomplete)         :: 44 of 68
            Pseudo Genes (internal stop)      :: 11 of 68
            Pseudo Genes (multiple problems)  :: 1 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2993625
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="FM88.90"
                     /host="Sus scrofa"
                     /db_xref="taxon:159"
                     /geo_loc_name="Canada"
WGS         JXNJ01000001-JXNJ01000118
WGS_SCAFLD  NZ_JXNJ01000001-NZ_JXNJ01000118
//
LOCUS       NZ_JXNI01000000      3002046 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain G44, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JXNI00000000
VERSION     NZ_JXNI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03285450
            Assembly: GCF_001013045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3002046)
  AUTHORS   Black,M., Moolhuijzen,P., Barrero,R., La,T., Phillips,N.,
            Hampson,D., Herbst,W., Barth,S. and Bellgard,M.
  TITLE     Analysis of Multiple Brachyspira hyodysenteriae Genomes Confirms
            That the Species Is Relatively Conserved but Has Potentially
            Important Strain Variation
  JOURNAL   PLoS One 10 (6), e0131050 (2015)
   PUBMED   26098837
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3002046)
  AUTHORS   Black,M.L., Moolhuijzen,P.M., Barrero,R., La,T., Phillips,N.D.,
            Hampson,D.J., Herbst,W., Barth,S. and Bellgard,M.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2015) Centre for Comparative Genomics, Murdoch
            University, South Street, Perth, WA 6150, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JXNI00000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JXNI00000000.  This version of the
            project (01) has the accession number NZ_JXNI01000000, and consists
            of sequences JXNI01000001-JXNI01000135.
            Sample available from the Reference Centre for Intestinal
            Spirochetes at Murdoch University and from the collection at JLU
            Giessen.
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 29-NOV-2013
            Assembly Method        :: Velvet v. 1.2.08
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 209.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001013045.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:48:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,728
            CDSs (total)                      :: 2,688
            Genes (coding)                    :: 2,611
            CDSs (with protein)               :: 2,611
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 8 of 77
            Pseudo Genes (incomplete)         :: 60 of 77
            Pseudo Genes (internal stop)      :: 10 of 77
            Pseudo Genes (multiple problems)  :: 1 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3002046
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="G44"
                     /host="Sus scrofa"
                     /db_xref="taxon:159"
                     /geo_loc_name="Germany"
WGS         JXNI01000001-JXNI01000135
WGS_SCAFLD  NZ_JXNI01000001-NZ_JXNI01000135
//
LOCUS       NZ_JXNC01000000      3011505 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain NX, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JXNC00000000
VERSION     NZ_JXNC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03283813
            Assembly: GCF_001012925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3011505)
  AUTHORS   Black,M., Moolhuijzen,P., Barrero,R., La,T., Phillips,N.,
            Hampson,D., Herbst,W., Barth,S. and Bellgard,M.
  TITLE     Analysis of Multiple Brachyspira hyodysenteriae Genomes Confirms
            That the Species Is Relatively Conserved but Has Potentially
            Important Strain Variation
  JOURNAL   PLoS One 10 (6), e0131050 (2015)
   PUBMED   26098837
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3011505)
  AUTHORS   Black,M.L., Moolhuijzen,P.M., Barrero,R., La,T., Phillips,N.D.,
            Hampson,D.J., Herbst,W., Barth,S. and Bellgard,M.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2015) Centre for Comparative Genomics, Murdoch
            University, South Street, Perth, WA 6150, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JXNC00000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JXNC00000000.  This version of the
            project (01) has the accession number NZ_JXNC01000000, and consists
            of sequences JXNC01000001-JXNC01000143.
            Sample available from the Reference Centre for Intestinal
            Spirochetes at Murdoch University and from the collection at JLU
            Giessen.
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 29-NOV-2013
            Assembly Method        :: Velvet v. 1.2.08
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 188.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001012925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:53:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,703
            CDSs (total)                      :: 2,663
            Genes (coding)                    :: 2,598
            CDSs (with protein)               :: 2,598
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 9 of 65
            Pseudo Genes (incomplete)         :: 50 of 65
            Pseudo Genes (internal stop)      :: 7 of 65
            Pseudo Genes (multiple problems)  :: 1 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011505
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="NX"
                     /host="Sus scrofa"
                     /db_xref="taxon:159"
WGS         JXNC01000001-JXNC01000143
WGS_SCAFLD  NZ_JXNC01000001-NZ_JXNC01000143
//
LOCUS       NZ_AQKD01000000      3299448 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis F8/01-155, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AQKD00000000
VERSION     NZ_AQKD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00811213
            Assembly: GCF_000370685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis F8/01-155
  ORGANISM  Brucella melitensis F8/01-155
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3299448)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Brucella melitensis F8/01-155
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3299448)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQKD00000000.1.
            The Brucella melitensis F8/01-155 whole genome shotgun (WGS)
            project has the project accession NZ_AQKD00000000.  This version of
            the project (01) has the accession number NZ_AQKD01000000, and
            consists of sequences AQKD01000001-AQKD01000012.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R41689
            Assembly Name         :: Bruc_meli_F8_01-155_V1
            Genome Coverage       :: 213.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000370685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:03:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,240
            CDSs (total)                      :: 3,177
            Genes (coding)                    :: 3,014
            CDSs (with protein)               :: 3,014
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 103 of 163
            Pseudo Genes (incomplete)         :: 34 of 163
            Pseudo Genes (internal stop)      :: 45 of 163
            Pseudo Genes (multiple problems)  :: 17 of 163
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299448
                     /organism="Brucella melitensis F8/01-155"
                     /mol_type="genomic DNA"
                     /strain="F8/01-155"
                     /host="Bovine"
                     /db_xref="taxon:1160225"
                     /geo_loc_name="Kosovo"
                     /collection_date="2001"
WGS         AQKD01000001-AQKD01000012
WGS_SCAFLD  NZ_KB850565-NZ_KB850575
//
LOCUS       NZ_ADOU02000000      9085533 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bradyrhizobium diazoefficiens SEMIA 5080, whole genome shotgun
            sequencing project.
ACCESSION   NZ_ADOU00000000
VERSION     NZ_ADOU00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02739028
            Assembly: GCF_000648595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bradyrhizobium diazoefficiens SEMIA 5080
  ORGANISM  Bradyrhizobium diazoefficiens SEMIA 5080
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Nitrobacteraceae; Bradyrhizobium.
REFERENCE   1  (bases 1 to 9085533)
  AUTHORS   Siqueira,A.F., Ormeno-Orrillo,E., Souza,R.C., Rodrigues,E.P.,
            Almeida,L.G., Barcellos,F.G., Batista,J.S., Nakatani,A.S.,
            Martinez-Romero,E., Vasconcelos,A.T. and Hungria,M.
  TITLE     Comparative genomics of Bradyrhizobium japonicum CPAC 15 and
            Bradyrhizobium diazoefficiens CPAC 7: elite model strains for
            understanding symbiotic performance with soybean
  JOURNAL   BMC Genomics 15 (1), 420 (2014)
   PUBMED   24888481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9085533)
  AUTHORS   Siqueira,A.F., Ormeno-Orrillo,E., Souza,R.C., Rodrigues,E.P.,
            Almeida,L.G., Barcellos,F.G., Batista,J.S., Nakatani,A.S.,
            Martinez-Romero,E., Vasconcelos,A.T. and Hungria,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2014) LNCC - Laboratorio Nacional de Computacao
            Cientifica, Rua Getulio Vargas 333, Petropolis, RJ 25651070, Brazil
REFERENCE   3  (bases 1 to 9085533)
  AUTHORS   Siqueira,A.F., Ormeno-Orrillo,E., Souza,R.C., Rodrigues,E.P.,
            Almeida,L.G.P., Barcellos,F.G., Batista,J.S.S., Nakatami,A.S.,
            Martinez-Romero,E., Vasconcelos,A.T.R. and Hungria,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAY-2010) Labinfo, LNCC - Laboratorio Nacional de
            Computacao Cientifica, Rua Getulio Vargas 333, Petropolis, RJ
            25651070, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADOU00000000.2.
            The Bradyrhizobium diazoefficiens SEMIA 5080 whole genome shotgun
            (WGS) project has the project accession NZ_ADOU00000000.  This
            version of the project (02) has the accession number
            NZ_ADOU02000000, and consists of sequences
            ADOU02000001-ADOU02000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Newbler v. 2.6
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000648595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8,550
            CDSs (total)                      :: 8,492
            Genes (coding)                    :: 8,238
            CDSs (with protein)               :: 8,238
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 254
            CDSs (without protein)            :: 254
            Pseudo Genes (ambiguous residues) :: 0 of 254
            Pseudo Genes (frameshifted)       :: 150 of 254
            Pseudo Genes (incomplete)         :: 163 of 254
            Pseudo Genes (internal stop)      :: 23 of 254
            Pseudo Genes (multiple problems)  :: 72 of 254
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9085533
                     /organism="Bradyrhizobium diazoefficiens SEMIA 5080"
                     /mol_type="genomic DNA"
                     /strain="SEMIA 5080"
                     /isolation_source="soybean"
                     /db_xref="taxon:754504"
                     /geo_loc_name="Brazil"
                     /note="strain coidentity: SEMIA 5080 = CPAC 7; WFCC
                     Collection # 1213"
WGS         ADOU02000001-ADOU02000013
WGS_SCAFLD  NZ_ADOU02000001-NZ_ADOU02000013
//
LOCUS       NZ_RZHY01000000      3260146 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis strain LMN17, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RZHY00000000
VERSION     NZ_RZHY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10640301
            Assembly: GCF_003989895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis
  ORGANISM  Brucella melitensis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3260146)
  AUTHORS   Sharma,N.S., Paviter,K., Mudit,C., Arora,A.K.,
            Sankarasubramanian,J., Vishnu,U.S., Sivakumar,R., Gunasekaran,P.
            and Rajendhran,J.
  TITLE     Whole genome sequence of Brucella melitensis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3260146)
  AUTHORS   Sharma,N.S., Paviter,K., Mudit,C., Arora,A.K.,
            Sankarasubramanian,J., Vishnu,U.S., Sivakumar,R., Gunasekaran,P.
            and Rajendhran,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2018) Department of Genetics, Madurai kamaraj
            university, School of Biological Sciences, Madurai, Tamil Nadu
            625021, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RZHY00000000.1.
            The Brucella melitensis whole genome shotgun (WGS) project has the
            project accession NZ_RZHY00000000.  This version of the project
            (01) has the accession number NZ_RZHY01000000, and consists of
            sequences RZHY01000001-RZHY01000030.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 881x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003989895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,204
            CDSs (total)                      :: 3,147
            Genes (coding)                    :: 2,987
            CDSs (with protein)               :: 2,987
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 102 of 160
            Pseudo Genes (incomplete)         :: 33 of 160
            Pseudo Genes (internal stop)      :: 44 of 160
            Pseudo Genes (multiple problems)  :: 17 of 160
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260146
                     /organism="Brucella melitensis"
                     /mol_type="genomic DNA"
                     /strain="LMN17"
                     /isolation_source="Foetal stomach content"
                     /host="Capra hircus"
                     /db_xref="taxon:29459"
                     /geo_loc_name="India: Punjab"
                     /lat_lon="31.14 N 75.34 E"
                     /collection_date="2018-02-02"
                     /collected_by="N. S. Sharma N. S"
WGS         RZHY01000001-RZHY01000030
WGS_SCAFLD  NZ_RZHY01000001-NZ_RZHY01000030
//
LOCUS       NZ_RZIA01000000      3261531 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis strain LMN19, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RZIA00000000
VERSION     NZ_RZIA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10640303
            Assembly: GCF_003989635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis
  ORGANISM  Brucella melitensis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3261531)
  AUTHORS   Sharma,N.S., Paviter,K., Mudit,C., Arora,A.K.,
            Sankarasubramanian,J., Vishnu,U.S., Sivakumar,R., Gunasekaran,P.
            and Rajendhran,J.
  TITLE     Whole genome sequence of Brucella melitensis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3261531)
  AUTHORS   Sharma,N.S., Paviter,K., Mudit,C., Arora,A.K.,
            Sankarasubramanian,J., Vishnu,U.S., Sivakumar,R., Gunasekaran,P.
            and Rajendhran,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2018) Department of Genetics, Madurai kamaraj
            university, School of Biological Sciences, Madurai, Tamil Nadu
            625021, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RZIA00000000.1.
            The Brucella melitensis whole genome shotgun (WGS) project has the
            project accession NZ_RZIA00000000.  This version of the project
            (01) has the accession number NZ_RZIA01000000, and consists of
            sequences RZIA01000001-RZIA01000031.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 745x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003989635.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:28:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,206
            CDSs (total)                      :: 3,147
            Genes (coding)                    :: 2,986
            CDSs (with protein)               :: 2,986
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 102 of 161
            Pseudo Genes (incomplete)         :: 34 of 161
            Pseudo Genes (internal stop)      :: 45 of 161
            Pseudo Genes (multiple problems)  :: 18 of 161
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261531
                     /organism="Brucella melitensis"
                     /mol_type="genomic DNA"
                     /strain="LMN19"
                     /isolation_source="Placental cotyledons"
                     /host="Capra hircus"
                     /db_xref="taxon:29459"
                     /geo_loc_name="India: Punjab"
                     /lat_lon="31.14 N 75.34 E"
                     /collection_date="2018-02-02"
                     /collected_by="N. S. Sharma N. S"
WGS         RZIA01000001-RZIA01000031
WGS_SCAFLD  NZ_RZIA01000001-NZ_RZIA01000031
//
LOCUS       NZ_RZHZ01000000      3260374 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis strain LMN18, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RZHZ00000000
VERSION     NZ_RZHZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10640302
            Assembly: GCF_003989885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis
  ORGANISM  Brucella melitensis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3260374)
  AUTHORS   Sharma,N.S., Paviter,K., Mudit,C., Arora,A.K.,
            Sankarasubramanian,J., Vishnu,U.S., Sivakumar,R., Gunasekaran,P.
            and Rajendhran,J.
  TITLE     Whole genome sequence of Brucella melitensis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3260374)
  AUTHORS   Sharma,N.S., Paviter,K., Mudit,C., Arora,A.K.,
            Sankarasubramanian,J., Vishnu,U.S., Sivakumar,R., Gunasekaran,P.
            and Rajendhran,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2018) Department of Genetics, Madurai kamaraj
            university, School of Biological Sciences, Madurai, Tamil Nadu
            625021, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RZHZ00000000.1.
            The Brucella melitensis whole genome shotgun (WGS) project has the
            project accession NZ_RZHZ00000000.  This version of the project
            (01) has the accession number NZ_RZHZ01000000, and consists of
            sequences RZHZ01000001-RZHZ01000031.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 527x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003989885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:39:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,203
            CDSs (total)                      :: 3,146
            Genes (coding)                    :: 2,985
            CDSs (with protein)               :: 2,985
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 104 of 161
            Pseudo Genes (incomplete)         :: 34 of 161
            Pseudo Genes (internal stop)      :: 45 of 161
            Pseudo Genes (multiple problems)  :: 19 of 161
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260374
                     /organism="Brucella melitensis"
                     /mol_type="genomic DNA"
                     /strain="LMN18"
                     /isolation_source="Foetal stomach content"
                     /host="Capra hircus"
                     /db_xref="taxon:29459"
                     /geo_loc_name="India: Punjab"
                     /lat_lon="31.14 N 75.34 E"
                     /collection_date="2018-02-02"
                     /collected_by="N. S. Sharma N. S"
WGS         RZHZ01000001-RZHZ01000031
WGS_SCAFLD  NZ_RZHZ01000001-NZ_RZHZ01000031
//
LOCUS       NZ_WDOW01000000      2171083 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium bifidum strain BIOML-A20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WDOW00000000
VERSION     NZ_WDOW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11944610
            Assembly: GCF_009159505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium bifidum
  ORGANISM  Bifidobacterium bifidum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2171083)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2171083)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WDOW00000000.1.
            The Bifidobacterium bifidum whole genome shotgun (WGS) project has
            the project accession NZ_WDOW00000000.  This version of the project
            (01) has the accession number NZ_WDOW01000000, and consists of
            sequences WDOW01000001-WDOW01000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81.75x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009159505.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:46:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,838
            CDSs (total)                      :: 1,780
            Genes (coding)                    :: 1,701
            CDSs (with protein)               :: 1,701
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 24 of 79
            Pseudo Genes (incomplete)         :: 65 of 79
            Pseudo Genes (internal stop)      :: 4 of 79
            Pseudo Genes (multiple problems)  :: 13 of 79
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171083
                     /organism="Bifidobacterium bifidum"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A20"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1681"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2015-12-09"
WGS         WDOW01000001-WDOW01000024
WGS_SCAFLD  NZ_WDOW01000001-NZ_WDOW01000024
//
LOCUS       NZ_WDOM01000000      2166279 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium bifidum strain BIOML-A10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WDOM00000000
VERSION     NZ_WDOM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11944600
            Assembly: GCF_009078115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium bifidum
  ORGANISM  Bifidobacterium bifidum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2166279)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2166279)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WDOM00000000.1.
            The Bifidobacterium bifidum whole genome shotgun (WGS) project has
            the project accession NZ_WDOM00000000.  This version of the project
            (01) has the accession number NZ_WDOM01000000, and consists of
            sequences WDOM01000001-WDOM01000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34.218x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009078115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:40:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,842
            CDSs (total)                      :: 1,784
            Genes (coding)                    :: 1,705
            CDSs (with protein)               :: 1,705
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 25 of 79
            Pseudo Genes (incomplete)         :: 65 of 79
            Pseudo Genes (internal stop)      :: 4 of 79
            Pseudo Genes (multiple problems)  :: 14 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166279
                     /organism="Bifidobacterium bifidum"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A10"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1681"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2015-12-09"
WGS         WDOM01000001-WDOM01000022
WGS_SCAFLD  NZ_WDOM01000001-NZ_WDOM01000022
//
LOCUS       NZ_WDOC01000000      1921684 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium animalis strain BIOML-A3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WDOC00000000
VERSION     NZ_WDOC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11944590
            Assembly: GCF_009075825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium animalis (Bifidobacterium lactis)
  ORGANISM  Bifidobacterium animalis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 1921684)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 1921684)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WDOC00000000.1.
            The Bifidobacterium animalis whole genome shotgun (WGS) project has
            the project accession NZ_WDOC00000000.  This version of the project
            (01) has the accession number NZ_WDOC01000000, and consists of
            sequences WDOC01000001-WDOC01000014.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 161.517x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009075825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:42:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,615
            CDSs (total)                      :: 1,557
            Genes (coding)                    :: 1,539
            CDSs (with protein)               :: 1,539
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 5 of 18
            Pseudo Genes (incomplete)         :: 13 of 18
            Pseudo Genes (internal stop)      :: 1 of 18
            Pseudo Genes (multiple problems)  :: 1 of 18
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921684
                     /organism="Bifidobacterium animalis"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A3"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:28025"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2015-12-09"
WGS         WDOC01000001-WDOC01000014
WGS_SCAFLD  NZ_WDOC01000001-NZ_WDOC01000014
//
LOCUS       NZ_WDON01000000      2168114 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium bifidum strain BIOML-A11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WDON00000000
VERSION     NZ_WDON00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11944601
            Assembly: GCF_009078055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium bifidum
  ORGANISM  Bifidobacterium bifidum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2168114)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2168114)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WDON00000000.1.
            The Bifidobacterium bifidum whole genome shotgun (WGS) project has
            the project accession NZ_WDON00000000.  This version of the project
            (01) has the accession number NZ_WDON01000000, and consists of
            sequences WDON01000001-WDON01000021.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 59.925x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009078055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:43:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,833
            CDSs (total)                      :: 1,775
            Genes (coding)                    :: 1,698
            CDSs (with protein)               :: 1,698
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 24 of 77
            Pseudo Genes (incomplete)         :: 63 of 77
            Pseudo Genes (internal stop)      :: 4 of 77
            Pseudo Genes (multiple problems)  :: 13 of 77
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168114
                     /organism="Bifidobacterium bifidum"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A11"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1681"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2015-12-09"
WGS         WDON01000001-WDON01000021
WGS_SCAFLD  NZ_WDON01000001-NZ_WDON01000021
//
LOCUS       NZ_WDOQ01000000      2167750 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium bifidum strain BIOML-A14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WDOQ00000000
VERSION     NZ_WDOQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11944604
            Assembly: GCF_009160885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium bifidum
  ORGANISM  Bifidobacterium bifidum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2167750)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2167750)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WDOQ00000000.1.
            The Bifidobacterium bifidum whole genome shotgun (WGS) project has
            the project accession NZ_WDOQ00000000.  This version of the project
            (01) has the accession number NZ_WDOQ01000000, and consists of
            sequences WDOQ01000001-WDOQ01000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 176.609x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009160885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:51:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,832
            CDSs (total)                      :: 1,774
            Genes (coding)                    :: 1,696
            CDSs (with protein)               :: 1,696
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 25 of 78
            Pseudo Genes (incomplete)         :: 63 of 78
            Pseudo Genes (internal stop)      :: 4 of 78
            Pseudo Genes (multiple problems)  :: 13 of 78
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2167750
                     /organism="Bifidobacterium bifidum"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A14"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1681"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2015-12-09"
WGS         WDOQ01000001-WDOQ01000018
WGS_SCAFLD  NZ_WDOQ01000001-NZ_WDOQ01000018
//
LOCUS       NZ_JALLPN010000000   1332794 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Borreliella burgdorferi strain PMeh, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALLPN000000000
VERSION     NZ_JALLPN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27611594
            Assembly: GCF_024790485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Borreliella burgdorferi (Borrelia burgdorferi)
  ORGANISM  Borreliella burgdorferi
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Spirochaetales; Borreliaceae; Borreliella.
REFERENCE   1  (bases 1 to 1332794)
  AUTHORS   Combs,M., Marcinkiewicz,A.L., Dupuis,A.P. 2nd, Davis,A.D.,
            Lederman,P., Nowak,T.A., Stout,J.L., Strle,K., Fingerle,V.,
            Margos,G., Ciota,A.T., Diuk-Wasser,M.A., Kolokotronis,S.O. and
            Lin,Y.P.
  TITLE     Phylogenomic Diversity Elucidates Mechanistic Insights into Lyme
            Borreliae-Host Association
  JOURNAL   mSystems 7 (4), e0048822 (2022)
   PUBMED   35938719
REFERENCE   2  (bases 1 to 1332794)
  AUTHORS   Combs,M.A., Lin,Y.-P. and Margos,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2022) Ecology, Evolution and Environmental
            Biology, Columbia University, 1200 Amsterdam Ave, New York, NY
            10027, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLPN000000000.1.
            The Borreliella burgdorferi whole genome shotgun (WGS) project has
            the project accession NZ_JALLPN000000000.  This version of the
            project (01) has the accession number NZ_JALLPN010000000, and
            consists of sequences JALLPN010000001-JALLPN010000139.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-OCT-2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 88.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024790485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:13:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,441
            CDSs (total)                      :: 1,393
            Genes (coding)                    :: 1,330
            CDSs (with protein)               :: 1,330
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 10 (5S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 28 of 63
            Pseudo Genes (incomplete)         :: 50 of 63
            Pseudo Genes (internal stop)      :: 11 of 63
            Pseudo Genes (multiple problems)  :: 20 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1332794
                     /organism="Borreliella burgdorferi"
                     /mol_type="genomic DNA"
                     /strain="PMeh"
                     /host="Homo sapiens"
                     /db_xref="taxon:139"
                     /geo_loc_name="Germany"
                     /collection_date="1996-09-16"
                     /collected_by="German National Reference Centre for
                     Borrelia"
WGS         JALLPN010000001-JALLPN010000139
WGS_SCAFLD  NZ_JALLPN010000001-NZ_JALLPN010000139
//
LOCUS       NZ_JAOVVU010000000   3189540 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_294, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVVU000000000
VERSION     NZ_JAOVVU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207227
            Assembly: GCF_027585485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3189540)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3189540)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVVU000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVVU000000000.  This version of the
            project (01) has the accession number NZ_JAOVVU010000000, and
            consists of sequences JAOVVU010000001-JAOVVU010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 97x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:22:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,907
            CDSs (total)                      :: 2,867
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 64 of 78
            Pseudo Genes (incomplete)         :: 9 of 78
            Pseudo Genes (internal stop)      :: 9 of 78
            Pseudo Genes (multiple problems)  :: 4 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3189540
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_294"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-01-23"
WGS         JAOVVU010000001-JAOVVU010000013
WGS_SCAFLD  NZ_JAOVVU010000001-NZ_JAOVVU010000013
//
LOCUS       NZ_JALGSO010000000   1365365 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Borreliella burgdorferi strain N40-D10/E9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGSO000000000
VERSION     NZ_JALGSO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27057510
            Assembly: GCF_024733895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Borreliella burgdorferi (Borrelia burgdorferi)
  ORGANISM  Borreliella burgdorferi
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Spirochaetales; Borreliaceae; Borreliella.
REFERENCE   1  (bases 1 to 1365365)
  AUTHORS   Combs,M., Marcinkiewicz,A.L., Dupuis,A.P. 2nd, Davis,A.D.,
            Lederman,P., Nowak,T.A., Stout,J.L., Strle,K., Fingerle,V.,
            Margos,G., Ciota,A.T., Diuk-Wasser,M.A., Kolokotronis,S.O. and
            Lin,Y.P.
  TITLE     Phylogenomic Diversity Elucidates Mechanistic Insights into Lyme
            Borreliae-Host Association
  JOURNAL   mSystems 7 (4), e0048822 (2022)
   PUBMED   35938719
REFERENCE   2  (bases 1 to 1365365)
  AUTHORS   Combs,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2022) Ecology, Evolution and Environmental
            Biology, Columbia University, 1200 Amsterdam Ave, New York, NY
            10027, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGSO000000000.1.
            The Borreliella burgdorferi whole genome shotgun (WGS) project has
            the project accession NZ_JALGSO000000000.  This version of the
            project (01) has the accession number NZ_JALGSO010000000, and
            consists of sequences JALGSO010000001-JALGSO010000129.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 08-SEP-2021
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 129x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024733895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:14:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,469
            CDSs (total)                      :: 1,429
            Genes (coding)                    :: 1,348
            CDSs (with protein)               :: 1,348
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 20 of 81
            Pseudo Genes (incomplete)         :: 62 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 12 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365365
                     /organism="Borreliella burgdorferi"
                     /mol_type="genomic DNA"
                     /strain="N40-D10/E9"
                     /isolation_source="nymph"
                     /host="wild tick"
                     /db_xref="taxon:139"
                     /geo_loc_name="USA: New York"
                     /collection_date="1994"
WGS         JALGSO010000001-JALGSO010000129
WGS_SCAFLD  NZ_JALGSO010000001-NZ_JALGSO010000129
//
LOCUS       NZ_JAOVWS010000000   3023005 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_267, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVWS000000000
VERSION     NZ_JAOVWS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207203
            Assembly: GCF_027585965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3023005)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3023005)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVWS000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVWS000000000.  This version of the
            project (01) has the accession number NZ_JAOVWS010000000, and
            consists of sequences JAOVWS010000001-JAOVWS010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 226x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:23:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,716
            CDSs (total)                      :: 2,676
            Genes (coding)                    :: 2,603
            CDSs (with protein)               :: 2,603
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 68 of 73
            Pseudo Genes (incomplete)         :: 6 of 73
            Pseudo Genes (internal stop)      :: 1 of 73
            Pseudo Genes (multiple problems)  :: 2 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023005
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_267"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2019-08-13"
WGS         JAOVWS010000001-JAOVWS010000002
WGS_SCAFLD  NZ_JAOVWS010000001-NZ_JAOVWS010000002
//
LOCUS       NZ_JBWXNH010000000   5583748 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus paranthracis isolate BH-4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWXNH000000000
VERSION     NZ_JBWXNH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN53689802
            Assembly: GCF_056776625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus paranthracis
  ORGANISM  Bacillus paranthracis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5583748)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2025) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWXNH000000000.1.
            The Bacillus paranthracis whole genome shotgun (WGS) project has
            the project accession NZ_JBWXNH000000000.  This version of the
            project (01) has the accession number NZ_JBWXNH010000000, and
            consists of sequences JBWXNH010000001-JBWXNH010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056776625.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:31:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,782
            CDSs (total)                      :: 5,627
            Genes (coding)                    :: 5,423
            CDSs (with protein)               :: 5,423
            Genes (RNA)                       :: 155
            rRNAs                             :: 15, 15, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 15, 15, 15 (5S, 16S, 23S)
            tRNAs                             :: 105
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 204
            CDSs (without protein)            :: 204
            Pseudo Genes (ambiguous residues) :: 0 of 204
            Pseudo Genes (frameshifted)       :: 76 of 204
            Pseudo Genes (incomplete)         :: 138 of 204
            Pseudo Genes (internal stop)      :: 32 of 204
            Pseudo Genes (multiple problems)  :: 35 of 204
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5583748
                     /organism="Bacillus paranthracis"
                     /mol_type="genomic DNA"
                     /isolate="BH-4"
                     /isolation_source="food: bechamel sauce"
                     /db_xref="taxon:2026186"
                     /geo_loc_name="Switzerland: Basel"
                     /collection_date="2025"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JBWXNH010000001-JBWXNH010000006
WGS_SCAFLD  NZ_CM165339
WGS_SCAFLD  NZ_JBWXNH010000002-NZ_JBWXNH010000006
//
LOCUS       NZ_JAOVXB010000000   3049273 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_258, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVXB000000000
VERSION     NZ_JAOVXB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207194
            Assembly: GCF_027586115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3049273)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3049273)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVXB000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVXB000000000.  This version of the
            project (01) has the accession number NZ_JAOVXB010000000, and
            consists of sequences JAOVXB010000001-JAOVXB010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 271x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027586115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:26:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,724
            CDSs (total)                      :: 2,684
            Genes (coding)                    :: 2,600
            CDSs (with protein)               :: 2,600
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 77 of 84
            Pseudo Genes (incomplete)         :: 6 of 84
            Pseudo Genes (internal stop)      :: 4 of 84
            Pseudo Genes (multiple problems)  :: 3 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3049273
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_258"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2019-05-03"
WGS         JAOVXB010000001-JAOVXB010000002
WGS_SCAFLD  NZ_JAOVXB010000001-NZ_JAOVXB010000002
//
LOCUS       NZ_JAOVWL010000000   3058552 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_276, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVWL000000000
VERSION     NZ_JAOVWL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207210
            Assembly: GCF_027585815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3058552)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3058552)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVWL000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVWL000000000.  This version of the
            project (01) has the accession number NZ_JAOVWL010000000, and
            consists of sequences JAOVWL010000001-JAOVWL010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 378x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585815.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:23:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,753
            CDSs (total)                      :: 2,713
            Genes (coding)                    :: 2,632
            CDSs (with protein)               :: 2,632
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 74 of 81
            Pseudo Genes (incomplete)         :: 8 of 81
            Pseudo Genes (internal stop)      :: 2 of 81
            Pseudo Genes (multiple problems)  :: 3 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058552
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_276"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-03-10"
WGS         JAOVWL010000001-JAOVWL010000003
WGS_SCAFLD  NZ_JAOVWL010000001-NZ_JAOVWL010000003
//
LOCUS       NZ_JAOVYL010000000   3046110 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_209, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVYL000000000
VERSION     NZ_JAOVYL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207157
            Assembly: GCF_027586815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3046110)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3046110)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVYL000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVYL000000000.  This version of the
            project (01) has the accession number NZ_JAOVYL010000000, and
            consists of sequences JAOVYL010000001-JAOVYL010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 143x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027586815.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:24:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,734
            CDSs (total)                      :: 2,694
            Genes (coding)                    :: 2,611
            CDSs (with protein)               :: 2,611
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 73 of 83
            Pseudo Genes (incomplete)         :: 7 of 83
            Pseudo Genes (internal stop)      :: 3 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046110
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_209"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2019-02-09"
WGS         JAOVYL010000001-JAOVYL010000003
WGS_SCAFLD  NZ_JAOVYL010000001-NZ_JAOVYL010000003
//
LOCUS       NZ_JAOVVV010000000   3030214 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_293, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVVV000000000
VERSION     NZ_JAOVVV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207226
            Assembly: GCF_027585445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3030214)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3030214)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVVV000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVVV000000000.  This version of the
            project (01) has the accession number NZ_JAOVVV010000000, and
            consists of sequences JAOVVV010000001-JAOVVV010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 283x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:25:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,739
            CDSs (total)                      :: 2,699
            Genes (coding)                    :: 2,601
            CDSs (with protein)               :: 2,601
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 93 of 98
            Pseudo Genes (incomplete)         :: 7 of 98
            Pseudo Genes (internal stop)      :: 3 of 98
            Pseudo Genes (multiple problems)  :: 5 of 98
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030214
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_293"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-02-17"
WGS         JAOVVV010000001-JAOVVV010000002
WGS_SCAFLD  NZ_JAOVVV010000001-NZ_JAOVVV010000002
//
LOCUS       NZ_JBWYHC010000000   4142054 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus stercoris strain Medicinal_01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWYHC000000000
VERSION     NZ_JBWYHC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN49909476
            Assembly: GCF_056777085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus stercoris
  ORGANISM  Bacillus stercoris
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4142054)
  AUTHORS   Faisal,M., Hameed,A., Khan,M.A., Hameed,A., Ain,M.U., Afzal,A.,
            Anwar,W. and Gechev,T.
  TITLE     Genome assembly of Bacillus subtilis strain_medicinal plants
            rhizospheres
  JOURNAL   Sci Rep (2025) In press
REFERENCE   2  (bases 1 to 4142054)
  AUTHORS   Faisal,M., Shafiq,M., Faisal,M., Sabri,A.N., Israr,A., Amjad,M. and
            Hameed,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2025) Biotechnology, IPBB, MNS-University of
            Agriculture, Old Shujabad road, Multan, Punjab 60000, Pakistan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWYHC000000000.1.
            The Bacillus stercoris whole genome shotgun (WGS) project has the
            project accession NZ_JBWYHC000000000.  This version of the project
            (01) has the accession number NZ_JBWYHC010000000, and consists of
            sequences JBWYHC010000001-JBWYHC010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Faisal, Muhamad, IPBB,
            MNS-University of Agriculture, Multan, Pakistan.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 23-MAY-2023
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 137.3x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056777085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:48:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,304
            CDSs (total)                      :: 4,187
            Genes (coding)                    :: 4,047
            CDSs (with protein)               :: 4,047
            Genes (RNA)                       :: 117
            rRNAs                             :: 13, 8, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 7, 3 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 94 of 140
            Pseudo Genes (incomplete)         :: 73 of 140
            Pseudo Genes (internal stop)      :: 16 of 140
            Pseudo Genes (multiple problems)  :: 38 of 140
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4142054
                     /organism="Bacillus stercoris"
                     /mol_type="genomic DNA"
                     /strain="Medicinal_01"
                     /isolation_source="soil rhizosphere"
                     /host="Medicinal plants"
                     /db_xref="taxon:2054641"
                     /geo_loc_name="Pakistan: Lahore"
                     /collection_date="2023-08-01"
WGS         JBWYHC010000001-JBWYHC010000044
WGS_SCAFLD  NZ_JBWYHC010000001-NZ_JBWYHC010000044
//
LOCUS       NZ_JAOVVX010000000   3227621 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_291, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVVX000000000
VERSION     NZ_JAOVVX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207224
            Assembly: GCF_027585515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3227621)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3227621)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVVX000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVVX000000000.  This version of the
            project (01) has the accession number NZ_JAOVVX010000000, and
            consists of sequences JAOVVX010000001-JAOVVX010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 200x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:25:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,970
            CDSs (total)                      :: 2,929
            Genes (coding)                    :: 2,885
            CDSs (with protein)               :: 2,885
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 33 of 44
            Pseudo Genes (incomplete)         :: 9 of 44
            Pseudo Genes (internal stop)      :: 6 of 44
            Pseudo Genes (multiple problems)  :: 4 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3227621
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_291"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-01-31"
WGS         JAOVVX010000001-JAOVVX010000009
WGS_SCAFLD  NZ_JAOVVX010000001-NZ_JAOVVX010000009
//
LOCUS       NZ_JBWPVG010000000   5777022 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus sp. B1, whole genome shotgun sequencing project.
ACCESSION   NZ_JBWPVG000000000
VERSION     NZ_JBWPVG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56718554
            Assembly: GCF_056770595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus sp. B1
  ORGANISM  Bacillus sp. B1
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 5777022)
  AUTHORS   Ding,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2026) School of Life Sciences, Nanyang Normal
            University, No. 1638, Wolong Road, Wolong Subdistrict, Nanyang
            City, Henan Province 473061, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWPVG000000000.1.
            The Bacillus sp. B1 whole genome shotgun (WGS) project has the
            project accession NZ_JBWPVG000000000.  This version of the project
            (01) has the accession number NZ_JBWPVG010000000, and consists of
            sequences JBWPVG010000001-JBWPVG010000037.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Hao Zhang, Nanyang Normal
            University, zhanghao660@nynu.edu.cn.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2025
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056770595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:17:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,898
            CDSs (total)                      :: 5,786
            Genes (coding)                    :: 5,561
            CDSs (with protein)               :: 5,561
            Genes (RNA)                       :: 112
            rRNAs                             :: 9, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 6, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 225
            CDSs (without protein)            :: 225
            Pseudo Genes (ambiguous residues) :: 0 of 225
            Pseudo Genes (frameshifted)       :: 91 of 225
            Pseudo Genes (incomplete)         :: 161 of 225
            Pseudo Genes (internal stop)      :: 62 of 225
            Pseudo Genes (multiple problems)  :: 66 of 225
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5777022
                     /organism="Bacillus sp. B1"
                     /mol_type="genomic DNA"
                     /strain="B1"
                     /isolation_source="soil"
                     /db_xref="taxon:203352"
                     /geo_loc_name="China: Henan"
                     /collection_date="2025-06"
WGS         JBWPVG010000001-JBWPVG010000037
WGS_SCAFLD  NZ_JBWPVG010000001-NZ_JBWPVG010000037
//
LOCUS       NZ_JAOVXZ010000000   3036735 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_226, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVXZ000000000
VERSION     NZ_JAOVXZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207170
            Assembly: GCF_027586595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3036735)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3036735)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVXZ000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVXZ000000000.  This version of the
            project (01) has the accession number NZ_JAOVXZ010000000, and
            consists of sequences JAOVXZ010000001-JAOVXZ010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 469x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027586595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:26:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,747
            CDSs (total)                      :: 2,707
            Genes (coding)                    :: 2,623
            CDSs (with protein)               :: 2,623
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 77 of 84
            Pseudo Genes (incomplete)         :: 6 of 84
            Pseudo Genes (internal stop)      :: 2 of 84
            Pseudo Genes (multiple problems)  :: 1 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3036735
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_226"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2019-05-04"
WGS         JAOVXZ010000001-JAOVXZ010000002
WGS_SCAFLD  NZ_JAOVXZ010000001-NZ_JAOVXZ010000002
//
LOCUS       NZ_JAOVWI010000000   3220684 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_279, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVWI000000000
VERSION     NZ_JAOVWI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207213
            Assembly: GCF_027585735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3220684)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3220684)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVWI000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVWI000000000.  This version of the
            project (01) has the accession number NZ_JAOVWI010000000, and
            consists of sequences JAOVWI010000001-JAOVWI010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 149x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585735.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:28:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,926
            CDSs (total)                      :: 2,886
            Genes (coding)                    :: 2,806
            CDSs (with protein)               :: 2,806
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 64 of 80
            Pseudo Genes (incomplete)         :: 13 of 80
            Pseudo Genes (internal stop)      :: 8 of 80
            Pseudo Genes (multiple problems)  :: 5 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3220684
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_279"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-01-24"
WGS         JAOVWI010000001-JAOVWI010000013
WGS_SCAFLD  NZ_JAOVWI010000001-NZ_JAOVWI010000013
//
LOCUS       NZ_JBUBGW010000000   3621484 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus safensis strain Smederevska_Palanka_Field_soil_A4, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JBUBGW000000000
VERSION     NZ_JBUBGW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54765072
            Assembly: GCF_056777025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus safensis
  ORGANISM  Bacillus safensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 3621484)
  AUTHORS   Giannakara,M., Jankovic,V., Milovanovic,J., Pantelic,B.,
            Filandrou,G.N., Koumandou,V.L. and Nikodinovic-Runic,J.
  TITLE     Isolation and identification of novel glyphosate-degrading bacteria
            from soil samples in Serbia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3621484)
  AUTHORS   Pantelic,B. and Giannakara,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2026) Department of Biotechnology, Agricultural
            University of Athens, Iera Odos 75, Athens 11855, Greece
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBUBGW000000000.1.
            The Bacillus safensis whole genome shotgun (WGS) project has the
            project accession NZ_JBUBGW000000000.  This version of the project
            (01) has the accession number NZ_JBUBGW010000000, and consists of
            sequences JBUBGW010000001-JBUBGW010000021.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 491.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056777025.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:49:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,708
            CDSs (total)                      :: 3,644
            Genes (coding)                    :: 3,609
            CDSs (with protein)               :: 3,609
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 14 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 8 of 35
            Pseudo Genes (multiple problems)  :: 7 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621484
                     /organism="Bacillus safensis"
                     /mol_type="genomic DNA"
                     /strain="Smederevska_Palanka_Field_soil_A4"
                     /isolation_source="soil treated with glyphosate, other
                     pesticides, fungicides, insecticides, water-soluble
                     fertilizers"
                     /db_xref="taxon:561879"
                     /geo_loc_name="Serbia: Smederevska Palanka"
                     /lat_lon="44.348480 N 20.961999 E"
                     /collection_date="2024-04"
WGS         JBUBGW010000001-JBUBGW010000021
WGS_SCAFLD  NZ_JBUBGW010000001-NZ_JBUBGW010000021
//
LOCUS       NZ_JBWXNI010000000   5492134 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus paranthracis isolate BH-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWXNI000000000
VERSION     NZ_JBWXNI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN53689801
            Assembly: GCF_056776665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus paranthracis
  ORGANISM  Bacillus paranthracis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5492134)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2025) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWXNI000000000.1.
            The Bacillus paranthracis whole genome shotgun (WGS) project has
            the project accession NZ_JBWXNI000000000.  This version of the
            project (01) has the accession number NZ_JBWXNI010000000, and
            consists of sequences JBWXNI010000001-JBWXNI010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056776665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:28:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,652
            CDSs (total)                      :: 5,501
            Genes (coding)                    :: 5,296
            CDSs (with protein)               :: 5,296
            Genes (RNA)                       :: 151
            rRNAs                             :: 14, 14, 14 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 14, 14 (5S, 16S, 23S)
            tRNAs                             :: 104
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 72 of 205
            Pseudo Genes (incomplete)         :: 134 of 205
            Pseudo Genes (internal stop)      :: 35 of 205
            Pseudo Genes (multiple problems)  :: 34 of 205
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5492134
                     /organism="Bacillus paranthracis"
                     /mol_type="genomic DNA"
                     /isolate="BH-2"
                     /isolation_source="food: bechamel sauce"
                     /db_xref="taxon:2026186"
                     /geo_loc_name="Switzerland: Basel"
                     /collection_date="2025"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JBWXNI010000001-JBWXNI010000004
WGS_SCAFLD  NZ_CM165340
WGS_SCAFLD  NZ_JBWXNI010000002-NZ_JBWXNI010000004
//
LOCUS       NZ_JAOVXP010000000   3079081 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_241, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVXP000000000
VERSION     NZ_JAOVXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207180
            Assembly: GCF_027586415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3079081)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3079081)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVXP000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVXP000000000.  This version of the
            project (01) has the accession number NZ_JAOVXP010000000, and
            consists of sequences JAOVXP010000001-JAOVXP010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 238x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027586415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:27:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,752
            CDSs (total)                      :: 2,712
            Genes (coding)                    :: 2,644
            CDSs (with protein)               :: 2,644
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 61 of 68
            Pseudo Genes (incomplete)         :: 4 of 68
            Pseudo Genes (internal stop)      :: 5 of 68
            Pseudo Genes (multiple problems)  :: 2 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079081
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_241"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2019-04-05"
WGS         JAOVXP010000001-JAOVXP010000002
WGS_SCAFLD  NZ_JAOVXP010000001-NZ_JAOVXP010000002
//
LOCUS       NZ_JBWXNK010000000   6090517 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus proteolyticus isolate BH-11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWXNK000000000
VERSION     NZ_JBWXNK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN53689804
            Assembly: GCF_056776715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus proteolyticus
  ORGANISM  Bacillus proteolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6090517)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-DEC-2025) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWXNK000000000.1.
            The Bacillus proteolyticus whole genome shotgun (WGS) project has
            the project accession NZ_JBWXNK000000000.  This version of the
            project (01) has the accession number NZ_JBWXNK010000000, and
            consists of sequences JBWXNK010000001-JBWXNK010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056776715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 03:25:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,413
            CDSs (total)                      :: 6,260
            Genes (coding)                    :: 5,896
            CDSs (with protein)               :: 5,896
            Genes (RNA)                       :: 153
            rRNAs                             :: 14, 14, 14 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 14, 14 (5S, 16S, 23S)
            tRNAs                             :: 106
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 364
            CDSs (without protein)            :: 364
            Pseudo Genes (ambiguous residues) :: 0 of 364
            Pseudo Genes (frameshifted)       :: 143 of 364
            Pseudo Genes (incomplete)         :: 233 of 364
            Pseudo Genes (internal stop)      :: 96 of 364
            Pseudo Genes (multiple problems)  :: 95 of 364
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6090517
                     /organism="Bacillus proteolyticus"
                     /mol_type="genomic DNA"
                     /isolate="BH-11"
                     /isolation_source="food: bechamel sauce"
                     /db_xref="taxon:2026192"
                     /geo_loc_name="Switzerland: Basel"
                     /collection_date="2025"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JBWXNK010000001-JBWXNK010000008
WGS_SCAFLD  NZ_CM165341
WGS_SCAFLD  NZ_JBWXNK010000002-NZ_JBWXNK010000008
//
LOCUS       NZ_JAOVVQ010000000   3196375 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_299, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVVQ000000000
VERSION     NZ_JAOVVQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207231
            Assembly: GCF_027585345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3196375)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3196375)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVVQ000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVVQ000000000.  This version of the
            project (01) has the accession number NZ_JAOVVQ010000000, and
            consists of sequences JAOVVQ010000001-JAOVVQ010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 67x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:23:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,909
            CDSs (total)                      :: 2,869
            Genes (coding)                    :: 2,790
            CDSs (with protein)               :: 2,790
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 63 of 79
            Pseudo Genes (incomplete)         :: 14 of 79
            Pseudo Genes (internal stop)      :: 7 of 79
            Pseudo Genes (multiple problems)  :: 5 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3196375
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_299"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-03-10"
WGS         JAOVVQ010000001-JAOVVQ010000013
WGS_SCAFLD  NZ_JAOVVQ010000001-NZ_JAOVVQ010000013
//
LOCUS       NZ_LBMN02000000      4520658 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus paralicheniformis strain KJ-16, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LBMN00000000
VERSION     NZ_LBMN00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03573918
            Assembly: GCF_001042485.2
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus paralicheniformis
  ORGANISM  Bacillus paralicheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4520658)
  AUTHORS   Dunlap,C.A., Kwon,S.W., Rooney,A.P. and Kim,S.J.
  TITLE     Bacillus paralicheniformis sp. nov., isolated from fermented
            soybean paste
  JOURNAL   Int J Syst Evol Microbiol 65 (10), 3487-3492 (2015)
   PUBMED   26296568
REFERENCE   2  (bases 1 to 4520658)
  AUTHORS   Dunlap,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2015) Crop Bioprotection Research Unit,
            NCAUR-ARS-USDA, 1815 N. University St., Peoria, IL 61604, USA
REFERENCE   3  (bases 1 to 4520658)
  AUTHORS   Dunlap,C., Kim,S.-J., Kwon,S.-W. and Rooney,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2015) Crop Bioprotection Research Unit,
            NCAUR-ARS-USDA, 1815 N. University St., Peoria, IL 61604, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LBMN00000000.2.
            
            On Nov 17, 2015 this sequence version replaced NZ_LBMN00000000.1.
            The Bacillus paralicheniformis whole genome shotgun (WGS) project
            has the project accession NZ_LBMN00000000.  This version of the
            project (02) has the accession number NZ_LBMN02000000, and consists
            of sequences LBMN02000001-LBMN02000039.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 42.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001042485.2-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:42:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,673
            CDSs (total)                      :: 4,582
            Genes (coding)                    :: 4,466
            CDSs (with protein)               :: 4,466
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 77
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 56 of 116
            Pseudo Genes (incomplete)         :: 74 of 116
            Pseudo Genes (internal stop)      :: 18 of 116
            Pseudo Genes (multiple problems)  :: 27 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4520658
                     /organism="Bacillus paralicheniformis"
                     /mol_type="genomic DNA"
                     /strain="KJ-16"
                     /isolation_source="soybean fermentation"
                     /type_material="type strain of Bacillus paralicheniformis"
                     /db_xref="taxon:1648923"
                     /geo_loc_name="South Korea: Cheongwon"
                     /collection_date="2013-01-01"
WGS         LBMN02000001-LBMN02000039
WGS_SCAFLD  NZ_LBMN02000001-NZ_LBMN02000039
//
LOCUS       NZ_JAOVWU010000000   3013192 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_265, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVWU000000000
VERSION     NZ_JAOVWU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207201
            Assembly: GCF_027585935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3013192)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3013192)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVWU000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVWU000000000.  This version of the
            project (01) has the accession number NZ_JAOVWU010000000, and
            consists of sequences JAOVWU010000001-JAOVWU010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 480x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:27:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,689
            CDSs (total)                      :: 2,649
            Genes (coding)                    :: 2,565
            CDSs (with protein)               :: 2,565
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 77 of 84
            Pseudo Genes (incomplete)         :: 8 of 84
            Pseudo Genes (internal stop)      :: 4 of 84
            Pseudo Genes (multiple problems)  :: 5 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013192
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_265"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2019-09-20"
WGS         JAOVWU010000001-JAOVWU010000002
WGS_SCAFLD  NZ_JAOVWU010000001-NZ_JAOVWU010000002
//
LOCUS       NZ_JAOVVP010000000   3159660 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_300, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVVP000000000
VERSION     NZ_JAOVVP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207232
            Assembly: GCF_027585435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3159660)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3159660)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVVP000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVVP000000000.  This version of the
            project (01) has the accession number NZ_JAOVVP010000000, and
            consists of sequences JAOVVP010000001-JAOVVP010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 44x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:25:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,875
            CDSs (total)                      :: 2,835
            Genes (coding)                    :: 2,760
            CDSs (with protein)               :: 2,760
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 61 of 75
            Pseudo Genes (incomplete)         :: 13 of 75
            Pseudo Genes (internal stop)      :: 7 of 75
            Pseudo Genes (multiple problems)  :: 6 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159660
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_300"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-01-24"
WGS         JAOVVP010000001-JAOVVP010000012
WGS_SCAFLD  NZ_JAOVVP010000001-NZ_JAOVVP010000012
//
LOCUS       NZ_NPCR01000000      4255506 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain 7709, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NPCR00000000
VERSION     NZ_NPCR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07372720
            Assembly: GCF_002272395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4255506)
  AUTHORS   Kalinowski,J., Ahrens,B., Al-Dilaimi,A., Winkler,A., Wibberg,D.,
            Schleenbecker,U., Ruckert,C., Wolfel,R. and Grass,G.
  TITLE     Isolation and whole genome analysis of endospore-forming bacteria
            from heroin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4255506)
  AUTHORS   Kalinowski,J., Ahrens,B., Al-Dilaimi,A., Winkler,A., Wibberg,D.,
            Schleenbecker,U., Ruckert,C., Wolfel,R. and Grass,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUL-2017) CeBiTec, Bielefeld University, Sequenz 1,
            Bielefeld 33615, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NPCR00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_NPCR00000000.  This version of the project
            (01) has the accession number NZ_NPCR01000000, and consists of
            sequences NPCR01000001-NPCR01000280.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 26-JAN-2016
            Assembly Method        :: Newbler v. 2.8
            Assembly Name          :: assembly-7709_v1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 162.88x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002272395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,588
            CDSs (total)                      :: 4,526
            Genes (coding)                    :: 4,379
            CDSs (with protein)               :: 4,379
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 55 of 147
            Pseudo Genes (incomplete)         :: 98 of 147
            Pseudo Genes (internal stop)      :: 12 of 147
            Pseudo Genes (multiple problems)  :: 17 of 147
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255506
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="7709"
                     /isolation_source="uncut heroin sample"
                     /db_xref="taxon:1402"
WGS         NPCR01000001-NPCR01000280
WGS_SCAFLD  NZ_NPCR01000001-NZ_NPCR01000280
//
LOCUS       NZ_MEDD01000000      4536032 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain YNP5-TSU, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MEDD00000000
VERSION     NZ_MEDD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05560547
            Assembly: GCF_001896295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4536032)
  AUTHORS   Ohair,J. and Zhou,S.
  TITLE     Whole genome sequencing of cellulolytic thermophiles isolated from
            Yellowstone National Park
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4536032)
  AUTHORS   Koues,O., Scholz,M., Zhou,S., Ohair,J. and Li,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2016) Agricultural and Environmental Sciences,
            Tennessee State University, 3500 John A Merritt Blvd, Nashville, TN
            37209, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MEDD00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_MEDD00000000.  This version of the project
            (01) has the accession number NZ_MEDD01000000, and consists of
            sequences MEDD01000001-MEDD01000060.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 05-MAY-2016
            Assembly Method        :: SPAdes v. 2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 196.0x
            Sequencing Technology  :: Illumina HiSeq 3000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001896295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,860
            CDSs (total)                      :: 4,763
            Genes (coding)                    :: 4,634
            CDSs (with protein)               :: 4,634
            Genes (RNA)                       :: 97
            rRNAs                             :: 6, 8, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 7 (5S, 16S)
            tRNAs                             :: 77
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 56 of 129
            Pseudo Genes (incomplete)         :: 75 of 129
            Pseudo Genes (internal stop)      :: 13 of 129
            Pseudo Genes (multiple problems)  :: 15 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4536032
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="YNP5-TSU"
                     /isolation_source="heated water in contact with
                     grass/sediment layer"
                     /db_xref="taxon:1402"
                     /geo_loc_name="USA: Yellowstone National Park, WY"
                     /lat_lon="44.78025 N 110.69826699 W"
                     /collection_date="2015-09-05"
WGS         MEDD01000001-MEDD01000060
WGS_SCAFLD  NZ_MEDD01000001-NZ_MEDD01000060
//
LOCUS       NZ_JAOVVR010000000   3135380 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brachyspira hyodysenteriae strain Bhyo_297, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOVVR000000000
VERSION     NZ_JAOVVR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31207230
            Assembly: GCF_027585335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brachyspira hyodysenteriae
  ORGANISM  Brachyspira hyodysenteriae
            Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia;
            Brachyspirales; Brachyspiraceae; Brachyspira.
REFERENCE   1  (bases 1 to 3135380)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Predictive Power of Long-Read Whole-Genome Sequencing for Rapid
            Diagnostics of Multidrug-Resistant Brachyspira hyodysenteriae
            Strains
  JOURNAL   Microbiol Spectr 11 (1), e0412322 (2023)
   PUBMED   36602320
REFERENCE   2  (bases 1 to 3135380)
  AUTHORS   Vereecke,N., Botteldoorn,N., Brosse,C., Bonckaert,C., Nauwynck,H.,
            Haesebrouck,F., Boyen,F., Maes,D. and Theuns,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-OCT-2022) Department of Pathobiology, Pharmacology
            and Zoological Medicine, Universiteit Gent, Salisburylaan 133,
            Merelbeke 9820, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOVVR000000000.1.
            The Brachyspira hyodysenteriae whole genome shotgun (WGS) project
            has the project accession NZ_JAOVVR000000000.  This version of the
            project (01) has the accession number NZ_JAOVVR010000000, and
            consists of sequences JAOVVR010000001-JAOVVR010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Canu v. 2.0; minimap2 v. 2.24; medaka v.
                                      1.6.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 157x
            Sequencing Technology  :: GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_027585335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:34:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,880
            CDSs (total)                      :: 2,840
            Genes (coding)                    :: 2,761
            CDSs (with protein)               :: 2,761
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 71 of 79
            Pseudo Genes (incomplete)         :: 8 of 79
            Pseudo Genes (internal stop)      :: 3 of 79
            Pseudo Genes (multiple problems)  :: 3 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3135380
                     /organism="Brachyspira hyodysenteriae"
                     /mol_type="genomic DNA"
                     /strain="Bhyo_297"
                     /host="pig"
                     /db_xref="taxon:159"
                     /geo_loc_name="Belgium"
                     /collection_date="2020-02-24"
WGS         JAOVVR010000001-JAOVVR010000002
WGS_SCAFLD  NZ_JAOVVR010000001-NZ_JAOVVR010000002
//
LOCUS       NZ_LQYK01000000      4520289 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain B4092, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LQYK00000000
VERSION     NZ_LQYK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03267275
            Assembly: GCF_001587195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4520289)
  AUTHORS   Krawczyk,A.O., de Jong,A., Holsappel,S., Eijlander,R.T., van
            Heel,A., Berendsen,E.M., Wells-Bennik,M.H. and Kuipers,O.P.
  TITLE     Genome Sequences of 12 Spore-Forming Bacillus Species, Comprising
            Bacillus coagulans, Bacillus licheniformis, Bacillus
            amyloliquefaciens, Bacillus sporothermodurans, and Bacillus
            vallismortis, Isolated from Foods
  JOURNAL   Genome Announc 4 (3), e00103-16 (2016)
   PUBMED   27174261
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4520289)
  AUTHORS   Berendsen,E.M., Wells-Bennik,M.H., Krawcyk,A.O., De Jong,A.,
            Holsappel,S., Eijlander,R.T. and Kuipers,O.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2016) Molecular Genetics, University of
            Groningen, Nijenborgh 7, Groningen, Groningen 9747AG, the
            Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LQYK00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_LQYK00000000.  This version of the project
            (01) has the accession number NZ_LQYK01000000, and consists of
            sequences LQYK01000001-LQYK01000082.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 2015
            Assembly Method       :: Velvet v. 1.2.10
            Assembly Name         :: B4092
            Genome Coverage       :: 100.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001587195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,844
            CDSs (total)                      :: 4,764
            Genes (coding)                    :: 4,623
            CDSs (with protein)               :: 4,623
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 73 of 141
            Pseudo Genes (incomplete)         :: 70 of 141
            Pseudo Genes (internal stop)      :: 14 of 141
            Pseudo Genes (multiple problems)  :: 15 of 141
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4520289
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="B4092"
                     /isolation_source="Buttermilk powder"
                     /db_xref="taxon:1402"
                     /geo_loc_name="Netherlands"
                     /collection_date="2012-01-10"
                     /collected_by="TIFN project"
WGS         LQYK01000001-LQYK01000082
WGS_SCAFLD  NZ_LQYK01000001-NZ_LQYK01000082
//
LOCUS       NZ_NFKW01000000      6684163 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacteroides ovatus strain An161, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NFKW00000000
VERSION     NZ_NFKW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06473630
            Assembly: GCF_002160595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacteroides ovatus
  ORGANISM  Bacteroides ovatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Bacteroides.
REFERENCE   1  (bases 1 to 6684163)
  AUTHORS   Medvecky,M., Cejkova,D., Polansky,O., Karasova,D., Kubasova,T.,
            Cizek,A. and Rychlik,I.
  TITLE     Whole genome sequencing and function prediction of 133 gut
            anaerobes isolated from chicken caecum in pure cultures
  JOURNAL   BMC Genomics 19 (1), 561 (2018)
   PUBMED   30064352
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6684163)
  AUTHORS   Medvecky,M., Cejkova,D., Polansky,O., Karasova,D., Kubasova,T.,
            Cizek,A. and Rychlik,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2017) Immunology, Veterinary Research Institute,
            Hudciova 70, Brno 62100, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NFKW00000000.1.
            The Bacteroides ovatus whole genome shotgun (WGS) project has the
            project accession NZ_NFKW00000000.  This version of the project
            (01) has the accession number NZ_NFKW01000000, and consists of
            sequences NFKW01000001-NFKW01000090.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA_UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 131x
            Sequencing Technology  :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002160595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:57:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,135
            CDSs (total)                      :: 5,055
            Genes (coding)                    :: 4,967
            CDSs (with protein)               :: 4,967
            Genes (RNA)                       :: 80
            rRNAs                             :: 4, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 18 of 88
            Pseudo Genes (incomplete)         :: 66 of 88
            Pseudo Genes (internal stop)      :: 13 of 88
            Pseudo Genes (multiple problems)  :: 9 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6684163
                     /organism="Bacteroides ovatus"
                     /mol_type="genomic DNA"
                     /strain="An161"
                     /isolation_source="caecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:28116"
                     /collection_date="2016"
WGS         NFKW01000001-NFKW01000090
WGS_SCAFLD  NZ_NFKW01000001-NZ_NFKW01000090
//
LOCUS       NZ_JAKEYY010000000   2223105 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium bifidum strain LH_1044, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKEYY000000000
VERSION     NZ_JAKEYY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24838607
            Assembly: GCF_029723435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium bifidum
  ORGANISM  Bifidobacterium bifidum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2223105)
  AUTHORS   Javvadi,S.G., Kujawska,M., Papp,D., Gontarczyk,A.M., Jordan,A.,
            Lawson,M.A., O'Neill,I.J., Alcon-Giner,C., Kiu,R., Clarke,P.,
            Beraza,N. and Hall,L.J.
  TITLE     A novel bacteriocin produced by Bifidobacterium longum subsp.
            infantis has dual antimicrobial and immunomodulatory activity
  JOURNAL   bioRxiv (2022) In press
  REMARK    DOI: 10.1101/2022.01.27.477972
REFERENCE   2  (bases 1 to 2223105)
  AUTHORS   Kiu,R. and Hall,L.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2022) Gut Microbes & Health, Quadram Institute
            Bioscience, Rosalind Franklin Road, Norwich, Norfolk NR4 7UQ,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKEYY000000000.1.
            The Bifidobacterium bifidum whole genome shotgun (WGS) project has
            the project accession NZ_JAKEYY000000000.  This version of the
            project (01) has the accession number NZ_JAKEYY010000000, and
            consists of sequences JAKEYY010000001-JAKEYY010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 64x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029723435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:58:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,899
            CDSs (total)                      :: 1,835
            Genes (coding)                    :: 1,761
            CDSs (with protein)               :: 1,761
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 54
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 30 of 74
            Pseudo Genes (incomplete)         :: 56 of 74
            Pseudo Genes (internal stop)      :: 6 of 74
            Pseudo Genes (multiple problems)  :: 17 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223105
                     /organism="Bifidobacterium bifidum"
                     /mol_type="genomic DNA"
                     /strain="LH_1044"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:1681"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
WGS         JAKEYY010000001-JAKEYY010000028
WGS_SCAFLD  NZ_JAKEYY010000001-NZ_JAKEYY010000028
//
LOCUS       NZ_ACMV01000000      5780397 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus pseudomycoides strain Rock1-4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_ACMV00000000
VERSION     NZ_ACMV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00727715
            Assembly: GCF_000161415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus pseudomycoides
  ORGANISM  Bacillus pseudomycoides
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5780397)
  AUTHORS   Zwick,M.E., Joseph,S.J., Didelot,X., Chen,P.E., Bishop-Lilly,K.A.,
            Stewart,A.C., Willner,K., Nolan,N., Lentz,S., Thomason,M.K.,
            Sozhamannan,S., Mateczun,A.J., Du,L. and Read,T.D.
  TITLE     Genomic characterization of the Bacillus cereus sensu lato species:
            backdrop to the evolution of Bacillus anthracis
  JOURNAL   Genome Res 22 (8), 1512-1524 (2012)
   PUBMED   22645259
REFERENCE   2  (bases 1 to 5780397)
  AUTHORS   Read,T.D., Akmal,A., Bishop-Lilly,K., Chen,P.E., Cook,C.,
            Kiley,M.P., Lentz,S., Mateczun,A., Nagarajan,N., Nolan,N.,
            Osborne,B.I., Pop,M., Sozhamannan,S., Stewart,A.C.,
            Sulakvelidze,A., Thomason,B., Willner,K. and Zwick,M.E.
  TITLE     Annotation of the Bacillus mycoides Rock1-4 genome
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 5780397)
  AUTHORS   Read,T.D., Akmal,A., Bishop-Lilly,K., Chen,P.E., Cook,C.,
            Kiley,M.P., Lentz,S., Mateczun,A., Nagarajan,N., Nolan,N.,
            Osborne,B.I., Pop,M., Sozhamannan,S., Stewart,A.C.,
            Sulakvelidze,A., Thomason,B., Willner,K. and Zwick,M.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-APR-2009) Biological Defense Research Directorate,
            12300 Washington Avenue, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ACMV00000000.1.
            The Bacillus pseudomycoides whole genome shotgun (WGS) project has
            the project accession NZ_ACMV00000000.  This version of the project
            (01) has the accession number NZ_ACMV01000000, and consists of
            sequences ACMV01000001-ACMV01000611.
            Bacteria available from BDRD
            Genome Coverage: 13.4X
            Sequencing Technology: 454.
            The organism was changed from 'Bacillus mycoides Rock1-4' to
            'Bacillus pseudomycoides' in June 2018.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_000161415.1
            Current Name        :: Bacillus pseudomycoides
            Previous Name       :: Bacillus mycoides Rock1-4
            Date Updated        :: 2018-06-25
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_000161455.1
            A1 Name             :: Bacillus pseudomycoides
            A1 ANI              :: 98.6216%
            A1 Query Coverage   :: 85.49%
            A1 Subject Coverage :: 85.92%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000003925.1
            A2 Name             :: Bacillus mycoides Rock1-4
            A2 ANI              :: 86.00961%
            A2 Query Coverage   :: 38.69%
            A2 Subject Coverage :: 40.36%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000161415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:19:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,229
            CDSs (total)                      :: 6,171
            Genes (coding)                    :: 5,573
            CDSs (with protein)               :: 5,573
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 598
            CDSs (without protein)            :: 598
            Pseudo Genes (ambiguous residues) :: 0 of 598
            Pseudo Genes (frameshifted)       :: 215 of 598
            Pseudo Genes (incomplete)         :: 420 of 598
            Pseudo Genes (internal stop)      :: 76 of 598
            Pseudo Genes (multiple problems)  :: 99 of 598
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5780397
                     /organism="Bacillus pseudomycoides"
                     /mol_type="genomic DNA"
                     /strain="Rock1-4"
                     /db_xref="taxon:64104"
WGS         ACMV01000001-ACMV01000611
WGS_SCAFLD  NZ_CM000743
//
LOCUS       NZ_NUYY01000000      5958115 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS076260, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NUYY00000000
VERSION     NZ_NUYY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07598415
            Assembly: GCF_002565905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5958115)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5958115)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NUYY00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NUYY00000000.  This version of the project
            (01) has the accession number NZ_NUYY01000000, and consists of
            sequences NUYY01000001-NUYY01000221.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.153
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25.79x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002565905.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:54:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,138
            CDSs (total)                      :: 6,055
            Genes (coding)                    :: 5,814
            CDSs (with protein)               :: 5,814
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 241
            CDSs (without protein)            :: 241
            Pseudo Genes (ambiguous residues) :: 0 of 241
            Pseudo Genes (frameshifted)       :: 83 of 241
            Pseudo Genes (incomplete)         :: 160 of 241
            Pseudo Genes (internal stop)      :: 54 of 241
            Pseudo Genes (multiple problems)  :: 44 of 241
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5958115
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS076260"
                     /isolation_source="grainbin dust"
                     /host="Corn"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: IA"
                     /collection_date="2014-01-14"
                     /collected_by="AgBiome"
WGS         NUYY01000001-NUYY01000221
WGS_SCAFLD  NZ_NUYY01000001-NZ_NUYY01000221
//
LOCUS       NZ_CDVQUD010000000   4601542 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Billgrantia desiderata isolate MarMAG_126518, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVQUD000000000
VERSION     NZ_CDVQUD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747220
            Assembly: GCF_977746845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Billgrantia desiderata (seawater metagenome)
  ORGANISM  Billgrantia desiderata
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Oceanospirillales; Halomonadaceae; Billgrantia.
REFERENCE   1  (bases 1 to 4601542)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVQUD000000000.1.
            The Billgrantia desiderata whole genome shotgun (WGS) project has
            the project accession NZ_CDVQUD000000000.  This version of the
            project (01) has the accession number NZ_CDVQUD010000000, and
            consists of sequences CDVQUD010000001-CDVQUD010000048.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977746845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:25:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,264
            CDSs (total)                      :: 4,210
            Genes (coding)                    :: 4,181
            CDSs (with protein)               :: 4,181
            Genes (RNA)                       :: 54
            tRNAs                             :: 49
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 6 of 29
            Pseudo Genes (incomplete)         :: 22 of 29
            Pseudo Genes (internal stop)      :: 5 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4601542
                     /organism="Billgrantia desiderata"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126518"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:52021"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-05"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVQUD010000001-CDVQUD010000048
WGS_SCAFLD  NZ_CDVQUD010000001-NZ_CDVQUD010000048
//
LOCUS       NZ_AZSY01000000      4138656 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis LMG 17339, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AZSY00000000
VERSION     NZ_AZSY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04388494
            Assembly: GCF_001507775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis LMG 17339
  ORGANISM  Bacillus licheniformis LMG 17339
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4138656)
  AUTHORS   Sun,Y., De Vos,P. and Heylen,K.
  TITLE     Nitrous oxide emission by the non-denitrifying, nitrate ammonifier
            Bacillus licheniformis
  JOURNAL   BMC Genomics 17, 68 (2016)
   PUBMED   26786044
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4138656)
  AUTHORS   Heylen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-DEC-2013) Department of Biochemistry and
            Microbiology, Ghent University, K.L. Ledeganckstraat 35, Gent 9000,
            Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AZSY00000000.1.
            The Bacillus licheniformis LMG 17339 whole genome shotgun (WGS)
            project has the project accession NZ_AZSY00000000.  This version of
            the project (01) has the accession number NZ_AZSY01000000, and
            consists of sequences AZSY01000001-AZSY01000053.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria available from BCCM/LMG. Source DNA available from
            BCCM/LMG.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC genomics wb v. 6
            Assembly Name         :: LI17339
            Genome Coverage       :: 87.4x
            Sequencing Technology :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001507775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:50:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,262
            CDSs (total)                      :: 4,217
            Genes (coding)                    :: 4,114
            CDSs (with protein)               :: 4,114
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 54 of 103
            Pseudo Genes (incomplete)         :: 55 of 103
            Pseudo Genes (internal stop)      :: 9 of 103
            Pseudo Genes (multiple problems)  :: 15 of 103
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138656
                     /organism="Bacillus licheniformis LMG 17339"
                     /mol_type="genomic DNA"
                     /strain="LMG 17339"
                     /db_xref="taxon:1131733"
WGS         AZSY01000001-AZSY01000053
WGS_SCAFLD  NZ_AZSY01000001-NZ_AZSY01000053
//
LOCUS       NZ_CDVPMI010000000   4597027 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Billgrantia desiderata isolate MarMAG_126517, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVPMI000000000
VERSION     NZ_CDVPMI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747241
            Assembly: GCF_977738035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Billgrantia desiderata (seawater metagenome)
  ORGANISM  Billgrantia desiderata
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Oceanospirillales; Halomonadaceae; Billgrantia.
REFERENCE   1  (bases 1 to 4597027)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVPMI000000000.1.
            The Billgrantia desiderata whole genome shotgun (WGS) project has
            the project accession NZ_CDVPMI000000000.  This version of the
            project (01) has the accession number NZ_CDVPMI010000000, and
            consists of sequences CDVPMI010000001-CDVPMI010000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977738035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:29:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,278
            CDSs (total)                      :: 4,225
            Genes (coding)                    :: 4,191
            CDSs (with protein)               :: 4,191
            Genes (RNA)                       :: 53
            tRNAs                             :: 48
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 6 of 34
            Pseudo Genes (incomplete)         :: 26 of 34
            Pseudo Genes (internal stop)      :: 6 of 34
            Pseudo Genes (multiple problems)  :: 4 of 34
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4597027
                     /organism="Billgrantia desiderata"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126517"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:52021"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-05"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVPMI010000001-CDVPMI010000060
WGS_SCAFLD  NZ_CDVPMI010000001-NZ_CDVPMI010000060
//
LOCUS       NZ_NTRJ01000000      6166489 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS023506, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NTRJ00000000
VERSION     NZ_NTRJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07597548
            Assembly: GCF_002560465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6166489)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6166489)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NTRJ00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NTRJ00000000.  This version of the project
            (01) has the accession number NZ_NTRJ01000000, and consists of
            sequences NTRJ01000001-NTRJ01000180.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 58.09x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002560465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:08:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,219
            CDSs (total)                      :: 6,140
            Genes (coding)                    :: 5,897
            CDSs (with protein)               :: 5,897
            Genes (RNA)                       :: 79
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 243
            CDSs (without protein)            :: 243
            Pseudo Genes (ambiguous residues) :: 0 of 243
            Pseudo Genes (frameshifted)       :: 80 of 243
            Pseudo Genes (incomplete)         :: 177 of 243
            Pseudo Genes (internal stop)      :: 52 of 243
            Pseudo Genes (multiple problems)  :: 55 of 243
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6166489
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS023506"
                     /isolation_source="core"
                     /host="Soybean"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: IA"
                     /collection_date="2014-05-08"
                     /collected_by="AgBiome"
WGS         NTRJ01000001-NTRJ01000180
WGS_SCAFLD  NZ_NTRJ01000001-NZ_NTRJ01000180
//
LOCUS       NZ_CBBVVL010000000   2834129 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Brevundimonas sp. isolate
            PELAGICS-MAG-mn-bin004197-LANDH-SM-30jul20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBVVL000000000
VERSION     NZ_CBBVVL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460698
            Assembly: GCF_964984195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Brevundimonas sp. (freshwater metagenome)
  ORGANISM  Brevundimonas sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Caulobacterales; Caulobacteraceae; Brevundimonas.
REFERENCE   1  (bases 1 to 2834129)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBVVL000000000.1.
            The Brevundimonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBVVL000000000.  This version of the project
            (01) has the accession number NZ_CBBVVL010000000, and consists of
            sequences CBBVVL010000001-CBBVVL010000045.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964984195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:31:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,844
            CDSs (total)                      :: 2,793
            Genes (coding)                    :: 2,770
            CDSs (with protein)               :: 2,770
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 4 of 23
            Pseudo Genes (incomplete)         :: 21 of 23
            Pseudo Genes (internal stop)      :: 1 of 23
            Pseudo Genes (multiple problems)  :: 2 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834129
                     /organism="Brevundimonas sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-mn-bin004197-LANDH-SM-30jul20."
                     /isolation_source="Landstejn reservoir"
                     /db_xref="taxon:1871086"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-07-30"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBVVL010000001-CBBVVL010000045
WGS_SCAFLD  NZ_CBBVVL010000001-NZ_CBBVVL010000045
//
LOCUS       NZ_JBJNPQ010000000   1915915 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium animalis subsp. lactis strain IATA135, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBJNPQ000000000
VERSION     NZ_JBJNPQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45053981
            Assembly: GCF_049204815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium animalis subsp. lactis
  ORGANISM  Bifidobacterium animalis subsp. lactis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 1915915)
  AUTHORS   Samarra,A. and Collado,M.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2024) Biotechnology, Institute of Agrochemistry
            and Food Technology, National Spanish Research Council, Catedratic
            Agustin Escardino Benlloch, 7, Paterna, VALENCIA 46980, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJNPQ000000000.1.
            The Bifidobacterium animalis subsp. lactis whole genome shotgun
            (WGS) project has the project accession NZ_JBJNPQ000000000.  This
            version of the project (01) has the accession number
            NZ_JBJNPQ010000000, and consists of sequences
            JBJNPQ010000001-JBJNPQ010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2024
            Assembly Method        :: SPAdes v. v4.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049204815.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:57:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,608
            CDSs (total)                      :: 1,548
            Genes (coding)                    :: 1,527
            CDSs (with protein)               :: 1,527
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 6 of 21
            Pseudo Genes (incomplete)         :: 14 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 1 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915915
                     /organism="Bifidobacterium animalis subsp. lactis"
                     /mol_type="genomic DNA"
                     /strain="IATA135"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="lactis"
                     /db_xref="taxon:302911"
                     /geo_loc_name="Spain: Valencia"
                     /collection_date="2022"
                     /collected_by="Anna Samarra, IATA-CSIC"
WGS         JBJNPQ010000001-JBJNPQ010000018
WGS_SCAFLD  NZ_JBJNPQ010000001-NZ_JBJNPQ010000018
//
LOCUS       NZ_NUFF01000000      5908253 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus toyonensis strain AFS000445, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NUFF00000000
VERSION     NZ_NUFF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07597240
            Assembly: GCF_002556435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus toyonensis
  ORGANISM  Bacillus toyonensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5908253)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5908253)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NUFF00000000.1.
            The Bacillus toyonensis whole genome shotgun (WGS) project has the
            project accession NZ_NUFF00000000.  This version of the project
            (01) has the accession number NZ_NUFF01000000, and consists of
            sequences NUFF01000001-NUFF01000161.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 65.15x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002556435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:56:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,057
            CDSs (total)                      :: 5,980
            Genes (coding)                    :: 5,716
            CDSs (with protein)               :: 5,716
            Genes (RNA)                       :: 77
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 264
            CDSs (without protein)            :: 264
            Pseudo Genes (ambiguous residues) :: 0 of 264
            Pseudo Genes (frameshifted)       :: 87 of 264
            Pseudo Genes (incomplete)         :: 162 of 264
            Pseudo Genes (internal stop)      :: 70 of 264
            Pseudo Genes (multiple problems)  :: 52 of 264
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5908253
                     /organism="Bacillus toyonensis"
                     /mol_type="genomic DNA"
                     /strain="AFS000445"
                     /isolation_source="plant"
                     /host="Weed"
                     /db_xref="taxon:155322"
                     /geo_loc_name="USA: IN"
                     /collection_date="2014-04-09"
                     /collected_by="AgBiome"
WGS         NUFF01000001-NUFF01000161
WGS_SCAFLD  NZ_NUFF01000001-NZ_NUFF01000161
//
LOCUS       NZ_JBJNQB010000000   2295816 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium longum subsp. longum strain IATA107, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBJNQB000000000
VERSION     NZ_JBJNQB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45053970
            Assembly: GCF_049205105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium longum subsp. longum
  ORGANISM  Bifidobacterium longum subsp. longum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2295816)
  AUTHORS   Samarra,A. and Collado,M.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2024) Biotechnology, Institute of Agrochemistry
            and Food Technology, National Spanish Research Council, Catedratic
            Agustin Escardino Benlloch, 7, Paterna, VALENCIA 46980, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJNQB000000000.1.
            The Bifidobacterium longum subsp. longum whole genome shotgun (WGS)
            project has the project accession NZ_JBJNQB000000000.  This version
            of the project (01) has the accession number NZ_JBJNQB010000000,
            and consists of sequences JBJNQB010000001-JBJNQB010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2024
            Assembly Method        :: SPAdes v. v4.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049205105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:05:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,995
            CDSs (total)                      :: 1,929
            Genes (coding)                    :: 1,876
            CDSs (with protein)               :: 1,876
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 58
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 19 of 53
            Pseudo Genes (incomplete)         :: 37 of 53
            Pseudo Genes (internal stop)      :: 4 of 53
            Pseudo Genes (multiple problems)  :: 7 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2295816
                     /organism="Bifidobacterium longum subsp. longum"
                     /mol_type="genomic DNA"
                     /strain="IATA107"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="longum"
                     /db_xref="taxon:1679"
                     /geo_loc_name="Spain: Valencia"
                     /collection_date="2022"
                     /collected_by="Anna Samarra, IATA-CSIC"
WGS         JBJNQB010000001-JBJNQB010000019
WGS_SCAFLD  NZ_JBJNQB010000001-NZ_JBJNQB010000019
//
LOCUS       NZ_JBLEQC010000000   2132103 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium adolescentis strain SH39, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLEQC000000000
VERSION     NZ_JBLEQC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46001239
            Assembly: GCF_049309865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium adolescentis
  ORGANISM  Bifidobacterium adolescentis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2132103)
  AUTHORS   Van Haute,M.J., Chacon-Vargas,K., Christensen,C.M., Yumul,S.R.,
            Abdulaali,F. and Auchtung,T.A.
  TITLE     Comparative analysis of probiotic properties of Bifidobacterium
            adolescentis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2132103)
  AUTHORS   Van Haute,M.J., Chacon-Vargas,K. and Auchtung,T.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2025) R&D, Synbiotic Health, 1901 N 21st St, Room
            410, Lincoln, NE 68588, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLEQC000000000.1.
            The Bifidobacterium adolescentis whole genome shotgun (WGS) project
            has the project accession NZ_JBLEQC000000000.  This version of the
            project (01) has the accession number NZ_JBLEQC010000000, and
            consists of sequences JBLEQC010000001-JBLEQC010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 28-FEB-2024
            Assembly Method        :: SPAdes v. 3.15
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 264x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049309865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:13:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,782
            CDSs (total)                      :: 1,715
            Genes (coding)                    :: 1,691
            CDSs (with protein)               :: 1,691
            Genes (RNA)                       :: 67
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 11 of 24
            Pseudo Genes (incomplete)         :: 19 of 24
            Pseudo Genes (internal stop)      :: 0 of 24
            Pseudo Genes (multiple problems)  :: 6 of 24
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132103
                     /organism="Bifidobacterium adolescentis"
                     /mol_type="genomic DNA"
                     /strain="SH39"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1680"
                     /geo_loc_name="USA: Lincoln, NE"
                     /collection_date="2022-05-12"
                     /collected_by="Mallory Van Haute"
WGS         JBLEQC010000001-JBLEQC010000016
WGS_SCAFLD  NZ_JBLEQC010000001-NZ_JBLEQC010000016
//
LOCUS       NZ_NTVU01000000      5999893 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS011848, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NTVU00000000
VERSION     NZ_NTVU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07597397
            Assembly: GCF_002561645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5999893)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5999893)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NTVU00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NTVU00000000.  This version of the project
            (01) has the accession number NZ_NTVU01000000, and consists of
            sequences NTVU01000001-NTVU01000144.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38.46x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002561645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:56:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,110
            CDSs (total)                      :: 6,039
            Genes (coding)                    :: 5,795
            CDSs (with protein)               :: 5,795
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 244
            CDSs (without protein)            :: 244
            Pseudo Genes (ambiguous residues) :: 0 of 244
            Pseudo Genes (frameshifted)       :: 91 of 244
            Pseudo Genes (incomplete)         :: 155 of 244
            Pseudo Genes (internal stop)      :: 60 of 244
            Pseudo Genes (multiple problems)  :: 47 of 244
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5999893
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS011848"
                     /isolation_source="core"
                     /host="Soybean"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: IA"
                     /collection_date="2014-05-08"
                     /collected_by="AgBiome"
WGS         NTVU01000001-NTVU01000144
WGS_SCAFLD  NZ_NTVU01000001-NZ_NTVU01000144
//
LOCUS       NZ_NVKY01000000      6160409 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS097514, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NVKY00000000
VERSION     NZ_NVKY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07598689
            Assembly: GCF_002552985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6160409)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6160409)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NVKY00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NVKY00000000.  This version of the project
            (01) has the accession number NZ_NVKY01000000, and consists of
            sequences NVKY01000001-NVKY01000168.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.112
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53.65x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002552985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:14:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,223
            CDSs (total)                      :: 6,149
            Genes (coding)                    :: 5,908
            CDSs (with protein)               :: 5,908
            Genes (RNA)                       :: 74
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 241
            CDSs (without protein)            :: 241
            Pseudo Genes (ambiguous residues) :: 0 of 241
            Pseudo Genes (frameshifted)       :: 79 of 241
            Pseudo Genes (incomplete)         :: 158 of 241
            Pseudo Genes (internal stop)      :: 73 of 241
            Pseudo Genes (multiple problems)  :: 54 of 241
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6160409
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS097514"
                     /isolation_source="leaf"
                     /host="Soybean"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: IA"
                     /collection_date="2014-04-17"
                     /collected_by="AgBiome"
WGS         NVKY01000001-NVKY01000168
WGS_SCAFLD  NZ_NVKY01000001-NZ_NVKY01000168
//
LOCUS       NZ_NTXT01000000      6138265 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS006689, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NTXT00000000
VERSION     NZ_NTXT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07597324
            Assembly: GCF_002558385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6138265)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6138265)
  AUTHORS   Bleich,R.M., Kirk,G.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NTXT00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NTXT00000000.  This version of the project
            (01) has the accession number NZ_NTXT01000000, and consists of
            sequences NTXT01000001-NTXT01000217.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.3x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002558385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:02:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,334
            CDSs (total)                      :: 6,267
            Genes (coding)                    :: 6,029
            CDSs (with protein)               :: 6,029
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 238
            CDSs (without protein)            :: 238
            Pseudo Genes (ambiguous residues) :: 0 of 238
            Pseudo Genes (frameshifted)       :: 89 of 238
            Pseudo Genes (incomplete)         :: 173 of 238
            Pseudo Genes (internal stop)      :: 47 of 238
            Pseudo Genes (multiple problems)  :: 54 of 238
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6138265
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS006689"
                     /isolation_source="leaf"
                     /host="Soybean"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: MN"
                     /collection_date="2014-04-17"
                     /collected_by="AgBiome"
WGS         NTXT01000001-NTXT01000217
WGS_SCAFLD  NZ_NTXT01000001-NZ_NTXT01000217
//
LOCUS       NZ_NUXA01000000      6171619 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS081620, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NUXA00000000
VERSION     NZ_NUXA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07598493
            Assembly: GCF_002566355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6171619)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6171619)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NUXA00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NUXA00000000.  This version of the project
            (01) has the accession number NZ_NUXA01000000, and consists of
            sequences NUXA01000001-NUXA01000133.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.231
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 65.36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002566355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:54:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,307
            CDSs (total)                      :: 6,229
            Genes (coding)                    :: 5,985
            CDSs (with protein)               :: 5,985
            Genes (RNA)                       :: 78
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 244
            CDSs (without protein)            :: 244
            Pseudo Genes (ambiguous residues) :: 0 of 244
            Pseudo Genes (frameshifted)       :: 89 of 244
            Pseudo Genes (incomplete)         :: 161 of 244
            Pseudo Genes (internal stop)      :: 68 of 244
            Pseudo Genes (multiple problems)  :: 60 of 244
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6171619
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS081620"
                     /isolation_source="core"
                     /host="Soybean"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: IA"
                     /collection_date="2014-05-08"
                     /collected_by="AgBiome"
WGS         NUXA01000001-NUXA01000133
WGS_SCAFLD  NZ_NUXA01000001-NZ_NUXA01000133
//
LOCUS       NZ_QROJ01000000      4566607 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain AF39-10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QROJ00000000
VERSION     NZ_QROJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09734679
            Assembly: GCF_003474315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4566607)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     A genome reference for cultivated species of the human gut
            microbiota
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4566607)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2018) BGI-CNGB, BGI, No. 11, Beishan IZ., Yantian
            Dist., Shenzhen, Guangdong 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QROJ00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_QROJ00000000.  This version of the project
            (01) has the accession number NZ_QROJ01000000, and consists of
            sequences QROJ01000001-QROJ01000018.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina Hiseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003474315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:24:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,816
            CDSs (total)                      :: 4,742
            Genes (coding)                    :: 4,638
            CDSs (with protein)               :: 4,638
            Genes (RNA)                       :: 74
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 58 of 104
            Pseudo Genes (incomplete)         :: 47 of 104
            Pseudo Genes (internal stop)      :: 16 of 104
            Pseudo Genes (multiple problems)  :: 17 of 104
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4566607
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="AF39-10"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1402"
                     /geo_loc_name="China: Shenzhen"
                     /collection_date="2014-02-01"
WGS         QROJ01000001-QROJ01000018
WGS_SCAFLD  NZ_QROJ01000001-NZ_QROJ01000018
//
LOCUS       NZ_NUPM01000000      6299054 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS030179, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NUPM00000000
VERSION     NZ_NUPM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07597797
            Assembly: GCF_002583505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6299054)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6299054)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NUPM00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NUPM00000000.  This version of the project
            (01) has the accession number NZ_NUPM01000000, and consists of
            sequences NUPM01000001-NUPM01000158.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 61.04x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002583505.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,528
            CDSs (total)                      :: 6,432
            Genes (coding)                    :: 6,192
            CDSs (with protein)               :: 6,192
            Genes (RNA)                       :: 96
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 240
            CDSs (without protein)            :: 240
            Pseudo Genes (ambiguous residues) :: 0 of 240
            Pseudo Genes (frameshifted)       :: 91 of 240
            Pseudo Genes (incomplete)         :: 167 of 240
            Pseudo Genes (internal stop)      :: 57 of 240
            Pseudo Genes (multiple problems)  :: 60 of 240
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6299054
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS030179"
                     /isolation_source="root"
                     /host="Corn"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: IA"
                     /collection_date="2014-05-27"
                     /collected_by="AgBiome"
WGS         NUPM01000001-NUPM01000158
WGS_SCAFLD  NZ_NUPM01000001-NZ_NUPM01000158
//
LOCUS       NZ_NUMM01000000      6139838 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS039774, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NUMM00000000
VERSION     NZ_NUMM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07597911
            Assembly: GCF_002578165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6139838)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6139838)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NUMM00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NUMM00000000.  This version of the project
            (01) has the accession number NZ_NUMM01000000, and consists of
            sequences NUMM01000001-NUMM01000127.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 55.66x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002578165.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,239
            CDSs (total)                      :: 6,157
            Genes (coding)                    :: 5,914
            CDSs (with protein)               :: 5,914
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 243
            CDSs (without protein)            :: 243
            Pseudo Genes (ambiguous residues) :: 0 of 243
            Pseudo Genes (frameshifted)       :: 84 of 243
            Pseudo Genes (incomplete)         :: 164 of 243
            Pseudo Genes (internal stop)      :: 68 of 243
            Pseudo Genes (multiple problems)  :: 59 of 243
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6139838
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS039774"
                     /isolation_source="core"
                     /host="Soybean"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: IA"
                     /collection_date="2014-05-08"
                     /collected_by="AgBiome"
WGS         NUMM01000001-NUMM01000127
WGS_SCAFLD  NZ_NUMM01000001-NZ_NUMM01000127
//
LOCUS       NZ_NUJX01000000      6040236 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS045516, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NUJX00000000
VERSION     NZ_NUJX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07598002
            Assembly: GCF_002576925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6040236)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6040236)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NUJX00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NUJX00000000.  This version of the project
            (01) has the accession number NZ_NUJX01000000, and consists of
            sequences NUJX01000001-NUJX01000155.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 36.67x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002576925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:28:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,150
            CDSs (total)                      :: 6,077
            Genes (coding)                    :: 5,841
            CDSs (with protein)               :: 5,841
            Genes (RNA)                       :: 73
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 236
            CDSs (without protein)            :: 236
            Pseudo Genes (ambiguous residues) :: 0 of 236
            Pseudo Genes (frameshifted)       :: 85 of 236
            Pseudo Genes (incomplete)         :: 156 of 236
            Pseudo Genes (internal stop)      :: 59 of 236
            Pseudo Genes (multiple problems)  :: 53 of 236
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6040236
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS045516"
                     /isolation_source="core"
                     /host="Corn"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: NC"
                     /collection_date="2014-04-21"
                     /collected_by="AgBiome"
WGS         NUJX01000001-NUJX01000155
WGS_SCAFLD  NZ_NUJX01000001-NZ_NUJX01000155
//
LOCUS       NZ_NUJF01000000      6030332 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain AFS047607, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NUJF00000000
VERSION     NZ_NUJF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07598025
            Assembly: GCF_002576755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6030332)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Large-scale bioinformatics analysis of Bacillus genomes uncovers
            conserved roles of natural products in bacterial physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6030332)
  AUTHORS   Bleich,R.M., Grubbs,K.J., Santa Maria,K.C., Allen,S.E., Farag,S.,
            Shank,E.A. and Bowers,A.
  CONSRTM   Agbiome Team Llc
  TITLE     Direct Submission
  JOURNAL   Submitted (01-SEP-2017) Chemical Biology and Medicinal Chemistry,
            UNC Chapel Hill, 125 Mason Farm Rd., Chapel Hill, NC 17599, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NUJF00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NUJF00000000.  This version of the project
            (01) has the accession number NZ_NUJF01000000, and consists of
            sequences NUJF01000001-NUJF01000141.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Assembly Cell v. 4.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 52.98x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002576755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:24:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,196
            CDSs (total)                      :: 6,130
            Genes (coding)                    :: 5,890
            CDSs (with protein)               :: 5,890
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 240
            CDSs (without protein)            :: 240
            Pseudo Genes (ambiguous residues) :: 0 of 240
            Pseudo Genes (frameshifted)       :: 91 of 240
            Pseudo Genes (incomplete)         :: 166 of 240
            Pseudo Genes (internal stop)      :: 49 of 240
            Pseudo Genes (multiple problems)  :: 51 of 240
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6030332
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="AFS047607"
                     /isolation_source="leaf"
                     /host="Soybean"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: MN"
                     /collection_date="2014-04-17"
                     /collected_by="AgBiome"
WGS         NUJF01000001-NUJF01000141
WGS_SCAFLD  NZ_NUJF01000001-NZ_NUJF01000141
//
LOCUS       NZ_LABT01000000      6096675 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus mycoides strain WSBC 10969, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LABT00000000
VERSION     NZ_LABT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03325948
            Assembly: GCF_001044935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus mycoides (Bacillus weihenstephanensis)
  ORGANISM  Bacillus mycoides
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6096675)
  AUTHORS   Bohm,M.E., Huptas,C., Krey,V.M. and Scherer,S.
  TITLE     Massive horizontal gene transfer, strictly vertical inheritance and
            ancient duplications differentially shape the evolution of Bacillus
            cereus enterotoxin operons hbl, cytK and nhe
  JOURNAL   BMC Evol Biol 15, 246 (2015)
   PUBMED   26555390
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6096675)
  AUTHORS   Boehm,M.-E., Huptas,C., Krey,V.M. and Scherer,S.
  TITLE     Evolution of B. cereus sensu lato: Distribution, horizontal
            transfer and duplication of chromosomal virulence genes
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 6096675)
  AUTHORS   Boehm,M.-E., Huptas,C., Krey,V.M. and Scherer,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2015) Lehrstuhl fuer Mikrobielle Oekologie,
            Technische Universitaet Muenchen, Weihenstephaner Berg 3, Freising
            85350, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LABT00000000.1.
            The Bacillus mycoides whole genome shotgun (WGS) project has the
            project accession NZ_LABT00000000.  This version of the project
            (01) has the accession number NZ_LABT01000000, and consists of
            sequences LABT01000001-LABT01000054.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABySS v. 1.3.7
            Genome Coverage       :: 295.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001044935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:36:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,388
            CDSs (total)                      :: 6,248
            Genes (coding)                    :: 5,899
            CDSs (with protein)               :: 5,899
            Genes (RNA)                       :: 140
            rRNAs                             :: 12, 14, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 12, 13, 13 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 96
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 349
            CDSs (without protein)            :: 349
            Pseudo Genes (ambiguous residues) :: 0 of 349
            Pseudo Genes (frameshifted)       :: 131 of 349
            Pseudo Genes (incomplete)         :: 223 of 349
            Pseudo Genes (internal stop)      :: 94 of 349
            Pseudo Genes (multiple problems)  :: 84 of 349
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6096675
                     /organism="Bacillus mycoides"
                     /mol_type="genomic DNA"
                     /strain="WSBC 10969"
                     /isolation_source="raw milk"
                     /db_xref="taxon:1405"
                     /geo_loc_name="Germany"
                     /collection_date="2014"
                     /collected_by="Mareike Wenning"
WGS         LABT01000001-LABT01000054
WGS_SCAFLD  NZ_LABT01000001-NZ_LABT01000054
//
LOCUS       NZ_NIMG01000000      4337204 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain BAC-14813, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NIMG00000000
VERSION     NZ_NIMG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05583250
            Assembly: GCF_007832335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4337204)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Genome sequence analysis of >100 Bacillus licheniformis strains
            suggests intrinsic resistance to this species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4337204)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Health, NIZO Food Research, Kernhemseweg 2,
            Ede 6710 BA, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NIMG00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_NIMG00000000.  This version of the project
            (01) has the accession number NZ_NIMG01000000, and consists of
            sequences NIMG01000001-NIMG01000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 62x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007832335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:57:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,621
            CDSs (total)                      :: 4,548
            Genes (coding)                    :: 4,429
            CDSs (with protein)               :: 4,429
            Genes (RNA)                       :: 73
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 60 of 119
            Pseudo Genes (incomplete)         :: 61 of 119
            Pseudo Genes (internal stop)      :: 15 of 119
            Pseudo Genes (multiple problems)  :: 16 of 119
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4337204
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="BAC-14813"
                     /db_xref="taxon:1402"
                     /geo_loc_name="Germany"
WGS         NIMG01000001-NIMG01000065
WGS_SCAFLD  NZ_NIMG01000001-NZ_NIMG01000065
//
LOCUS       NZ_NILB01000000      4444066 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain BAC-16874, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NILB00000000
VERSION     NZ_NILB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05583281
            Assembly: GCF_007831435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4444066)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Genome sequence analysis of >100 Bacillus licheniformis strains
            suggests intrinsic resistance to this species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4444066)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Health, NIZO Food Research, Kernhemseweg 2,
            Ede 6710 BA, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NILB00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_NILB00000000.  This version of the project
            (01) has the accession number NZ_NILB01000000, and consists of
            sequences NILB01000001-NILB01000061.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007831435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:54:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,751
            CDSs (total)                      :: 4,680
            Genes (coding)                    :: 4,561
            CDSs (with protein)               :: 4,561
            Genes (RNA)                       :: 71
            tRNAs                             :: 66
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 54 of 119
            Pseudo Genes (incomplete)         :: 67 of 119
            Pseudo Genes (internal stop)      :: 13 of 119
            Pseudo Genes (multiple problems)  :: 14 of 119
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4444066
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="BAC-16874"
                     /db_xref="taxon:1402"
                     /geo_loc_name="Germany"
WGS         NILB01000001-NILB01000061
WGS_SCAFLD  NZ_NILB01000001-NZ_NILB01000061
//
LOCUS       NZ_SJQH01000000      5964825 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus toyonensis strain MS735, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SJQH00000000
VERSION     NZ_SJQH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10979532
            Assembly: GCF_004330305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus toyonensis
  ORGANISM  Bacillus toyonensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5964825)
  AUTHORS   Fiedler,G., Schneider,C., Igbinosa,E.O., Kabisch,J., Brinks,E.,
            Becker,B., Stoll,D.A., Cho,G.-S., Huch,M. and Franz,C.M.A.P.
  TITLE     Bacillus cereus isolates from fresh vegetables
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5964825)
  AUTHORS   Fiedler,G., Schneider,C., Igbinosa,E.O., Kabisch,J., Brinks,E.,
            Becker,B., Stoll,D.A., Cho,G.-S., Huch,M. and Franz,C.M.A.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2019) Microbiology and Biotechnology, Max
            Rubner-Institut, Hermann-Weigmann-Str. 1, Kiel 24103, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SJQH00000000.1.
            The Bacillus toyonensis whole genome shotgun (WGS) project has the
            project accession NZ_SJQH00000000.  This version of the project
            (01) has the accession number NZ_SJQH01000000, and consists of
            sequences SJQH01000001-SJQH01000077.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-APR-2018
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 9x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004330305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:00:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,105
            CDSs (total)                      :: 6,009
            Genes (coding)                    :: 5,744
            CDSs (with protein)               :: 5,744
            Genes (RNA)                       :: 96
            rRNAs                             :: 8, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 7, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 265
            CDSs (without protein)            :: 265
            Pseudo Genes (ambiguous residues) :: 0 of 265
            Pseudo Genes (frameshifted)       :: 114 of 265
            Pseudo Genes (incomplete)         :: 152 of 265
            Pseudo Genes (internal stop)      :: 79 of 265
            Pseudo Genes (multiple problems)  :: 70 of 265
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5964825
                     /organism="Bacillus toyonensis"
                     /mol_type="genomic DNA"
                     /strain="MS735"
                     /isolation_source="Mixed salad"
                     /db_xref="taxon:155322"
                     /geo_loc_name="Germany: Kiel"
                     /lat_lon="54.3213 N 10.1348 E"
                     /collection_date="2015-05-02"
                     /collected_by="Gregor Fiedler"
WGS         SJQH01000001-SJQH01000077
WGS_SCAFLD  NZ_SJQH01000001-NZ_SJQH01000077
//
LOCUS       NZ_NIMH01000000      4212288 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain BAC-14810, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NIMH00000000
VERSION     NZ_NIMH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05583249
            Assembly: GCF_007832135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4212288)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Genome sequence analysis of >100 Bacillus licheniformis strains
            suggests intrinsic resistance to this species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4212288)
  AUTHORS   Wels,M., Siezen,R.J., Johansen,E., Stuer-Lauridsen,B., Bjerre,K.
            and Nielsen,B.K.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) Health, NIZO Food Research, Kernhemseweg 2,
            Ede 6710 BA, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NIMH00000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_NIMH00000000.  This version of the project
            (01) has the accession number NZ_NIMH01000000, and consists of
            sequences NIMH01000001-NIMH01000080.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 59x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007832135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:02:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,454
            CDSs (total)                      :: 4,381
            Genes (coding)                    :: 4,253
            CDSs (with protein)               :: 4,253
            Genes (RNA)                       :: 73
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 67
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 59 of 128
            Pseudo Genes (incomplete)         :: 72 of 128
            Pseudo Genes (internal stop)      :: 15 of 128
            Pseudo Genes (multiple problems)  :: 17 of 128
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4212288
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="BAC-14810"
                     /db_xref="taxon:1402"
                     /geo_loc_name="Germany"
WGS         NIMH01000001-NIMH01000080
WGS_SCAFLD  NZ_NIMH01000001-NZ_NIMH01000080
//
LOCUS       NZ_NKAU01000000      5846166 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain 26-4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NKAU00000000
VERSION     NZ_NKAU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07267362
            Assembly: GCF_009935475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5846166)
  AUTHORS   Cui,Y.
  TITLE     Improper usage of probiotics constitutes a potential risk of public
            health
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5846166)
  AUTHORS   Cui,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2017) Beijing Advanced Innovation Center for Food
            Nutrition and Human Health, College of Veterinary Medicine, China
            Agricultural University, Yuanmingyuan West Road, Beijing 100193,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NKAU00000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_NKAU00000000.  This version of the project
            (01) has the accession number NZ_NKAU01000000, and consists of
            sequences NKAU01000001-NKAU01000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9.5.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009935475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:22:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,992
            CDSs (total)                      :: 5,918
            Genes (coding)                    :: 5,674
            CDSs (with protein)               :: 5,674
            Genes (RNA)                       :: 74
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 65
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 244
            CDSs (without protein)            :: 244
            Pseudo Genes (ambiguous residues) :: 0 of 244
            Pseudo Genes (frameshifted)       :: 81 of 244
            Pseudo Genes (incomplete)         :: 182 of 244
            Pseudo Genes (internal stop)      :: 60 of 244
            Pseudo Genes (multiple problems)  :: 62 of 244
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5846166
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="26-4"
                     /db_xref="taxon:1428"
                     /geo_loc_name="China"
                     /collection_date="2016-04"
                     /note="commercial probiotic used for plant"
WGS         NKAU01000001-NKAU01000048
WGS_SCAFLD  NZ_NKAU01000001-NZ_NKAU01000048
//
LOCUS       NZ_LDGE01000000      3746618 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus safensis strain G25-64, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LDGE00000000
VERSION     NZ_LDGE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03654034
            Assembly: GCF_015844715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus safensis
  ORGANISM  Bacillus safensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 3746618)
  AUTHORS   Zheng,Z., Zheng,J., Zhang,Z., Peng,D. and Sun,M.
  TITLE     Nematicidal spore-forming Bacilli share similar virulence factors
            and mechanisms
  JOURNAL   Sci Rep 6, 31341 (2016)
   PUBMED   27539267
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746618)
  AUTHORS   Zheng,Z. and Sun,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAY-2015) Microbiology, Institute of Life Sciences
            and Technology, Shizishan str., Wuhan, Hubei 430070, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LDGE00000000.1.
            The Bacillus safensis whole genome shotgun (WGS) project has the
            project accession NZ_LDGE00000000.  This version of the project
            (01) has the accession number NZ_LDGE01000000, and consists of
            sequences LDGE01000001-LDGE01000012.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 1.3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 170.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015844715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:35:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,843
            CDSs (total)                      :: 3,727
            Genes (coding)                    :: 3,689
            CDSs (with protein)               :: 3,689
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7 (5S, 16S)
            partial rRNAs                     :: 8 (23S)
            tRNAs                             :: 88
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 13 of 38
            Pseudo Genes (incomplete)         :: 29 of 38
            Pseudo Genes (internal stop)      :: 6 of 38
            Pseudo Genes (multiple problems)  :: 8 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746618
                     /organism="Bacillus safensis"
                     /mol_type="genomic DNA"
                     /strain="G25-64"
                     /isolation_source="maybe soil"
                     /db_xref="taxon:561879"
                     /geo_loc_name="China"
                     /collection_date="2011-09-18"
WGS         LDGE01000001-LDGE01000012
WGS_SCAFLD  NZ_LDGE01000001-NZ_LDGE01000012
//
LOCUS       NZ_LDFH01000000      3746512 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus safensis strain G25-38, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LDFH00000000
VERSION     NZ_LDFH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03652120
            Assembly: GCF_015854515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus safensis
  ORGANISM  Bacillus safensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 3746512)
  AUTHORS   Zheng,Z., Zheng,J., Zhang,Z., Peng,D. and Sun,M.
  TITLE     Nematicidal spore-forming Bacilli share similar virulence factors
            and mechanisms
  JOURNAL   Sci Rep 6, 31341 (2016)
   PUBMED   27539267
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746512)
  AUTHORS   Zheng,Z. and Sun,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2015) Microbiology, Institute of Life Sciences
            and Technology, Shizishan str., Wuhan, Hubei 430070, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LDFH00000000.1.
            The Bacillus safensis whole genome shotgun (WGS) project has the
            project accession NZ_LDFH00000000.  This version of the project
            (01) has the accession number NZ_LDFH01000000, and consists of
            sequences LDFH01000001-LDFH01000012.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 1.3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 170.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015854515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:37:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,843
            CDSs (total)                      :: 3,727
            Genes (coding)                    :: 3,689
            CDSs (with protein)               :: 3,689
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7 (5S, 16S)
            partial rRNAs                     :: 8 (23S)
            tRNAs                             :: 88
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 13 of 38
            Pseudo Genes (incomplete)         :: 29 of 38
            Pseudo Genes (internal stop)      :: 6 of 38
            Pseudo Genes (multiple problems)  :: 8 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746512
                     /organism="Bacillus safensis"
                     /mol_type="genomic DNA"
                     /strain="G25-38"
                     /isolation_source="maybe soil"
                     /db_xref="taxon:561879"
                     /geo_loc_name="China"
                     /collection_date="2011-09-18"
WGS         LDFH01000001-LDFH01000012
WGS_SCAFLD  NZ_LDFH01000001-NZ_LDFH01000012
//
LOCUS       NZ_WQQH01000000      2263262 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bifidobacterium adolescentis strain MCC258, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WQQH00000000
VERSION     NZ_WQQH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12147359
            Assembly: GCF_018785705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bifidobacterium adolescentis
  ORGANISM  Bifidobacterium adolescentis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (bases 1 to 2263262)
  AUTHORS   Perez,M., Ntemiri,A., Tan,H., Harris,H.M.B., Roager,H.M.,
            Ribiere,C. and O'Toole,P.W.
  TITLE     A synthetic consortium of 100 gut commensals modulates the
            composition and function in a colon model of the microbiome of
            elderly subjects
  JOURNAL   Gut Microbes 13 (1), 1-19 (2021)
   PUBMED   33993839
REFERENCE   2  (bases 1 to 2263262)
  AUTHORS   Harris,H.M.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2019) Microbiology Department, University College
            Cork, Western road, Cork, Cork 0000, Ireland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WQQH00000000.1.
            The Bifidobacterium adolescentis whole genome shotgun (WGS) project
            has the project accession NZ_WQQH00000000.  This version of the
            project (01) has the accession number NZ_WQQH01000000, and consists
            of sequences WQQH01000001-WQQH01000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 277.989x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018785705.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:39:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,903
            CDSs (total)                      :: 1,835
            Genes (coding)                    :: 1,802
            CDSs (with protein)               :: 1,802
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 4, 3 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 14 of 33
            Pseudo Genes (incomplete)         :: 26 of 33
            Pseudo Genes (internal stop)      :: 4 of 33
            Pseudo Genes (multiple problems)  :: 11 of 33
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263262
                     /organism="Bifidobacterium adolescentis"
                     /mol_type="genomic DNA"
                     /strain="MCC258"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:1680"
                     /geo_loc_name="Ireland"
                     /lat_lon="51.8985 N 8.4756 W"
WGS         WQQH01000001-WQQH01000030
WGS_SCAFLD  NZ_WQQH01000001-NZ_WQQH01000030
//
LOCUS       NZ_JALDXC010000000   3640419 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus pumilus strain AVRO6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALDXC000000000
VERSION     NZ_JALDXC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26871133
            Assembly: GCF_022758335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus pumilus
  ORGANISM  Bacillus pumilus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 3640419)
  AUTHORS   Mukhtar,S.
  TITLE     PGPR characterization of root associated bacteria from Avena fatua
            and Brachiaria reptans growing in Heavy-Metal Polluted Environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3640419)
  AUTHORS   Mukhtar,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2022) Department of Biological Sciences, Forman
            Christian College, Room 405, Armacost Science Building, Lahore,
            Punjab 54600, Pakistan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALDXC000000000.1.
            The Bacillus pumilus whole genome shotgun (WGS) project has the
            project accession NZ_JALDXC000000000.  This version of the project
            (01) has the accession number NZ_JALDXC010000000, and consists of
            sequences JALDXC010000001-JALDXC010000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Salma Mukhtar.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 79.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022758335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:22:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,742
            CDSs (total)                      :: 3,663
            Genes (coding)                    :: 3,624
            CDSs (with protein)               :: 3,624
            Genes (RNA)                       :: 79
            rRNAs                             :: 7, 7, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6, 6 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 14 of 39
            Pseudo Genes (incomplete)         :: 28 of 39
            Pseudo Genes (internal stop)      :: 6 of 39
            Pseudo Genes (multiple problems)  :: 9 of 39
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3640419
                     /organism="Bacillus pumilus"
                     /mol_type="genomic DNA"
                     /strain="AVRO6"
                     /isolation_source="plant root"
                     /db_xref="taxon:1408"
                     /geo_loc_name="Pakistan: Lahore"
                     /collection_date="2020-07"
WGS         JALDXC010000001-JALDXC010000017
WGS_SCAFLD  NZ_JALDXC010000001-NZ_JALDXC010000017
//
LOCUS       NZ_JARGGN010000000   3677028 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus safensis strain JLC8092, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JARGGN000000000
VERSION     NZ_JARGGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32912879
            Assembly: GCF_029211445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus safensis
  ORGANISM  Bacillus safensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 3677028)
  AUTHORS   Humphrey,B., Mackenzie,M., Lobitz,M., Schambach,J., Lasley,G.,
            Kolker,S., Bryce,R., Haley,M., Williams,K.P., Smallwood,C. and
            Cahill,J.
  TITLE     Biotic countermeasures that rescue Nannochloropsis gaditana from a
            Bacillus safensis infection
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3677028)
  AUTHORS   Humphrey,B., Mackenzie,M., Lobitz,M., Schambach,J., Lasley,G.,
            Kolker,S., Bryce,R., Haley,M., Williams,K.P., Smallwood,C. and
            Cahill,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2023) Systems Biology, Sandia National
            Laboratories, 7011 East Ave, Livermore, CA 94550, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARGGN000000000.1.
            The Bacillus safensis whole genome shotgun (WGS) project has the
            project accession NZ_JARGGN000000000.  This version of the project
            (01) has the accession number NZ_JARGGN010000000, and consists of
            sequences JARGGN010000001-JARGGN010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 54.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029211445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,812
            CDSs (total)                      :: 3,714
            Genes (coding)                    :: 3,676
            CDSs (with protein)               :: 3,676
            Genes (RNA)                       :: 98
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1 (5S, 23S)
            partial rRNAs                     :: 7, 6 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 14 of 38
            Pseudo Genes (incomplete)         :: 27 of 38
            Pseudo Genes (internal stop)      :: 4 of 38
            Pseudo Genes (multiple problems)  :: 7 of 38
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677028
                     /organism="Bacillus safensis"
                     /mol_type="genomic DNA"
                     /strain="JLC8092"
                     /isolation_source="soil, rose rhizosphere"
                     /db_xref="taxon:561879"
                     /geo_loc_name="USA: La Verne, California"
                     /collection_date="2013"
WGS         JARGGN010000001-JARGGN010000013
WGS_SCAFLD  NZ_JARGGN010000001-NZ_JARGGN010000013
//
LOCUS       NZ_JARHXM010000000   5308120 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus pseudomycoides strain Cr_R1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARHXM000000000
VERSION     NZ_JARHXM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33442695
            Assembly: GCF_029222575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus pseudomycoides
  ORGANISM  Bacillus pseudomycoides
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5308120)
  AUTHORS   Kotzamanidis,C. and Malousi,A.
  TITLE     Soil bacteria isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5308120)
  AUTHORS   Kotzamanidis,C. and Malousi,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2023) Medical School, Aristotle University of
            Thessaloniki, Aristotle University Campus, Thessaloniki 54124,
            Greece
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARHXM000000000.1.
            The Bacillus pseudomycoides whole genome shotgun (WGS) project has
            the project accession NZ_JARHXM000000000.  This version of the
            project (01) has the accession number NZ_JARHXM010000000, and
            consists of sequences JARHXM010000001-JARHXM010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: FEB-2023
            Assembly Method        :: skesa v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 223.2242758036329x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029222575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:08:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,535
            CDSs (total)                      :: 5,441
            Genes (coding)                    :: 5,047
            CDSs (with protein)               :: 5,047
            Genes (RNA)                       :: 94
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 394
            CDSs (without protein)            :: 394
            Pseudo Genes (ambiguous residues) :: 0 of 394
            Pseudo Genes (frameshifted)       :: 102 of 394
            Pseudo Genes (incomplete)         :: 302 of 394
            Pseudo Genes (internal stop)      :: 66 of 394
            Pseudo Genes (multiple problems)  :: 74 of 394
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5308120
                     /organism="Bacillus pseudomycoides"
                     /mol_type="genomic DNA"
                     /strain="Cr_R1"
                     /isolation_source="soil"
                     /db_xref="taxon:64104"
                     /geo_loc_name="Greece"
                     /collection_date="2021"
WGS         JARHXM010000001-JARHXM010000158
WGS_SCAFLD  NZ_JARHXM010000001-NZ_JARHXM010000158
//
LOCUS       NZ_JABVAQ010000000   6528453 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus thuringiensis strain FDAARGOS_801, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABVAQ000000000
VERSION     NZ_JABVAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11056516
            Assembly: GCF_013346845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus thuringiensis
  ORGANISM  Bacillus thuringiensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6528453)
  AUTHORS   Nelson,B., Plummer,A., Tallon,L., Sadzewicz,L., Zhao,X.,
            Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S., Myers,T.,
            Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx
            tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6528453)
  AUTHORS   Nelson,B., Plummer,A., Tallon,L., Sadzewicz,L., Zhao,X.,
            Vavikolanu,K., Mehta,A., Aluvathingal,J., Nadendla,S., Myers,T.,
            Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAY-2020) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Spring, MD 20993-0002, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABVAQ000000000.1.
            The Bacillus thuringiensis whole genome shotgun (WGS) project has
            the project accession NZ_JABVAQ000000000.  This version of the
            project (01) has the accession number NZ_JABVAQ010000000, and
            consists of sequences JABVAQ010000001-JABVAQ010000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SMRT v. 2.3.0, HGAP v. 3, SPAdes v. 3.11.1
            Genome Coverage       :: 1141.98x
            Sequencing Technology :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013346845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:08:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,771
            CDSs (total)                      :: 6,605
            Genes (coding)                    :: 6,287
            CDSs (with protein)               :: 6,287
            Genes (RNA)                       :: 166
            rRNAs                             :: 18, 17, 19 (5S, 16S, 23S)
            complete rRNAs                    :: 18, 17, 16 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 107
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 318
            CDSs (without protein)            :: 318
            Pseudo Genes (ambiguous residues) :: 0 of 318
            Pseudo Genes (frameshifted)       :: 90 of 318
            Pseudo Genes (incomplete)         :: 241 of 318
            Pseudo Genes (internal stop)      :: 50 of 318
            Pseudo Genes (multiple problems)  :: 52 of 318
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6528453
                     /organism="Bacillus thuringiensis"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_801"
                     /culture_collection="FDA:FDAARGOS_801"
                     /db_xref="taxon:1428"
                     /geo_loc_name="USA: MD"
                     /collected_by="Tetracore"
WGS         JABVAQ010000001-JABVAQ010000013
WGS_SCAFLD  NZ_JABVAQ010000001-NZ_JABVAQ010000013
//
LOCUS       NZ_JARLWK010000000   4194966 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Bacillus licheniformis strain NRS-1234, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARLWK000000000
VERSION     NZ_JARLWK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32927442
            Assembly: GCF_037907265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4194966)
  AUTHORS   Dunlap,C.
  TITLE     Bacillus Genome Sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4194966)
  AUTHORS   Dunlap,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2023) CBP, USDA-ARS-NCAUR, 1815 N. University
            St., Peoria, IL 61604, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARLWK000000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_JARLWK000000000.  This version of the
            project (01) has the accession number NZ_JARLWK010000000, and
            consists of sequences JARLWK010000001-JARLWK010000061.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 21
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 58x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037907265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:00:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,393
            CDSs (total)                      :: 4,315
            Genes (coding)                    :: 4,184
            CDSs (with protein)               :: 4,184
            Genes (RNA)                       :: 78
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 69
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 74 of 131
            Pseudo Genes (incomplete)         :: 61 of 131
            Pseudo Genes (internal stop)      :: 13 of 131
            Pseudo Genes (multiple problems)  :: 16 of 131
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4194966
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="NRS-1234"
                     /isolation_source="NRS 243 on filter paper exposed to
                     methyl bromide for 48 hrs"
                     /db_xref="taxon:1402"
                     /collection_date="1951-10-16"
WGS         JARLWK010000001-JARLWK010000061
WGS_SCAFLD  NZ_JARLWK010000001-NZ_JARLWK010000061
//
LOCUS       NZ_LFOW01000000      3791338 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain Prevot 697B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFOW00000000
VERSION     NZ_LFOW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779951
            Assembly: GCF_001573465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3791338)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3791338)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFOW00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFOW00000000.  This version of the project
            (01) has the accession number NZ_LFOW01000000, and consists of
            sequences LFOW01000001-LFOW01000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 155.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,565
            CDSs (total)                      :: 3,494
            Genes (coding)                    :: 3,426
            CDSs (with protein)               :: 3,426
            Genes (RNA)                       :: 71
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 26 of 68
            Pseudo Genes (incomplete)         :: 42 of 68
            Pseudo Genes (internal stop)      :: 10 of 68
            Pseudo Genes (multiple problems)  :: 8 of 68
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3791338
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="Prevot 697B"
                     /serotype="A"
                     /isolation_source="cat gut"
                     /db_xref="taxon:1491"
                     /geo_loc_name="Sweden"
                     /collection_date="1952"
                     /subtype="A1"
                     /subgroup="Group I"
WGS         LFOW01000001-LFOW01000034
WGS_SCAFLD  NZ_LFOW01000001-NZ_LFOW01000034
//
LOCUS       NZ_LFPP01000000      3873577 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain SU1575NT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFPP00000000
VERSION     NZ_LFPP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03780006
            Assembly: GCF_001573935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3873577)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3873577)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFPP00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFPP00000000.  This version of the project
            (01) has the accession number NZ_LFPP01000000, and consists of
            sequences LFPP01000001-LFPP01000038.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 299.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,609
            CDSs (total)                      :: 3,523
            Genes (coding)                    :: 3,452
            CDSs (with protein)               :: 3,452
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 21 of 71
            Pseudo Genes (incomplete)         :: 55 of 71
            Pseudo Genes (internal stop)      :: 7 of 71
            Pseudo Genes (multiple problems)  :: 10 of 71
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873577
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="SU1575NT"
                     /isolation_source="soil - colony variant of SU1575"
                     /db_xref="taxon:1491"
                     /geo_loc_name="Argentina"
                     /collection_date="1999"
                     /collected_by="Universidad Nacional de Cuyo"
                     /subgroup="Group I"
WGS         LFPP01000001-LFPP01000038
WGS_SCAFLD  NZ_LFPP01000001-NZ_LFPP01000038
//
LOCUS       NZ_LFPF01000000      4008651 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain Walls 8G, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFPF00000000
VERSION     NZ_LFPF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779992
            Assembly: GCF_001573665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 4008651)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4008651)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFPF00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFPF00000000.  This version of the project
            (01) has the accession number NZ_LFPF01000000, and consists of
            sequences LFPF01000001-LFPF01000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 129.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:41:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,765
            CDSs (total)                      :: 3,699
            Genes (coding)                    :: 3,645
            CDSs (with protein)               :: 3,645
            Genes (RNA)                       :: 66
            rRNAs                             :: 6, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 4, 2 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 13 of 54
            Pseudo Genes (incomplete)         :: 39 of 54
            Pseudo Genes (internal stop)      :: 11 of 54
            Pseudo Genes (multiple problems)  :: 8 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4008651
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="Walls 8G"
                     /serotype="F"
                     /isolation_source="crabs (environmental isolate)"
                     /db_xref="taxon:1491"
                     /geo_loc_name="USA: Virginia"
                     /collection_date="1968"
                     /subtype="F1"
                     /subgroup="Group I"
WGS         LFPF01000001-LFPF01000065
WGS_SCAFLD  NZ_LFPF01000001-NZ_LFPF01000065
//
LOCUS       NZ_LFOX01000000      3812410 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain Hall 80, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFOX00000000
VERSION     NZ_LFOX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779985
            Assembly: GCF_001573485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3812410)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812410)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFOX00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFOX00000000.  This version of the project
            (01) has the accession number NZ_LFOX01000000, and consists of
            sequences LFOX01000001-LFOX01000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 91.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,574
            CDSs (total)                      :: 3,510
            Genes (coding)                    :: 3,445
            CDSs (with protein)               :: 3,445
            Genes (RNA)                       :: 64
            rRNAs                             :: 6, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 2 (5S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 21 of 65
            Pseudo Genes (incomplete)         :: 43 of 65
            Pseudo Genes (internal stop)      :: 18 of 65
            Pseudo Genes (multiple problems)  :: 14 of 65
            CRISPR Arrays                     :: 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812410
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="Hall 80"
                     /serotype="B"
                     /isolation_source="beans (foodborne isolate)"
                     /db_xref="taxon:1491"
                     /geo_loc_name="USA: Illinois"
                     /collection_date="1918"
                     /subtype="B1"
                     /subgroup="Group I"
WGS         LFOX01000001-LFOX01000065
WGS_SCAFLD  NZ_LFOX01000001-NZ_LFOX01000065
//
LOCUS       NZ_LFRD01000000      3864510 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain VPI 7124, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFRD00000000
VERSION     NZ_LFRD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779946
            Assembly: GCF_001573295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3864510)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3864510)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFRD00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFRD00000000.  This version of the project
            (01) has the accession number NZ_LFRD01000000, and consists of
            sequences LFRD01000001-LFRD01000080.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:42:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,630
            CDSs (total)                      :: 3,582
            Genes (coding)                    :: 3,510
            CDSs (with protein)               :: 3,510
            Genes (RNA)                       :: 48
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 25 of 72
            Pseudo Genes (incomplete)         :: 44 of 72
            Pseudo Genes (internal stop)      :: 9 of 72
            Pseudo Genes (multiple problems)  :: 6 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3864510
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="VPI 7124"
                     /serotype="A"
                     /isolation_source="soil"
                     /db_xref="taxon:1491"
                     /geo_loc_name="USA: Virginia"
                     /subtype="A1"
                     /subgroup="Group I"
WGS         LFRD01000001-LFRD01000080
WGS_SCAFLD  NZ_LFRD01000001-NZ_LFRD01000080
//
LOCUS       NZ_LFPL01000000      3869437 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain Mauritius, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFPL00000000
VERSION     NZ_LFPL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779961
            Assembly: GCF_001573825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3869437)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3869437)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFPL00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFPL00000000.  This version of the project
            (01) has the accession number NZ_LFPL01000000, and consists of
            sequences LFPL01000001-LFPL01000084.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 210.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:35:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,604
            CDSs (total)                      :: 3,550
            Genes (coding)                    :: 3,477
            CDSs (with protein)               :: 3,477
            Genes (RNA)                       :: 54
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 29 of 73
            Pseudo Genes (incomplete)         :: 48 of 73
            Pseudo Genes (internal stop)      :: 18 of 73
            Pseudo Genes (multiple problems)  :: 17 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3869437
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="Mauritius"
                     /serotype="A"
                     /isolation_source="fish (foodborne isolate)"
                     /db_xref="taxon:1491"
                     /geo_loc_name="Mauritius"
                     /subtype="A2"
                     /subgroup="Group I"
WGS         LFPL01000001-LFPL01000084
WGS_SCAFLD  NZ_LFPL01000001-NZ_LFPL01000084
//
LOCUS       NZ_LFOO01000000      3777532 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain ATCC 449, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFOO00000000
VERSION     NZ_LFOO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779947
            Assembly: GCF_001573315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3777532)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3777532)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFOO00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFOO00000000.  This version of the project
            (01) has the accession number NZ_LFOO01000000, and consists of
            sequences LFOO01000001-LFOO01000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 91.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,538
            CDSs (total)                      :: 3,478
            Genes (coding)                    :: 3,413
            CDSs (with protein)               :: 3,413
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 24 of 65
            Pseudo Genes (incomplete)         :: 43 of 65
            Pseudo Genes (internal stop)      :: 9 of 65
            Pseudo Genes (multiple problems)  :: 9 of 65
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3777532
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="ATCC 449"
                     /serotype="A"
                     /culture_collection="ATCC:449"
                     /db_xref="taxon:1491"
                     /subtype="A1"
                     /subgroup="Group I"
WGS         LFOO01000001-LFOO01000065
WGS_SCAFLD  NZ_LFOO01000001-NZ_LFOO01000065
//
LOCUS       NZ_LFOL01000000      3898546 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain ATCC 17843 (B5), whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFOL00000000
VERSION     NZ_LFOL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779986
            Assembly: GCF_001573235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3898546)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3898546)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFOL00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFOL00000000.  This version of the project
            (01) has the accession number NZ_LFOL01000000, and consists of
            sequences LFOL01000001-LFOL01000079.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 110.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,698
            CDSs (total)                      :: 3,639
            Genes (coding)                    :: 3,565
            CDSs (with protein)               :: 3,565
            Genes (RNA)                       :: 59
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 27 of 74
            Pseudo Genes (incomplete)         :: 46 of 74
            Pseudo Genes (internal stop)      :: 19 of 74
            Pseudo Genes (multiple problems)  :: 15 of 74
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3898546
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="ATCC 17843 (B5)"
                     /serotype="B"
                     /culture_collection="ATCC:17843 (B5)"
                     /db_xref="taxon:1491"
                     /subtype="B2"
                     /subgroup="Group I"
WGS         LFOL01000001-LFOL01000079
WGS_SCAFLD  NZ_LFOL01000001-NZ_LFOL01000079
//
LOCUS       NZ_AQKM01000000      3301072 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis UK37/05, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AQKM00000000
VERSION     NZ_AQKM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00811222
            Assembly: GCF_000370865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis UK37/05
  ORGANISM  Brucella melitensis UK37/05
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3301072)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Brucella melitensis UK37/05
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3301072)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQKM00000000.1.
            The Brucella melitensis UK37/05 whole genome shotgun (WGS) project
            has the project accession NZ_AQKM00000000.  This version of the
            project (01) has the accession number NZ_AQKM01000000, and consists
            of sequences AQKM01000001-AQKM01000011.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R41689
            Assembly Name         :: Bruc_meli_UK37_05_V1
            Genome Coverage       :: 123.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000370865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,244
            CDSs (total)                      :: 3,180
            Genes (coding)                    :: 3,017
            CDSs (with protein)               :: 3,017
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 106 of 163
            Pseudo Genes (incomplete)         :: 33 of 163
            Pseudo Genes (internal stop)      :: 42 of 163
            Pseudo Genes (multiple problems)  :: 16 of 163
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3301072
                     /organism="Brucella melitensis UK37/05"
                     /mol_type="genomic DNA"
                     /strain="UK37/05"
                     /host="Homo sapiens"
                     /db_xref="taxon:1160216"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2005"
WGS         AQKM01000001-AQKM01000011
WGS_SCAFLD  NZ_KB850603-NZ_KB850612
//
LOCUS       NZ_AQNO01000000      3232427 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis UK22/06, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AQNO00000000
VERSION     NZ_AQNO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00811219
            Assembly: GCF_000366585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis UK22/06
  ORGANISM  Brucella melitensis UK22/06
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3232427)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Brucella melitensis UK22/06
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3232427)
  AUTHORS   Ward,D., Whatmore,A., Skuce,R., Walker,B., Young,S.K., Zeng,Q.,
            Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L.,
            Arachchi,H.M., Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowan,C., Murphy,C., Neiman,D., Pearson,M.,
            Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AQNO00000000.1.
            The Brucella melitensis UK22/06 whole genome shotgun (WGS) project
            has the project accession NZ_AQNO00000000.  This version of the
            project (01) has the accession number NZ_AQNO01000000, and consists
            of sequences AQNO01000001-AQNO01000012.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R41689
            Assembly Name         :: Bruc_meli_UK22_06_V1
            Genome Coverage       :: 171.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000366585.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,181
            CDSs (total)                      :: 3,119
            Genes (coding)                    :: 2,955
            CDSs (with protein)               :: 2,955
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 164
            CDSs (without protein)            :: 164
            Pseudo Genes (ambiguous residues) :: 0 of 164
            Pseudo Genes (frameshifted)       :: 109 of 164
            Pseudo Genes (incomplete)         :: 33 of 164
            Pseudo Genes (internal stop)      :: 43 of 164
            Pseudo Genes (multiple problems)  :: 19 of 164
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3232427
                     /organism="Brucella melitensis UK22/06"
                     /mol_type="genomic DNA"
                     /strain="UK22/06"
                     /host="Homo sapiens"
                     /db_xref="taxon:1160221"
                     /geo_loc_name="Somalia"
                     /collection_date="2006"
WGS         AQNO01000001-AQNO01000012
WGS_SCAFLD  NZ_AQNO01000001-NZ_AQNO01000012
//
LOCUS       NZ_LFQV01000000      3920281 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium botulinum strain CDC 795, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LFQV00000000
VERSION     NZ_LFQV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03779987
            Assembly: GCF_001573555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium botulinum
  ORGANISM  Clostridium botulinum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium; Clostridium botulinum group.
REFERENCE   1  (bases 1 to 3920281)
  AUTHORS   Williamson,C.H., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Comparative genomic analyses reveal broad diversity in
            botulinum-toxin-producing Clostridia
  JOURNAL   BMC Genomics 17, 180 (2016)
   PUBMED   26939550
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3920281)
  AUTHORS   Williamson,C.H.D., Sahl,J.W., Smith,T.J., Xie,G., Foley,B.T.,
            Smith,L.A., Fernandez,R.A., Lindstrom,M., Korkeala,H., Keim,P.,
            Foster,J. and Hill,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2015) Center for Microbial Genetics and Genomics,
            Northern Arizona University, 1298 S Knoles Drive, Flagstaff, AZ
            86011-4073, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFQV00000000.1.
            The Clostridium botulinum whole genome shotgun (WGS) project has
            the project accession NZ_LFQV00000000.  This version of the project
            (01) has the accession number NZ_LFQV01000000, and consists of
            sequences LFQV01000001-LFQV01000097.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2014
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001573555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:43:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,712
            CDSs (total)                      :: 3,654
            Genes (coding)                    :: 3,588
            CDSs (with protein)               :: 3,588
            Genes (RNA)                       :: 58
            rRNAs                             :: 6, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 22 of 66
            Pseudo Genes (incomplete)         :: 39 of 66
            Pseudo Genes (internal stop)      :: 21 of 66
            Pseudo Genes (multiple problems)  :: 13 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920281
                     /organism="Clostridium botulinum"
                     /mol_type="genomic DNA"
                     /strain="CDC 795"
                     /serotype="B"
                     /db_xref="taxon:1491"
                     /geo_loc_name="USA: Michigan"
                     /subtype="B3"
                     /subgroup="Group I"
WGS         LFQV01000001-LFQV01000097
WGS_SCAFLD  NZ_LFQV01000001-NZ_LFQV01000097
//
LOCUS       NZ_UARH01000000      6010505 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain NCTC13035, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UARH00000000
VERSION     NZ_UARH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA4530646
            Assembly: GCF_900447025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1
  AUTHORS   Doyle,S.
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2018) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UARH00000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_UARH00000000.  This version of the project
            (01) has the accession number NZ_UARH01000000, and consists of
            sequences UARH01000001-UARH01000017.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900447025.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:35:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,424
            CDSs (total)                      :: 5,273
            Genes (coding)                    :: 5,193
            CDSs (with protein)               :: 5,193
            Genes (RNA)                       :: 151
            rRNAs                             :: 17, 17, 17 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 38 of 80
            Pseudo Genes (incomplete)         :: 40 of 80
            Pseudo Genes (internal stop)      :: 13 of 80
            Pseudo Genes (multiple problems)  :: 11 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6010505
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="NCTC13035"
                     /serovar="not available: to be reported later"
                     /isolation_source="not available: to be reported later"
                     /culture_collection="NCTC:13035"
                     /type_material="type strain of Clostridium beijerinckii
                     Donker 1926 (Approved Lists 1980)"
                     /db_xref="taxon:1520"
                     /collection_date="1900/1980"
WGS         UARH01000001-UARH01000017
WGS_SCAFLD  NZ_UARH01000001-NZ_UARH01000017
//
LOCUS       NZ_JABXWN010000000   4517236 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium butyricum strain HYCB, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JABXWN000000000
VERSION     NZ_JABXWN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15338493
            Assembly: GCF_013377675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium butyricum
  ORGANISM  Clostridium butyricum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 4517236)
  AUTHORS   Yi,H.
  TITLE     Clostridium butyricum HYCB,genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4517236)
  AUTHORS   Yi,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2020) Huazhong Agricultural University, State Key
            Laboratory of agricultural microbiology, No. 1, Shizishan street,
            Nanhu, Wuhan, Hubei 430070, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABXWN000000000.1.
            The Clostridium butyricum whole genome shotgun (WGS) project has
            the project accession NZ_JABXWN000000000.  This version of the
            project (01) has the accession number NZ_JABXWN010000000, and
            consists of sequences JABXWN010000001-JABXWN010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013377675.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:19:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,133
            CDSs (total)                      :: 4,027
            Genes (coding)                    :: 3,986
            CDSs (with protein)               :: 3,986
            Genes (RNA)                       :: 106
            rRNAs                             :: 8, 3, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 3, 8 (16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 9 of 41
            Pseudo Genes (incomplete)         :: 28 of 41
            Pseudo Genes (internal stop)      :: 5 of 41
            Pseudo Genes (multiple problems)  :: 1 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4517236
                     /organism="Clostridium butyricum"
                     /mol_type="genomic DNA"
                     /strain="HYCB"
                     /isolation_source="gut"
                     /host="chicken"
                     /db_xref="taxon:1492"
                     /geo_loc_name="China:Hubei"
                     /collection_date="2017-06"
WGS         JABXWN010000001-JABXWN010000070
WGS_SCAFLD  NZ_JABXWN010000001-NZ_JABXWN010000070
//
LOCUS       NZ_JABSZZ010000000   6140147 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ279, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSZZ000000000
VERSION     NZ_JABSZZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09072287
            Assembly: GCF_013296265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6140147)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6140147)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSZZ000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSZZ000000000.  This version of the
            project (01) has the accession number NZ_JABSZZ010000000, and
            consists of sequence JABSZZ010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 84.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:21:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,504
            CDSs (total)                      :: 5,355
            Genes (coding)                    :: 5,268
            CDSs (with protein)               :: 5,268
            Genes (RNA)                       :: 149
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 45 of 87
            Pseudo Genes (incomplete)         :: 42 of 87
            Pseudo Genes (internal stop)      :: 11 of 87
            Pseudo Genes (multiple problems)  :: 9 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6140147
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ279"
                     /db_xref="taxon:1520"
WGS         JABSZZ010000001
WGS_SCAFLD  NZ_JABSZZ010000001
//
LOCUS       NZ_JABSZA010000000   6151989 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ165, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSZA000000000
VERSION     NZ_JABSZA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09065105
            Assembly: GCF_013295745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6151989)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6151989)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSZA000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSZA000000000.  This version of the
            project (01) has the accession number NZ_JABSZA010000000, and
            consists of sequence JABSZA010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 80.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013295745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:21:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,532
            CDSs (total)                      :: 5,380
            Genes (coding)                    :: 5,296
            CDSs (with protein)               :: 5,296
            Genes (RNA)                       :: 152
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 44 of 84
            Pseudo Genes (incomplete)         :: 41 of 84
            Pseudo Genes (internal stop)      :: 9 of 84
            Pseudo Genes (multiple problems)  :: 9 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6151989
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ165"
                     /db_xref="taxon:1520"
WGS         JABSZA010000001
WGS_SCAFLD  NZ_JABSZA010000001
//
LOCUS       NZ_JABSXE010000000   6139183 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ110, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSXE000000000
VERSION     NZ_JABSXE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09070770
            Assembly: GCF_013294765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6139183)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6139183)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSXE000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSXE000000000.  This version of the
            project (01) has the accession number NZ_JABSXE010000000, and
            consists of sequence JABSXE010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 98.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013294765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:20:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,503
            CDSs (total)                      :: 5,354
            Genes (coding)                    :: 5,270
            CDSs (with protein)               :: 5,270
            Genes (RNA)                       :: 149
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 41 of 84
            Pseudo Genes (incomplete)         :: 43 of 84
            Pseudo Genes (internal stop)      :: 12 of 84
            Pseudo Genes (multiple problems)  :: 10 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6139183
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ110"
                     /db_xref="taxon:1520"
WGS         JABSXE010000001
WGS_SCAFLD  NZ_JABSXE010000001
//
LOCUS       NZ_JABTER010000000   6146138 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ129, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTER000000000
VERSION     NZ_JABTER000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09074851
            Assembly: GCF_013297265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6146138)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6146138)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTER000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTER000000000.  This version of the
            project (01) has the accession number NZ_JABTER010000000, and
            consists of sequences JABTER010000001-JABTER010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 80.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013297265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:23:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,513
            CDSs (total)                      :: 5,359
            Genes (coding)                    :: 5,279
            CDSs (with protein)               :: 5,279
            Genes (RNA)                       :: 154
            rRNAs                             :: 19, 17, 18 (5S, 16S, 23S)
            complete rRNAs                    :: 18, 17, 17 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 38 of 80
            Pseudo Genes (incomplete)         :: 42 of 80
            Pseudo Genes (internal stop)      :: 11 of 80
            Pseudo Genes (multiple problems)  :: 9 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6146138
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ129"
                     /db_xref="taxon:1520"
WGS         JABTER010000001-JABTER010000002
WGS_SCAFLD  NZ_JABTER010000001-NZ_JABTER010000002
//
LOCUS       NZ_JABTBC010000000   6129430 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ168, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTBC000000000
VERSION     NZ_JABTBC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12025010
            Assembly: GCF_013296805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6129430)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6129430)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTBC000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTBC000000000.  This version of the
            project (01) has the accession number NZ_JABTBC010000000, and
            consists of sequences JABTBC010000001-JABTBC010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 210.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:25:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,485
            CDSs (total)                      :: 5,339
            Genes (coding)                    :: 5,278
            CDSs (with protein)               :: 5,278
            Genes (RNA)                       :: 146
            rRNAs                             :: 15, 17, 18 (5S, 16S, 23S)
            complete rRNAs                    :: 15, 16, 13 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 5 (16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 19 of 61
            Pseudo Genes (incomplete)         :: 41 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6129430
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ168"
                     /db_xref="taxon:1520"
WGS         JABTBC010000001-JABTBC010000004
WGS_SCAFLD  NZ_JABTBC010000001-NZ_JABTBC010000004
//
LOCUS       NZ_JABTAY010000000   6173601 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ082, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTAY000000000
VERSION     NZ_JABTAY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09828877
            Assembly: GCF_013296715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6173601)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6173601)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTAY000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTAY000000000.  This version of the
            project (01) has the accession number NZ_JABTAY010000000, and
            consists of sequences JABTAY010000001-JABTAY010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 94.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,523
            CDSs (total)                      :: 5,361
            Genes (coding)                    :: 5,295
            CDSs (with protein)               :: 5,295
            Genes (RNA)                       :: 162
            rRNAs                             :: 21, 20, 21 (5S, 16S, 23S)
            complete rRNAs                    :: 21, 20, 19 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 23 of 66
            Pseudo Genes (incomplete)         :: 44 of 66
            Pseudo Genes (internal stop)      :: 11 of 66
            Pseudo Genes (multiple problems)  :: 10 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6173601
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ082"
                     /db_xref="taxon:1520"
WGS         JABTAY010000001-JABTAY010000004
WGS_SCAFLD  NZ_JABTAY010000001-NZ_JABTAY010000004
//
LOCUS       NZ_JABTDZ010000000   6145797 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ043, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTDZ000000000
VERSION     NZ_JABTDZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05878493
            Assembly: GCF_013297085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6145797)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6145797)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTDZ000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTDZ000000000.  This version of the
            project (01) has the accession number NZ_JABTDZ010000000, and
            consists of sequences JABTDZ010000001-JABTDZ010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 93.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013297085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:25:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,484
            CDSs (total)                      :: 5,333
            Genes (coding)                    :: 5,266
            CDSs (with protein)               :: 5,266
            Genes (RNA)                       :: 151
            rRNAs                             :: 17, 17, 17 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 17, 16 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 25 of 67
            Pseudo Genes (incomplete)         :: 42 of 67
            Pseudo Genes (internal stop)      :: 11 of 67
            Pseudo Genes (multiple problems)  :: 9 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6145797
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ043"
                     /db_xref="taxon:1520"
WGS         JABTDZ010000001-JABTDZ010000007
WGS_SCAFLD  NZ_JABTDZ010000001-NZ_JABTDZ010000007
//
LOCUS       NZ_JULD01000000      4999619 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain 980_SSON, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JULD00000000
VERSION     NZ_JULD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03198201
            Assembly: GCF_001067775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 4999619)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4999619)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JULD00000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_JULD00000000.  This version of the project
            (01) has the accession number NZ_JULD01000000, and consists of
            sequences JULD01000001-JULD01000108.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            The organism was changed from 'Shigella sonnei' to 'Citrobacter
            braakii' in July 2016.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_001067775.1
            Current Name        :: Citrobacter braakii
            Previous Name       :: Shigella sonnei
            Date Updated        :: 2016-07-12
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. PROXYTYPE genome for current name
            A1 Genome (subject) :: GCA_000786275.1
            A1 Name             :: Citrobacter braakii
            A1 ANI              :: 99.06766%
            A1 Query Coverage   :: 90%
            A1 Subject Coverage :: 90%
            Analysis 2 (A2)     :: Query vs. PROXYTYPE genome for previous name
            A2 Genome (subject) :: GCA_000268045.1
            A2 Name             :: Shigella sonnei
            A2 ANI              :: 83.28214%
            A2 Query Coverage   :: 40%
            A2 Subject Coverage :: 40%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 15x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001067775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:53:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,833
            CDSs (total)                      :: 4,797
            Genes (coding)                    :: 4,694
            CDSs (with protein)               :: 4,694
            Genes (RNA)                       :: 36
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 27
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 28 of 103
            Pseudo Genes (incomplete)         :: 75 of 103
            Pseudo Genes (internal stop)      :: 17 of 103
            Pseudo Genes (multiple problems)  :: 15 of 103
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4999619
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="980_SSON"
                     /host="Homo sapiens"
                     /db_xref="taxon:57706"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JULD01000001-JULD01000108
WGS_SCAFLD  NZ_JULD01000001-NZ_JULD01000108
//
LOCUS       NZ_JABTAP010000000   6181622 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ144, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTAP000000000
VERSION     NZ_JABTAP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09075517
            Assembly: GCF_013296555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6181622)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6181622)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTAP000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTAP000000000.  This version of the
            project (01) has the accession number NZ_JABTAP010000000, and
            consists of sequences JABTAP010000001-JABTAP010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 65.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,536
            CDSs (total)                      :: 5,365
            Genes (coding)                    :: 5,283
            CDSs (with protein)               :: 5,283
            Genes (RNA)                       :: 171
            rRNAs                             :: 23, 20, 23 (5S, 16S, 23S)
            complete rRNAs                    :: 23, 20, 19 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 99
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 40 of 82
            Pseudo Genes (incomplete)         :: 42 of 82
            Pseudo Genes (internal stop)      :: 13 of 82
            Pseudo Genes (multiple problems)  :: 12 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181622
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ144"
                     /db_xref="taxon:1520"
WGS         JABTAP010000001-JABTAP010000005
WGS_SCAFLD  NZ_JABTAP010000001-NZ_JABTAP010000005
//
LOCUS       NZ_JABTES010000000   6025891 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ193, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTES000000000
VERSION     NZ_JABTES000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12024901
            Assembly: GCF_013297305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6025891)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6025891)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTES000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTES000000000.  This version of the
            project (01) has the accession number NZ_JABTES010000000, and
            consists of sequences JABTES010000001-JABTES010000056.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 249.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013297305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:22:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,424
            CDSs (total)                      :: 5,311
            Genes (coding)                    :: 5,248
            CDSs (with protein)               :: 5,248
            Genes (RNA)                       :: 113
            rRNAs                             :: 13, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 6, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 19 of 63
            Pseudo Genes (incomplete)         :: 43 of 63
            Pseudo Genes (internal stop)      :: 10 of 63
            Pseudo Genes (multiple problems)  :: 8 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6025891
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ193"
                     /db_xref="taxon:1520"
WGS         JABTES010000001-JABTES010000056
WGS_SCAFLD  NZ_JABTES010000001-NZ_JABTES010000056
//
LOCUS       NZ_JABTAF010000000   5952235 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ317, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTAF000000000
VERSION     NZ_JABTAF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09072048
            Assembly: GCF_013296385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 5952235)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 5952235)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTAF000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTAF000000000.  This version of the
            project (01) has the accession number NZ_JABTAF010000000, and
            consists of sequences JABTAF010000001-JABTAF010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 142.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:26:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,324
            CDSs (total)                      :: 5,176
            Genes (coding)                    :: 5,110
            CDSs (with protein)               :: 5,110
            Genes (RNA)                       :: 148
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 22 of 66
            Pseudo Genes (incomplete)         :: 41 of 66
            Pseudo Genes (internal stop)      :: 10 of 66
            Pseudo Genes (multiple problems)  :: 7 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5952235
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ317"
                     /db_xref="taxon:1520"
WGS         JABTAF010000001-JABTAF010000002
WGS_SCAFLD  NZ_JABTAF010000001-NZ_JABTAF010000002
//
LOCUS       NZ_JABSXY010000000   6153422 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ228.2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSXY000000000
VERSION     NZ_JABSXY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09070733
            Assembly: GCF_013295185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6153422)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6153422)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSXY000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSXY000000000.  This version of the
            project (01) has the accession number NZ_JABSXY010000000, and
            consists of sequences JABSXY010000001-JABSXY010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 89.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013295185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:18:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,514
            CDSs (total)                      :: 5,357
            Genes (coding)                    :: 5,288
            CDSs (with protein)               :: 5,288
            Genes (RNA)                       :: 157
            rRNAs                             :: 19, 17, 20 (5S, 16S, 23S)
            complete rRNAs                    :: 19, 17, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (23S)
            tRNAs                             :: 95
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 26 of 69
            Pseudo Genes (incomplete)         :: 43 of 69
            Pseudo Genes (internal stop)      :: 12 of 69
            Pseudo Genes (multiple problems)  :: 10 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6153422
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ228.2"
                     /db_xref="taxon:1520"
WGS         JABSXY010000001-JABSXY010000004
WGS_SCAFLD  NZ_JABSXY010000001-NZ_JABSXY010000004
//
LOCUS       NZ_JABSZH010000000   6118527 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ176, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSZH000000000
VERSION     NZ_JABSZH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09828871
            Assembly: GCF_013295905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6118527)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6118527)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSZH000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSZH000000000.  This version of the
            project (01) has the accession number NZ_JABSZH010000000, and
            consists of sequences JABSZH010000001-JABSZH010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 167.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013295905.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:26:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,468
            CDSs (total)                      :: 5,307
            Genes (coding)                    :: 5,245
            CDSs (with protein)               :: 5,245
            Genes (RNA)                       :: 161
            rRNAs                             :: 21, 18, 18 (5S, 16S, 23S)
            complete rRNAs                    :: 21, 17, 17 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 22 of 62
            Pseudo Genes (incomplete)         :: 39 of 62
            Pseudo Genes (internal stop)      :: 11 of 62
            Pseudo Genes (multiple problems)  :: 8 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6118527
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ176"
                     /db_xref="taxon:1520"
WGS         JABSZH010000001-JABSZH010000005
WGS_SCAFLD  NZ_JABSZH010000001-NZ_JABSZH010000005
//
LOCUS       NZ_JABTDY010000000   6136338 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ009, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTDY000000000
VERSION     NZ_JABTDY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05878287
            Assembly: GCF_013297065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6136338)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6136338)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTDY000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTDY000000000.  This version of the
            project (01) has the accession number NZ_JABTDY010000000, and
            consists of sequences JABTDY010000001-JABTDY010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 87.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013297065.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:27:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,471
            CDSs (total)                      :: 5,322
            Genes (coding)                    :: 5,261
            CDSs (with protein)               :: 5,261
            Genes (RNA)                       :: 149
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 19 of 61
            Pseudo Genes (incomplete)         :: 41 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6136338
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ009"
                     /db_xref="taxon:1520"
WGS         JABTDY010000001-JABTDY010000004
WGS_SCAFLD  NZ_JABTDY010000001-NZ_JABTDY010000004
//
LOCUS       NZ_JABSYN010000000   6140009 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ255, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSYN000000000
VERSION     NZ_JABSYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09070626
            Assembly: GCF_013295505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6140009)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6140009)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSYN000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSYN000000000.  This version of the
            project (01) has the accession number NZ_JABSYN010000000, and
            consists of sequence JABSYN010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 113.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013295505.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:27:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,517
            CDSs (total)                      :: 5,368
            Genes (coding)                    :: 5,287
            CDSs (with protein)               :: 5,287
            Genes (RNA)                       :: 149
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 36 of 81
            Pseudo Genes (incomplete)         :: 45 of 81
            Pseudo Genes (internal stop)      :: 12 of 81
            Pseudo Genes (multiple problems)  :: 10 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6140009
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ255"
                     /db_xref="taxon:1520"
WGS         JABSYN010000001
WGS_SCAFLD  NZ_JABSYN010000001
//
LOCUS       NZ_JABAHJ010000000   6009595 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ157, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABAHJ000000000
VERSION     NZ_JABAHJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14591181
            Assembly: GCF_014230895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6009595)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6009595)
  AUTHORS   Brown,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2020) Computational Biology, LanzaTech Inc, 8045
            Lamon Avenue, Suite 400, Skokie, IL 60077, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABAHJ000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABAHJ000000000.  This version of the
            project (01) has the accession number NZ_JABAHJ010000000, and
            consists of sequences JABAHJ010000001-JABAHJ010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Dr. Steven Brown, 8045 Lamon
            Avenue, Skokie, Illinois, 60077, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 126.1687275x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014230895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:28:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,372
            CDSs (total)                      :: 5,310
            Genes (coding)                    :: 5,243
            CDSs (with protein)               :: 5,243
            Genes (RNA)                       :: 62
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 20 of 67
            Pseudo Genes (incomplete)         :: 47 of 67
            Pseudo Genes (internal stop)      :: 11 of 67
            Pseudo Genes (multiple problems)  :: 9 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6009595
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ157"
                     /isolation_source="Industrial ABE fermentation"
                     /db_xref="taxon:1520"
                     /collection_date="2007"
                     /collected_by="LanzaTech Inc"
WGS         JABAHJ010000001-JABAHJ010000078
WGS_SCAFLD  NZ_JABAHJ010000001-NZ_JABAHJ010000078
//
LOCUS       NZ_JABSYG010000000   6139961 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ241, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSYG000000000
VERSION     NZ_JABSYG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09070620
            Assembly: GCF_013295345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6139961)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6139961)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSYG000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSYG000000000.  This version of the
            project (01) has the accession number NZ_JABSYG010000000, and
            consists of sequence JABSYG010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 160.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013295345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,515
            CDSs (total)                      :: 5,366
            Genes (coding)                    :: 5,282
            CDSs (with protein)               :: 5,282
            Genes (RNA)                       :: 149
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 40 of 84
            Pseudo Genes (incomplete)         :: 45 of 84
            Pseudo Genes (internal stop)      :: 11 of 84
            Pseudo Genes (multiple problems)  :: 10 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6139961
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ241"
                     /db_xref="taxon:1520"
WGS         JABSYG010000001
WGS_SCAFLD  NZ_JABSYG010000001
//
LOCUS       NZ_JABSZQ010000000   6138400 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ212, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSZQ000000000
VERSION     NZ_JABSZQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09065111
            Assembly: GCF_013296055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6138400)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6138400)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSZQ000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSZQ000000000.  This version of the
            project (01) has the accession number NZ_JABSZQ010000000, and
            consists of sequences JABSZQ010000001-JABSZQ010000002.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 76.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:34:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,511
            CDSs (total)                      :: 5,362
            Genes (coding)                    :: 5,276
            CDSs (with protein)               :: 5,276
            Genes (RNA)                       :: 149
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 41 of 86
            Pseudo Genes (incomplete)         :: 45 of 86
            Pseudo Genes (internal stop)      :: 12 of 86
            Pseudo Genes (multiple problems)  :: 10 of 86
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6138400
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ212"
                     /db_xref="taxon:1520"
WGS         JABSZQ010000001-JABSZQ010000002
WGS_SCAFLD  NZ_JABSZQ010000001-NZ_JABSZQ010000002
//
LOCUS       NZ_JACAZW010000000   6135280 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ201, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACAZW000000000
VERSION     NZ_JACAZW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09065109
            Assembly: GCF_013407485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6135280)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6135280)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACAZW000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JACAZW000000000.  This version of the
            project (01) has the accession number NZ_JACAZW010000000, and
            consists of sequences JACAZW010000001-JACAZW010000008.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 251.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013407485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,494
            CDSs (total)                      :: 5,348
            Genes (coding)                    :: 5,282
            CDSs (with protein)               :: 5,282
            Genes (RNA)                       :: 146
            rRNAs                             :: 16, 15, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 16, 15, 15 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 21 of 66
            Pseudo Genes (incomplete)         :: 45 of 66
            Pseudo Genes (internal stop)      :: 11 of 66
            Pseudo Genes (multiple problems)  :: 9 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6135280
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ201"
                     /db_xref="taxon:1520"
WGS         JACAZW010000001-JACAZW010000008
WGS_SCAFLD  NZ_JACAZW010000001-NZ_JACAZW010000008
//
LOCUS       NZ_JACBNO010000000   5981265 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ152, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACBNO000000000
VERSION     NZ_JACBNO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12025009
            Assembly: GCF_013410845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 5981265)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 5981265)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACBNO000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JACBNO000000000.  This version of the
            project (01) has the accession number NZ_JACBNO010000000, and
            consists of sequences JACBNO010000001-JACBNO010000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013410845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,370
            CDSs (total)                      :: 5,261
            Genes (coding)                    :: 5,195
            CDSs (with protein)               :: 5,195
            Genes (RNA)                       :: 109
            rRNAs                             :: 13, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 6, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 19 of 66
            Pseudo Genes (incomplete)         :: 46 of 66
            Pseudo Genes (internal stop)      :: 10 of 66
            Pseudo Genes (multiple problems)  :: 8 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981265
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ152"
                     /db_xref="taxon:1520"
WGS         JACBNO010000001-JACBNO010000066
WGS_SCAFLD  NZ_JACBNO010000001-NZ_JACBNO010000066
//
LOCUS       NZ_JACERB010000000   6022236 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ194, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACERB000000000
VERSION     NZ_JACERB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13170871
            Assembly: GCF_013760815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6022236)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6022236)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACERB000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JACERB000000000.  This version of the
            project (01) has the accession number NZ_JACERB010000000, and
            consists of sequences JACERB010000001-JACERB010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 249.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013760815.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:33:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,418
            CDSs (total)                      :: 5,316
            Genes (coding)                    :: 5,250
            CDSs (with protein)               :: 5,250
            Genes (RNA)                       :: 102
            rRNAs                             :: 13, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 6, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 19 of 66
            Pseudo Genes (incomplete)         :: 46 of 66
            Pseudo Genes (internal stop)      :: 10 of 66
            Pseudo Genes (multiple problems)  :: 8 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6022236
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ194"
                     /db_xref="taxon:1520"
WGS         JACERB010000001-JACERB010000060
WGS_SCAFLD  NZ_JACERB010000001-NZ_JACERB010000060
//
LOCUS       NZ_JABSZL010000000   6140038 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ200, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSZL000000000
VERSION     NZ_JABSZL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09065475
            Assembly: GCF_013295955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6140038)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6140038)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSZL000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSZL000000000.  This version of the
            project (01) has the accession number NZ_JABSZL010000000, and
            consists of sequence JABSZL010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 87.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013295955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:30:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,508
            CDSs (total)                      :: 5,359
            Genes (coding)                    :: 5,278
            CDSs (with protein)               :: 5,278
            Genes (RNA)                       :: 149
            rRNAs                             :: 17, 16, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 17, 16, 16 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 38 of 81
            Pseudo Genes (incomplete)         :: 44 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 10 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6140038
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ200"
                     /db_xref="taxon:1520"
WGS         JABSZL010000001
WGS_SCAFLD  NZ_JABSZL010000001
//
LOCUS       NZ_JABSZW010000000   6123011 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ223, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSZW000000000
VERSION     NZ_JABSZW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09065401
            Assembly: GCF_013296145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6123011)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6123011)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSZW000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSZW000000000.  This version of the
            project (01) has the accession number NZ_JABSZW010000000, and
            consists of sequences JABSZW010000001-JABSZW010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 96.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296145.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,513
            CDSs (total)                      :: 5,370
            Genes (coding)                    :: 5,285
            CDSs (with protein)               :: 5,285
            Genes (RNA)                       :: 143
            rRNAs                             :: 14, 16, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 14, 14 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 40 of 85
            Pseudo Genes (incomplete)         :: 45 of 85
            Pseudo Genes (internal stop)      :: 11 of 85
            Pseudo Genes (multiple problems)  :: 9 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6123011
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ223"
                     /db_xref="taxon:1520"
WGS         JABSZW010000001-JABSZW010000004
WGS_SCAFLD  NZ_JABSZW010000001-NZ_JABSZW010000004
//
LOCUS       NZ_JABSYF010000000   6158315 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ239, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABSYF000000000
VERSION     NZ_JABSYF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09070618
            Assembly: GCF_013295305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6158315)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6158315)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABSYF000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABSYF000000000.  This version of the
            project (01) has the accession number NZ_JABSYF010000000, and
            consists of sequences JABSYF010000001-JABSYF010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 117.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013295305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:34:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,537
            CDSs (total)                      :: 5,377
            Genes (coding)                    :: 5,294
            CDSs (with protein)               :: 5,294
            Genes (RNA)                       :: 160
            rRNAs                             :: 20, 18, 20 (5S, 16S, 23S)
            complete rRNAs                    :: 20, 17, 16 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 4 (16S, 23S)
            tRNAs                             :: 96
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 37 of 83
            Pseudo Genes (incomplete)         :: 45 of 83
            Pseudo Genes (internal stop)      :: 11 of 83
            Pseudo Genes (multiple problems)  :: 9 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6158315
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ239"
                     /db_xref="taxon:1520"
WGS         JABSYF010000001-JABSYF010000005
WGS_SCAFLD  NZ_JABSYF010000001-NZ_JABSYF010000005
//
LOCUS       NZ_JACAZO010000000   5976247 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ079, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACAZO000000000
VERSION     NZ_JACAZO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06296157
            Assembly: GCF_013407365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 5976247)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 5976247)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACAZO000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JACAZO000000000.  This version of the
            project (01) has the accession number NZ_JACAZO010000000, and
            consists of sequences JACAZO010000001-JACAZO010000005.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 2.3.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 164.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013407365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:34:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,347
            CDSs (total)                      :: 5,192
            Genes (coding)                    :: 5,128
            CDSs (with protein)               :: 5,128
            Genes (RNA)                       :: 155
            rRNAs                             :: 18, 18, 18 (5S, 16S, 23S)
            complete rRNAs                    :: 18, 17, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 26 of 64
            Pseudo Genes (incomplete)         :: 38 of 64
            Pseudo Genes (internal stop)      :: 8 of 64
            Pseudo Genes (multiple problems)  :: 8 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5976247
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ079"
                     /db_xref="taxon:1520"
WGS         JACAZO010000001-JACAZO010000005
WGS_SCAFLD  NZ_JACAZO010000001-NZ_JACAZO010000005
//
LOCUS       NZ_JACERC010000000   6023825 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ209, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACERC000000000
VERSION     NZ_JACERC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13170381
            Assembly: GCF_013760745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6023825)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6023825)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACERC000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JACERC000000000.  This version of the
            project (01) has the accession number NZ_JACERC010000000, and
            consists of sequences JACERC010000001-JACERC010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 249.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013760745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:34:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,419
            CDSs (total)                      :: 5,318
            Genes (coding)                    :: 5,252
            CDSs (with protein)               :: 5,252
            Genes (RNA)                       :: 101
            rRNAs                             :: 13, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 5, 4, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 18 of 66
            Pseudo Genes (incomplete)         :: 48 of 66
            Pseudo Genes (internal stop)      :: 9 of 66
            Pseudo Genes (multiple problems)  :: 8 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6023825
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ209"
                     /db_xref="taxon:1520"
WGS         JACERC010000001-JACERC010000063
WGS_SCAFLD  NZ_JACERC010000001-NZ_JACERC010000063
//
LOCUS       NZ_JABTAO010000000   6149258 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ143, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTAO000000000
VERSION     NZ_JABTAO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09075516
            Assembly: GCF_013296525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6149258)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6149258)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTAO000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTAO000000000.  This version of the
            project (01) has the accession number NZ_JABTAO010000000, and
            consists of sequence JABTAO010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 66.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:39:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,524
            CDSs (total)                      :: 5,371
            Genes (coding)                    :: 5,288
            CDSs (with protein)               :: 5,288
            Genes (RNA)                       :: 153
            rRNAs                             :: 18, 18, 17 (5S, 16S, 23S)
            complete rRNAs                    :: 18, 16, 17 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 40 of 83
            Pseudo Genes (incomplete)         :: 44 of 83
            Pseudo Genes (internal stop)      :: 11 of 83
            Pseudo Genes (multiple problems)  :: 10 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6149258
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ143"
                     /db_xref="taxon:1520"
WGS         JABTAO010000001
WGS_SCAFLD  NZ_JABTAO010000001
//
LOCUS       NZ_JABTAW010000000   6146078 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ060, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTAW000000000
VERSION     NZ_JABTAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09828876
            Assembly: GCF_013296725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6146078)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6146078)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTAW000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTAW000000000.  This version of the
            project (01) has the accession number NZ_JABTAW010000000, and
            consists of sequence JABTAW010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 120.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:39:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,514
            CDSs (total)                      :: 5,362
            Genes (coding)                    :: 5,275
            CDSs (with protein)               :: 5,275
            Genes (RNA)                       :: 152
            rRNAs                             :: 18, 17, 17 (5S, 16S, 23S)
            complete rRNAs                    :: 18, 17, 17 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 41 of 87
            Pseudo Genes (incomplete)         :: 45 of 87
            Pseudo Genes (internal stop)      :: 14 of 87
            Pseudo Genes (multiple problems)  :: 11 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6146078
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ060"
                     /db_xref="taxon:1520"
WGS         JABTAW010000001
WGS_SCAFLD  NZ_JABTAW010000001
//
LOCUS       NZ_JABTBF010000000   6159994 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ214, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABTBF000000000
VERSION     NZ_JABTBF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12025788
            Assembly: GCF_013296865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6159994)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6159994)
  AUTHORS   Brown,S., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABTBF000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABTBF000000000.  This version of the
            project (01) has the accession number NZ_JABTBF010000000, and
            consists of sequences JABTBF010000001-JABTBF010000004.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtanalysis 2.3.0_p5, HGAP v. 3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 123.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013296865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:30:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,515
            CDSs (total)                      :: 5,354
            Genes (coding)                    :: 5,289
            CDSs (with protein)               :: 5,289
            Genes (RNA)                       :: 161
            rRNAs                             :: 19, 18, 20 (5S, 16S, 23S)
            complete rRNAs                    :: 19, 17, 16 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 4 (16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 22 of 65
            Pseudo Genes (incomplete)         :: 43 of 65
            Pseudo Genes (internal stop)      :: 11 of 65
            Pseudo Genes (multiple problems)  :: 9 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6159994
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ214"
                     /db_xref="taxon:1520"
WGS         JABTBF010000001-JABTBF010000004
WGS_SCAFLD  NZ_JABTBF010000001-NZ_JABTBF010000004
//
LOCUS       NZ_JABAJE010000000   6004068 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium beijerinckii strain DJ245, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABAJE000000000
VERSION     NZ_JABAJE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14591191
            Assembly: GCF_014231105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium beijerinckii
  ORGANISM  Clostridium beijerinckii
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 6004068)
  AUTHORS   Liew,F.E., Nogle,R., Abdalla,T., Rasor,B.J., Canter,C.,
            Jensen,R.O., Wang,L., Strutz,J., Chirania,P., De Tissera,S.,
            Mueller,A.P., Ruan,Z., Gao,A., Tran,L., Engle,N.L., Bromley,J.C.,
            Daniell,J., Conrado,R., Tschaplinski,T.J., Giannone,R.J.,
            Hettich,R.L., Karim,A.S., Simpson,S.D., Brown,S.D., Leang,C.,
            Jewett,M.C. and Kopke,M.
  TITLE     Carbon-negative production of acetone and isopropanol by gas
            fermentation at industrial pilot scale
  JOURNAL   Nat Biotechnol 40 (3), 335-344 (2022)
   PUBMED   35190685
REFERENCE   2  (bases 1 to 6004068)
  AUTHORS   Brown,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2020) Computational Biology, LanzaTech Inc, 8045
            Lamon Avenue, Suite 400, Skokie, IL 60077, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABAJE000000000.1.
            The Clostridium beijerinckii whole genome shotgun (WGS) project has
            the project accession NZ_JABAJE000000000.  This version of the
            project (01) has the accession number NZ_JABAJE010000000, and
            consists of sequences JABAJE010000001-JABAJE010000148.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Dr. Steven Brown, 8045 Lamon
            Avenue, Skokie, Illinois, 60077, USA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 110.8883728x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014231105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:37:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,371
            CDSs (total)                      :: 5,312
            Genes (coding)                    :: 5,245
            CDSs (with protein)               :: 5,245
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 19 of 67
            Pseudo Genes (incomplete)         :: 47 of 67
            Pseudo Genes (internal stop)      :: 12 of 67
            Pseudo Genes (multiple problems)  :: 9 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6004068
                     /organism="Clostridium beijerinckii"
                     /mol_type="genomic DNA"
                     /strain="DJ245"
                     /isolation_source="Industrial ABE fermentation"
                     /db_xref="taxon:1520"
                     /collection_date="2007"
                     /collected_by="LanzaTech Inc"
WGS         JABAJE010000001-JABAJE010000148
WGS_SCAFLD  NZ_JABAJE010000001-NZ_JABAJE010000148
//
LOCUS       NZ_CAVLFZ010000000   4651644 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium butyricum isolate 365, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAVLFZ000000000
VERSION     NZ_CAVLFZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114598060
            Assembly: GCF_963668855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium butyricum
  ORGANISM  Clostridium butyricum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 4651644)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAVLFZ000000000.1.
            The Clostridium butyricum whole genome shotgun (WGS) project has
            the project accession NZ_CAVLFZ000000000.  This version of the
            project (01) has the accession number NZ_CAVLFZ010000000, and
            consists of sequences CAVLFZ010000001-CAVLFZ010000076.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963668855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:09:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,316
            CDSs (total)                      :: 4,216
            Genes (coding)                    :: 4,167
            CDSs (with protein)               :: 4,167
            Genes (RNA)                       :: 100
            rRNAs                             :: 9, 5, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 9 (5S)
            partial rRNAs                     :: 5, 6 (16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 6 of 49
            Pseudo Genes (incomplete)         :: 40 of 49
            Pseudo Genes (internal stop)      :: 6 of 49
            Pseudo Genes (multiple problems)  :: 3 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4651644
                     /organism="Clostridium butyricum"
                     /mol_type="genomic DNA"
                     /isolate="365"
                     /db_xref="taxon:1492"
WGS         CAVLFZ010000001-CAVLFZ010000076
WGS_SCAFLD  NZ_CAVLFZ010000001-NZ_CAVLFZ010000076
//
LOCUS       NZ_CAVLGK010000000   4459741 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium butyricum isolate 355, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAVLGK000000000
VERSION     NZ_CAVLGK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114598050
            Assembly: GCF_963669015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium butyricum
  ORGANISM  Clostridium butyricum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 4459741)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAVLGK000000000.1.
            The Clostridium butyricum whole genome shotgun (WGS) project has
            the project accession NZ_CAVLGK000000000.  This version of the
            project (01) has the accession number NZ_CAVLGK010000000, and
            consists of sequences CAVLGK010000001-CAVLGK010000085.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963669015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:13:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,101
            CDSs (total)                      :: 4,004
            Genes (coding)                    :: 3,963
            CDSs (with protein)               :: 3,963
            Genes (RNA)                       :: 97
            rRNAs                             :: 9, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 1, 5, 7 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 5 of 41
            Pseudo Genes (incomplete)         :: 34 of 41
            Pseudo Genes (internal stop)      :: 4 of 41
            Pseudo Genes (multiple problems)  :: 2 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4459741
                     /organism="Clostridium butyricum"
                     /mol_type="genomic DNA"
                     /isolate="355"
                     /db_xref="taxon:1492"
WGS         CAVLGK010000001-CAVLGK010000085
WGS_SCAFLD  NZ_CAVLGK010000001-NZ_CAVLGK010000085
//
LOCUS       NZ_CAVLGU010000000   4456960 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium butyricum isolate 384, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAVLGU000000000
VERSION     NZ_CAVLGU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114598079
            Assembly: GCF_963669115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium butyricum
  ORGANISM  Clostridium butyricum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 4456960)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAVLGU000000000.1.
            The Clostridium butyricum whole genome shotgun (WGS) project has
            the project accession NZ_CAVLGU000000000.  This version of the
            project (01) has the accession number NZ_CAVLGU010000000, and
            consists of sequences CAVLGU010000001-CAVLGU010000079.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963669115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:12:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,099
            CDSs (total)                      :: 3,995
            Genes (coding)                    :: 3,957
            CDSs (with protein)               :: 3,957
            Genes (RNA)                       :: 104
            rRNAs                             :: 8, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 5, 7 (16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 5 of 38
            Pseudo Genes (incomplete)         :: 31 of 38
            Pseudo Genes (internal stop)      :: 4 of 38
            Pseudo Genes (multiple problems)  :: 2 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4456960
                     /organism="Clostridium butyricum"
                     /mol_type="genomic DNA"
                     /isolate="384"
                     /db_xref="taxon:1492"
WGS         CAVLGU010000001-CAVLGU010000079
WGS_SCAFLD  NZ_CAVLGU010000001-NZ_CAVLGU010000079
//
LOCUS       NZ_JUYY01000000      5086171 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain 641_SENT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUYY00000000
VERSION     NZ_JUYY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197842
            Assembly: GCF_001065805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5086171)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5086171)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUYY00000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_JUYY00000000.  This version of the project
            (01) has the accession number NZ_JUYY01000000, and consists of
            sequences JUYY01000001-JUYY01000108.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            The organism was changed from 'Salmonella enterica' to 'Citrobacter
            braakii' in May 2016.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_001065805.1
            Current Name        :: Citrobacter braakii
            Previous Name       :: Salmonella enterica
            Date Updated        :: 2016-05-31
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. PROXYTYPE genome for current name
            A1 Genome (subject) :: GCA_000786275.1
            A1 Name             :: Citrobacter braakii
            A1 ANI              :: 99.1255%
            A1 Query Coverage   :: 89%
            A1 Subject Coverage :: 90%
            Analysis 2 (A2)     :: Query vs. PROXYTYPE genome for previous name
            A2 Genome (subject) :: GCA_001558355.1
            A2 Name             :: Salmonella enterica
            A2 ANI              :: 84.03211%
            A2 Query Coverage   :: 38%
            A2 Subject Coverage :: 39%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 20x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001065805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,889
            CDSs (total)                      :: 4,841
            Genes (coding)                    :: 4,751
            CDSs (with protein)               :: 4,751
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 24 of 90
            Pseudo Genes (incomplete)         :: 71 of 90
            Pseudo Genes (internal stop)      :: 13 of 90
            Pseudo Genes (multiple problems)  :: 16 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5086171
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="641_SENT"
                     /host="Homo sapiens"
                     /db_xref="taxon:57706"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUYY01000001-JUYY01000108
WGS_SCAFLD  NZ_JUYY01000001-NZ_JUYY01000108
//
LOCUS       NZ_JZHF01000000      3281768 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis bv. 3 strain BB8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JZHF00000000
VERSION     NZ_JZHF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03381084
            Assembly: GCF_003994015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis bv. 3
  ORGANISM  Brucella melitensis bv. 3
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3281768)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Brucella melitensis BB8 genome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3281768)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2015) National Institute for Communicable Disease
            Control & Prevention, Chinese Center for Disease Control and
            Prevention, P.O. Box 5, Changping, Beijing, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JZHF00000000.1.
            The Brucella melitensis bv. 3 whole genome shotgun (WGS) project
            has the project accession NZ_JZHF00000000.  This version of the
            project (01) has the accession number NZ_JZHF01000000, and consists
            of sequences JZHF01000001-JZHF01000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1504.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003994015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:31:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,223
            CDSs (total)                      :: 3,167
            Genes (coding)                    :: 3,002
            CDSs (with protein)               :: 3,002
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 104 of 165
            Pseudo Genes (incomplete)         :: 37 of 165
            Pseudo Genes (internal stop)      :: 43 of 165
            Pseudo Genes (multiple problems)  :: 17 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3281768
                     /organism="Brucella melitensis bv. 3"
                     /mol_type="genomic DNA"
                     /strain="BB8"
                     /isolation_source="diseased goat"
                     /host="goat"
                     /db_xref="taxon:644340"
                     /geo_loc_name="China: Shandong"
                     /collection_date="1991"
                     /biovar="3"
WGS         JZHF01000001-JZHF01000026
WGS_SCAFLD  NZ_JZHF01000001-NZ_JZHF01000026
//
LOCUS       NZ_JZHI01000000      3283951 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis bv. 3 strain BB4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JZHI00000000
VERSION     NZ_JZHI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03380776
            Assembly: GCF_003993955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis bv. 3
  ORGANISM  Brucella melitensis bv. 3
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3283951)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Brucella melitensis BB4 Genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3283951)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2015) National Institute for Communicable Disease
            Control & Prevention, Chinese Center for Disease Control and
            Prevention, P.O. Box 5, Changping, Beijing, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JZHI00000000.1.
            The Brucella melitensis bv. 3 whole genome shotgun (WGS) project
            has the project accession NZ_JZHI00000000.  This version of the
            project (01) has the accession number NZ_JZHI01000000, and consists
            of sequences JZHI01000001-JZHI01000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 995.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003993955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:32:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,220
            CDSs (total)                      :: 3,165
            Genes (coding)                    :: 3,006
            CDSs (with protein)               :: 3,006
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 102 of 159
            Pseudo Genes (incomplete)         :: 34 of 159
            Pseudo Genes (internal stop)      :: 44 of 159
            Pseudo Genes (multiple problems)  :: 18 of 159
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3283951
                     /organism="Brucella melitensis bv. 3"
                     /mol_type="genomic DNA"
                     /strain="BB4"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:644340"
                     /geo_loc_name="China: NeiMonggal"
                     /collection_date="1957"
                     /biovar="3"
WGS         JZHI01000001-JZHI01000026
WGS_SCAFLD  NZ_JZHI01000001-NZ_JZHI01000026
//
LOCUS       NZ_JZHU01000000      3278612 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis bv. 3 strain BB18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JZHU00000000
VERSION     NZ_JZHU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03382541
            Assembly: GCF_003994205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis bv. 3
  ORGANISM  Brucella melitensis bv. 3
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3278612)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Brucella melitensis BB18 Genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3278612)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2015) National Institute for Communicable Disease
            Control & Prevention, Chinese Center for Disease Control and
            Prevention, P.O. Box 5, Changping, Beijing, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JZHU00000000.1.
            The Brucella melitensis bv. 3 whole genome shotgun (WGS) project
            has the project accession NZ_JZHU00000000.  This version of the
            project (01) has the accession number NZ_JZHU01000000, and consists
            of sequences JZHU01000001-JZHU01000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 706.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003994205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:34:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,211
            CDSs (total)                      :: 3,158
            Genes (coding)                    :: 2,993
            CDSs (with protein)               :: 2,993
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 106 of 165
            Pseudo Genes (incomplete)         :: 33 of 165
            Pseudo Genes (internal stop)      :: 45 of 165
            Pseudo Genes (multiple problems)  :: 17 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278612
                     /organism="Brucella melitensis bv. 3"
                     /mol_type="genomic DNA"
                     /strain="BB18"
                     /isolation_source="diseased sheep"
                     /host="sheep"
                     /db_xref="taxon:644340"
                     /geo_loc_name="China: JiaoZhou"
                     /collection_date="2013"
                     /biovar="3"
WGS         JZHU01000001-JZHU01000021
WGS_SCAFLD  NZ_JZHU01000001-NZ_JZHU01000021
//
LOCUS       NZ_CAVLGA010000000   4457842 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clostridium butyricum isolate 370, whole genome shotgun sequencing
            project.
ACCESSION   NZ_CAVLGA000000000
VERSION     NZ_CAVLGA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114598065
            Assembly: GCF_963668955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clostridium butyricum
  ORGANISM  Clostridium butyricum
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Clostridiaceae; Clostridium.
REFERENCE   1  (bases 1 to 4457842)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAVLGA000000000.1.
            The Clostridium butyricum whole genome shotgun (WGS) project has
            the project accession NZ_CAVLGA000000000.  This version of the
            project (01) has the accession number NZ_CAVLGA010000000, and
            consists of sequences CAVLGA010000001-CAVLGA010000062.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963668955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:33:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,091
            CDSs (total)                      :: 3,990
            Genes (coding)                    :: 3,949
            CDSs (with protein)               :: 3,949
            Genes (RNA)                       :: 101
            rRNAs                             :: 8, 5, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 5, 7 (16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 5 of 41
            Pseudo Genes (incomplete)         :: 30 of 41
            Pseudo Genes (internal stop)      :: 8 of 41
            Pseudo Genes (multiple problems)  :: 2 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4457842
                     /organism="Clostridium butyricum"
                     /mol_type="genomic DNA"
                     /isolate="370"
                     /db_xref="taxon:1492"
WGS         CAVLGA010000001-CAVLGA010000062
WGS_SCAFLD  NZ_CAVLGA010000001-NZ_CAVLGA010000062
//
LOCUS       NZ_JZHD01000000      3279748 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis bv. 1 strain BB10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JZHD00000000
VERSION     NZ_JZHD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03381106
            Assembly: GCF_003993895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis bv. 1
  ORGANISM  Brucella melitensis bv. 1
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3279748)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Brucella melitensis BB10 genome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3279748)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2015) National Institute for Communicable Disease
            Control & Prevention, Chinese Center for Disease Control and
            Prevention, P.O. Box 5, Changping, Beijing, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JZHD00000000.1.
            The Brucella melitensis bv. 1 whole genome shotgun (WGS) project
            has the project accession NZ_JZHD00000000.  This version of the
            project (01) has the accession number NZ_JZHD01000000, and consists
            of sequences JZHD01000001-JZHD01000024.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 896.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003993895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:32:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,217
            CDSs (total)                      :: 3,161
            Genes (coding)                    :: 2,999
            CDSs (with protein)               :: 2,999
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 107 of 162
            Pseudo Genes (incomplete)         :: 31 of 162
            Pseudo Genes (internal stop)      :: 43 of 162
            Pseudo Genes (multiple problems)  :: 17 of 162
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3279748
                     /organism="Brucella melitensis bv. 1"
                     /mol_type="genomic DNA"
                     /strain="BB10"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:644337"
                     /geo_loc_name="China: LiaoNing"
                     /collection_date="2012"
                     /biovar="1"
WGS         JZHD01000001-JZHD01000024
WGS_SCAFLD  NZ_JZHD01000001-NZ_JZHD01000024
//
LOCUS       NZ_JZHW01000000      3278052 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella melitensis bv. 3 strain BB20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JZHW00000000
VERSION     NZ_JZHW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03382543
            Assembly: GCF_003994115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella melitensis bv. 3
  ORGANISM  Brucella melitensis bv. 3
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 3278052)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Brucella melitensis BB20 Genome sequencing
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3278052)
  AUTHORS   Cui,B., Jiang,H., Zhao,N., Fan,W., Di,D., Chen,C. and Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2015) National Institute for Communicable Disease
            Control & Prevention, Chinese Center for Disease Control and
            Prevention, P.O. Box 5, Changping, Beijing, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JZHW00000000.1.
            The Brucella melitensis bv. 3 whole genome shotgun (WGS) project
            has the project accession NZ_JZHW00000000.  This version of the
            project (01) has the accession number NZ_JZHW01000000, and consists
            of sequences JZHW01000001-JZHW01000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 478.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003994115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:35:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,212
            CDSs (total)                      :: 3,159
            Genes (coding)                    :: 2,996
            CDSs (with protein)               :: 2,996
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 107 of 163
            Pseudo Genes (incomplete)         :: 31 of 163
            Pseudo Genes (internal stop)      :: 46 of 163
            Pseudo Genes (multiple problems)  :: 18 of 163
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278052
                     /organism="Brucella melitensis bv. 3"
                     /mol_type="genomic DNA"
                     /strain="BB20"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:644340"
                     /geo_loc_name="China: HaiNan"
                     /collection_date="2011"
                     /biovar="3"
WGS         JZHW01000001-JZHW01000025
WGS_SCAFLD  NZ_JZHW01000001-NZ_JZHW01000025
//
LOCUS       NZ_MTJW01000000      5071993 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain CA-26, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MTJW00000000
VERSION     NZ_MTJW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06234158
            Assembly: GCF_002939255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5071993)
  AUTHORS   Rossolini,G.M.
  TITLE     Citrobacter braakii carrying mcr-1 from food in Bolivia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5071993)
  AUTHORS   Di Pilato,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2017) Department of Surgery and Transnational
            Medicine, University of Florence, Largo Brambilla 3, Florence, FI
            50134, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MTJW00000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_MTJW00000000.  This version of the project
            (01) has the accession number NZ_MTJW01000000, and consists of
            sequences MTJW01000001-MTJW01000094.
            Bacteria and source DNA available from Gian Maria Rossolini.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002939255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:37:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,077
            CDSs (total)                      :: 4,977
            Genes (coding)                    :: 4,842
            CDSs (with protein)               :: 4,842
            Genes (RNA)                       :: 100
            rRNAs                             :: 9, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 76
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 30 of 135
            Pseudo Genes (incomplete)         :: 103 of 135
            Pseudo Genes (internal stop)      :: 22 of 135
            Pseudo Genes (multiple problems)  :: 16 of 135
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5071993
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="CA-26"
                     /isolation_source="boiled potato"
                     /db_xref="taxon:57706"
                     /geo_loc_name="Bolivia: Camiri"
                     /collection_date="2013"
WGS         MTJW01000001-MTJW01000094
WGS_SCAFLD  NZ_MTJW01000001-NZ_MTJW01000094
//
LOCUS       NZ_PVHB01000000      6516873 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain AU28069, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVHB00000000
VERSION     NZ_PVHB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08627967
            Assembly: GCF_002981845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6516873)
  AUTHORS   Nguyen,K., Fouts,D. and Sutton,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVHB00000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_PVHB00000000.  This version of the project
            (01) has the accession number NZ_PVHB01000000, and consists of
            sequences PVHB01000001-PVHB01000097.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 136.67x
            Sequencing Technology  :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002981845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:39:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,973
            CDSs (total)                      :: 5,913
            Genes (coding)                    :: 5,796
            CDSs (with protein)               :: 5,796
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 34 of 117
            Pseudo Genes (incomplete)         :: 89 of 117
            Pseudo Genes (internal stop)      :: 13 of 117
            Pseudo Genes (multiple problems)  :: 19 of 117
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6516873
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="AU28069"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
WGS         PVHB01000001-PVHB01000097
WGS_SCAFLD  NZ_PVHB01000001-NZ_PVHB01000097
//
LOCUS       NZ_QLBF01000000      6441513 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain Bmul_CF170.9g, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QLBF00000000
VERSION     NZ_QLBF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09395555
            Assembly: GCF_003256615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6441513)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     A Genome-Wide Association Analysis Reveals a Role for Recombination
            in the Evolution of Antimicrobial Resistance in Burkholderia
            multivorans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6441513)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2018) Cell and Systems Biology, University of
            Toronto, 25 Harbord Street, Toronto, Ontario M5S 3G5, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QLBF00000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_QLBF00000000.  This version of the project
            (01) has the accession number NZ_QLBF01000000, and consists of
            sequences QLBF01000001-QLBF01000094.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC v. 8.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 128.339x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003256615.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:42:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,979
            CDSs (total)                      :: 5,921
            Genes (coding)                    :: 5,807
            CDSs (with protein)               :: 5,807
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 60 of 114
            Pseudo Genes (incomplete)         :: 65 of 114
            Pseudo Genes (internal stop)      :: 11 of 114
            Pseudo Genes (multiple problems)  :: 20 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6441513
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="Bmul_CF170.9g"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="Canada: Toronto"
                     /lat_lon="43.653650 N 79.377806 W"
                     /collection_date="2012-07-08"
                     /collected_by="Shawn Clark"
WGS         QLBF01000001-QLBF01000094
WGS_SCAFLD  NZ_QLBF01000001-NZ_QLBF01000094
//
LOCUS       NZ_QLDR01000000      6417871 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain Bmul_CF170.3c, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QLDR00000000
VERSION     NZ_QLDR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09394401
            Assembly: GCF_003257625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6417871)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     A Genome-Wide Association Analysis Reveals a Role for Recombination
            in the Evolution of Antimicrobial Resistance in Burkholderia
            multivorans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6417871)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2018) Cell and Systems Biology, University of
            Toronto, 25 Harbord Street, Toronto, Ontario M5S 3G5, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QLDR00000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_QLDR00000000.  This version of the project
            (01) has the accession number NZ_QLDR01000000, and consists of
            sequences QLDR01000001-QLDR01000073.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC v. 8.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 144.331x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003257625.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:45:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,959
            CDSs (total)                      :: 5,901
            Genes (coding)                    :: 5,789
            CDSs (with protein)               :: 5,789
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 54 of 112
            Pseudo Genes (incomplete)         :: 68 of 112
            Pseudo Genes (internal stop)      :: 12 of 112
            Pseudo Genes (multiple problems)  :: 20 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6417871
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="Bmul_CF170.3c"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="Canada: Toronto"
                     /lat_lon="43.653650 N 79.377806 W"
                     /collection_date="2012-01-25"
                     /collected_by="Shawn Clark"
WGS         QLDR01000001-QLDR01000073
WGS_SCAFLD  NZ_QLDR01000001-NZ_QLDR01000073
//
LOCUS       NZ_LDWF01000000      8672695 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia cepacia strain LK13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LDWF00000000
VERSION     NZ_LDWF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03744440
            Assembly: GCF_001038835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia cepacia
  ORGANISM  Burkholderia cepacia
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 8672695)
  AUTHORS   Chan,X.Y.
  TITLE     Draft genome of Burkholderia lata LK13
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8672695)
  AUTHORS   Chan,X.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2015) Genetics, University of Malaya, Microbiome
            1, 2 and 3, Level 1, High Impact Research Building, Kuala Lumpur
            50603, Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LDWF00000000.1.
            The Burkholderia cepacia whole genome shotgun (WGS) project has the
            project accession NZ_LDWF00000000.  This version of the project
            (01) has the accession number NZ_LDWF01000000, and consists of
            sequences LDWF01000001-LDWF01000185.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            The organism was changed from 'Burkholderia lata' to 'Burkholderia
            cepacia' in October 2018.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_001038835.1
            Current Name        :: Burkholderia cepacia
            Previous Name       :: Burkholderia lata
            Date Updated        :: 2018-10-26
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_001528845.1
            A1 Name             :: Burkholderia cepacia
            A1 ANI              :: 97.53692%
            A1 Query Coverage   :: 83.72%
            A1 Subject Coverage :: 85.57%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000012945.1
            A2 Name             :: Burkholderia lata
            A2 ANI              :: 93.38095%
            A2 Query Coverage   :: 75.44%
            A2 Subject Coverage :: 75.41%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomic Workbench v. 7
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 49.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001038835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:46:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8,001
            CDSs (total)                      :: 7,925
            Genes (coding)                    :: 7,777
            CDSs (with protein)               :: 7,777
            Genes (RNA)                       :: 76
            rRNAs                             :: 5, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 41 of 148
            Pseudo Genes (incomplete)         :: 127 of 148
            Pseudo Genes (internal stop)      :: 15 of 148
            Pseudo Genes (multiple problems)  :: 34 of 148
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8672695
                     /organism="Burkholderia cepacia"
                     /mol_type="genomic DNA"
                     /strain="LK13"
                     /isolation_source="Plant"
                     /db_xref="taxon:292"
                     /geo_loc_name="Malaysia: Malacca"
                     /collection_date="2010-07-06"
WGS         LDWF01000001-LDWF01000185
WGS_SCAFLD  NZ_LDWF01000001-NZ_LDWF01000185
//
LOCUS       NZ_QLCW01000000      6433845 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain Bmul_CF170.5d, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QLCW00000000
VERSION     NZ_QLCW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09394870
            Assembly: GCF_003257075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6433845)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     A Genome-Wide Association Analysis Reveals a Role for Recombination
            in the Evolution of Antimicrobial Resistance in Burkholderia
            multivorans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6433845)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUN-2018) Cell and Systems Biology, University of
            Toronto, 25 Harbord Street, Toronto, Ontario M5S 3G5, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QLCW00000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_QLCW00000000.  This version of the project
            (01) has the accession number NZ_QLCW01000000, and consists of
            sequences QLCW01000001-QLCW01000075.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC v. 8.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 118.763x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003257075.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:48:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,957
            CDSs (total)                      :: 5,900
            Genes (coding)                    :: 5,790
            CDSs (with protein)               :: 5,790
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 57 of 110
            Pseudo Genes (incomplete)         :: 63 of 110
            Pseudo Genes (internal stop)      :: 12 of 110
            Pseudo Genes (multiple problems)  :: 20 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6433845
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="Bmul_CF170.5d"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="Canada: Toronto"
                     /lat_lon="43.653650 N 79.377806 W"
                     /collection_date="2012-04-11"
                     /collected_by="Shawn Clark"
WGS         QLCW01000001-QLCW01000075
WGS_SCAFLD  NZ_QLCW01000001-NZ_QLCW01000075
//
LOCUS       NZ_QLBX01000000      6440717 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain Bmul_CF170.7i, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QLBX00000000
VERSION     NZ_QLBX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09395436
            Assembly: GCF_003257175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6440717)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     A Genome-Wide Association Analysis Reveals a Role for Recombination
            in the Evolution of Antimicrobial Resistance in Burkholderia
            multivorans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6440717)
  AUTHORS   Diaz Caballero,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2018) Cell and Systems Biology, University of
            Toronto, 25 Harbord Street, Toronto, Ontario M5S 3G5, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QLBX00000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_QLBX00000000.  This version of the project
            (01) has the accession number NZ_QLBX01000000, and consists of
            sequences QLBX01000001-QLBX01000091.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC v. 8.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 139.628x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003257175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:51:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,981
            CDSs (total)                      :: 5,924
            Genes (coding)                    :: 5,808
            CDSs (with protein)               :: 5,808
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 58 of 116
            Pseudo Genes (incomplete)         :: 69 of 116
            Pseudo Genes (internal stop)      :: 12 of 116
            Pseudo Genes (multiple problems)  :: 21 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6440717
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="Bmul_CF170.7i"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="Canada: Toronto"
                     /lat_lon="43.653650 N 79.377806 W"
                     /collection_date="2012-06-13"
                     /collected_by="Shawn Clark"
WGS         QLBX01000001-QLBX01000091
WGS_SCAFLD  NZ_QLBX01000001-NZ_QLBX01000091
//
LOCUS       NZ_PVGD01000000      6695934 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain AU19518, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVGD00000000
VERSION     NZ_PVGD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08627992
            Assembly: GCF_002981195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6695934)
  AUTHORS   Nguyen,K., Fouts,D. and Sutton,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVGD00000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_PVGD00000000.  This version of the project
            (01) has the accession number NZ_PVGD01000000, and consists of
            sequences PVGD01000001-PVGD01000117.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 130.15x
            Sequencing Technology  :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002981195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:01:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,199
            CDSs (total)                      :: 6,134
            Genes (coding)                    :: 6,025
            CDSs (with protein)               :: 6,025
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 42 of 109
            Pseudo Genes (incomplete)         :: 78 of 109
            Pseudo Genes (internal stop)      :: 11 of 109
            Pseudo Genes (multiple problems)  :: 21 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6695934
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="AU19518"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
WGS         PVGD01000001-PVGD01000117
WGS_SCAFLD  NZ_PVGD01000001-NZ_PVGD01000117
//
LOCUS       NZ_PVHL01000000      6576504 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain AU4507, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVHL00000000
VERSION     NZ_PVHL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08627956
            Assembly: GCF_002981595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6576504)
  AUTHORS   Nguyen,K., Fouts,D. and Sutton,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVHL00000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_PVHL00000000.  This version of the project
            (01) has the accession number NZ_PVHL01000000, and consists of
            sequences PVHL01000001-PVHL01000075.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 148.11x
            Sequencing Technology  :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002981595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:57:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,102
            CDSs (total)                      :: 6,038
            Genes (coding)                    :: 5,937
            CDSs (with protein)               :: 5,937
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 39 of 101
            Pseudo Genes (incomplete)         :: 64 of 101
            Pseudo Genes (internal stop)      :: 20 of 101
            Pseudo Genes (multiple problems)  :: 18 of 101
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6576504
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="AU4507"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
WGS         PVHL01000001-PVHL01000075
WGS_SCAFLD  NZ_PVHL01000001-NZ_PVHL01000075
//
LOCUS       NZ_JAATPM010000000   3305305 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Clavibacter michiganensis subsp. michiganensis strain 1217, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAATPM000000000
VERSION     NZ_JAATPM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14380869
            Assembly: GCF_014893555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Clavibacter michiganensis subsp. michiganensis
  ORGANISM  Clavibacter michiganensis subsp. michiganensis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Microbacteriaceae; Clavibacter.
REFERENCE   1  (bases 1 to 3305305)
  AUTHORS   Kyrova,E. and Ignatov,A.
  TITLE     Draft genome sequence of Clavibacter michiganensis subsp.
            michiganensis 1217 infecting potato plants in Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3305305)
  AUTHORS   Kyrova,E. and Ignatov,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2020) Agrarian and Technological Institute,
            Peoples Friendship University of Russia, Miklukho-Maklaya, Moscow
            117198, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAATPM000000000.1.
            The Clavibacter michiganensis subsp. michiganensis whole genome
            shotgun (WGS) project has the project accession NZ_JAATPM000000000.
            This version of the project (01) has the accession number
            NZ_JAATPM010000000, and consists of sequences
            JAATPM010000001-JAATPM010000227.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from All Russian Research
            Institute of Phytopathology, Russian Agricultural Academy, Bolshie
            Vyazemy, Odintsovo distr., Moscow, 143050 Russia.
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: GS De Novo Assembler v. 1.1
            Genome Representation     :: Full
            Expected Final Version    :: No
            Reference-guided Assembly :: GCA_000063485.1
            Genome Coverage           :: 526x
            Sequencing Technology     :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014893555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,291
            CDSs (total)                      :: 3,239
            Genes (coding)                    :: 3,150
            CDSs (with protein)               :: 3,150
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 15 of 89
            Pseudo Genes (incomplete)         :: 73 of 89
            Pseudo Genes (internal stop)      :: 3 of 89
            Pseudo Genes (multiple problems)  :: 2 of 89
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3305305
                     /organism="Clavibacter michiganensis subsp. michiganensis"
                     /mol_type="genomic DNA"
                     /strain="1217"
                     /host="Solanum tuberosum"
                     /sub_species="michiganensis"
                     /db_xref="taxon:33013"
                     /geo_loc_name="Russia: Kaliningrad region"
                     /collection_date="2006"
WGS         JAATPM010000001-JAATPM010000227
WGS_SCAFLD  NZ_JAATPM010000001-NZ_JAATPM010000227
//
LOCUS       NZ_JACGGJ010000000   5311303 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain W1R, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACGGJ000000000
VERSION     NZ_JACGGJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15659131
            Assembly: GCF_017151575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5311303)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Citrobacter freundii W1R, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5311303)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Tianhe District, Guangzhou,
            Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGGJ000000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_JACGGJ000000000.  This version of the project
            (01) has the accession number NZ_JACGGJ010000000, and consists of
            sequences JACGGJ010000001-JACGGJ010000145.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from South China Agricultural
            University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017151575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:45:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,313
            CDSs (total)                      :: 5,196
            Genes (coding)                    :: 5,044
            CDSs (with protein)               :: 5,044
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 10, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2, 10, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 29 of 152
            Pseudo Genes (incomplete)         :: 129 of 152
            Pseudo Genes (internal stop)      :: 16 of 152
            Pseudo Genes (multiple problems)  :: 19 of 152
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5311303
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="W1R"
                     /isolation_source="Sewage"
                     /db_xref="taxon:57706"
                     /geo_loc_name="China: Yangjiang"
                     /collection_date="2019-02-15T15:26:25Z"
WGS         JACGGJ010000001-JACGGJ010000145
WGS_SCAFLD  NZ_JACGGJ010000001-NZ_JACGGJ010000145
//
LOCUS       NZ_JACGGH010000000   5294679 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain F4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACGGH000000000
VERSION     NZ_JACGGH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15659129
            Assembly: GCF_017151535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5294679)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Citrobacter freundii F4, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5294679)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Tianhe District, Guangzhou,
            Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGGH000000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_JACGGH000000000.  This version of the project
            (01) has the accession number NZ_JACGGH010000000, and consists of
            sequences JACGGH010000001-JACGGH010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from South China Agricultural
            University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017151535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:04:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,261
            CDSs (total)                      :: 5,146
            Genes (coding)                    :: 5,012
            CDSs (with protein)               :: 5,012
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2, 8, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 28 of 134
            Pseudo Genes (incomplete)         :: 112 of 134
            Pseudo Genes (internal stop)      :: 16 of 134
            Pseudo Genes (multiple problems)  :: 19 of 134
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5294679
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="F4"
                     /host="goose"
                     /db_xref="taxon:57706"
                     /geo_loc_name="China: Yangjiang"
                     /collection_date="2019-02-15T15:31:23Z"
WGS         JACGGH010000001-JACGGH010000088
WGS_SCAFLD  NZ_JACGGH010000001-NZ_JACGGH010000088
//
LOCUS       NZ_VKMU01000000      5355337 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter portucalensis strain CF14655, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VKMU00000000
VERSION     NZ_VKMU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12220001
            Assembly: GCF_014855945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter portucalensis
  ORGANISM  Citrobacter portucalensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5355337)
  AUTHORS   Yao,Y., Falgenhauer,L., Imirzalioglu,C. and Chakraborty,T.
  TITLE     KPC-2 carbapenem resistent Enterobacterales isolates from Germany
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5355337)
  AUTHORS   Yao,Y., Falgenhauer,L., Imirzalioglu,C. and Chakraborty,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2019) Institute of Medical Microbiology,
            Justus-Liebig-University Giessen, Schubertstrasse 81, Giessen
            35392, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VKMU00000000.1.
            The Citrobacter portucalensis whole genome shotgun (WGS) project
            has the project accession NZ_VKMU00000000.  This version of the
            project (01) has the accession number NZ_VKMU01000000, and consists
            of sequences VKMU01000001-VKMU01000116.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2014
            Assembly Method        :: CLC NGS Cell v. 2014-08
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 177x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014855945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:07:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,387
            CDSs (total)                      :: 5,299
            Genes (coding)                    :: 5,154
            CDSs (with protein)               :: 5,154
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 145
            CDSs (without protein)            :: 145
            Pseudo Genes (ambiguous residues) :: 0 of 145
            Pseudo Genes (frameshifted)       :: 35 of 145
            Pseudo Genes (incomplete)         :: 115 of 145
            Pseudo Genes (internal stop)      :: 13 of 145
            Pseudo Genes (multiple problems)  :: 16 of 145
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5355337
                     /organism="Citrobacter portucalensis"
                     /mol_type="genomic DNA"
                     /strain="CF14655"
                     /isolation_source="salad kitchen drain"
                     /db_xref="taxon:1639133"
                     /geo_loc_name="Germany: Hesse, Gross-Gerau"
                     /lat_lon="49.91 N 8.47 E"
                     /collection_date="2014-07-29"
                     /collected_by="NRZ"
WGS         VKMU01000001-VKMU01000116
WGS_SCAFLD  NZ_VKMU01000001-NZ_VKMU01000116
//
LOCUS       NZ_JACGGI010000000   5295320 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain F6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACGGI000000000
VERSION     NZ_JACGGI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15659130
            Assembly: GCF_017151545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5295320)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Citrobacter freundii F6, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5295320)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Tianhe District, Guangzhou,
            Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGGI000000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_JACGGI000000000.  This version of the project
            (01) has the accession number NZ_JACGGI010000000, and consists of
            sequences JACGGI010000001-JACGGI010000095.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from South China Agricultural
            University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017151545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:11:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,263
            CDSs (total)                      :: 5,146
            Genes (coding)                    :: 5,011
            CDSs (with protein)               :: 5,011
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 10, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2, 10, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 29 of 135
            Pseudo Genes (incomplete)         :: 113 of 135
            Pseudo Genes (internal stop)      :: 15 of 135
            Pseudo Genes (multiple problems)  :: 19 of 135
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5295320
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="F6"
                     /host="goose"
                     /db_xref="taxon:57706"
                     /geo_loc_name="China: Yangjiang"
                     /collection_date="2019-02-15T15:29:24Z"
WGS         JACGGI010000001-JACGGI010000095
WGS_SCAFLD  NZ_JACGGI010000001-NZ_JACGGI010000095
//
LOCUS       NZ_JACGGG010000000   5293497 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain F5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACGGG000000000
VERSION     NZ_JACGGG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15659128
            Assembly: GCF_017151515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5293497)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Citrobacter freundii F5, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5293497)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Tianhe District, Guangzhou,
            Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGGG000000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_JACGGG000000000.  This version of the project
            (01) has the accession number NZ_JACGGG010000000, and consists of
            sequences JACGGG010000001-JACGGG010000092.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from South China Agricultural
            University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017151515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:19:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,258
            CDSs (total)                      :: 5,141
            Genes (coding)                    :: 5,010
            CDSs (with protein)               :: 5,010
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 10, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2, 10, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 29 of 131
            Pseudo Genes (incomplete)         :: 109 of 131
            Pseudo Genes (internal stop)      :: 15 of 131
            Pseudo Genes (multiple problems)  :: 19 of 131
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5293497
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="F5"
                     /host="goose"
                     /db_xref="taxon:57706"
                     /geo_loc_name="China: Yangjiang"
                     /collection_date="2019-02-15T15:35:22Z"
WGS         JACGGG010000001-JACGGG010000092
WGS_SCAFLD  NZ_JACGGG010000001-NZ_JACGGG010000092
//
LOCUS       NZ_JACGGF010000000   5251793 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter braakii strain F2R, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACGGF000000000
VERSION     NZ_JACGGF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15659127
            Assembly: GCF_017151495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter braakii
  ORGANISM  Citrobacter braakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5251793)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Citrobacter freundii F2R, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5251793)
  AUTHORS   Cen,D., Fang,L. and Sun,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Tianhe District, Guangzhou,
            Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGGF000000000.1.
            The Citrobacter braakii whole genome shotgun (WGS) project has the
            project accession NZ_JACGGF000000000.  This version of the project
            (01) has the accession number NZ_JACGGF010000000, and consists of
            sequences JACGGF010000001-JACGGF010000091.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from South China Agricultural
            University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017151495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:15:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,194
            CDSs (total)                      :: 5,077
            Genes (coding)                    :: 4,945
            CDSs (with protein)               :: 4,945
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 10, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2, 10, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 29 of 132
            Pseudo Genes (incomplete)         :: 110 of 132
            Pseudo Genes (internal stop)      :: 15 of 132
            Pseudo Genes (multiple problems)  :: 19 of 132
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5251793
                     /organism="Citrobacter braakii"
                     /mol_type="genomic DNA"
                     /strain="F2R"
                     /host="goose"
                     /db_xref="taxon:57706"
                     /geo_loc_name="China: Yangjiang"
                     /collection_date="2019-02-15T15:39:21Z"
WGS         JACGGF010000001-JACGGF010000091
WGS_SCAFLD  NZ_JACGGF010000001-NZ_JACGGF010000091
//
LOCUS       NZ_JAMJIR010000000   5518254 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter freundii strain 146, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAMJIR000000000
VERSION     NZ_JAMJIR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27597605
            Assembly: GCF_024643225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter freundii
  ORGANISM  Citrobacter freundii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5518254)
  AUTHORS   Ju,X.
  TITLE     Epidemiology and molecular characteristics of mcr-9 in Citrobacter
            freundii from healthy individuals and patients in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5518254)
  AUTHORS   Ju,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2022) Clinical Microbiology Laboratory, The
            Second Affiliated Hospital of Zhejiang University School of
            Medicine, Zhejiang University, 88 Jiefang Rd, Hangzhou, Zhejiang
            310009, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMJIR000000000.1.
            The Citrobacter freundii whole genome shotgun (WGS) project has the
            project accession NZ_JAMJIR000000000.  This version of the project
            (01) has the accession number NZ_JAMJIR010000000, and consists of
            sequences JAMJIR010000001-JAMJIR010000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 324x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024643225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:38:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,506
            CDSs (total)                      :: 5,408
            Genes (coding)                    :: 5,301
            CDSs (with protein)               :: 5,301
            Genes (RNA)                       :: 98
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 33 of 107
            Pseudo Genes (incomplete)         :: 77 of 107
            Pseudo Genes (internal stop)      :: 23 of 107
            Pseudo Genes (multiple problems)  :: 24 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5518254
                     /organism="Citrobacter freundii"
                     /mol_type="genomic DNA"
                     /strain="146"
                     /host="Homo sapiens"
                     /db_xref="taxon:546"
                     /geo_loc_name="China"
                     /collection_date="2021-10"
WGS         JAMJIR010000001-JAMJIR010000082
WGS_SCAFLD  NZ_JAMJIR010000001-NZ_JAMJIR010000082
//
LOCUS       NZ_JAGXDS010000000   6670379 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain 16375, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGXDS000000000
VERSION     NZ_JAGXDS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19006163
            Assembly: GCF_024146275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6670379)
  AUTHORS   Chi,X.
  TITLE     Analysis of the genomic characteristics of Burkholder related to
            respiratory diseases
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6670379)
  AUTHORS   Chi,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2021) Internal Medicine, Zhejiang University,
            Qingchun Road 79, Hangzhou 310002, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGXDS000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_JAGXDS000000000.  This version of the
            project (01) has the accession number NZ_JAGXDS010000000, and
            consists of sequences JAGXDS010000001-JAGXDS010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.10.30
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024146275.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:48:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,132
            CDSs (total)                      :: 6,063
            Genes (coding)                    :: 5,952
            CDSs (with protein)               :: 5,952
            Genes (RNA)                       :: 69
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 37 of 111
            Pseudo Genes (incomplete)         :: 82 of 111
            Pseudo Genes (internal stop)      :: 10 of 111
            Pseudo Genes (multiple problems)  :: 18 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6670379
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="16375"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="China: Zhejiang, Hangzhou"
                     /lat_lon="30 N 120 E"
                     /collection_date="2014-01-26"
                     /collected_by="Hao Xu"
WGS         JAGXDS010000001-JAGXDS010000080
WGS_SCAFLD  NZ_JAGXDS010000001-NZ_JAGXDS010000080
//
LOCUS       NZ_JAPJVE010000000   5248168 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter freundii strain 67526, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAPJVE000000000
VERSION     NZ_JAPJVE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31680615
            Assembly: GCF_026274765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter freundii
  ORGANISM  Citrobacter freundii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5248168)
  AUTHORS   Mattioni Marchetti,V., Bitar,I. and Hrabak,J.
  TITLE     Polyclonal spread of Fosfomycin resistance among
            Carbapenemase-producing Enterobacterales in the Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5248168)
  AUTHORS   Mattioni Marchetti,V., Bitar,I. and Hrabak,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-NOV-2022) Department of Microbiology, Charles
            University in Pilsen, Alej Svobody 1655/76, Plzen, Plzen 32300,
            Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAPJVE000000000.1.
            The Citrobacter freundii whole genome shotgun (WGS) project has the
            project accession NZ_JAPJVE000000000.  This version of the project
            (01) has the accession number NZ_JAPJVE010000000, and consists of
            sequences JAPJVE010000001-JAPJVE010000131.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.4.
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026274765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:46:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,129
            CDSs (total)                      :: 5,065
            Genes (coding)                    :: 4,952
            CDSs (with protein)               :: 4,952
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 32 of 113
            Pseudo Genes (incomplete)         :: 84 of 113
            Pseudo Genes (internal stop)      :: 20 of 113
            Pseudo Genes (multiple problems)  :: 21 of 113
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5248168
                     /organism="Citrobacter freundii"
                     /mol_type="genomic DNA"
                     /strain="67526"
                     /isolation_source="swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:546"
                     /geo_loc_name="Czech Republic: Plzen"
                     /lat_lon="49.7384 N 13.3736 E"
                     /collection_date="2021-10"
                     /collected_by="Nemocnice Plzen"
                     /genotype="ST19"
WGS         JAPJVE010000001-JAPJVE010000131
WGS_SCAFLD  NZ_JAPJVE010000001-NZ_JAPJVE010000131
//
LOCUS       NZ_CAJHDX010000000   6384309 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans isolate BCC0101, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJHDX000000000
VERSION     NZ_CAJHDX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7049007
            Assembly: GCF_904851365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6384309)
  AUTHORS   Parfitt M,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2020) CARDIFF UNIVERSITY, Microbiomes, Microbes
            and Informatics, School of Biosciences, Sir Martin Evans Building,
            The, Museum Ave, Cardiff CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJHDX000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_CAJHDX000000000.  This version of the
            project (01) has the accession number NZ_CAJHDX010000000, and
            consists of sequences CAJHDX010000001-CAJHDX010000113.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_904851365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,856
            CDSs (total)                      :: 5,795
            Genes (coding)                    :: 5,691
            CDSs (with protein)               :: 5,691
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 29 of 104
            Pseudo Genes (incomplete)         :: 90 of 104
            Pseudo Genes (internal stop)      :: 3 of 104
            Pseudo Genes (multiple problems)  :: 18 of 104
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6384309
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /isolate="BCC0101"
                     /db_xref="taxon:87883"
WGS         CAJHDX010000001-CAJHDX010000113
WGS_SCAFLD  NZ_CAJHDX010000001-NZ_CAJHDX010000113
//
LOCUS       NZ_CAJHDG010000000   6455034 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans isolate BCC0702, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJHDG000000000
VERSION     NZ_CAJHDG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7049022
            Assembly: GCF_904850235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6455034)
  AUTHORS   Parfitt M,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2020) CARDIFF UNIVERSITY, Microbiomes, Microbes
            and Informatics, School of Biosciences, Sir Martin Evans Building,
            The, Museum Ave, Cardiff CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJHDG000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_CAJHDG000000000.  This version of the
            project (01) has the accession number NZ_CAJHDG010000000, and
            consists of sequences CAJHDG010000001-CAJHDG010000110.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_904850235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:52:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,953
            CDSs (total)                      :: 5,887
            Genes (coding)                    :: 5,773
            CDSs (with protein)               :: 5,773
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 37 of 114
            Pseudo Genes (incomplete)         :: 94 of 114
            Pseudo Genes (internal stop)      :: 8 of 114
            Pseudo Genes (multiple problems)  :: 23 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6455034
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /isolate="BCC0702"
                     /db_xref="taxon:87883"
WGS         CAJHDG010000001-CAJHDG010000110
WGS_SCAFLD  NZ_CAJHDG010000001-NZ_CAJHDG010000110
//
LOCUS       NZ_JALNMB010000000   5100049 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter koseri strain CK1008, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALNMB000000000
VERSION     NZ_JALNMB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27378614
            Assembly: GCF_023156325.3
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter koseri
  ORGANISM  Citrobacter koseri
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter.
REFERENCE   1  (bases 1 to 5100049)
  AUTHORS   Wang,L., Shen,W., Zhang,R. and Cai,J.
  TITLE     Identification of a Novel Ceftazidime-Avibactam-Resistant KPC-2
            Variant, KPC-123, in Citrobacter koseri Following
            Ceftazidime-Avibactam Treatment
  JOURNAL   Front Microbiol 13, 930777 (2022)
   PUBMED   35794918
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5100049)
  AUTHORS   Cai,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) Clinical Microbiology Laboratory, The
            Second Affiliated Hospital of Zhejiang University School of
            Medicine, Zhejiang University, 88 Jiefang Road, Hangzhou 310009,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALNMB000000000.1.
            
            On Sep 29, 2022 this sequence version replaced gi:2288147156.
            The Citrobacter koseri whole genome shotgun (WGS) project has the
            project accession NZ_JALNMB000000000.  This version of the project
            (01) has the accession number NZ_JALNMB010000000, and consists of
            sequences JALNMB010000015-JALNMB010000035.
            
            Contig JALNMB010000014 was replaced with ON209376 (AUG-2022).
            
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v.3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023156325.3-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:02:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,915
            CDSs (total)                      :: 4,829
            Genes (coding)                    :: 4,767
            CDSs (with protein)               :: 4,767
            Genes (RNA)                       :: 86
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 25 of 62
            Pseudo Genes (incomplete)         :: 38 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 10 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5100049
                     /organism="Citrobacter koseri"
                     /mol_type="genomic DNA"
                     /strain="CK1008"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:545"
                     /geo_loc_name="China"
                     /collection_date="2021"
WGS         JALNMB010000001-JALNMB010000013
WGS         JALNMB010000015-JALNMB010000035
WGS_SCAFLD  NZ_JALNMB010000001-NZ_JALNMB010000013
WGS_SCAFLD  NZ_JALNMB010000015-NZ_JALNMB010000035
WGS_SCAFLD  NZ_ON209376
WGS_SCAFLD  ON209376
//
LOCUS       NZ_CAJORW010000000   6454508 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans isolate BCC0704, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJORW000000000
VERSION     NZ_CAJORW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7777234
            Assembly: GCF_905332685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6454508)
  AUTHORS   Parfitt M,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2021) CARDIFF UNIVERSITY, Microbiomes, Microbes
            and Informatics, School of Biosciences, Sir Martin Evans Building,
            The, Museum Ave, Cardiff CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJORW000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_CAJORW000000000.  This version of the
            project (01) has the accession number NZ_CAJORW010000000, and
            consists of sequences CAJORW010000001-CAJORW010000105.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905332685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:02:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,951
            CDSs (total)                      :: 5,885
            Genes (coding)                    :: 5,773
            CDSs (with protein)               :: 5,773
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 37 of 112
            Pseudo Genes (incomplete)         :: 92 of 112
            Pseudo Genes (internal stop)      :: 8 of 112
            Pseudo Genes (multiple problems)  :: 23 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6454508
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /isolate="BCC0704"
                     /db_xref="taxon:87883"
WGS         CAJORW010000001-CAJORW010000105
WGS_SCAFLD  NZ_CAJORW010000001-NZ_CAJORW010000105
//
LOCUS       NZ_CAJORY010000000   6667645 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans isolate BCC0907, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJORY000000000
VERSION     NZ_CAJORY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7777237
            Assembly: GCF_905332705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6667645)
  AUTHORS   Parfitt M,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2021) CARDIFF UNIVERSITY, Microbiomes, Microbes
            and Informatics, School of Biosciences, Sir Martin Evans Building,
            The, Museum Ave, Cardiff CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJORY000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_CAJORY000000000.  This version of the
            project (01) has the accession number NZ_CAJORY010000000, and
            consists of sequences CAJORY010000001-CAJORY010000099.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_905332705.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:02:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,099
            CDSs (total)                      :: 6,036
            Genes (coding)                    :: 5,929
            CDSs (with protein)               :: 5,929
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 36 of 107
            Pseudo Genes (incomplete)         :: 81 of 107
            Pseudo Genes (internal stop)      :: 14 of 107
            Pseudo Genes (multiple problems)  :: 22 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6667645
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /isolate="BCC0907"
                     /db_xref="taxon:87883"
WGS         CAJORY010000001-CAJORY010000099
WGS_SCAFLD  NZ_CAJORY010000001-NZ_CAJORY010000099
//
LOCUS       NZ_JAGXDR010000000   6671164 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain 16392, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGXDR000000000
VERSION     NZ_JAGXDR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19006164
            Assembly: GCF_024146305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6671164)
  AUTHORS   Chi,X.
  TITLE     Analysis of the genomic characteristics of Burkholder related to
            respiratory diseases
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6671164)
  AUTHORS   Chi,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2021) Internal Medicine, Zhejiang University,
            Qingchun Road 79, Hangzhou 310002, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGXDR000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_JAGXDR000000000.  This version of the
            project (01) has the accession number NZ_JAGXDR010000000, and
            consists of sequences JAGXDR010000001-JAGXDR010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.10.31
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024146305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:03:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,126
            CDSs (total)                      :: 6,058
            Genes (coding)                    :: 5,946
            CDSs (with protein)               :: 5,946
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 36 of 112
            Pseudo Genes (incomplete)         :: 84 of 112
            Pseudo Genes (internal stop)      :: 10 of 112
            Pseudo Genes (multiple problems)  :: 18 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6671164
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="16392"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="China: Zhejiang, Hangzhou"
                     /lat_lon="30 N 120 E"
                     /collection_date="2014-02-03"
                     /collected_by="Hao Xu"
WGS         JAGXDR010000001-JAGXDR010000068
WGS_SCAFLD  NZ_JAGXDR010000001-NZ_JAGXDR010000068
//
LOCUS       NZ_JAGXEI010000000   6670874 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain 15115, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGXEI000000000
VERSION     NZ_JAGXEI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19006147
            Assembly: GCF_024146775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6670874)
  AUTHORS   Chi,X.
  TITLE     Analysis of the genomic characteristics of Burkholder related to
            respiratory diseases
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6670874)
  AUTHORS   Chi,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2021) Internal Medicine, Zhejiang University,
            Qingchun Road 79, Hangzhou 310002, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGXEI000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_JAGXEI000000000.  This version of the
            project (01) has the accession number NZ_JAGXEI010000000, and
            consists of sequences JAGXEI010000001-JAGXEI010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.10.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024146775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:00:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,129
            CDSs (total)                      :: 6,060
            Genes (coding)                    :: 5,950
            CDSs (with protein)               :: 5,950
            Genes (RNA)                       :: 69
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 37 of 110
            Pseudo Genes (incomplete)         :: 81 of 110
            Pseudo Genes (internal stop)      :: 10 of 110
            Pseudo Genes (multiple problems)  :: 18 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6670874
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="15115"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="China: Zhejiang, Hangzhou"
                     /lat_lon="30 N 120 E"
                     /collection_date="2013-06-05"
                     /collected_by="Hao Xu"
WGS         JAGXEI010000001-JAGXEI010000066
WGS_SCAFLD  NZ_JAGXEI010000001-NZ_JAGXEI010000066
//
LOCUS       NZ_JAKCPK010000000   7731599 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia cenocepacia strain 41774/4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKCPK000000000
VERSION     NZ_JAKCPK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24607277
            Assembly: GCF_022556015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia cenocepacia
  ORGANISM  Burkholderia cenocepacia
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 7731599)
  AUTHORS   Bocharova,Y., Savinova,T., Chaplin,A., Korostin,D. and Chebotar,I.
  TITLE     Cystic fibrosis Burkholderia cepacia complex
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7731599)
  AUTHORS   Bocharova,Y., Savinova,T., Chaplin,A., Korostin,D. and Chebotar,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2022) Laboratory of Molecular Microbiology,
            Pirogov Russian National Research Medical University, Ostrovitianov
            Str., Moscow 117997, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKCPK000000000.1.
            The Burkholderia cenocepacia whole genome shotgun (WGS) project has
            the project accession NZ_JAKCPK000000000.  This version of the
            project (01) has the accession number NZ_JAKCPK010000000, and
            consists of sequences JAKCPK010000001-JAKCPK010000125.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: MGI
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022556015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:56:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,121
            CDSs (total)                      :: 7,059
            Genes (coding)                    :: 6,925
            CDSs (with protein)               :: 6,925
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 55 of 134
            Pseudo Genes (incomplete)         :: 94 of 134
            Pseudo Genes (internal stop)      :: 10 of 134
            Pseudo Genes (multiple problems)  :: 21 of 134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7731599
                     /organism="Burkholderia cenocepacia"
                     /mol_type="genomic DNA"
                     /strain="41774/4"
                     /host="Homo sapiens"
                     /db_xref="taxon:95486"
                     /geo_loc_name="Russia: Moscow"
                     /collection_date="2020-01"
WGS         JAKCPK010000001-JAKCPK010000125
WGS_SCAFLD  NZ_JAKCPK010000001-NZ_JAKCPK010000125
//
LOCUS       NZ_JAQPEA010000000   5481504 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Citrobacter freundii strain INF_2281, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAQPEA000000000
VERSION     NZ_JAQPEA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31066020
            Assembly: GCF_029084345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Citrobacter freundii
  ORGANISM  Citrobacter freundii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter
            freundii complex.
REFERENCE   1  (bases 1 to 5481504)
  AUTHORS   Peirano,G.
  TITLE     Carbapenemase-producing Citrobacter spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5481504)
  AUTHORS   Peirano,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2022) Microbiology, University of Calgary, 9,
            3535 Research Road NW, Calgary, Alberta T2L 2K8, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAQPEA000000000.1.
            The Citrobacter freundii whole genome shotgun (WGS) project has the
            project accession NZ_JAQPEA000000000.  This version of the project
            (01) has the accession number NZ_JAQPEA010000000, and consists of
            sequences JAQPEA010000001-JAQPEA010000123.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029084345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:06:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,427
            CDSs (total)                      :: 5,350
            Genes (coding)                    :: 5,235
            CDSs (with protein)               :: 5,235
            Genes (RNA)                       :: 77
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 63
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 32 of 115
            Pseudo Genes (incomplete)         :: 84 of 115
            Pseudo Genes (internal stop)      :: 18 of 115
            Pseudo Genes (multiple problems)  :: 17 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5481504
                     /organism="Citrobacter freundii"
                     /mol_type="genomic DNA"
                     /strain="INF_2281"
                     /isolation_source="bronchoalveolar lavage"
                     /host="Homo sapiens"
                     /db_xref="taxon:546"
                     /geo_loc_name="Taiwan"
                     /collection_date="2017"
                     /collected_by="INFORM"
WGS         JAQPEA010000001-JAQPEA010000123
WGS_SCAFLD  NZ_JAQPEA010000001-NZ_JAQPEA010000123
//
LOCUS       NZ_JAGXEP010000000   6542067 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans strain 10120, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGXEP000000000
VERSION     NZ_JAGXEP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19006140
            Assembly: GCF_024146885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6542067)
  AUTHORS   Chi,X.
  TITLE     Analysis of the genomic characteristics of Burkholder related to
            respiratory diseases
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6542067)
  AUTHORS   Chi,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2021) Internal Medicine, Zhejiang University,
            Qingchun Road 79, Hangzhou 310002, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGXEP000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_JAGXEP000000000.  This version of the
            project (01) has the accession number NZ_JAGXEP010000000, and
            consists of sequences JAGXEP010000001-JAGXEP010000107.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 3.10.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024146885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:03:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,030
            CDSs (total)                      :: 5,957
            Genes (coding)                    :: 5,853
            CDSs (with protein)               :: 5,853
            Genes (RNA)                       :: 73
            rRNAs                             :: 4, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 27 of 104
            Pseudo Genes (incomplete)         :: 83 of 104
            Pseudo Genes (internal stop)      :: 11 of 104
            Pseudo Genes (multiple problems)  :: 16 of 104
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6542067
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /strain="10120"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:87883"
                     /geo_loc_name="China: Zhejiang, Hangzhou"
                     /lat_lon="30 N 120 E"
                     /collection_date="2013-04-28"
                     /collected_by="Hao Xu"
WGS         JAGXEP010000001-JAGXEP010000107
WGS_SCAFLD  NZ_JAGXEP010000001-NZ_JAGXEP010000107
//
LOCUS       NZ_CAJHDH010000000   6530376 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans isolate BCC0493, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJHDH000000000
VERSION     NZ_CAJHDH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7049020
            Assembly: GCF_904850255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6530376)
  AUTHORS   Parfitt M,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2020) CARDIFF UNIVERSITY, Microbiomes, Microbes
            and Informatics, School of Biosciences, Sir Martin Evans Building,
            The, Museum Ave, Cardiff CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJHDH000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_CAJHDH000000000.  This version of the
            project (01) has the accession number NZ_CAJHDH010000000, and
            consists of sequences CAJHDH010000001-CAJHDH010000126.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_904850255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:04:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,974
            CDSs (total)                      :: 5,920
            Genes (coding)                    :: 5,810
            CDSs (with protein)               :: 5,810
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 43 of 110
            Pseudo Genes (incomplete)         :: 79 of 110
            Pseudo Genes (internal stop)      :: 13 of 110
            Pseudo Genes (multiple problems)  :: 22 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6530376
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /isolate="BCC0493"
                     /db_xref="taxon:87883"
WGS         CAJHDH010000001-CAJHDH010000126
WGS_SCAFLD  NZ_CAJHDH010000001-NZ_CAJHDH010000126
//
LOCUS       NZ_CAJHEE010000000   6652537 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia multivorans isolate BCC0188, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJHEE000000000
VERSION     NZ_CAJHEE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7049009
            Assembly: GCF_904852175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia multivorans
  ORGANISM  Burkholderia multivorans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 6652537)
  AUTHORS   Parfitt M,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2020) CARDIFF UNIVERSITY, Microbiomes, Microbes
            and Informatics, School of Biosciences, Sir Martin Evans Building,
            The, Museum Ave, Cardiff CF10 3AX, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJHEE000000000.1.
            The Burkholderia multivorans whole genome shotgun (WGS) project has
            the project accession NZ_CAJHEE000000000.  This version of the
            project (01) has the accession number NZ_CAJHEE010000000, and
            consists of sequences CAJHEE010000001-CAJHEE010000144.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_904852175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:05:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,157
            CDSs (total)                      :: 6,090
            Genes (coding)                    :: 5,972
            CDSs (with protein)               :: 5,972
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 38 of 118
            Pseudo Genes (incomplete)         :: 82 of 118
            Pseudo Genes (internal stop)      :: 15 of 118
            Pseudo Genes (multiple problems)  :: 16 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6652537
                     /organism="Burkholderia multivorans"
                     /mol_type="genomic DNA"
                     /isolate="BCC0188"
                     /db_xref="taxon:87883"
WGS         CAJHEE010000001-CAJHEE010000144
WGS_SCAFLD  NZ_CAJHEE010000001-NZ_CAJHEE010000144
//
LOCUS       NZ_JYMW02000000      7974314 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia cenocepacia strain BC-3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JYMW00000000
VERSION     NZ_JYMW00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03349483
            Assembly: GCF_002071995.2
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia cenocepacia
  ORGANISM  Burkholderia cenocepacia
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 7974314)
  AUTHORS   Patil,P.P., Mali,S., Midha,S., Gautam,V., Dash,L., Kumar,S.,
            Shastri,J., Singhal,L. and Patil,P.B.
  TITLE     Genomics Reveals a Unique Clone of Burkholderia cenocepacia
            Harboring an Actively Excising Novel Genomic Island
  JOURNAL   Front Microbiol 8, 590 (2017)
   PUBMED   28428775
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7974314)
  AUTHORS   Patil,P., Mali,S., Midha,S., Gautam,V., Dash,L., Kumar,S.,
            Shastri,J., Singhal,L. and Patil,P.B.
  TITLE     Genomics reveals a unique clone of Burkholderia cenocepacia
            harbouring an actively excising novel genomic island
  JOURNAL   Front Microbiol 8 (590), 1-11 (2017)
REFERENCE   3  (bases 1 to 7974314)
  AUTHORS   Saroha,T., Patil,P., Gautam,D.V. and Patil,D.P.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2021) Bacterial Genomics and Evolution
            Laboratory, CSIR-Institute of Microbial Technology, Sector 39A,
            Chandigarh, Chandigarh 160036, India
REFERENCE   4  (bases 1 to 7974314)
  AUTHORS   Patil,P.P., Midha,S., Mali,S., Gautam,V., Dash,L., Kumar,S.,
            Shastri,J., Singhal,L. and Patil,P.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2015) Bacterial Genomics and Evolution
            Laboratory, CSIR-Institute of Microbial Technology, Sector 39A,
            Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JYMW00000000.2.
            
            On Nov 8, 2022 this sequence version replaced NZ_JYMW00000000.1.
            The Burkholderia cenocepacia whole genome shotgun (WGS) project has
            the project accession NZ_JYMW00000000.  This version of the project
            (02) has the accession number NZ_JYMW02000000, and consists of
            sequences JYMW02000001-JYMW02000216.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002071995.2-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:12:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,392
            CDSs (total)                      :: 7,312
            Genes (coding)                    :: 7,175
            CDSs (with protein)               :: 7,175
            Genes (RNA)                       :: 80
            rRNAs                             :: 4, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 4, 6 (16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 36 of 137
            Pseudo Genes (incomplete)         :: 115 of 137
            Pseudo Genes (internal stop)      :: 10 of 137
            Pseudo Genes (multiple problems)  :: 23 of 137
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7974314
                     /organism="Burkholderia cenocepacia"
                     /mol_type="genomic DNA"
                     /strain="BC-3"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:95486"
                     /geo_loc_name="India"
                     /collection_date="2012"
WGS         JYMW02000001-JYMW02000216
WGS_SCAFLD  NZ_JYMW02000001-NZ_JYMW02000216
//
LOCUS       NZ_JBLYHD010000000   1695265 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Campylobacter coli strain cjeju23_88, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBLYHD000000000
VERSION     NZ_JBLYHD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45148085
            Assembly: GCF_049064205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1695265)
  AUTHORS   Fernandez Palacios,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2024) Servicio de Microbiologia, Hospital
            Universitario Puerta del Mar, S/ Luis Braille n 17, Barbate, Cadiz
            11160, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBLYHD000000000.1.
            The Campylobacter coli whole genome shotgun (WGS) project has the
            project accession NZ_JBLYHD000000000.  This version of the project
            (01) has the accession number NZ_JBLYHD010000000, and consists of
            sequences JBLYHD010000001-JBLYHD010000021.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. SPAdes version 3.14
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 146x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049064205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:57:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,788
            CDSs (total)                      :: 1,744
            Genes (coding)                    :: 1,696
            CDSs (with protein)               :: 1,696
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 27 of 48
            Pseudo Genes (incomplete)         :: 21 of 48
            Pseudo Genes (internal stop)      :: 6 of 48
            Pseudo Genes (multiple problems)  :: 6 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695265
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /strain="cjeju23_88"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:195"
                     /geo_loc_name="Spain: Cadiz"
                     /collection_date="2023-05-02"
                     /collected_by="Hospital Universitario Puerta del Mar"
WGS         JBLYHD010000001-JBLYHD010000021
WGS_SCAFLD  NZ_JBLYHD010000001-NZ_JBLYHD010000021
//
LOCUS       NZ_JBBULH010000000   8167775 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia contaminans strain ID_256_23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBULH000000000
VERSION     NZ_JBBULH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40603085
            Assembly: GCF_038066895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia contaminans
  ORGANISM  Burkholderia contaminans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 8167775)
  AUTHORS   Camargo,C.H.
  TITLE     A Burkholderia contaminans outbreak in ICU associated with
            contaminated bath solution: control and microbiological findings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8167775)
  AUTHORS   Camargo,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2024) Bacteriology Division, Instituto Adolfo
            Lutz, Avenida Dr Arnaldo 351, 9o andar, Sao Paulo 01246902, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBULH000000000.1.
            The Burkholderia contaminans whole genome shotgun (WGS) project has
            the project accession NZ_JBBULH000000000.  This version of the
            project (01) has the accession number NZ_JBBULH010000000, and
            consists of sequences JBBULH010000001-JBBULH010000185.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: CLC NGS Cell v. DEC-2023
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038066895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:16:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,689
            CDSs (total)                      :: 7,621
            Genes (coding)                    :: 7,394
            CDSs (with protein)               :: 7,394
            Genes (RNA)                       :: 68
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 227
            CDSs (without protein)            :: 227
            Pseudo Genes (ambiguous residues) :: 1 of 227
            Pseudo Genes (frameshifted)       :: 63 of 227
            Pseudo Genes (incomplete)         :: 188 of 227
            Pseudo Genes (internal stop)      :: 14 of 227
            Pseudo Genes (multiple problems)  :: 36 of 227
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8167775
                     /organism="Burkholderia contaminans"
                     /mol_type="genomic DNA"
                     /strain="ID_256_23"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:488447"
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="23.53386338 S 46.64031822 W"
                     /collection_date="2023-02-23"
                     /collected_by="Carlos Camargo"
                     /genotype="ST762"
WGS         JBBULH010000001-JBBULH010000185
WGS_SCAFLD  NZ_JBBULH010000001-NZ_JBBULH010000185
//
LOCUS       NZ_JBBULG010000000   8179274 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Burkholderia contaminans strain ID_254_23, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBULG000000000
VERSION     NZ_JBBULG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40603086
            Assembly: GCF_038066835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Burkholderia contaminans
  ORGANISM  Burkholderia contaminans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia
            cepacia complex.
REFERENCE   1  (bases 1 to 8179274)
  AUTHORS   Camargo,C.H.
  TITLE     A Burkholderia contaminans outbreak in ICU associated with
            contaminated bath solution: control and microbiological findings
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8179274)
  AUTHORS   Camargo,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2024) Bacteriology Division, Instituto Adolfo
            Lutz, Avenida Dr Arnaldo 351, 9o andar, Sao Paulo 01246902, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBULG000000000.1.
            The Burkholderia contaminans whole genome shotgun (WGS) project has
            the project accession NZ_JBBULG000000000.  This version of the
            project (01) has the accession number NZ_JBBULG010000000, and
            consists of sequences JBBULG010000001-JBBULG010000162.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: CLC NGS Cell v. DEC-2023
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038066835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:37:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,679
            CDSs (total)                      :: 7,608
            Genes (coding)                    :: 7,393
            CDSs (with protein)               :: 7,393
            Genes (RNA)                       :: 71
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 215
            CDSs (without protein)            :: 215
            Pseudo Genes (ambiguous residues) :: 1 of 215
            Pseudo Genes (frameshifted)       :: 60 of 215
            Pseudo Genes (incomplete)         :: 176 of 215
            Pseudo Genes (internal stop)      :: 14 of 215
            Pseudo Genes (multiple problems)  :: 33 of 215
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8179274
                     /organism="Burkholderia contaminans"
                     /mol_type="genomic DNA"
                     /strain="ID_254_23"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:488447"
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="23.53386338 S 46.64031822 W"
                     /collection_date="2023-01-20"
                     /collected_by="Carlos Camargo"
                     /genotype="ST762"
WGS         JBBULG010000001-JBBULG010000162
WGS_SCAFLD  NZ_JBBULG010000001-NZ_JBBULG010000162
//
LOCUS       NZ_JBNBBZ010000000   4927693 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Brucella pituitosa strain MM2025_Grp1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNBBZ000000000
VERSION     NZ_JBNBBZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47099757
            Assembly: GCF_049726565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Brucella pituitosa (Ochrobactrum pituitosum)
  ORGANISM  Brucella pituitosa
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Brucellaceae; Brucella/Ochrobactrum group;
            Brucella.
REFERENCE   1  (bases 1 to 4927693)
  AUTHORS   Jakobsen,A.H., Mattesen,E.S., Hansen,J.W., Finster,K. and
            Marshall,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2025) Department of Biology, Aarhus University,
            Ny Munkegade 114-116, Aarhus C 8000, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNBBZ000000000.1.
            The Brucella pituitosa whole genome shotgun (WGS) project has the
            project accession NZ_JBNBBZ000000000.  This version of the project
            (01) has the accession number NZ_JBNBBZ010000000, and consists of
            sequences JBNBBZ010000001-JBNBBZ010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Kai Finster.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-FEB-2025
            Assembly Method        :: Flye v. 2.9.3-b1797
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 217.0x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049726565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:26:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,726
            CDSs (total)                      :: 4,652
            Genes (coding)                    :: 4,552
            CDSs (with protein)               :: 4,552
            Genes (RNA)                       :: 74
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 37 of 100
            Pseudo Genes (incomplete)         :: 77 of 100
            Pseudo Genes (internal stop)      :: 13 of 100
            Pseudo Genes (multiple problems)  :: 23 of 100
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4927693
                     /organism="Brucella pituitosa"
                     /mol_type="genomic DNA"
                     /strain="MM2025_Grp1"
                     /isolation_source="soil"
                     /db_xref="taxon:571256"
                     /geo_loc_name="Denmark: Aarhus"
                     /collection_date="2023-09-06"
WGS         JBNBBZ010000001-JBNBBZ010000005
WGS_SCAFLD  NZ_JBNBBZ010000001-NZ_JBNBBZ010000005
//
LOCUS       NZ_AFHR01000000      4806970 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter hormaechei ATCC 49162, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AFHR00000000
VERSION     NZ_AFHR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00259689
            Assembly: GCF_000213995.1
KEYWORDS    WGS; STANDARD_DRAFT; RefSeq.
SOURCE      Enterobacter hormaechei ATCC 49162
  ORGANISM  Enterobacter hormaechei ATCC 49162
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4806970)
  AUTHORS   Muzny,D., Qin,X., Deng,J., Jiang,H., Liu,Y., Qu,J., Song,X.-Z.,
            Zhang,L., Thornton,R., Coyle,M., Francisco,L., Jackson,L.,
            Javaid,M., Korchina,V., Kovar,C., Mata,R., Mathew,T., Ngo,R.,
            Nguyen,L., Nguyen,N., Okwuonu,G., Ongeri,F., Pham,C., Simmons,D.,
            Wilczek-Boney,K., Hale,W., Jakkamsetti,A., Pham,P., Ruth,R., San
            Lucas,F., Warren,J., Zhang,J., Zhao,Z., Zhou,C., Zhu,D., Lee,S.,
            Bess,C., Blankenburg,K., Forbes,L., Fu,Q., Gubbala,S., Hirani,K.,
            Jayaseelan,J.C., Lara,F., Munidasa,M., Palculict,T., Patil,S.,
            Pu,L.-L., Saada,N., Tang,L., Weissenberger,G., Zhu,Y., Hemphill,L.,
            Shang,Y., Youmans,B., Ayvaz,T., Ross,M., Santibanez,J., Aqrawi,P.,
            Gross,S., Joshi,V., Fowler,G., Nazareth,L., Reid,J., Worley,K.,
            Petrosino,J., Highlander,S. and Gibbs,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2011) Human Genome Sequencing Center, Baylor
            College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AFHR00000000.1.
            The Enterobacter hormaechei ATCC 49162 whole genome shotgun (WGS)
            project has the project accession NZ_AFHR00000000.  This version of
            the project (01) has the accession number NZ_AFHR01000000, and
            consists of sequences AFHR01000001-AFHR01000084.
            Enterobacter hormaechei ssp. steigerwaltii oral taxon 634
            
             Strain source, body site: Oral
            
             Inquiries should be directed to microbe@hgsc.bcm.tmc.edu
            
             This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC. This
            sequence is generated as a part of the Human Microbiome Project
            (HMP), funded by the National Institutes of Health (NIH), National
            Human Genome Research Institute (NHGRI) Large-Scale Sequencing
            Research Network and the National Institute of Allergy and
            Infectious Diseases (NIAID) Microbial Genome Sequencing Centers
            Program. The mission of the HMP is to generate resources to enable
            the characterization of the human microbiota, the microbial
            communities living within human bodies, and analyze the role of
            these organisms in human health and disease. See
            http://www.hmpdacc.org/ for more information.
            
             The sequenced strain was obtained from ATCC. The genomic DNA was
            prepared from a single bacterial isolate. The sequence generated
            included at least 10 fold coverage of Roche/454 Lifesciences FLX
            fragment data and at least 8 fold clone coverage of Roche/454
            Lifesciences paired-end data. The Roche/454 Lifesciences sequence
            was assembled using the Roche/454 Lifescience Newbler assembler.
            This draft assembly meets the HMP draft quality standards (more
            than 90% of the genome is included in contigs, more than 90% of a
            core set of bacterial genes are found with > 30% identity and > 30%
            length; more than 90% of the bases in the assembly have more than 5
            fold sequence coverage, the contig N50 length is greater than 5kb,
            the scaffold N50 length is greater than 20kb, and there is less
            than 1 gap per 5kb).
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: Standard Draft
            Current Finishing Status :: Standard Draft
            Assembly Method          :: Newbler Assembler v. 2.3-04192010
            Genome Coverage          :: 23.34x
            Sequencing Technology    :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000213995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:42:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,683
            CDSs (total)                      :: 4,601
            Genes (coding)                    :: 4,546
            CDSs (with protein)               :: 4,546
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 24 of 55
            Pseudo Genes (incomplete)         :: 31 of 55
            Pseudo Genes (internal stop)      :: 10 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806970
                     /organism="Enterobacter hormaechei ATCC 49162"
                     /mol_type="genomic DNA"
                     /strain="ATCC 49162"
                     /sub_species="hormaechei"
                     /culture_collection="ATCC:49162"
                     /type_material="type strain of Enterobacter hormaechei"
                     /db_xref="HMP:9086"
                     /db_xref="HOMD:tax_634"
                     /db_xref="taxon:888063"
WGS         AFHR01000001-AFHR01000084
WGS_SCAFLD  NZ_GL892086-NZ_GL892099
//
LOCUS       NZ_CDXDVM010000000   6533893 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Cupriavidus metallidurans isolate MarMAG_000075, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDXDVM000000000
VERSION     NZ_CDXDVM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120956069
            Assembly: GCF_978022855.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Cupriavidus metallidurans (marine metagenome)
  ORGANISM  Cupriavidus metallidurans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Cupriavidus.
REFERENCE   1  (bases 1 to 6533893)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2026) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDXDVM000000000.1.
            The Cupriavidus metallidurans whole genome shotgun (WGS) project
            has the project accession NZ_CDXDVM000000000.  This version of the
            project (01) has the accession number NZ_CDXDVM010000000, and
            consists of sequences CDXDVM010000001-CDXDVM010000307.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_978022855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:10:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,219
            CDSs (total)                      :: 6,171
            Genes (coding)                    :: 6,038
            CDSs (with protein)               :: 6,038
            Genes (RNA)                       :: 48
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 17 of 133
            Pseudo Genes (incomplete)         :: 125 of 133
            Pseudo Genes (internal stop)      :: 4 of 133
            Pseudo Genes (multiple problems)  :: 13 of 133
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6533893
                     /organism="Cupriavidus metallidurans"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_000075"
                     /db_xref="taxon:119219"
                     /environmental_sample
                     /geo_loc_name="Atlantic Ocean"
                     /collection_date="2012-04-30"
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         CDXDVM010000001-CDXDVM010000307
WGS_SCAFLD  NZ_CDXDVM010000001-NZ_CDXDVM010000307
//
LOCUS       NZ_NPNW01000000      4871475 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain DS05262, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NPNW00000000
VERSION     NZ_NPNW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07448196
            Assembly: GCF_002278385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4871475)
  AUTHORS   Koh,T.H., Abdul Rahman,N., Teo,J.W.P., La,M.-V., Periaswamy,B. and
            Chen,S.L.
  TITLE     Putatitive Integrative Mobile Elements that Exploit the Xer
            Recombination Machinery Carrying blaIMI-type Carbapenemase Genes in
            the Enterobacter cloacae complex in Singapore
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4871475)
  AUTHORS   Koh,T.H., Abdul Rahman,N., Periaswamy,B. and Chen,S.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2017) Medicine / Infectious Diseases, National
            University of Singapore and Genome Institute of Singapore, 60
            Biopolis Street, 02-01, Singapore 138672, Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NPNW00000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_NPNW00000000.  This version of the
            project (01) has the accession number NZ_NPNW01000000, and consists
            of sequences NPNW01000001-NPNW01000048.
            Bacteria available from Koh Tse Hsien, Singapore General Hospital.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter roggenkampii' in January 2019.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_002278385.1
            Current Name        :: Enterobacter roggenkampii
            Previous Name       :: Enterobacter cloacae
            Date Updated        :: 2019-01-07
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_001729805.1
            A1 Name             :: Enterobacter roggenkampii
            A1 ANI              :: 98.63316%
            A1 Query Coverage   :: 89.61%
            A1 Subject Coverage :: 89.09%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_001997105.1
            A2 Name             :: Enterobacter cloacae
            A2 ANI              :: 88.96887%
            A2 Query Coverage   :: 80.51%
            A2 Subject Coverage :: 71.88%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq 4000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002278385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:57:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,726
            CDSs (total)                      :: 4,627
            Genes (coding)                    :: 4,552
            CDSs (with protein)               :: 4,552
            Genes (RNA)                       :: 99
            rRNAs                             :: 8, 5, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 4, 5, 6 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 17 of 75
            Pseudo Genes (incomplete)         :: 57 of 75
            Pseudo Genes (internal stop)      :: 10 of 75
            Pseudo Genes (multiple problems)  :: 9 of 75
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4871475
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="DS05262"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="Singapore"
                     /lat_lon="1.32 N 103.91 E"
                     /collection_date="2013-04-03"
                     /collected_by="Koh Tse Hsien, Singapore General Hospital"
WGS         NPNW01000001-NPNW01000048
WGS_SCAFLD  NZ_NPNW01000001-NZ_NPNW01000048
//
LOCUS       NZ_ADZA01000000      2527192 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL045PA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADZA00000000
VERSION     NZ_ADZA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189219
            Assembly: GCF_000144365.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL045PA1
  ORGANISM  Cutibacterium acnes HL045PA1
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2527192)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADZA00000000.1.
            The Cutibacterium acnes HL045PA1 whole genome shotgun (WGS) project
            has the project accession NZ_ADZA00000000.  This version of the
            project (01) has the accession number NZ_ADZA01000000, and consists
            of sequences ADZA01000001-ADZA01000036.
            Propionibacterium acnes HL045PA1 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL045PA1 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 66.4x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000144365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:23:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,505
            CDSs (total)                      :: 2,453
            Genes (coding)                    :: 2,384
            CDSs (with protein)               :: 2,384
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 27 of 69
            Pseudo Genes (incomplete)         :: 34 of 69
            Pseudo Genes (internal stop)      :: 18 of 69
            Pseudo Genes (multiple problems)  :: 8 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527192
                     /organism="Cutibacterium acnes HL045PA1"
                     /mol_type="genomic DNA"
                     /strain="HL045PA1"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9566"
                     /db_xref="taxon:765068"
WGS         ADZA01000001-ADZA01000036
WGS_SCAFLD  NZ_GL383478-NZ_GL383496
//
LOCUS       NZ_ADXT01000000      2477393 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL083PA2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADXT00000000
VERSION     NZ_ADXT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189241
            Assembly: GCF_000145155.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL083PA2
  ORGANISM  Cutibacterium acnes HL083PA2
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2477393)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2011) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
REFERENCE   2  (bases 1 to 2477393)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUL-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADXT00000000.1.
            The Cutibacterium acnes HL083PA2 whole genome shotgun (WGS) project
            has the project accession NZ_ADXT00000000.  This version of the
            project (01) has the accession number NZ_ADXT01000000, and consists
            of sequences ADXT01000001-ADXT01000024.
            Propionibacterium acnes HL083PA2 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL083PA2 genome.
            
            Annotation was added to the contigs in April 2011.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 68x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000145155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:24:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,436
            CDSs (total)                      :: 2,384
            Genes (coding)                    :: 2,315
            CDSs (with protein)               :: 2,315
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 31 of 69
            Pseudo Genes (incomplete)         :: 28 of 69
            Pseudo Genes (internal stop)      :: 20 of 69
            Pseudo Genes (multiple problems)  :: 7 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477393
                     /organism="Cutibacterium acnes HL083PA2"
                     /mol_type="genomic DNA"
                     /strain="HL083PA2"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9586"
                     /db_xref="taxon:765088"
WGS         ADXT01000001-ADXT01000024
WGS_SCAFLD  NZ_GL384220-NZ_GL384233
//
LOCUS       NZ_ADXR01000000      2522151 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL072PA2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADXR00000000
VERSION     NZ_ADXR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189235
            Assembly: GCF_000145335.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL072PA2
  ORGANISM  Cutibacterium acnes HL072PA2
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2522151)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADXR00000000.1.
            The Cutibacterium acnes HL072PA2 whole genome shotgun (WGS) project
            has the project accession NZ_ADXR00000000.  This version of the
            project (01) has the accession number NZ_ADXR01000000, and consists
            of sequences ADXR01000001-ADXR01000076.
            Propionibacterium acnes HL072PA2 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL072PA2 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 66.8x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000145335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:27:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,505
            CDSs (total)                      :: 2,452
            Genes (coding)                    :: 2,383
            CDSs (with protein)               :: 2,383
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 23 of 69
            Pseudo Genes (incomplete)         :: 39 of 69
            Pseudo Genes (internal stop)      :: 16 of 69
            Pseudo Genes (multiple problems)  :: 7 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522151
                     /organism="Cutibacterium acnes HL072PA2"
                     /mol_type="genomic DNA"
                     /strain="HL072PA2"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9573"
                     /db_xref="taxon:765075"
WGS         ADXR01000001-ADXR01000076
WGS_SCAFLD  NZ_GL384345-NZ_GL384375
//
LOCUS       NZ_NGRQ01000000      4794415 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter hormaechei strain MGH184, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NGRQ00000000
VERSION     NZ_NGRQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04521933
            Assembly: GCF_002151965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4794415)
  AUTHORS   Earl,A., Cerqueira,G., Kirby,J., Ferraro,M., Onderdonk,A.,
            Delaney,M., Kim,D., Gussin,G., Young,S., Abouelleil,A., Cao,P.,
            Chapman,S., Cusick,C., Shea,T., Neafsey,D., Nusbaum,C. and
            Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genomic
            Center for Infectious Diseases
  TITLE     The Genome Sequence of Enterobacter cloacae complex MGH184
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4794415)
  AUTHORS   Earl,A., Cerqueira,G., Kirby,J., Ferraro,M., Onderdonk,A.,
            Delaney,M., Kim,D., Gussin,G., Young,S., Abouelleil,A., Cao,P.,
            Chapman,S., Cusick,C., Shea,T., Neafsey,D., Nusbaum,C. and
            Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genomic
            Center for Infectious Diseases
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAY-2017) The Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NGRQ00000000.1.
            The Enterobacter hormaechei whole genome shotgun (WGS) project has
            the project accession NZ_NGRQ00000000.  This version of the project
            (01) has the accession number NZ_NGRQ01000000, and consists of
            sequences NGRQ01000001-NGRQ01000003.
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter hormaechei' in November 2018.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_002151965.1
            Current Name        :: Enterobacter hormaechei
            Previous Name       :: Enterobacter cloacae
            Date Updated        :: 2018-11-14
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_001729725.1
            A1 Name             :: Enterobacter hormaechei
            A1 ANI              :: 99.24647%
            A1 Query Coverage   :: 92.27%
            A1 Subject Coverage :: 92.5%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000025565.1
            A2 Name             :: Enterobacter cloacae
            A2 ANI              :: 87.36392%
            A2 Query Coverage   :: 80.97%
            A2 Subject Coverage :: 69.33%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R48559
            Genome Coverage       :: 89.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002151965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:52:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,507
            CDSs (total)                      :: 4,418
            Genes (coding)                    :: 4,360
            CDSs (with protein)               :: 4,360
            Genes (RNA)                       :: 89
            rRNAs                             :: 9, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 3, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 69
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 26 of 58
            Pseudo Genes (incomplete)         :: 33 of 58
            Pseudo Genes (internal stop)      :: 13 of 58
            Pseudo Genes (multiple problems)  :: 12 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4794415
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="MGH184"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /geo_loc_name="USA: Massachusetts, Boston"
                     /collection_date="2015"
                     /collected_by="Massachusetts General Hospital"
WGS         NGRQ01000001-NGRQ01000003
WGS_SCAFLD  NZ_NGRQ01000001-NZ_NGRQ01000003
//
LOCUS       NZ_ADZH01000000      2477780 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL013PA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADZH00000000
VERSION     NZ_ADZH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189199
            Assembly: GCF_000145575.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL013PA1
  ORGANISM  Cutibacterium acnes HL013PA1
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2477780)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
REFERENCE   2  (bases 1 to 2477780)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADZH00000000.1.
            The Cutibacterium acnes HL013PA1 whole genome shotgun (WGS) project
            has the project accession NZ_ADZH00000000.  This version of the
            project (01) has the accession number NZ_ADZH01000000, and consists
            of sequences ADZH01000001-ADZH01000026.
            Propionibacterium acnes HL013PA1 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project.This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL013PA1 genome.
            Propionibacterium acnes HL013PA1 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project.This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR)  database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL013PA1 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 67.5x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000145575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:29:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,439
            CDSs (total)                      :: 2,387
            Genes (coding)                    :: 2,317
            CDSs (with protein)               :: 2,317
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 29 of 70
            Pseudo Genes (incomplete)         :: 32 of 70
            Pseudo Genes (internal stop)      :: 20 of 70
            Pseudo Genes (multiple problems)  :: 8 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477780
                     /organism="Cutibacterium acnes HL013PA1"
                     /mol_type="genomic DNA"
                     /strain="HL013PA1"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9567"
                     /db_xref="taxon:765069"
WGS         ADZH01000001-ADZH01000026
WGS_SCAFLD  NZ_GL384608-NZ_GL384619
//
LOCUS       NZ_MKEQ01000000      4883895 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter hormaechei ATCC 49162, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MKEQ00000000
VERSION     NZ_MKEQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05787340
            Assembly: GCF_001875655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter hormaechei ATCC 49162
  ORGANISM  Enterobacter hormaechei ATCC 49162
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4883895)
  AUTHORS   Wang,S. and Zhu,B.
  TITLE     Enterobacter hormaechei strain ATCC 49162
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4883895)
  AUTHORS   Wang,S. and Zhu,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2016) College of Life Science, Zhejiang Sci-Tech
            University, Xiasha Higher Education Zone, No. 928, 2nd Street,
            Hangzhou, Zhejiang 310018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MKEQ00000000.1.
            The Enterobacter hormaechei ATCC 49162 whole genome shotgun (WGS)
            project has the project accession NZ_MKEQ00000000.  This version of
            the project (01) has the accession number NZ_MKEQ01000000, and
            consists of sequences MKEQ01000001-MKEQ01000004.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: HGAP v. 3.0
            Genome Coverage       :: 68.0x
            Sequencing Technology :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001875655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:23:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,768
            CDSs (total)                      :: 4,643
            Genes (coding)                    :: 4,569
            CDSs (with protein)               :: 4,569
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 9, 8 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 92
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 39 of 74
            Pseudo Genes (incomplete)         :: 38 of 74
            Pseudo Genes (internal stop)      :: 10 of 74
            Pseudo Genes (multiple problems)  :: 11 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4883895
                     /organism="Enterobacter hormaechei ATCC 49162"
                     /mol_type="genomic DNA"
                     /strain="ATCC 49162"
                     /sub_species="hormaechei"
                     /culture_collection="ATCC:49162"
                     /type_material="type strain of Enterobacter hormaechei"
                     /db_xref="taxon:888063"
WGS         MKEQ01000001-MKEQ01000004
WGS_SCAFLD  NZ_MKEQ01000001-NZ_MKEQ01000004
//
LOCUS       NZ_ADYW01000000      2474683 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL059PA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADYW00000000
VERSION     NZ_ADYW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189228
            Assembly: GCF_000144855.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL059PA1
  ORGANISM  Cutibacterium acnes HL059PA1
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2474683)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
REFERENCE   2  (bases 1 to 2474683)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADYW00000000.1.
            The Cutibacterium acnes HL059PA1 whole genome shotgun (WGS) project
            has the project accession NZ_ADYW00000000.  This version of the
            project (01) has the accession number NZ_ADYW01000000, and consists
            of sequences ADYW01000001-ADYW01000040.
            Propionibacterium acnes HL059PA1 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL059PA1 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 69.2x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000144855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:29:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,438
            CDSs (total)                      :: 2,383
            Genes (coding)                    :: 2,313
            CDSs (with protein)               :: 2,313
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 32 of 70
            Pseudo Genes (incomplete)         :: 29 of 70
            Pseudo Genes (internal stop)      :: 19 of 70
            Pseudo Genes (multiple problems)  :: 7 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474683
                     /organism="Cutibacterium acnes HL059PA1"
                     /mol_type="genomic DNA"
                     /strain="HL059PA1"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9589"
                     /db_xref="taxon:765091"
WGS         ADYW01000001-ADYW01000040
WGS_SCAFLD  NZ_GL383913-NZ_GL383932
//
LOCUS       NZ_ADZI01000000      2476029 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL037PA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADZI00000000
VERSION     NZ_ADZI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189211
            Assembly: GCF_000145555.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL037PA1
  ORGANISM  Cutibacterium acnes HL037PA1
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2476029)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADZI00000000.1.
            The Cutibacterium acnes HL037PA1 whole genome shotgun (WGS) project
            has the project accession NZ_ADZI00000000.  This version of the
            project (01) has the accession number NZ_ADZI01000000, and consists
            of sequences ADZI01000001-ADZI01000034.
            Propionibacterium acnes HL037PA1 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL037PA1 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 67.3x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000145555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:32:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,442
            CDSs (total)                      :: 2,389
            Genes (coding)                    :: 2,322
            CDSs (with protein)               :: 2,322
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 3 (16S, 23S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 25 of 67
            Pseudo Genes (incomplete)         :: 30 of 67
            Pseudo Genes (internal stop)      :: 26 of 67
            Pseudo Genes (multiple problems)  :: 11 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476029
                     /organism="Cutibacterium acnes HL037PA1"
                     /mol_type="genomic DNA"
                     /strain="HL037PA1"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9620"
                     /db_xref="taxon:765122"
WGS         ADZI01000001-ADZI01000034
WGS_SCAFLD  NZ_GL384592-NZ_GL384607
//
LOCUS       NZ_ADYU01000000      2476130 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL036PA2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADYU00000000
VERSION     NZ_ADYU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189209
            Assembly: GCF_000144585.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL036PA2
  ORGANISM  Cutibacterium acnes HL036PA2
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2476130)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
REFERENCE   2  (bases 1 to 2476130)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADYU00000000.1.
            The Cutibacterium acnes HL036PA2 whole genome shotgun (WGS) project
            has the project accession NZ_ADYU00000000.  This version of the
            project (01) has the accession number NZ_ADYU01000000, and consists
            of sequences ADYU01000001-ADYU01000024.
            Propionibacterium acnes HL036PA2 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL036PA2 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 69.3x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000144585.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:27:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,436
            CDSs (total)                      :: 2,384
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 32 of 68
            Pseudo Genes (incomplete)         :: 29 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 6 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476130
                     /organism="Cutibacterium acnes HL036PA2"
                     /mol_type="genomic DNA"
                     /strain="HL036PA2"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9605"
                     /db_xref="taxon:765107"
WGS         ADYU01000001-ADYU01000024
WGS_SCAFLD  NZ_GL383716-NZ_GL383728
//
LOCUS       NZ_RXSI01000000      4822753 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain WCHEN090037, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RXSI00000000
VERSION     NZ_RXSI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10525002
            Assembly: GCF_003964365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4822753)
  AUTHORS   Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z.
  TITLE     The Batch Genome Submission of Enterobacter spp. strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4822753)
  AUTHORS   Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RXSI00000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_RXSI00000000.  This version of the
            project (01) has the accession number NZ_RXSI01000000, and consists
            of sequences RXSI01000001-RXSI01000065.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003964365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:34:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,661
            CDSs (total)                      :: 4,579
            Genes (coding)                    :: 4,503
            CDSs (with protein)               :: 4,503
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 32 of 76
            Pseudo Genes (incomplete)         :: 49 of 76
            Pseudo Genes (internal stop)      :: 13 of 76
            Pseudo Genes (multiple problems)  :: 15 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4822753
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="WCHEN090037"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2016-08"
WGS         RXSI01000001-RXSI01000065
WGS_SCAFLD  NZ_RXSI01000001-NZ_RXSI01000065
//
LOCUS       NZ_NDHO01000000      2488098 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Corynebacterium diphtheriae strain rz597, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NDHO00000000
VERSION     NZ_NDHO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06311216
            Assembly: GCF_002115185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Corynebacterium diphtheriae
  ORGANISM  Corynebacterium diphtheriae
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Corynebacteriaceae; Corynebacterium.
REFERENCE   1  (bases 1 to 2488098)
  AUTHORS   Ahmad,N., Mohd Khalid,M.K.N., Hashim,R., Yi Fen,S.H., Liow,Y.L.,
            Abd Wahab,M.A., Hamzah,H., Dahalan,N.A. and Seradja,V.
  TITLE     Draft genomes of Corynebacterium diphtheriae strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2488098)
  AUTHORS   Ahmad,N., Mohd Khalid,M.K.N., Hashim,R., Yi Fen,S.H., Liow,Y.L.,
            Abd Wahab,M.A., Hamzah,H., Dahalan,N.A. and Seradja,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-APR-2017) Bacteriology Unit, Institute for Medical
            Research, Jalan Pahang, Kuala Lumpur 50588, Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NDHO00000000.1.
            The Corynebacterium diphtheriae whole genome shotgun (WGS) project
            has the project accession NZ_NDHO00000000.  This version of the
            project (01) has the accession number NZ_NDHO01000000, and consists
            of sequences NDHO01000001-NDHO01000029.
            Bacteria available from Dr Norazah Ahmad, Bacteriology Unit,
            Institute for Medical Research, Jalan Pahang, 50588 Kuala Lumpur.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-DEC-2016
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 344x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002115185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,400
            CDSs (total)                      :: 2,342
            Genes (coding)                    :: 2,267
            CDSs (with protein)               :: 2,267
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 36 of 75
            Pseudo Genes (incomplete)         :: 52 of 75
            Pseudo Genes (internal stop)      :: 17 of 75
            Pseudo Genes (multiple problems)  :: 24 of 75
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488098
                     /organism="Corynebacterium diphtheriae"
                     /mol_type="genomic DNA"
                     /strain="rz597"
                     /isolation_source="throat swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:1717"
                     /geo_loc_name="Malaysia: Sg. Buloh"
                     /lat_lon="3.2093 N 101.561 E"
                     /collection_date="2016-08-23"
                     /collected_by="Institute for Medical Research (IMR)"
WGS         NDHO01000001-NDHO01000029
WGS_SCAFLD  NZ_NDHO01000001-NZ_NDHO01000029
//
LOCUS       NZ_ADZM01000000      2474419 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes HL005PA3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_ADZM00000000
VERSION     NZ_ADZM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00189196
            Assembly: GCF_000144345.1
KEYWORDS    WGS; HIGH_QUALITY_DRAFT; RefSeq.
SOURCE      Cutibacterium acnes HL005PA3
  ORGANISM  Cutibacterium acnes HL005PA3
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2474419)
  AUTHORS   Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B.,
            Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C.,
            Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C.,
            Mitreva,M., Hou,S., Chen,J., Wollam,A., Pepin,K.H., Johnson,M.,
            Bhonagiri,V., Zhang,X., Suruliraj,S., Warren,W., Chinwalla,A.,
            Mardis,E.R. and Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2010) Genome Sequencing Center, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            ADZM00000000.1.
            The Cutibacterium acnes HL005PA3 whole genome shotgun (WGS) project
            has the project accession NZ_ADZM00000000.  This version of the
            project (01) has the accession number NZ_ADZM01000000, and consists
            of sequences ADZM01000001-ADZM01000027.
            Propionibacterium acnes HL005PA3 (No 16S rRNA gene available) is a
            member of the Actinobacteria division of the domain bacteria and
            has been isolated from the skin.
            
            This is a reference genome for the Human Microbiome Project. This
            project is co-owned with the Human Microbiome Project DACC.
            
            The bacterial isolate and source DNA was provided by Huiying Li,
            Ph.D. Department of Molecular and Medical Pharmacology, University
            of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building
            114, Los Angeles, CA 90095, USA. This project is funded by the
            following grant support: 'Metagenomic study of the human skin
            microbiome associated with acne' (1UH2AR057503).
            
            Coding sequences were predicted using GeneMark v3.3 and Glimmer2
            v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
            blasted against NCBI's non-redundant (NR) database and predictions
            generated based on protein alignments. tRNA genes were determined
            using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and
            Rfam v8.0. Gene names are generated at the contig level and may not
            necessarily reflect any known order or orientation between contigs.
            
            The National Human Genome Research Institute (NHGRI), National
            Institutes of Health (NIH) Acne Demonstration Project is funding
            the sequence characterization of the Propionibacterium acnes
            HL005PA3 genome.
            
            Annotation was added to the contigs in December 2010.
            Product names were updated in June 2013.
            
            ##Genome-Assembly-Data-START##
            Finishing Goal           :: High-Quality Draft
            Current Finishing Status :: High-Quality Draft
            Assembly Method          :: Velvet v. 0.7.57
            Genome Coverage          :: 68.4x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000144345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,440
            CDSs (total)                      :: 2,388
            Genes (coding)                    :: 2,318
            CDSs (with protein)               :: 2,318
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 30 of 70
            Pseudo Genes (incomplete)         :: 33 of 70
            Pseudo Genes (internal stop)      :: 15 of 70
            Pseudo Genes (multiple problems)  :: 6 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474419
                     /organism="Cutibacterium acnes HL005PA3"
                     /mol_type="genomic DNA"
                     /strain="HL005PA3"
                     /isolation_source="biological product [ENVO:02000043]"
                     /host="Homo sapiens"
                     /db_xref="HMP:9596"
                     /db_xref="taxon:765098"
WGS         ADZM01000001-ADZM01000027
WGS_SCAFLD  NZ_GL383461-NZ_GL383477
//
LOCUS       NZ_SCHU01000000      3593184 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus casseliflavus strain L5-B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SCHU00000000
VERSION     NZ_SCHU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10744161
            Assembly: GCF_004099805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus casseliflavus
  ORGANISM  Enterococcus casseliflavus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3593184)
  AUTHORS   Ayala,D.I., Cook,P.W., Franco,J.G., Bugarel,M., Kottapalli,K.R.,
            Loneragan,G.H., Brashears,M. and Nightingale,K.
  TITLE     A systematic approach to identify and characterize the
            effectiveness and safety of novel probiotic strains to control
            foodborne pathogens along the food continuum through combined
            genotypic and phenotypic assays
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3593184)
  AUTHORS   Ayala,D.I., Cook,P.W., Franco,J.G., Bugarel,M., Kottapalli,K.R.,
            Loneragan,G.H., Brashears,M. and Nightingale,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2019) Animal and Food Sciences, Texas Tech
            University, 1008 Canton Ave, Lubbock, TX 79409, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SCHU00000000.1.
            The Enterococcus casseliflavus whole genome shotgun (WGS) project
            has the project accession NZ_SCHU00000000.  This version of the
            project (01) has the accession number NZ_SCHU01000000, and consists
            of sequences SCHU01000001-SCHU01000191.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004099805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,453
            CDSs (total)                      :: 3,388
            Genes (coding)                    :: 3,335
            CDSs (with protein)               :: 3,335
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 19 of 53
            Pseudo Genes (incomplete)         :: 31 of 53
            Pseudo Genes (internal stop)      :: 13 of 53
            Pseudo Genes (multiple problems)  :: 8 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3593184
                     /organism="Enterococcus casseliflavus"
                     /mol_type="genomic DNA"
                     /strain="L5-B"
                     /host="bovine"
                     /db_xref="taxon:37734"
                     /geo_loc_name="USA"
                     /collection_date="2013"
WGS         SCHU01000001-SCHU01000191
WGS_SCAFLD  NZ_SCHU01000001-NZ_SCHU01000191
//
LOCUS       NZ_PVCC01000000      4481684 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cronobacter sakazakii strain MOD1_Jor44, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVCC00000000
VERSION     NZ_PVCC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08611273
            Assembly: GCF_002974455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cronobacter sakazakii
  ORGANISM  Cronobacter sakazakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Cronobacter.
REFERENCE   1  (bases 1 to 4481684)
  AUTHORS   Gopinath,G.R. and Tall,B.D.
  TITLE     29 strains of Cronobacter isolates from low moisture products
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4481684)
  AUTHORS   Gopinath,G.R. and Tall,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2018) US FDA, CFSAN, 8301 Muirkirk Road, Laurel,
            MD 20708, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVCC00000000.1.
            The Cronobacter sakazakii whole genome shotgun (WGS) project has
            the project accession NZ_PVCC00000000.  This version of the project
            (01) has the accession number NZ_PVCC01000000, and consists of
            sequences PVCC01000001-PVCC01000042.
            Bacteria available from ben.tall@fda.hhs.gov.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 23
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002974455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:18:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,269
            CDSs (total)                      :: 4,190
            Genes (coding)                    :: 4,143
            CDSs (with protein)               :: 4,143
            Genes (RNA)                       :: 79
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 16 of 47
            Pseudo Genes (incomplete)         :: 25 of 47
            Pseudo Genes (internal stop)      :: 7 of 47
            Pseudo Genes (multiple problems)  :: 1 of 47
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4481684
                     /organism="Cronobacter sakazakii"
                     /mol_type="genomic DNA"
                     /strain="MOD1_Jor44"
                     /isolation_source="spice"
                     /db_xref="taxon:28141"
                     /geo_loc_name="USA"
                     /collection_date="2008"
                     /collected_by="United States Food and Drug Administration|
                     Center for Food Safety and Applied Nutrition| Office Of
                     Applied Research And Safety Assessment"
WGS         PVCC01000001-PVCC01000042
WGS_SCAFLD  NZ_PVCC01000001-NZ_PVCC01000042
//
LOCUS       NZ_RYZS01000000      4767293 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus avium strain LC0559/18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RYZS00000000
VERSION     NZ_RYZS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10617875
            Assembly: GCF_004010255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus avium
  ORGANISM  Enterococcus avium
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 4767293)
  AUTHORS   Bernasconi,O.J., Luzzaro,F. and Endimiani,A.
  TITLE     A novel vanA-carrying plasmid in a clinical isolate of Enterococcus
            avium
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4767293)
  AUTHORS   Bernasconi,O.J., Luzzaro,F. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2018) Institute for Infectious Diseases,
            University of Bern, Friedbuelstrasse 51, Bern 3001, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RYZS00000000.1.
            The Enterococcus avium whole genome shotgun (WGS) project has the
            project accession NZ_RYZS00000000.  This version of the project
            (01) has the accession number NZ_RYZS01000000, and consists of
            sequences RYZS01000001-RYZS01000004.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CANU v. 1.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004010255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:05:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,858
            CDSs (total)                      :: 4,763
            Genes (coding)                    :: 4,583
            CDSs (with protein)               :: 4,583
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 122 of 180
            Pseudo Genes (incomplete)         :: 64 of 180
            Pseudo Genes (internal stop)      :: 20 of 180
            Pseudo Genes (multiple problems)  :: 25 of 180
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4767293
                     /organism="Enterococcus avium"
                     /mol_type="genomic DNA"
                     /strain="LC0559/18"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:33945"
                     /geo_loc_name="Italy: Lecco"
                     /lat_lon="45.852062 N 9.415055 E"
                     /collection_date="2018-02-22"
                     /collected_by="A. Manzoni Hospital"
WGS         RYZS01000001-RYZS01000004
WGS_SCAFLD  NZ_CM013039-NZ_CM013040
WGS_SCAFLD  NZ_RYZS01000001-NZ_RYZS01000002
//
LOCUS       NZ_NHQM01000000      4538773 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cronobacter sakazakii strain MOD1-comp19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NHQM00000000
VERSION     NZ_NHQM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04329634
            Assembly: GCF_002198815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cronobacter sakazakii
  ORGANISM  Cronobacter sakazakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Cronobacter.
REFERENCE   1  (bases 1 to 4538773)
  AUTHORS   Chase,H., Gopinath,G. and Tall,B.
  TITLE     Characterization of Cronobacter sakazakii serotype O:2, Sequence
            type 64 strains, isolated from clinical and the environment samples
            from powdered infant formula and dried milk powder manufacturing
            facilities which can utilize malonate
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4538773)
  AUTHORS   Chase,H., Gopinath,G. and Tall,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2017) US FDA, CFSAN, 8301 Muirkirk Road, Laurel,
            MD 20708, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHQM00000000.1.
            The Cronobacter sakazakii whole genome shotgun (WGS) project has
            the project accession NZ_NHQM00000000.  This version of the project
            (01) has the accession number NZ_NHQM01000000, and consists of
            sequences NHQM01000001-NHQM01000039.
            Bacteria and source DNA available from Ben D. Tall, PhD.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-DEC-2016
            Assembly Method        :: CLC NGS Cell v. 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002198815.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:52:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,346
            CDSs (total)                      :: 4,257
            Genes (coding)                    :: 4,211
            CDSs (with protein)               :: 4,211
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 7 of 46
            Pseudo Genes (incomplete)         :: 35 of 46
            Pseudo Genes (internal stop)      :: 9 of 46
            Pseudo Genes (multiple problems)  :: 4 of 46
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4538773
                     /organism="Cronobacter sakazakii"
                     /mol_type="genomic DNA"
                     /strain="MOD1-comp19"
                     /isolation_source="environment"
                     /db_xref="taxon:28141"
                     /geo_loc_name="USA"
                     /collected_by="United States Food and Drug Administration"
WGS         NHQM01000001-NHQM01000039
WGS_SCAFLD  NZ_NHQM01000001-NZ_NHQM01000039
//
LOCUS       NZ_JWGJ01000000      4851967 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter asburiae strain 1011_EASB, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWGJ00000000
VERSION     NZ_JWGJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03196973
            Assembly: GCF_001052635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter asburiae
  ORGANISM  Enterobacter asburiae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4851967)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4851967)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWGJ00000000.1.
            The Enterobacter asburiae whole genome shotgun (WGS) project has
            the project accession NZ_JWGJ00000000.  This version of the project
            (01) has the accession number NZ_JWGJ01000000, and consists of
            sequences JWGJ01000001-JWGJ01000165.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 27x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001052635.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:01:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,723
            CDSs (total)                      :: 4,685
            Genes (coding)                    :: 4,606
            CDSs (with protein)               :: 4,606
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 29
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 19 of 79
            Pseudo Genes (incomplete)         :: 60 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 8 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4851967
                     /organism="Enterobacter asburiae"
                     /mol_type="genomic DNA"
                     /strain="1011_EASB"
                     /host="Homo sapiens"
                     /db_xref="taxon:61645"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JWGJ01000001-JWGJ01000165
WGS_SCAFLD  NZ_JWGJ01000001-NZ_JWGJ01000165
//
LOCUS       NZ_JAFKCL010000000   5144679 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain BK34126, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFKCL000000000
VERSION     NZ_JAFKCL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18062302
            Assembly: GCF_018881465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 5144679)
  AUTHORS   Klein,S., Boutin,S., Kocer,K., Fiedler,M.O., Storzinger,D.,
            Weigand,M.A., Tan,B., Richter,D., Rupp,C., Mieth,M., Mehrabi,A.,
            Hackert,T., Zimmermann,S., Heeg,K. and Nurjadi,D.
  TITLE     Rapid Development of Cefiderocol Resistance in Carbapenem-resistant
            Enterobacter cloacae During Therapy Is Associated With
            Heterogeneous Mutations in the Catecholate Siderophore Receptor
            cirA
  JOURNAL   Clin Infect Dis 74 (5), 905-908 (2022)
   PUBMED   34079986
REFERENCE   2  (bases 1 to 5144679)
  AUTHORS   Nurjadi,D. and Boutin,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2021) Medical Microbiology and Hygiene,
            Heidelberg University Hospital, Im Neuenheimer Feld 324, Heidelberg
            69120, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFKCL000000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_JAFKCL000000000.  This version of the
            project (01) has the accession number NZ_JAFKCL010000000, and
            consists of sequences JAFKCL010000001-JAFKCL010000053.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: spades v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41x
            Sequencing Technology  :: Illumina Miseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018881465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:52:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,999
            CDSs (total)                      :: 4,906
            Genes (coding)                    :: 4,826
            CDSs (with protein)               :: 4,826
            Genes (RNA)                       :: 93
            rRNAs                             :: 8, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 30 of 80
            Pseudo Genes (incomplete)         :: 61 of 80
            Pseudo Genes (internal stop)      :: 11 of 80
            Pseudo Genes (multiple problems)  :: 19 of 80
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5144679
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="BK34126"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="Germany: Heidelberg"
                     /lat_lon="49.40 N 8.69 E"
                     /collection_date="2020-10-14"
                     /collected_by="University Hospital Heidelberg"
WGS         JAFKCL010000001-JAFKCL010000053
WGS_SCAFLD  NZ_JAFKCL010000001-NZ_JAFKCL010000053
//
LOCUS       NZ_JAFKCM010000000   5144374 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain BK34128, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFKCM000000000
VERSION     NZ_JAFKCM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18062303
            Assembly: GCF_018881445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 5144374)
  AUTHORS   Klein,S., Boutin,S., Kocer,K., Fiedler,M.O., Storzinger,D.,
            Weigand,M.A., Tan,B., Richter,D., Rupp,C., Mieth,M., Mehrabi,A.,
            Hackert,T., Zimmermann,S., Heeg,K. and Nurjadi,D.
  TITLE     Rapid Development of Cefiderocol Resistance in Carbapenem-resistant
            Enterobacter cloacae During Therapy Is Associated With
            Heterogeneous Mutations in the Catecholate Siderophore Receptor
            cirA
  JOURNAL   Clin Infect Dis 74 (5), 905-908 (2022)
   PUBMED   34079986
REFERENCE   2  (bases 1 to 5144374)
  AUTHORS   Nurjadi,D. and Boutin,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2021) Medical Microbiology and Hygiene,
            Heidelberg University Hospital, Im Neuenheimer Feld 324, Heidelberg
            69120, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFKCM000000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_JAFKCM000000000.  This version of the
            project (01) has the accession number NZ_JAFKCM010000000, and
            consists of sequences JAFKCM010000001-JAFKCM010000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: spades v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 41x
            Sequencing Technology  :: Illumina Miseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018881445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:59:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,999
            CDSs (total)                      :: 4,908
            Genes (coding)                    :: 4,826
            CDSs (with protein)               :: 4,826
            Genes (RNA)                       :: 91
            rRNAs                             :: 8, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 30 of 82
            Pseudo Genes (incomplete)         :: 63 of 82
            Pseudo Genes (internal stop)      :: 11 of 82
            Pseudo Genes (multiple problems)  :: 19 of 82
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5144374
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="BK34128"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="Germany: Heidelberg"
                     /lat_lon="49.40 N 8.69 E"
                     /collection_date="2020-10-15"
                     /collected_by="University Hospital Heidelberg"
WGS         JAFKCM010000001-JAFKCM010000051
WGS_SCAFLD  NZ_JAFKCM010000001-NZ_JAFKCM010000051
//
LOCUS       NZ_JAFKCR010000000   5145003 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain BK34287, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFKCR000000000
VERSION     NZ_JAFKCR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18062308
            Assembly: GCF_018881315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 5145003)
  AUTHORS   Klein,S., Boutin,S., Kocer,K., Fiedler,M.O., Storzinger,D.,
            Weigand,M.A., Tan,B., Richter,D., Rupp,C., Mieth,M., Mehrabi,A.,
            Hackert,T., Zimmermann,S., Heeg,K. and Nurjadi,D.
  TITLE     Rapid Development of Cefiderocol Resistance in Carbapenem-resistant
            Enterobacter cloacae During Therapy Is Associated With
            Heterogeneous Mutations in the Catecholate Siderophore Receptor
            cirA
  JOURNAL   Clin Infect Dis 74 (5), 905-908 (2022)
   PUBMED   34079986
REFERENCE   2  (bases 1 to 5145003)
  AUTHORS   Nurjadi,D. and Boutin,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-FEB-2021) Medical Microbiology and Hygiene,
            Heidelberg University Hospital, Im Neuenheimer Feld 324, Heidelberg
            69120, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFKCR000000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_JAFKCR000000000.  This version of the
            project (01) has the accession number NZ_JAFKCR010000000, and
            consists of sequences JAFKCR010000001-JAFKCR010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: spades v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37x
            Sequencing Technology  :: Illumina Miseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018881315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:57:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,000
            CDSs (total)                      :: 4,906
            Genes (coding)                    :: 4,823
            CDSs (with protein)               :: 4,823
            Genes (RNA)                       :: 94
            rRNAs                             :: 8, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 32 of 83
            Pseudo Genes (incomplete)         :: 63 of 83
            Pseudo Genes (internal stop)      :: 11 of 83
            Pseudo Genes (multiple problems)  :: 20 of 83
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5145003
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="BK34287"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="Germany: Heidelberg"
                     /lat_lon="49.40 N 8.69 E"
                     /collection_date="2020-11-12"
                     /collected_by="University Hospital Heidelberg"
WGS         JAFKCR010000001-JAFKCR010000056
WGS_SCAFLD  NZ_JAFKCR010000001-NZ_JAFKCR010000056
//
LOCUS       NZ_PVCY01000000      4400582 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cronobacter sakazakii strain MOD1_LR721, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVCY00000000
VERSION     NZ_PVCY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08611285
            Assembly: GCF_002974855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cronobacter sakazakii
  ORGANISM  Cronobacter sakazakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Cronobacter.
REFERENCE   1  (bases 1 to 4400582)
  AUTHORS   Gopinath,G.R. and Tall,B.D.
  TITLE     29 strains of Cronobacter isolates from low moisture products
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4400582)
  AUTHORS   Gopinath,G.R. and Tall,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2018) US FDA, CFSAN, 8301 Muirkirk Road, Laurel,
            MD 20708, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVCY00000000.1.
            The Cronobacter sakazakii whole genome shotgun (WGS) project has
            the project accession NZ_PVCY00000000.  This version of the project
            (01) has the accession number NZ_PVCY01000000, and consists of
            sequences PVCY01000001-PVCY01000033.
            Bacteria available from ben.tall@fda.hhs.gov.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002974855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:10:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,159
            CDSs (total)                      :: 4,073
            Genes (coding)                    :: 4,024
            CDSs (with protein)               :: 4,024
            Genes (RNA)                       :: 86
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 21 of 49
            Pseudo Genes (incomplete)         :: 24 of 49
            Pseudo Genes (internal stop)      :: 9 of 49
            Pseudo Genes (multiple problems)  :: 5 of 49
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4400582
                     /organism="Cronobacter sakazakii"
                     /mol_type="genomic DNA"
                     /strain="MOD1_LR721"
                     /isolation_source="organic soy"
                     /db_xref="taxon:28141"
                     /geo_loc_name="USA"
                     /collection_date="2004"
                     /collected_by="United States Food and Drug Administration|
                     Center for Food Safety and Applied Nutrition| Office Of
                     Applied Research And Safety Assessment"
WGS         PVCY01000001-PVCY01000033
WGS_SCAFLD  NZ_PVCY01000001-NZ_PVCY01000033
//
LOCUS       NZ_NHQL01000000      4433491 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cronobacter sakazakii strain MOD1-comp11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NHQL00000000
VERSION     NZ_NHQL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04329633
            Assembly: GCF_002198775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cronobacter sakazakii
  ORGANISM  Cronobacter sakazakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Cronobacter.
REFERENCE   1  (bases 1 to 4433491)
  AUTHORS   Chase,H., Gopinath,G. and Tall,B.
  TITLE     Characterization of Cronobacter sakazakii serotype O:2, Sequence
            type 64 strains, isolated from clinical and the environment samples
            from powdered infant formula and dried milk powder manufacturing
            facilities which can utilize malonate
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4433491)
  AUTHORS   Chase,H., Gopinath,G. and Tall,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2017) US FDA, CFSAN, 8301 Muirkirk Road, Laurel,
            MD 20708, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHQL00000000.1.
            The Cronobacter sakazakii whole genome shotgun (WGS) project has
            the project accession NZ_NHQL00000000.  This version of the project
            (01) has the accession number NZ_NHQL01000000, and consists of
            sequences NHQL01000001-NHQL01000046.
            Bacteria and source DNA available from Ben D. Tall, PhD.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-DEC-2016
            Assembly Method        :: CLC NGS Cell v. 8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002198775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:51:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,260
            CDSs (total)                      :: 4,169
            Genes (coding)                    :: 4,114
            CDSs (with protein)               :: 4,114
            Genes (RNA)                       :: 91
            rRNAs                             :: 6, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 70
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 11 of 55
            Pseudo Genes (incomplete)         :: 39 of 55
            Pseudo Genes (internal stop)      :: 11 of 55
            Pseudo Genes (multiple problems)  :: 5 of 55
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4433491
                     /organism="Cronobacter sakazakii"
                     /mol_type="genomic DNA"
                     /strain="MOD1-comp11"
                     /isolation_source="environment"
                     /db_xref="taxon:28141"
                     /geo_loc_name="USA"
                     /collected_by="United States Food and Drug Administration"
WGS         NHQL01000001-NHQL01000046
WGS_SCAFLD  NZ_NHQL01000001-NZ_NHQL01000046
//
LOCUS       NZ_CAKOCJ010000000   4418014 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus avium isolate Enterococcus_avium_DSM106040, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAKOCJ000000000
VERSION     NZ_CAKOCJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13256519
            Assembly: GCF_932750885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus avium
  ORGANISM  Enterococcus avium
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 4418014)
  AUTHORS   Treichel,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2022) RWTH Aachen University Hospital, Functional
            Microbiome Research Group, Pauwelsstrasse 30, 52074 Aachen, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKOCJ000000000.1.
            The Enterococcus avium whole genome shotgun (WGS) project has the
            project accession NZ_CAKOCJ000000000.  This version of the project
            (01) has the accession number NZ_CAKOCJ010000000, and consists of
            sequences CAKOCJ010000001-CAKOCJ010000158.
            Genome of pure isolate Enterococcus_avium_DSM106040 cultured from
            mouse cecal content.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_932750885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:11:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,443
            CDSs (total)                      :: 4,397
            Genes (coding)                    :: 4,322
            CDSs (with protein)               :: 4,322
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 23 of 75
            Pseudo Genes (incomplete)         :: 50 of 75
            Pseudo Genes (internal stop)      :: 14 of 75
            Pseudo Genes (multiple problems)  :: 10 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4418014
                     /organism="Enterococcus avium"
                     /mol_type="genomic DNA"
                     /isolate="Enterococcus_avium_DSM106040"
                     /isolation_source="gut content"
                     /db_xref="taxon:33945"
WGS         CAKOCJ010000001-CAKOCJ010000158
WGS_SCAFLD  NZ_CAKOCJ010000001-NZ_CAKOCJ010000158
//
LOCUS       NZ_PVDD01000000      4556496 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cronobacter sakazakii strain MOD1_LR755, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVDD00000000
VERSION     NZ_PVDD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08611391
            Assembly: GCF_002975055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cronobacter sakazakii
  ORGANISM  Cronobacter sakazakii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Cronobacter.
REFERENCE   1  (bases 1 to 4556496)
  AUTHORS   Gopinath,G.R. and Tall,B.D.
  TITLE     29 strains of Cronobacter isolates from low moisture products
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4556496)
  AUTHORS   Gopinath,G.R. and Tall,B.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2018) US FDA, CFSAN, 8301 Muirkirk Road, Laurel,
            MD 20708, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVDD00000000.1.
            The Cronobacter sakazakii whole genome shotgun (WGS) project has
            the project accession NZ_PVDD00000000.  This version of the project
            (01) has the accession number NZ_PVDD01000000, and consists of
            sequences PVDD01000001-PVDD01000033.
            Bacteria available from ben.tall@fda.hhs.gov.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002975055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:21:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,364
            CDSs (total)                      :: 4,278
            Genes (coding)                    :: 4,220
            CDSs (with protein)               :: 4,220
            Genes (RNA)                       :: 86
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 72
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 21 of 58
            Pseudo Genes (incomplete)         :: 36 of 58
            Pseudo Genes (internal stop)      :: 7 of 58
            Pseudo Genes (multiple problems)  :: 6 of 58
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4556496
                     /organism="Cronobacter sakazakii"
                     /mol_type="genomic DNA"
                     /strain="MOD1_LR755"
                     /isolation_source="organic soy"
                     /db_xref="taxon:28141"
                     /geo_loc_name="USA"
                     /collection_date="2004"
                     /collected_by="United States Food and Drug Administration|
                     Center for Food Safety and Applied Nutrition| Office Of
                     Applied Research And Safety Assessment"
WGS         PVDD01000001-PVDD01000033
WGS_SCAFLD  NZ_PVDD01000001-NZ_PVDD01000033
//
LOCUS       NZ_JAKMLF010000000   4810396 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain 16419, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMLF000000000
VERSION     NZ_JAKMLF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419491
            Assembly: GCF_023153365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4810396)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4810396)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMLF000000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_JAKMLF000000000.  This version of the
            project (01) has the accession number NZ_JAKMLF010000000, and
            consists of sequences JAKMLF010000001-JAKMLF010000064.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023153365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:29:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,639
            CDSs (total)                      :: 4,545
            Genes (coding)                    :: 4,467
            CDSs (with protein)               :: 4,467
            Genes (RNA)                       :: 94
            rRNAs                             :: 7, 1, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 7, 5 (5S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 28 of 78
            Pseudo Genes (incomplete)         :: 45 of 78
            Pseudo Genes (internal stop)      :: 18 of 78
            Pseudo Genes (multiple problems)  :: 13 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4810396
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="16419"
                     /isolation_source="bile"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2016"
                     /collected_by="Yushan Cui"
WGS         JAKMLF010000001-JAKMLF010000064
WGS_SCAFLD  NZ_JAKMLF010000001-NZ_JAKMLF010000064
//
LOCUS       NZ_JAKMLE010000000   4810993 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain 1656, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMLE000000000
VERSION     NZ_JAKMLE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419490
            Assembly: GCF_023153415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4810993)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4810993)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMLE000000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_JAKMLE000000000.  This version of the
            project (01) has the accession number NZ_JAKMLE010000000, and
            consists of sequences JAKMLE010000001-JAKMLE010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023153415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:34:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,647
            CDSs (total)                      :: 4,545
            Genes (coding)                    :: 4,468
            CDSs (with protein)               :: 4,468
            Genes (RNA)                       :: 102
            rRNAs                             :: 9, 6, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 9, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 28 of 77
            Pseudo Genes (incomplete)         :: 44 of 77
            Pseudo Genes (internal stop)      :: 18 of 77
            Pseudo Genes (multiple problems)  :: 13 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4810993
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="1656"
                     /isolation_source="drainage fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2016"
                     /collected_by="Yushan Cui"
WGS         JAKMLE010000001-JAKMLE010000056
WGS_SCAFLD  NZ_JAKMLE010000001-NZ_JAKMLE010000056
//
LOCUS       NZ_RXSV01000000      4704549 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain WCHEB090210, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RXSV00000000
VERSION     NZ_RXSV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10525016
            Assembly: GCF_003964825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4704549)
  AUTHORS   Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z.
  TITLE     The Batch Genome Submission of Enterobacter spp. strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4704549)
  AUTHORS   Wei,L., Wu,W., Lin,J., Zhang,X., Feng,Y. and Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2018) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RXSV00000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_RXSV00000000.  This version of the project
            (01) has the accession number NZ_RXSV01000000, and consists of
            sequences RXSV01000001-RXSV01000046.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003964825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:38:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,566
            CDSs (total)                      :: 4,487
            Genes (coding)                    :: 4,431
            CDSs (with protein)               :: 4,431
            Genes (RNA)                       :: 79
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 20 of 56
            Pseudo Genes (incomplete)         :: 37 of 56
            Pseudo Genes (internal stop)      :: 11 of 56
            Pseudo Genes (multiple problems)  :: 11 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4704549
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="WCHEB090210"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="China: Chengdu, Sichuan"
                     /collection_date="2016-07"
WGS         RXSV01000001-RXSV01000046
WGS_SCAFLD  NZ_RXSV01000001-NZ_RXSV01000046
//
LOCUS       NZ_JUOY01000000      4850541 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter asburiae strain 895_ECLO, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUOY00000000
VERSION     NZ_JUOY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03198102
            Assembly: GCF_001059535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter asburiae
  ORGANISM  Enterobacter asburiae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4850541)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4850541)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUOY00000000.1.
            The Enterobacter asburiae whole genome shotgun (WGS) project has
            the project accession NZ_JUOY00000000.  This version of the project
            (01) has the accession number NZ_JUOY01000000, and consists of
            sequences JUOY01000001-JUOY01000193.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter asburiae' in July 2016.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_001059535.1
            Current Name        :: Enterobacter asburiae
            Previous Name       :: Enterobacter cloacae
            Date Updated        :: 2016-07-12
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_001521715.1
            A1 Name             :: Enterobacter asburiae
            A1 ANI              :: 97.02705%
            A1 Query Coverage   :: 82%
            A1 Subject Coverage :: 83%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000235765.3
            A2 Name             :: Enterobacter cloacae
            A2 ANI              :: 88.92944%
            A2 Query Coverage   :: 82%
            A2 Subject Coverage :: 80%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 54x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001059535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:35:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,726
            CDSs (total)                      :: 4,689
            Genes (coding)                    :: 4,606
            CDSs (with protein)               :: 4,606
            Genes (RNA)                       :: 37
            rRNAs                             :: 2, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 26
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 20 of 83
            Pseudo Genes (incomplete)         :: 62 of 83
            Pseudo Genes (internal stop)      :: 12 of 83
            Pseudo Genes (multiple problems)  :: 8 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4850541
                     /organism="Enterobacter asburiae"
                     /mol_type="genomic DNA"
                     /strain="895_ECLO"
                     /host="Homo sapiens"
                     /db_xref="taxon:61645"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUOY01000001-JUOY01000193
WGS_SCAFLD  NZ_JUOY01000001-NZ_JUOY01000193
//
LOCUS       NZ_WWTC01000000      2198796 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Collinsella aerofaciens strain BIOML-A9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WWTC00000000
VERSION     NZ_WWTC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945319
            Assembly: GCF_009876185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Collinsella aerofaciens
  ORGANISM  Collinsella aerofaciens
            Bacteria; Bacillati; Actinomycetota; Coriobacteriia;
            Coriobacteriales; Coriobacteriaceae; Collinsella.
REFERENCE   1  (bases 1 to 2198796)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2198796)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WWTC00000000.1.
            The Collinsella aerofaciens whole genome shotgun (WGS) project has
            the project accession NZ_WWTC00000000.  This version of the project
            (01) has the accession number NZ_WWTC01000000, and consists of
            sequences WWTC01000001-WWTC01000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 172.879x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009876185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:47:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,933
            CDSs (total)                      :: 1,873
            Genes (coding)                    :: 1,863
            CDSs (with protein)               :: 1,863
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 0 of 10
            Pseudo Genes (incomplete)         :: 10 of 10
            Pseudo Genes (internal stop)      :: 0 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2198796
                     /organism="Collinsella aerofaciens"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A9"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:74426"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2014-07-04"
WGS         WWTC01000001-WWTC01000068
WGS_SCAFLD  NZ_WWTC01000001-NZ_WWTC01000068
//
LOCUS       NZ_JARLLI010000000   4747245 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter ludwigii strain C1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JARLLI000000000
VERSION     NZ_JARLLI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33820437
            Assembly: GCF_029510175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter ludwigii
  ORGANISM  Enterobacter ludwigii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4747245)
  AUTHORS   Huang,E. and Moon,S.H.
  TITLE     NmcA carbapenemase-producing Enterobacter ludwigii C1 from carrots
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4747245)
  AUTHORS   Huang,E. and Moon,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2023) Environmental Health Sciences, University
            of Arkansas for Medical Sciences, 4301 W. Markham Street, Slot
            820-11, Little Rock, AR 72205, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARLLI000000000.1.
            The Enterobacter ludwigii whole genome shotgun (WGS) project has
            the project accession NZ_JARLLI000000000.  This version of the
            project (01) has the accession number NZ_JARLLI010000000, and
            consists of sequences JARLLI010000001-JARLLI010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 146x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029510175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:04:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,559
            CDSs (total)                      :: 4,476
            Genes (coding)                    :: 4,424
            CDSs (with protein)               :: 4,424
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 22 of 52
            Pseudo Genes (incomplete)         :: 38 of 52
            Pseudo Genes (internal stop)      :: 7 of 52
            Pseudo Genes (multiple problems)  :: 11 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747245
                     /organism="Enterobacter ludwigii"
                     /mol_type="genomic DNA"
                     /strain="C1"
                     /isolation_source="vegetable"
                     /db_xref="taxon:299767"
                     /geo_loc_name="USA: Arkansas"
                     /lat_lon="34.7445 N 92.2880 W"
                     /collection_date="2022"
WGS         JARLLI010000001-JARLLI010000016
WGS_SCAFLD  NZ_JARLLI010000001-NZ_JARLLI010000016
//
LOCUS       NZ_JBMPAS010000000   4934379 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain 21417_B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPAS000000000
VERSION     NZ_JBMPAS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47597743
            Assembly: GCF_049322195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4934379)
  AUTHORS   Sedlakova,M.H., Fiserova,K. and Mlynarcik,P.
  TITLE     Resistance to colistin in a tertiary hospital, Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4934379)
  AUTHORS   Mlynarcik,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Department of Microbiology, Palacky
            University Olomouc, Hnevotinska 3, Olomouc 775 15, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPAS000000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_JBMPAS000000000.  This version of the
            project (01) has the accession number NZ_JBMPAS010000000, and
            consists of sequences JBMPAS010000001-JBMPAS010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049322195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:26:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,765
            CDSs (total)                      :: 4,683
            Genes (coding)                    :: 4,605
            CDSs (with protein)               :: 4,605
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 25 of 78
            Pseudo Genes (incomplete)         :: 57 of 78
            Pseudo Genes (internal stop)      :: 8 of 78
            Pseudo Genes (multiple problems)  :: 11 of 78
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934379
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="21417_B"
                     /isolation_source="Clinical sample from a hospital
                     setting"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="Czech Republic: Olomouc (Institute of
                     Microbiology, Faculty of Medicine, UPOL)"
                     /collection_date="2018-01-01/2024-12-31"
WGS         JBMPAS010000001-JBMPAS010000056
WGS_SCAFLD  NZ_JBMPAS010000001-NZ_JBMPAS010000056
//
LOCUS       NZ_JBAJUP010000000   4940553 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter roggenkampii strain MIC00066306, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBAJUP000000000
VERSION     NZ_JBAJUP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39983250
            Assembly: GCF_048966375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4940553)
  AUTHORS   Boceska,B.K.
  TITLE     Identification of potential novel combination antibiotic regimens
            based on drug-susceptibility and genetic diversity of Gram-negative
            bacteria causing neonatal sepsis in low- and middle-income
            countries
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4940553)
  AUTHORS   Lin,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2024) Laboratory of Medical Microbiology,
            University of Antwerp, Universiteitsplein, 1, Wilrijk 2610, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAJUP000000000.1.
            The Enterobacter roggenkampii whole genome shotgun (WGS) project
            has the project accession NZ_JBAJUP000000000.  This version of the
            project (01) has the accession number NZ_JBAJUP010000000, and
            consists of sequences JBAJUP010000001-JBAJUP010000058.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v.3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048966375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:19:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,870
            CDSs (total)                      :: 4,792
            Genes (coding)                    :: 4,714
            CDSs (with protein)               :: 4,714
            Genes (RNA)                       :: 78
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 32 of 78
            Pseudo Genes (incomplete)         :: 50 of 78
            Pseudo Genes (internal stop)      :: 11 of 78
            Pseudo Genes (multiple problems)  :: 12 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4940553
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="MIC00066306"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="Thailand: Chon Buri"
                     /lat_lon="13.361143 N 100.984672 E"
                     /collection_date="2019-10-16"
                     /collected_by="NeoOBS Study"
WGS         JBAJUP010000001-JBAJUP010000058
WGS_SCAFLD  NZ_JBAJUP010000001-NZ_JBAJUP010000058
//
LOCUS       NZ_JANDKK010000000   2522906 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Cutibacterium acnes strain PD164774A, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANDKK000000000
VERSION     NZ_JANDKK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29205305
            Assembly: GCF_024328315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Cutibacterium acnes (Propionibacterium acnes)
  ORGANISM  Cutibacterium acnes
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Propionibacteriaceae; Cutibacterium.
REFERENCE   1  (bases 1 to 2522906)
  AUTHORS   Littorin,C., Poehlein,A., Soderquist,B. and Bruggemann,H.
  TITLE     Cutibacterium acnes isolates from prosthetic joint infections
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2522906)
  AUTHORS   Littorin,C., Poehlein,A., Soderquist,B. and Bruggemann,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2022) Department of Biomedicine, Aarhus
            University, Hoegh-Guldbergs Gade 10, Aarhus C 8000, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANDKK000000000.1.
            The Cutibacterium acnes whole genome shotgun (WGS) project has the
            project accession NZ_JANDKK000000000.  This version of the project
            (01) has the accession number NZ_JANDKK010000000, and consists of
            sequences JANDKK010000001-JANDKK010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2021
            Assembly Method        :: SPAdes v. v3.15.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 124x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024328315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:20:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,498
            CDSs (total)                      :: 2,446
            Genes (coding)                    :: 2,376
            CDSs (with protein)               :: 2,376
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 27 of 70
            Pseudo Genes (incomplete)         :: 34 of 70
            Pseudo Genes (internal stop)      :: 14 of 70
            Pseudo Genes (multiple problems)  :: 5 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2522906
                     /organism="Cutibacterium acnes"
                     /mol_type="genomic DNA"
                     /strain="PD164774A"
                     /isolation_source="periprosthetic tissue"
                     /host="Homo sapiens"
                     /db_xref="taxon:1747"
                     /geo_loc_name="Sweden: Orebro"
                     /lat_lon="59.27 N 15.21 E"
                     /collection_date="2019"
                     /collected_by="Bo Soderquist"
WGS         JANDKK010000001-JANDKK010000018
WGS_SCAFLD  NZ_JANDKK010000001-NZ_JANDKK010000018
//
LOCUS       NZ_JBMOZA010000000   4721837 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter ludwigii strain 15183_A, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMOZA000000000
VERSION     NZ_JBMOZA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47597786
            Assembly: GCF_049321595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter ludwigii
  ORGANISM  Enterobacter ludwigii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4721837)
  AUTHORS   Sedlakova,M.H., Fiserova,K. and Mlynarcik,P.
  TITLE     Resistance to colistin in a tertiary hospital, Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4721837)
  AUTHORS   Mlynarcik,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Department of Microbiology, Palacky
            University Olomouc, Hnevotinska 3, Olomouc 775 15, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMOZA000000000.1.
            The Enterobacter ludwigii whole genome shotgun (WGS) project has
            the project accession NZ_JBMOZA000000000.  This version of the
            project (01) has the accession number NZ_JBMOZA010000000, and
            consists of sequences JBMOZA010000001-JBMOZA010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049321595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:29:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,534
            CDSs (total)                      :: 4,452
            Genes (coding)                    :: 4,398
            CDSs (with protein)               :: 4,398
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 69
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 22 of 54
            Pseudo Genes (incomplete)         :: 38 of 54
            Pseudo Genes (internal stop)      :: 16 of 54
            Pseudo Genes (multiple problems)  :: 18 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4721837
                     /organism="Enterobacter ludwigii"
                     /mol_type="genomic DNA"
                     /strain="15183_A"
                     /isolation_source="Clinical sample from a hospital
                     setting"
                     /host="Homo sapiens"
                     /db_xref="taxon:299767"
                     /geo_loc_name="Czech Republic: Olomouc (Institute of
                     Microbiology, Faculty of Medicine, UPOL)"
                     /collection_date="2018-01-01/2024-12-31"
WGS         JBMOZA010000001-JBMOZA010000027
WGS_SCAFLD  NZ_JBMOZA010000001-NZ_JBMOZA010000027
//
LOCUS       NZ_JAKMNL010000000   4762275 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain AR1358, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMNL000000000
VERSION     NZ_JAKMNL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419549
            Assembly: GCF_023152215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4762275)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4762275)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMNL000000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_JAKMNL000000000.  This version of the
            project (01) has the accession number NZ_JAKMNL010000000, and
            consists of sequences JAKMNL010000001-JAKMNL010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023152215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:26:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,636
            CDSs (total)                      :: 4,535
            Genes (coding)                    :: 4,484
            CDSs (with protein)               :: 4,484
            Genes (RNA)                       :: 101
            rRNAs                             :: 7, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 1 (5S, 16S)
            tRNAs                             :: 84
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 15 of 51
            Pseudo Genes (incomplete)         :: 37 of 51
            Pseudo Genes (internal stop)      :: 6 of 51
            Pseudo Genes (multiple problems)  :: 6 of 51
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4762275
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="AR1358"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2018"
                     /collected_by="Yushan Cui"
WGS         JAKMNL010000001-JAKMNL010000038
WGS_SCAFLD  NZ_JAKMNL010000001-NZ_JAKMNL010000038
//
LOCUS       NZ_JBMPHV010000000   4762669 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter ludwigii strain P6N005, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPHV000000000
VERSION     NZ_JBMPHV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43454192
            Assembly: GCF_049316605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter ludwigii
  ORGANISM  Enterobacter ludwigii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4762669)
  AUTHORS   Vanderyacht,T., Salinas,L., Mitchell,T., Walas,N., Ho,T., Trueba,G.
            and Graham,J.
  TITLE     Assessing the Role of Domestic Wastewater Treatment in the Spread
            of ESBL-Producing Escherichia Coli through Irrigation Waters
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4762669)
  AUTHORS   Ho,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2024) Environmental Health Science, University of
            California Berkeley, 2121 Berkeley Way West, Berkeley, CA
            94720-7360, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPHV000000000.1.
            The Enterobacter ludwigii whole genome shotgun (WGS) project has
            the project accession NZ_JBMPHV000000000.  This version of the
            project (01) has the accession number NZ_JBMPHV010000000, and
            consists of sequences JBMPHV010000001-JBMPHV010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2023
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049316605.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:36:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,596
            CDSs (total)                      :: 4,513
            Genes (coding)                    :: 4,456
            CDSs (with protein)               :: 4,456
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 24 of 57
            Pseudo Genes (incomplete)         :: 40 of 57
            Pseudo Genes (internal stop)      :: 16 of 57
            Pseudo Genes (multiple problems)  :: 18 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4762669
                     /organism="Enterobacter ludwigii"
                     /mol_type="genomic DNA"
                     /strain="P6N005"
                     /isolation_source="Lettuce from pintag market"
                     /db_xref="taxon:299767"
                     /geo_loc_name="Ecuador: Pichincha"
                     /collection_date="2023-06/2023-07"
                     /collected_by="University of California, Berkeley"
WGS         JBMPHV010000001-JBMPHV010000020
WGS_SCAFLD  NZ_JBMPHV010000001-NZ_JBMPHV010000020
//
LOCUS       NZ_JAKMNN010000000   4776759 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain AR1446, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMNN000000000
VERSION     NZ_JAKMNN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419551
            Assembly: GCF_023152155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4776759)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4776759)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMNN000000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_JAKMNN000000000.  This version of the
            project (01) has the accession number NZ_JAKMNN010000000, and
            consists of sequences JAKMNN010000001-JAKMNN010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023152155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:31:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,628
            CDSs (total)                      :: 4,525
            Genes (coding)                    :: 4,470
            CDSs (with protein)               :: 4,470
            Genes (RNA)                       :: 103
            rRNAs                             :: 8, 6, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 18 of 55
            Pseudo Genes (incomplete)         :: 41 of 55
            Pseudo Genes (internal stop)      :: 9 of 55
            Pseudo Genes (multiple problems)  :: 12 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4776759
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="AR1446"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2018"
                     /collected_by="Yushan Cui"
WGS         JAKMNN010000001-JAKMNN010000040
WGS_SCAFLD  NZ_JAKMNN010000001-NZ_JAKMNN010000040
//
LOCUS       NZ_JAKMJV010000000   4682221 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter asburiae strain 14524, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKMJV000000000
VERSION     NZ_JAKMJV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419455
            Assembly: GCF_023154115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter asburiae
  ORGANISM  Enterobacter asburiae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4682221)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4682221)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMJV000000000.1.
            The Enterobacter asburiae whole genome shotgun (WGS) project has
            the project accession NZ_JAKMJV000000000.  This version of the
            project (01) has the accession number NZ_JAKMJV010000000, and
            consists of sequences JAKMJV010000001-JAKMJV010000084.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023154115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:27:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,539
            CDSs (total)                      :: 4,440
            Genes (coding)                    :: 4,363
            CDSs (with protein)               :: 4,363
            Genes (RNA)                       :: 99
            rRNAs                             :: 9, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 9, 2, 4 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 29 of 77
            Pseudo Genes (incomplete)         :: 47 of 77
            Pseudo Genes (internal stop)      :: 14 of 77
            Pseudo Genes (multiple problems)  :: 12 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4682221
                     /organism="Enterobacter asburiae"
                     /mol_type="genomic DNA"
                     /strain="14524"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:61645"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2014"
                     /collected_by="Yushan Cui"
WGS         JAKMJV010000001-JAKMJV010000084
WGS_SCAFLD  NZ_JAKMJV010000001-NZ_JAKMJV010000084
//
LOCUS       NZ_JAKMNX010000000   4740452 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain AR2339, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMNX000000000
VERSION     NZ_JAKMNX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419561
            Assembly: GCF_023151985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4740452)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4740452)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMNX000000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_JAKMNX000000000.  This version of the
            project (01) has the accession number NZ_JAKMNX010000000, and
            consists of sequences JAKMNX010000001-JAKMNX010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023151985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:27:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,610
            CDSs (total)                      :: 4,503
            Genes (coding)                    :: 4,449
            CDSs (with protein)               :: 4,449
            Genes (RNA)                       :: 107
            rRNAs                             :: 9, 5, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 9, 4, 8 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 17 of 54
            Pseudo Genes (incomplete)         :: 36 of 54
            Pseudo Genes (internal stop)      :: 9 of 54
            Pseudo Genes (multiple problems)  :: 7 of 54
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4740452
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="AR2339"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2019"
                     /collected_by="Yushan Cui"
WGS         JAKMNX010000001-JAKMNX010000038
WGS_SCAFLD  NZ_JAKMNX010000001-NZ_JAKMNX010000038
//
LOCUS       NZ_JAKMJP010000000   4911410 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter cloacae strain 14338, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKMJP000000000
VERSION     NZ_JAKMJP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419449
            Assembly: GCF_023154245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter cloacae
  ORGANISM  Enterobacter cloacae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4911410)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4911410)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMJP000000000.1.
            The Enterobacter cloacae whole genome shotgun (WGS) project has the
            project accession NZ_JAKMJP000000000.  This version of the project
            (01) has the accession number NZ_JAKMJP010000000, and consists of
            sequences JAKMJP010000001-JAKMJP010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023154245.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:27:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,692
            CDSs (total)                      :: 4,594
            Genes (coding)                    :: 4,541
            CDSs (with protein)               :: 4,541
            Genes (RNA)                       :: 98
            rRNAs                             :: 8, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 7, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 19 of 53
            Pseudo Genes (incomplete)         :: 33 of 53
            Pseudo Genes (internal stop)      :: 10 of 53
            Pseudo Genes (multiple problems)  :: 8 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4911410
                     /organism="Enterobacter cloacae"
                     /mol_type="genomic DNA"
                     /strain="14338"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:550"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2014"
                     /collected_by="Yushan Cui"
WGS         JAKMJP010000001-JAKMJP010000042
WGS_SCAFLD  NZ_JAKMJP010000001-NZ_JAKMJP010000042
//
LOCUS       NZ_JAKMMF010000000   4800079 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain 34747, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMMF000000000
VERSION     NZ_JAKMMF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419517
            Assembly: GCF_023152915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4800079)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4800079)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMMF000000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_JAKMMF000000000.  This version of the
            project (01) has the accession number NZ_JAKMMF010000000, and
            consists of sequences JAKMMF010000001-JAKMMF010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023152915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:32:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,644
            CDSs (total)                      :: 4,548
            Genes (coding)                    :: 4,497
            CDSs (with protein)               :: 4,497
            Genes (RNA)                       :: 96
            rRNAs                             :: 9, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8, 2 (5S, 16S)
            tRNAs                             :: 76
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 26 of 51
            Pseudo Genes (incomplete)         :: 32 of 51
            Pseudo Genes (internal stop)      :: 12 of 51
            Pseudo Genes (multiple problems)  :: 17 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4800079
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="34747"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2017"
                     /collected_by="Yushan Cui"
WGS         JAKMMF010000001-JAKMMF010000044
WGS_SCAFLD  NZ_JAKMMF010000001-NZ_JAKMMF010000044
//
LOCUS       NZ_JAKMOF010000000   4885009 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter cloacae strain AR2777, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKMOF000000000
VERSION     NZ_JAKMOF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419569
            Assembly: GCF_023151865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter cloacae
  ORGANISM  Enterobacter cloacae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4885009)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4885009)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMOF000000000.1.
            The Enterobacter cloacae whole genome shotgun (WGS) project has the
            project accession NZ_JAKMOF000000000.  This version of the project
            (01) has the accession number NZ_JAKMOF010000000, and consists of
            sequences JAKMOF010000001-JAKMOF010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023151865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:32:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,700
            CDSs (total)                      :: 4,596
            Genes (coding)                    :: 4,543
            CDSs (with protein)               :: 4,543
            Genes (RNA)                       :: 104
            rRNAs                             :: 8, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 19 of 53
            Pseudo Genes (incomplete)         :: 38 of 53
            Pseudo Genes (internal stop)      :: 7 of 53
            Pseudo Genes (multiple problems)  :: 10 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4885009
                     /organism="Enterobacter cloacae"
                     /mol_type="genomic DNA"
                     /strain="AR2777"
                     /isolation_source="secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:550"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2019"
                     /collected_by="Yushan Cui"
WGS         JAKMOF010000001-JAKMOF010000052
WGS_SCAFLD  NZ_JAKMOF010000001-NZ_JAKMOF010000052
//
LOCUS       NZ_JAKMIC010000000   4745172 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain 11465, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMIC000000000
VERSION     NZ_JAKMIC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419410
            Assembly: GCF_023155015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4745172)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4745172)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMIC000000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_JAKMIC000000000.  This version of the
            project (01) has the accession number NZ_JAKMIC010000000, and
            consists of sequences JAKMIC010000001-JAKMIC010000041.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023155015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:31:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,586
            CDSs (total)                      :: 4,482
            Genes (coding)                    :: 4,427
            CDSs (with protein)               :: 4,427
            Genes (RNA)                       :: 104
            rRNAs                             :: 9, 8, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 9, 8 (5S, 16S)
            tRNAs                             :: 77
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 20 of 55
            Pseudo Genes (incomplete)         :: 36 of 55
            Pseudo Genes (internal stop)      :: 9 of 55
            Pseudo Genes (multiple problems)  :: 9 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4745172
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="11465"
                     /isolation_source="throat swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2011"
                     /collected_by="Yushan Cui"
WGS         JAKMIC010000001-JAKMIC010000041
WGS_SCAFLD  NZ_JAKMIC010000001-NZ_JAKMIC010000041
//
LOCUS       NZ_JAKMKA010000000   4706479 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain 14701, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKMKA000000000
VERSION     NZ_JAKMKA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25419460
            Assembly: GCF_023153995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4706479)
  AUTHORS   Liao,W., Cui,Y., Quan,J., Zhao,D., Han,X., Shi,Q., Wang,Q.,
            Jiang,Y., Du,X., Li,X. and Yu,Y.
  TITLE     High prevalence of colistin resistance and mcr-9/10 genes in
            Enterobacter spp. in a tertiary hospital over a decade
  JOURNAL   Int J Antimicrob Agents 59 (5), 106573 (2022)
   PUBMED   35307563
REFERENCE   2  (bases 1 to 4706479)
  AUTHORS   Liao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2022) Infectious Diseases, Sir Run Run Shaw
            Hospital, 3# East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKMKA000000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_JAKMKA000000000.  This version of the
            project (01) has the accession number NZ_JAKMKA010000000, and
            consists of sequences JAKMKA010000001-JAKMKA010000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Shovill v. 0.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023153995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:35:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,537
            CDSs (total)                      :: 4,443
            Genes (coding)                    :: 4,391
            CDSs (with protein)               :: 4,391
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 5, 3 (5S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 22 of 52
            Pseudo Genes (incomplete)         :: 37 of 52
            Pseudo Genes (internal stop)      :: 10 of 52
            Pseudo Genes (multiple problems)  :: 15 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4706479
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="14701"
                     /isolation_source="secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="China"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2014"
                     /collected_by="Yushan Cui"
WGS         JAKMKA010000001-JAKMKA010000043
WGS_SCAFLD  NZ_JAKMKA010000001-NZ_JAKMKA010000043
//
LOCUS       NZ_JAHTWF010000000   4851593 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter cloacae strain Q3814, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHTWF000000000
VERSION     NZ_JAHTWF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN19728245
            Assembly: GCF_025536465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter cloacae
  ORGANISM  Enterobacter cloacae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4851593)
  AUTHORS   Abdallah,R., Kuete Yimagou,E., Hadjadj,L., Mediannikov,O.,
            Ibrahim,A., Davoust,B., Barciela,A., Hernandez-Aguilar,R.A.,
            Diatta,G., Sokhna,C., Raoult,D., Rolain,J.M. and Baron,S.A.
  TITLE     Population Diversity of Antibiotic Resistant Enterobacterales in
            Samples From Wildlife Origin in Senegal: Identification of a
            Multidrug Resistance Transposon Carrying blaCTX-M-15 in Escherichia
            coli
  JOURNAL   Front Microbiol 13, 838392 (2022)
   PUBMED   35369484
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4851593)
  AUTHORS   Abdallah,R., Kuete Yimagou,E., Hadjadj,L., Mediannikov,O.,
            Ibrahim,A., Davoust,B., Barciela,A., Hernandez-Aguilar,R.A.,
            Diatta,G., Sokhna,C., Raoult,D., Rolain,J.-M. and Baron,S.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2021) MEPHI, IHU Mediterranee Infection, 19-21 Bd
            Jean Moulin, Marseille 13005, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHTWF000000000.1.
            The Enterobacter cloacae whole genome shotgun (WGS) project has the
            project accession NZ_JAHTWF000000000.  This version of the project
            (01) has the accession number NZ_JAHTWF010000000, and consists of
            sequences JAHTWF010000001-JAHTWF010000092.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0+galaxy1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 40x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_025536465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:39:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,659
            CDSs (total)                      :: 4,588
            Genes (coding)                    :: 4,530
            CDSs (with protein)               :: 4,530
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 3, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 8 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 14 of 58
            Pseudo Genes (incomplete)         :: 46 of 58
            Pseudo Genes (internal stop)      :: 4 of 58
            Pseudo Genes (multiple problems)  :: 6 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4851593
                     /organism="Enterobacter cloacae"
                     /mol_type="genomic DNA"
                     /strain="Q3814"
                     /isolation_source="fecal sample"
                     /host="Pan troglodytes verus"
                     /db_xref="taxon:550"
                     /geo_loc_name="Senegal: Niokolo-Koba National Park"
                     /collection_date="2019-08"
WGS         JAHTWF010000001-JAHTWF010000092
WGS_SCAFLD  NZ_JAHTWF010000001-NZ_JAHTWF010000092
//
LOCUS       NZ_CDSJHD010000000   3297751 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Croceivirga radicis isolate MarMAG_033189, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDSJHD000000000
VERSION     NZ_CDSJHD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120656649
            Assembly: GCF_977168875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Croceivirga radicis (marine metagenome)
  ORGANISM  Croceivirga radicis
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Croceivirga.
REFERENCE   1  (bases 1 to 3297751)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDSJHD000000000.1.
            The Croceivirga radicis whole genome shotgun (WGS) project has the
            project accession NZ_CDSJHD000000000.  This version of the project
            (01) has the accession number NZ_CDSJHD010000000, and consists of
            sequences CDSJHD010000001-CDSJHD010000431.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977168875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:19:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,193
            CDSs (total)                      :: 3,165
            Genes (coding)                    :: 3,051
            CDSs (with protein)               :: 3,051
            Genes (RNA)                       :: 28
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 2 of 114
            Pseudo Genes (incomplete)         :: 109 of 114
            Pseudo Genes (internal stop)      :: 3 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3297751
                     /organism="Croceivirga radicis"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_033189"
                     /db_xref="taxon:1929488"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         CDSJHD010000001-CDSJHD010000431
WGS_SCAFLD  NZ_CDSJHD010000001-NZ_CDSJHD010000431
//
LOCUS       NZ_CBBZJT010000000   4817814 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Emticicia sp. isolate
            PELAGICS-MAG-x4-bin079239-CLAYM-SM-20sep21., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBZJT000000000
VERSION     NZ_CBBZJT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460773
            Assembly: GCF_965008195.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Emticicia sp. (freshwater metagenome)
  ORGANISM  Emticicia sp.
            Bacteria; Pseudomonadati; Bacteroidota; Cytophagia; Cytophagales;
            Leadbetterellaceae; Emticicia.
REFERENCE   1  (bases 1 to 4817814)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBZJT000000000.1.
            The Emticicia sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBZJT000000000.  This version of the project
            (01) has the accession number NZ_CBBZJT010000000, and consists of
            sequences CBBZJT010000001-CBBZJT010000205.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965008195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:41:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,089
            CDSs (total)                      :: 4,055
            Genes (coding)                    :: 4,002
            CDSs (with protein)               :: 4,002
            Genes (RNA)                       :: 34
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 4 of 53
            Pseudo Genes (incomplete)         :: 47 of 53
            Pseudo Genes (internal stop)      :: 3 of 53
            Pseudo Genes (multiple problems)  :: 1 of 53
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4817814
                     /organism="Emticicia sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-x4-bin079239-CLAYM-SM-20sep21."
                     /isolation_source="Lac de la Claye lake"
                     /db_xref="taxon:1930953"
                     /environmental_sample
                     /geo_loc_name="France"
                     /collection_date="2021-09-20"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBZJT010000001-CBBZJT010000205
WGS_SCAFLD  NZ_CBBZJT010000001-NZ_CBBZJT010000205
//
LOCUS       NZ_JBMPAO010000000   4946201 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter asburiae strain 23096_B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPAO000000000
VERSION     NZ_JBMPAO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47597747
            Assembly: GCF_049320385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter asburiae
  ORGANISM  Enterobacter asburiae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4946201)
  AUTHORS   Sedlakova,M.H., Fiserova,K. and Mlynarcik,P.
  TITLE     Resistance to colistin in a tertiary hospital, Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4946201)
  AUTHORS   Mlynarcik,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Department of Microbiology, Palacky
            University Olomouc, Hnevotinska 3, Olomouc 775 15, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPAO000000000.1.
            The Enterobacter asburiae whole genome shotgun (WGS) project has
            the project accession NZ_JBMPAO000000000.  This version of the
            project (01) has the accession number NZ_JBMPAO010000000, and
            consists of sequences JBMPAO010000001-JBMPAO010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049320385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:22:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,936
            CDSs (total)                      :: 4,848
            Genes (coding)                    :: 4,760
            CDSs (with protein)               :: 4,760
            Genes (RNA)                       :: 88
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 20 of 88
            Pseudo Genes (incomplete)         :: 63 of 88
            Pseudo Genes (internal stop)      :: 15 of 88
            Pseudo Genes (multiple problems)  :: 9 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4946201
                     /organism="Enterobacter asburiae"
                     /mol_type="genomic DNA"
                     /strain="23096_B"
                     /isolation_source="Clinical sample from a hospital
                     setting"
                     /host="Homo sapiens"
                     /db_xref="taxon:61645"
                     /geo_loc_name="Czech Republic: Olomouc (Institute of
                     Microbiology, Faculty of Medicine, UPOL)"
                     /collection_date="2018-01-01/2024-12-31"
WGS         JBMPAO010000001-JBMPAO010000073
WGS_SCAFLD  NZ_JBMPAO010000001-NZ_JBMPAO010000073
//
LOCUS       NZ_JBMPAA010000000   4656852 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter bugandensis strain 13903_A, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPAA000000000
VERSION     NZ_JBMPAA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47597760
            Assembly: GCF_049321995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter bugandensis
  ORGANISM  Enterobacter bugandensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter.
REFERENCE   1  (bases 1 to 4656852)
  AUTHORS   Sedlakova,M.H., Fiserova,K. and Mlynarcik,P.
  TITLE     Resistance to colistin in a tertiary hospital, Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4656852)
  AUTHORS   Mlynarcik,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Department of Microbiology, Palacky
            University Olomouc, Hnevotinska 3, Olomouc 775 15, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPAA000000000.1.
            The Enterobacter bugandensis whole genome shotgun (WGS) project has
            the project accession NZ_JBMPAA000000000.  This version of the
            project (01) has the accession number NZ_JBMPAA010000000, and
            consists of sequences JBMPAA010000001-JBMPAA010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049321995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:31:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,472
            CDSs (total)                      :: 4,387
            Genes (coding)                    :: 4,331
            CDSs (with protein)               :: 4,331
            Genes (RNA)                       :: 85
            rRNAs                             :: 2, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 6 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 12 of 56
            Pseudo Genes (incomplete)         :: 42 of 56
            Pseudo Genes (internal stop)      :: 7 of 56
            Pseudo Genes (multiple problems)  :: 5 of 56
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656852
                     /organism="Enterobacter bugandensis"
                     /mol_type="genomic DNA"
                     /strain="13903_A"
                     /isolation_source="Clinical sample from a hospital
                     setting"
                     /host="Homo sapiens"
                     /db_xref="taxon:881260"
                     /geo_loc_name="Czech Republic: Olomouc (Institute of
                     Microbiology, Faculty of Medicine, UPOL)"
                     /collection_date="2018-01-01/2024-12-31"
WGS         JBMPAA010000001-JBMPAA010000054
WGS_SCAFLD  NZ_JBMPAA010000001-NZ_JBMPAA010000054
//
LOCUS       NZ_JBMPAB010000000   4858435 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter asburiae strain 14047_C, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPAB000000000
VERSION     NZ_JBMPAB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47597759
            Assembly: GCF_049321975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter asburiae
  ORGANISM  Enterobacter asburiae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4858435)
  AUTHORS   Sedlakova,M.H., Fiserova,K. and Mlynarcik,P.
  TITLE     Resistance to colistin in a tertiary hospital, Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4858435)
  AUTHORS   Mlynarcik,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Department of Microbiology, Palacky
            University Olomouc, Hnevotinska 3, Olomouc 775 15, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPAB000000000.1.
            The Enterobacter asburiae whole genome shotgun (WGS) project has
            the project accession NZ_JBMPAB000000000.  This version of the
            project (01) has the accession number NZ_JBMPAB010000000, and
            consists of sequences JBMPAB010000001-JBMPAB010000093.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049321975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:31:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,789
            CDSs (total)                      :: 4,693
            Genes (coding)                    :: 4,614
            CDSs (with protein)               :: 4,614
            Genes (RNA)                       :: 96
            rRNAs                             :: 3, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 5, 3 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 32 of 79
            Pseudo Genes (incomplete)         :: 53 of 79
            Pseudo Genes (internal stop)      :: 22 of 79
            Pseudo Genes (multiple problems)  :: 24 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4858435
                     /organism="Enterobacter asburiae"
                     /mol_type="genomic DNA"
                     /strain="14047_C"
                     /isolation_source="Clinical sample from a hospital
                     setting"
                     /host="Homo sapiens"
                     /db_xref="taxon:61645"
                     /geo_loc_name="Czech Republic: Olomouc (Institute of
                     Microbiology, Faculty of Medicine, UPOL)"
                     /collection_date="2018-01-01/2024-12-31"
WGS         JBMPAB010000001-JBMPAB010000093
WGS_SCAFLD  NZ_JBMPAB010000001-NZ_JBMPAB010000093
//
LOCUS       NZ_JBMPAG010000000   4780463 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterobacter asburiae strain 9449_B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPAG000000000
VERSION     NZ_JBMPAG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47597754
            Assembly: GCF_049320345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterobacter asburiae
  ORGANISM  Enterobacter asburiae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 4780463)
  AUTHORS   Sedlakova,M.H., Fiserova,K. and Mlynarcik,P.
  TITLE     Resistance to colistin in a tertiary hospital, Czech Republic
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4780463)
  AUTHORS   Mlynarcik,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2025) Department of Microbiology, Palacky
            University Olomouc, Hnevotinska 3, Olomouc 775 15, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPAG000000000.1.
            The Enterobacter asburiae whole genome shotgun (WGS) project has
            the project accession NZ_JBMPAG000000000.  This version of the
            project (01) has the accession number NZ_JBMPAG010000000, and
            consists of sequences JBMPAG010000001-JBMPAG010000081.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049320345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:33:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,668
            CDSs (total)                      :: 4,582
            Genes (coding)                    :: 4,503
            CDSs (with protein)               :: 4,503
            Genes (RNA)                       :: 86
            rRNAs                             :: 2, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 4, 6 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 34 of 79
            Pseudo Genes (incomplete)         :: 53 of 79
            Pseudo Genes (internal stop)      :: 16 of 79
            Pseudo Genes (multiple problems)  :: 21 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4780463
                     /organism="Enterobacter asburiae"
                     /mol_type="genomic DNA"
                     /strain="9449_B"
                     /isolation_source="Clinical sample from a hospital
                     setting"
                     /host="Homo sapiens"
                     /db_xref="taxon:61645"
                     /geo_loc_name="Czech Republic: Olomouc (Institute of
                     Microbiology, Faculty of Medicine, UPOL)"
                     /collection_date="2018-01-01/2024-12-31"
WGS         JBMPAG010000001-JBMPAG010000081
WGS_SCAFLD  NZ_JBMPAG010000001-NZ_JBMPAG010000081
//
LOCUS       NZ_JBRAZP010000000   4551841 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Deinococcus soli (ex Cha et al. 2016) strain LDE1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBRAZP000000000
VERSION     NZ_JBRAZP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50480401
            Assembly: GCF_056780125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Deinococcus soli (ex Cha et al. 2016)
  ORGANISM  Deinococcus soli (ex Cha et al. 2016)
            Bacteria; Thermotogati; Deinococcota; Deinococci; Deinococcales;
            Deinococcaceae; Deinococcus.
REFERENCE   1  (bases 1 to 4551841)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Tso,F., Ford,N.E.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4551841)
  AUTHORS   Garrell,A.-K., Swift,J.F., Pal,G., Pestalozzi,C., Castrillo,G.,
            Schlaeppi,K., Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRAZP000000000.1.
            The Deinococcus soli (ex Cha et al. 2016) whole genome shotgun
            (WGS) project has the project accession NZ_JBRAZP000000000.  This
            version of the project (01) has the accession number
            NZ_JBRAZP010000000, and consists of sequences
            JBRAZP010000001-JBRAZP010000065.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 190x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780125.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:04:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,467
            CDSs (total)                      :: 4,411
            Genes (coding)                    :: 4,379
            CDSs (with protein)               :: 4,379
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 8 of 32
            Pseudo Genes (incomplete)         :: 26 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 5 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4551841
                     /organism="Deinococcus soli (ex Cha et al. 2016)"
                     /mol_type="genomic DNA"
                     /strain="LDE1"
                     /db_xref="taxon:1309411"
                     /geo_loc_name="Switzerland"
                     /lat_lon="46.399 N 6.233 E"
                     /collection_date="2014-07"
WGS         JBRAZP010000001-JBRAZP010000065
WGS_SCAFLD  NZ_JBRAZP010000001-NZ_JBRAZP010000065
//
LOCUS       NZ_JBVBKW010000000   1599703 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Gardnerella vaginalis strain C0088G9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBVBKW000000000
VERSION     NZ_JBVBKW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50491671
            Assembly: GCF_055453015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Gardnerella vaginalis
  ORGANISM  Gardnerella vaginalis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Gardnerella.
REFERENCE   1  (bases 1 to 1599703)
  AUTHORS   France,M., Rutt,L. and Ravel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Institute for Genome Sciences, University
            of Maryland Baltimore, 670 West Baltimore Street, HSF III,
            Baltimore, MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBVBKW000000000.1.
            The Gardnerella vaginalis whole genome shotgun (WGS) project has
            the project accession NZ_JBVBKW000000000.  This version of the
            project (01) has the accession number NZ_JBVBKW010000000, and
            consists of sequences JBVBKW010000001-JBVBKW010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 4.2.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_055453015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:13:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,278
            CDSs (total)                      :: 1,230
            Genes (coding)                    :: 1,208
            CDSs (with protein)               :: 1,208
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 20 of 22
            Pseudo Genes (internal stop)      :: 2 of 22
            Pseudo Genes (multiple problems)  :: 4 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599703
                     /organism="Gardnerella vaginalis"
                     /mol_type="genomic DNA"
                     /strain="C0088G9"
                     /isolation_source="ENVO:02000040"
                     /host="Homo sapiens"
                     /db_xref="taxon:2702"
                     /geo_loc_name="USA"
                     /lat_lon="39.29 N 76.61 W"
                     /collection_date="2018"
WGS         JBVBKW010000001-JBVBKW010000018
WGS_SCAFLD  NZ_JBVBKW010000001-NZ_JBVBKW010000018
//
LOCUS       NZ_CAOX01000000      3792204 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora Ea356 strain Ea 356, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAOX00000000
VERSION     NZ_CAOX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2272233
            Assembly: GCF_000367545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora Ea356
  ORGANISM  Erwinia amylovora Ea356
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1
  AUTHORS   Mann,R.A., Smits,T.H.M., Buehlmann,A., Blom,J., Goesmann,A.,
            Frey,J.E., Plummer,K.M., Beer,S.V., Luck,J., Duffy,B. and Rodoni,B.
  TITLE     Comparative genomics of 12 strains of Erwinia amylovora identifies
            a pan-genome with a large conserved core and provides insights into
            host specificity
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3792204)
  AUTHORS   Linke,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-NOV-2012) Bielefeld University, Center For
            Biotechnology, Universitaetsstrasse 25, D-33501 Bielefeld, GERMANY
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAOX00000000.1.
            
            On Mar 4, 2015 this sequence version replaced gi:490264701.
            The Erwinia amylovora Ea356 whole genome shotgun (WGS) project has
            the project accession NZ_CAOX00000000.  This version of the project
            (01) has the accession number NZ_CAOX01000000, and consists of
            sequences CAOX01000001-CAOX01000014.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000367545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:41:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,477
            CDSs (total)                      :: 3,393
            Genes (coding)                    :: 3,294
            CDSs (with protein)               :: 3,294
            Genes (RNA)                       :: 84
            tRNAs                             :: 64
            ncRNAs                            :: 20
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 61 of 99
            Pseudo Genes (incomplete)         :: 50 of 99
            Pseudo Genes (internal stop)      :: 27 of 99
            Pseudo Genes (multiple problems)  :: 31 of 99
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3792204
                     /organism="Erwinia amylovora Ea356"
                     /mol_type="genomic DNA"
                     /strain="Ea 356"
                     /db_xref="taxon:1255303"
WGS         CAOX01000001-CAOX01000014
WGS_SCAFLD  HF560643
WGS_SCAFLD  NC_020919
WGS_SCAFLD  NZ_CAOX01000001-NZ_CAOX01000014
//
LOCUS       NZ_JNBP01000000      4493998 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Escherichia marmotae strain HT073016, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JNBP00000000
VERSION     NZ_JNBP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02777259
            Assembly: GCF_000807695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Escherichia marmotae
  ORGANISM  Escherichia marmotae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4493998)
  AUTHORS   Liu,S., Jin,D., Lan,R., Wang,Y., Meng,Q., Dai,H., Lu,S., Hu,S. and
            Xu,J.
  TITLE     Escherichia marmotae sp. nov., isolated from faeces of Marmota
            himalayana
  JOURNAL   Int J Syst Evol Microbiol 65 (7), 2130-2134 (2015)
   PUBMED   25851592
REFERENCE   2  (bases 1 to 4493998)
  AUTHORS   Sha,L. and Dong,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2014) Branch of New Pathogens, National Institute
            for Communicable Disease Control and Prevention, 155 Changbai Road,
            Changping District, Beijing 102206, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JNBP00000000.1.
            
            On Jan 23, 2015 this sequence version replaced gi:740535572.
            The Escherichia marmotae whole genome shotgun (WGS) project has the
            project accession NZ_JNBP00000000.  This version of the project
            (01) has the accession number NZ_JNBP01000000, and consists of
            sequences JNBP01000163-JNBP01000229.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: JUL-2013
            Assembly Method       :: SOAPdenovo v. 2.04
            Genome Coverage       :: 100.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000807695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:16:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,401
            CDSs (total)                      :: 4,354
            Genes (coding)                    :: 4,066
            CDSs (with protein)               :: 4,066
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 288
            CDSs (without protein)            :: 288
            Pseudo Genes (ambiguous residues) :: 0 of 288
            Pseudo Genes (frameshifted)       :: 127 of 288
            Pseudo Genes (incomplete)         :: 155 of 288
            Pseudo Genes (internal stop)      :: 54 of 288
            Pseudo Genes (multiple problems)  :: 45 of 288
            Pseudo Genes (short protein)      :: 1 of 288
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4493998
                     /organism="Escherichia marmotae"
                     /mol_type="genomic DNA"
                     /strain="HT073016"
                     /isolation_source="feces"
                     /host="Marmota himalayana"
                     /type_material="type strain of Escherichia marmotae"
                     /db_xref="taxon:1499973"
                     /geo_loc_name="China: Yushu Tibetan Autonomous Prefecture"
                     /collection_date="2012-07-30"
WGS         JNBP01000001-JNBP01000064
WGS         JNBP01000068-JNBP01000111
WGS         JNBP01000114-JNBP01000140
WGS         JNBP01000146-JNBP01000161
WGS         JNBP01000163-JNBP01000229
WGS_SCAFLD  NZ_JNBP01000009
WGS_SCAFLD  NZ_JNBP01000036
WGS_SCAFLD  NZ_JNBP01000039
WGS_SCAFLD  NZ_JNBP01000042-NZ_JNBP01000043
WGS_SCAFLD  NZ_JNBP01000052-NZ_JNBP01000053
WGS_SCAFLD  NZ_JNBP01000068-NZ_JNBP01000070
WGS_SCAFLD  NZ_JNBP01000074
WGS_SCAFLD  NZ_JNBP01000086
WGS_SCAFLD  NZ_JNBP01000100
WGS_SCAFLD  NZ_JNBP01000103-NZ_JNBP01000104
WGS_SCAFLD  NZ_JNBP01000107
WGS_SCAFLD  NZ_JNBP01000110-NZ_JNBP01000111
WGS_SCAFLD  NZ_JNBP01000120-NZ_JNBP01000121
WGS_SCAFLD  NZ_JNBP01000124-NZ_JNBP01000125
WGS_SCAFLD  NZ_JNBP01000129-NZ_JNBP01000130
WGS_SCAFLD  NZ_JNBP01000137
WGS_SCAFLD  NZ_JNBP01000140
WGS_SCAFLD  NZ_JNBP01000146-NZ_JNBP01000147
WGS_SCAFLD  NZ_JNBP01000150-NZ_JNBP01000152
WGS_SCAFLD  NZ_JNBP01000157-NZ_JNBP01000161
WGS_SCAFLD  NZ_JNBP01000170-NZ_JNBP01000171
WGS_SCAFLD  NZ_JNBP01000174
WGS_SCAFLD  NZ_JNBP01000177
WGS_SCAFLD  NZ_JNBP01000180
WGS_SCAFLD  NZ_JNBP01000183-NZ_JNBP01000187
WGS_SCAFLD  NZ_JNBP01000192-NZ_JNBP01000193
WGS_SCAFLD  NZ_JNBP01000197-NZ_JNBP01000229
WGS_SCAFLD  NZ_KN714331-NZ_KN714348
WGS_SCAFLD  NZ_KN714350-NZ_KN714361
WGS_SCAFLD  NZ_KN714363-NZ_KN714370
WGS_SCAFLD  NZ_KN714372-NZ_KN714382
//
LOCUS       NZ_AFHN01000000      3860835 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora ACW56400, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AFHN00000000
VERSION     NZ_AFHN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02469387
            Assembly: GCF_000240705.2
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora ACW56400
  ORGANISM  Erwinia amylovora ACW56400
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3860835)
  AUTHORS   Mann,R.A., Smits,T.H.M., Buehlmann,A., Blom,J., Goesmann,A.,
            Frey,J.E., Plummer,K.M., Beer,S.V., Luck,J., Duffy,B. and Rodoni,B.
  TITLE     Comparative genomics of 12 strains of Erwinia amylovora identifies
            a pan-genome with a large conserved core and provides insights into
            host specificity
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3860835)
  AUTHORS   Mann,R.A., Smits,T.H.M., Buehlmann,A., Blom,J., Goesmann,A.,
            Frey,J.E., Plummer,K.M., Beer,S.V., Luck,J., Duffy,B. and Rodoni,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-NOV-2012) Center for Biotechnology (CeBiTec),
            Bielefeld University, Universitaetsstr. 25, Bielefeld 33615,
            Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AFHN00000000.1.
            
            On Dec 31, 2014 this sequence version replaced gi:428787192.
            The Erwinia amylovora ACW56400 whole genome shotgun (WGS) project
            has the project accession NZ_AFHN00000000.  This version of the
            project (01) has the accession number NZ_AFHN01000000, and consists
            of sequences AFHN01000001-AFHN01000023.
            Source DNA available from: Brion Duffy, Forschungsanstalt Agroscope
            Changins-Wadenswil ACW, Schloss, Postfach CH-8820 Wadenswil,
            Switzerland.
            
            The complete plasmid pEA70 was deposited in GenBank Accession
            Number CP002951.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: DNASTAR NGen v. 2.0; manual improvements
            Genome Coverage       :: 43.4x
            Sequencing Technology :: Illumina GA IIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000240705.2-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:05:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,570
            CDSs (total)                      :: 3,482
            Genes (coding)                    :: 3,379
            CDSs (with protein)               :: 3,379
            Genes (RNA)                       :: 88
            tRNAs                             :: 66
            ncRNAs                            :: 22
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 55 of 103
            Pseudo Genes (incomplete)         :: 59 of 103
            Pseudo Genes (internal stop)      :: 28 of 103
            Pseudo Genes (multiple problems)  :: 31 of 103
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3860835
                     /organism="Erwinia amylovora ACW56400"
                     /mol_type="genomic DNA"
                     /strain="ACW56400"
                     /db_xref="taxon:1027397"
WGS         AFHN01000001-AFHN01000023
WGS_SCAFLD  CP002951
WGS_SCAFLD  NC_018999
WGS_SCAFLD  NZ_AFHN01000001-NZ_AFHN01000023
//
LOCUS       NZ_JAAEUO010000000   3841692 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain IH-3-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEUO000000000
VERSION     NZ_JAAEUO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919259
            Assembly: GCF_012371495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3841692)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3841692)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEUO000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEUO000000000.  This version of the project
            (01) has the accession number NZ_JAAEUO010000000, and consists of
            sequences JAAEUO010000001-JAAEUO010000106.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 61x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012371495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:12:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,568
            CDSs (total)                      :: 3,524
            Genes (coding)                    :: 3,416
            CDSs (with protein)               :: 3,416
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 57 of 108
            Pseudo Genes (incomplete)         :: 71 of 108
            Pseudo Genes (internal stop)      :: 23 of 108
            Pseudo Genes (multiple problems)  :: 34 of 108
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3841692
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="IH-3-1"
                     /host="Rhaphiolepis indica"
                     /db_xref="taxon:552"
                     /geo_loc_name="USA: Louisiana"
                     /collection_date="1998"
WGS         JAAEUO010000001-JAAEUO010000106
WGS_SCAFLD  NZ_JAAEUO010000001-NZ_JAAEUO010000106
//
LOCUS       NZ_JAAEWZ010000000   3865488 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain 1480-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEWZ000000000
VERSION     NZ_JAAEWZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919276
            Assembly: GCF_012367875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3865488)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3865488)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEWZ000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEWZ000000000.  This version of the project
            (01) has the accession number NZ_JAAEWZ010000000, and consists of
            sequences JAAEWZ010000001-JAAEWZ010000089.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012367875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:17:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,572
            CDSs (total)                      :: 3,528
            Genes (coding)                    :: 3,424
            CDSs (with protein)               :: 3,424
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 49 of 104
            Pseudo Genes (incomplete)         :: 66 of 104
            Pseudo Genes (internal stop)      :: 25 of 104
            Pseudo Genes (multiple problems)  :: 28 of 104
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3865488
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="1480-3"
                     /host="Malus domestica"
                     /db_xref="taxon:552"
                     /geo_loc_name="Canada: British Columbia"
                     /collection_date="1997"
WGS         JAAEWZ010000001-JAAEWZ010000089
WGS_SCAFLD  NZ_JAAEWZ010000001-NZ_JAAEWZ010000089
//
LOCUS       NZ_JAAEXP010000000   3786913 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain 1612, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEXP000000000
VERSION     NZ_JAAEXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919284
            Assembly: GCF_012368185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3786913)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3786913)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEXP000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEXP000000000.  This version of the project
            (01) has the accession number NZ_JAAEXP010000000, and consists of
            sequences JAAEXP010000001-JAAEXP010000134.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 117x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012368185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:23:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,478
            CDSs (total)                      :: 3,439
            Genes (coding)                    :: 3,329
            CDSs (with protein)               :: 3,329
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 30
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 53 of 110
            Pseudo Genes (incomplete)         :: 67 of 110
            Pseudo Genes (internal stop)      :: 27 of 110
            Pseudo Genes (multiple problems)  :: 29 of 110
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3786913
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="1612"
                     /host="Malus domestica"
                     /db_xref="taxon:552"
                     /geo_loc_name="Canada: British Columbia"
                     /collection_date="1998"
WGS         JAAEXP010000001-JAAEXP010000134
WGS_SCAFLD  NZ_JAAEXP010000001-NZ_JAAEXP010000134
//
LOCUS       NZ_JAAEXN010000000   3841882 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain 1619, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEXN000000000
VERSION     NZ_JAAEXN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919286
            Assembly: GCF_012368175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3841882)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3841882)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEXN000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEXN000000000.  This version of the project
            (01) has the accession number NZ_JAAEXN010000000, and consists of
            sequences JAAEXN010000001-JAAEXN010000082.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012368175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:21:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,540
            CDSs (total)                      :: 3,497
            Genes (coding)                    :: 3,393
            CDSs (with protein)               :: 3,393
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 1 of 104
            Pseudo Genes (frameshifted)       :: 50 of 104
            Pseudo Genes (incomplete)         :: 68 of 104
            Pseudo Genes (internal stop)      :: 23 of 104
            Pseudo Genes (multiple problems)  :: 30 of 104
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3841882
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="1619"
                     /host="Malus domestica"
                     /db_xref="taxon:552"
                     /geo_loc_name="Canada: British Columbia"
                     /collection_date="1998"
WGS         JAAEXN010000001-JAAEXN010000082
WGS_SCAFLD  NZ_JAAEXN010000001-NZ_JAAEXN010000082
//
LOCUS       NZ_VFRT01000000      1810610 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Francisella tularensis strain BZ10, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VFRT00000000
VERSION     NZ_VFRT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12071630
            Assembly: GCF_015572125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Francisella tularensis
  ORGANISM  Francisella tularensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Thiotrichales; Francisellaceae; Francisella.
REFERENCE   1  (bases 1 to 1810610)
  AUTHORS   Myrtennas,K., Escudero,R., Zaballos,A., Gonzalez-Martin-Nino,R.,
            Gyuranecz,M. and Johansson,A.
  TITLE     Genetic Traces of the Francisella tularensis Colonization of Spain,
            1998-2020
  JOURNAL   Microorganisms 8 (11), 1784 (2020)
   PUBMED   33202547
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810610)
  AUTHORS   Myrtennaes,K., Escudero,R., Zaballos,A., Gyuranecz,M. and
            Johansson,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUN-2019) CBRN Defence and Security, Swedish Defence
            Research Agency (FOI), Cementv 20, Umea 90182, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VFRT00000000.1.
            The Francisella tularensis whole genome shotgun (WGS) project has
            the project accession NZ_VFRT00000000.  This version of the project
            (01) has the accession number NZ_VFRT01000000, and consists of
            sequences VFRT01000001-VFRT01000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 27-MAR-2017
            Assembly Method        :: ABySS v. 1.5.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 417x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015572125.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:22:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,908
            CDSs (total)                      :: 1,846
            Genes (coding)                    :: 1,550
            CDSs (with protein)               :: 1,550
            Genes (RNA)                       :: 62
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 296
            CDSs (without protein)            :: 296
            Pseudo Genes (ambiguous residues) :: 0 of 296
            Pseudo Genes (frameshifted)       :: 147 of 296
            Pseudo Genes (incomplete)         :: 114 of 296
            Pseudo Genes (internal stop)      :: 102 of 296
            Pseudo Genes (multiple problems)  :: 61 of 296
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810610
                     /organism="Francisella tularensis"
                     /mol_type="genomic DNA"
                     /strain="BZ10"
                     /host="Homo sapiens"
                     /db_xref="taxon:263"
                     /geo_loc_name="Spain: Soria"
                     /collection_date="2015"
                     /genotype="B.61"
WGS         VFRT01000001-VFRT01000088
WGS_SCAFLD  NZ_VFRT01000001-NZ_VFRT01000088
//
LOCUS       NZ_JAAEVY010000000   3852123 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain Ea160-4-51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAEVY000000000
VERSION     NZ_JAAEVY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919257
            Assembly: GCF_012371755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3852123)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3852123)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEVY000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEVY000000000.  This version of the project
            (01) has the accession number NZ_JAAEVY010000000, and consists of
            sequences JAAEVY010000001-JAAEVY010000098.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 118x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012371755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:27:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,594
            CDSs (total)                      :: 3,550
            Genes (coding)                    :: 3,443
            CDSs (with protein)               :: 3,443
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 58 of 107
            Pseudo Genes (incomplete)         :: 69 of 107
            Pseudo Genes (internal stop)      :: 28 of 107
            Pseudo Genes (multiple problems)  :: 38 of 107
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852123
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="Ea160-4-51"
                     /host="Pyrus communis"
                     /db_xref="taxon:552"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2016"
WGS         JAAEVY010000001-JAAEVY010000098
WGS_SCAFLD  NZ_JAAEVY010000001-NZ_JAAEVY010000098
//
LOCUS       NZ_JAAEWW010000000   3819464 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain 241/07, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEWW000000000
VERSION     NZ_JAAEWW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919322
            Assembly: GCF_012367795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3819464)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3819464)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEWW000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEWW000000000.  This version of the project
            (01) has the accession number NZ_JAAEWW010000000, and consists of
            sequences JAAEWW010000001-JAAEWW010000083.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. Jan-2018
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 270x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012367795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:29:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,515
            CDSs (total)                      :: 3,472
            Genes (coding)                    :: 3,364
            CDSs (with protein)               :: 3,364
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 52 of 108
            Pseudo Genes (incomplete)         :: 65 of 108
            Pseudo Genes (internal stop)      :: 27 of 108
            Pseudo Genes (multiple problems)  :: 28 of 108
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3819464
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="241/07"
                     /host="Pyrus communis"
                     /db_xref="taxon:552"
                     /geo_loc_name="Israel"
                     /collection_date="2007"
WGS         JAAEWW010000001-JAAEWW010000083
WGS_SCAFLD  NZ_JAAEWW010000001-NZ_JAAEWW010000083
//
LOCUS       NZ_JAAEVO010000000   3830438 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain Ea321, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEVO000000000
VERSION     NZ_JAAEVO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919324
            Assembly: GCF_012367275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3830438)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3830438)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEVO000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEVO000000000.  This version of the project
            (01) has the accession number NZ_JAAEVO010000000, and consists of
            sequences JAAEVO010000001-JAAEVO010000093.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. Jan-2018
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 193x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012367275.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:28:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,526
            CDSs (total)                      :: 3,482
            Genes (coding)                    :: 3,371
            CDSs (with protein)               :: 3,371
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 52 of 111
            Pseudo Genes (incomplete)         :: 68 of 111
            Pseudo Genes (internal stop)      :: 27 of 111
            Pseudo Genes (multiple problems)  :: 28 of 111
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830438
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="Ea321"
                     /host="Pyrus communis"
                     /db_xref="taxon:552"
                     /geo_loc_name="Israel"
WGS         JAAEVO010000001-JAAEVO010000093
WGS_SCAFLD  NZ_JAAEVO010000001-NZ_JAAEVO010000093
//
LOCUS       NZ_JAFCRE010000000   1785402 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Francisella tularensis subsp. holarctica strain Tul-20_KZ, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JAFCRE000000000
VERSION     NZ_JAFCRE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17766977
            Assembly: GCF_017312195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Francisella tularensis subsp. holarctica
  ORGANISM  Francisella tularensis subsp. holarctica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Thiotrichales; Francisellaceae; Francisella.
REFERENCE   1  (bases 1 to 1785402)
  AUTHORS   Shevtsov,V., Kairzhanova,A., Shevtsov,A., Shustov,A., Kalendar,R.,
            Abdrakhmanov,S., Lukhnova,L., Izbanova,U., Ramanculov,E. and
            Vergnaud,G.
  TITLE     Genetic diversity of Francisella tularensis subsp. holarcticain
            Kazakhstan
  JOURNAL   PLoS Negl Trop Dis (2021) In press
REFERENCE   2  (bases 1 to 1785402)
  AUTHORS   Shevtsov,A., Vergnaud,G., Shevtsov,V., Amirgazin,A. and
            Kairzhanova,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-FEB-2021) Laboratory of Applide Genetics, National
            Center for Biotechnology, Kurgalzhynskoye Road, 13/5, Nur-Sultan,
            Akmola Region 010000, Kazakhstan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFCRE000000000.1.
            The Francisella tularensis subsp. holarctica whole genome shotgun
            (WGS) project has the project accession NZ_JAFCRE000000000.  This
            version of the project (01) has the accession number
            NZ_JAFCRE010000000, and consists of sequences
            JAFCRE010000001-JAFCRE010000095.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2020
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 115x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017312195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,901
            CDSs (total)                      :: 1,857
            Genes (coding)                    :: 1,550
            CDSs (with protein)               :: 1,550
            Genes (RNA)                       :: 44
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 307
            CDSs (without protein)            :: 307
            Pseudo Genes (ambiguous residues) :: 0 of 307
            Pseudo Genes (frameshifted)       :: 142 of 307
            Pseudo Genes (incomplete)         :: 136 of 307
            Pseudo Genes (internal stop)      :: 94 of 307
            Pseudo Genes (multiple problems)  :: 58 of 307
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785402
                     /organism="Francisella tularensis subsp. holarctica"
                     /mol_type="genomic DNA"
                     /strain="Tul-20_KZ"
                     /isolation_source="suspension"
                     /host="Tick"
                     /sub_species="holarctica"
                     /db_xref="taxon:119857"
                     /geo_loc_name="Kazakhstan: Pavlodar"
                     /lat_lon="49.23 N 51.24 E"
                     /collection_date="2016-07-09"
                     /collected_by="M. Aikimbayevs National Scientific Center
                     for Especially Dangerous Infections (NSCEDI)"
WGS         JAFCRE010000001-JAFCRE010000095
WGS_SCAFLD  NZ_JAFCRE010000001-NZ_JAFCRE010000095
//
LOCUS       NZ_JAAEWA010000000   3796446 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain Ea123-5-51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAEWA000000000
VERSION     NZ_JAAEWA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919256
            Assembly: GCF_012367535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3796446)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3796446)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEWA000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEWA000000000.  This version of the project
            (01) has the accession number NZ_JAAEWA010000000, and consists of
            sequences JAAEWA010000001-JAAEWA010000087.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 179x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012367535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,501
            CDSs (total)                      :: 3,451
            Genes (coding)                    :: 3,355
            CDSs (with protein)               :: 3,355
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 44 of 96
            Pseudo Genes (incomplete)         :: 69 of 96
            Pseudo Genes (internal stop)      :: 28 of 96
            Pseudo Genes (multiple problems)  :: 35 of 96
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3796446
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="Ea123-5-51"
                     /host="Malus domestica"
                     /db_xref="taxon:552"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2016"
WGS         JAAEWA010000001-JAAEWA010000087
WGS_SCAFLD  NZ_JAAEWA010000001-NZ_JAAEWA010000087
//
LOCUS       NZ_JAAEWB010000000   3869003 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain Ea12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEWB000000000
VERSION     NZ_JAAEWB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919289
            Assembly: GCF_012367545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3869003)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3869003)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEWB000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEWB000000000.  This version of the project
            (01) has the accession number NZ_JAAEWB010000000, and consists of
            sequences JAAEWB010000001-JAAEWB010000089.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 78x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012367545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:38:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,578
            CDSs (total)                      :: 3,535
            Genes (coding)                    :: 3,423
            CDSs (with protein)               :: 3,423
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 53 of 112
            Pseudo Genes (incomplete)         :: 74 of 112
            Pseudo Genes (internal stop)      :: 25 of 112
            Pseudo Genes (multiple problems)  :: 31 of 112
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3869003
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="Ea12"
                     /host="Pyrus communis"
                     /db_xref="taxon:552"
                     /geo_loc_name="USA: California"
WGS         JAAEWB010000001-JAAEWB010000089
WGS_SCAFLD  NZ_JAAEWB010000001-NZ_JAAEWB010000089
//
LOCUS       NZ_JAYKSQ010000000   2743432 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Flavobacterium psychrophilum strain FP-315, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYKSQ000000000
VERSION     NZ_JAYKSQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38800853
            Assembly: GCF_035751505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Flavobacterium psychrophilum
  ORGANISM  Flavobacterium psychrophilum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Flavobacterium.
REFERENCE   1  (bases 1 to 2743432)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Characterization of Flavobacterium psychrophilum isolates retrieved
            from Turkish rainbow trout farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2743432)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) Aquatic Animal Diseases, Bursa Uludag
            University, Faculty of Veterinary Medicine, Bursa Uludag
            University, Faculty of Veterinary Medicine, Aquatic Animal Diseases
            Department, Nilufer, Bursa 16059, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYKSQ000000000.1.
            The Flavobacterium psychrophilum whole genome shotgun (WGS) project
            has the project accession NZ_JAYKSQ000000000.  This version of the
            project (01) has the accession number NZ_JAYKSQ010000000, and
            consists of sequences JAYKSQ010000001-JAYKSQ010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2022
            Assembly Method        :: SPAdes v. 3.13.0.
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 218x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035751505.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:00:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,458
            CDSs (total)                      :: 2,410
            Genes (coding)                    :: 2,390
            CDSs (with protein)               :: 2,390
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 4 of 20
            Pseudo Genes (incomplete)         :: 18 of 20
            Pseudo Genes (internal stop)      :: 4 of 20
            Pseudo Genes (multiple problems)  :: 5 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2743432
                     /organism="Flavobacterium psychrophilum"
                     /mol_type="genomic DNA"
                     /strain="FP-315"
                     /isolation_source="kidney"
                     /host="Oncorhynchus mykiss"
                     /db_xref="taxon:96345"
                     /geo_loc_name="Turkey: Aegean Region, Mugla"
                     /collection_date="2017"
WGS         JAYKSQ010000001-JAYKSQ010000050
WGS_SCAFLD  NZ_JAYKSQ010000001-NZ_JAYKSQ010000050
//
LOCUS       NZ_JARUSQ010000000   2209641 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS53 HEBBD 2019-11, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUSQ000000000
VERSION     NZ_JARUSQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34073905
            Assembly: GCF_029763655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2209641)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2209641)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUSQ000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUSQ000000000.  This version of the
            project (01) has the accession number NZ_JARUSQ010000000, and
            consists of sequences JARUSQ010000001-JARUSQ010000183.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029763655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:52:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,226
            CDSs (total)                      :: 2,177
            Genes (coding)                    :: 2,057
            CDSs (with protein)               :: 2,057
            Genes (RNA)                       :: 49
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 26 of 120
            Pseudo Genes (incomplete)         :: 92 of 120
            Pseudo Genes (internal stop)      :: 13 of 120
            Pseudo Genes (multiple problems)  :: 9 of 120
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209641
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS53 HEBBD 2019-11"
                     /serotype="13"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hebei, Baoding"
                     /collection_date="2019-11"
WGS         JARUSQ010000001-JARUSQ010000183
WGS_SCAFLD  NZ_JARUSQ010000001-NZ_JARUSQ010000183
//
LOCUS       NZ_JAYKSS010000000   2750020 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Flavobacterium psychrophilum strain FP-313, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYKSS000000000
VERSION     NZ_JAYKSS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38800851
            Assembly: GCF_035752005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Flavobacterium psychrophilum
  ORGANISM  Flavobacterium psychrophilum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Flavobacterium.
REFERENCE   1  (bases 1 to 2750020)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Characterization of Flavobacterium psychrophilum isolates retrieved
            from Turkish rainbow trout farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2750020)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) Aquatic Animal Diseases, Bursa Uludag
            University, Faculty of Veterinary Medicine, Bursa Uludag
            University, Faculty of Veterinary Medicine, Aquatic Animal Diseases
            Department, Nilufer, Bursa 16059, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYKSS000000000.1.
            The Flavobacterium psychrophilum whole genome shotgun (WGS) project
            has the project accession NZ_JAYKSS000000000.  This version of the
            project (01) has the accession number NZ_JAYKSS010000000, and
            consists of sequences JAYKSS010000001-JAYKSS010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2022
            Assembly Method        :: SPAdes v. 3.13.0.
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035752005.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:04:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,468
            CDSs (total)                      :: 2,420
            Genes (coding)                    :: 2,398
            CDSs (with protein)               :: 2,398
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 16 of 22
            Pseudo Genes (internal stop)      :: 8 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750020
                     /organism="Flavobacterium psychrophilum"
                     /mol_type="genomic DNA"
                     /strain="FP-313"
                     /isolation_source="kidney"
                     /host="Oncorhynchus mykiss"
                     /db_xref="taxon:96345"
                     /geo_loc_name="Turkey: Aegean Region, Mugla"
                     /collection_date="2017"
WGS         JAYKSS010000001-JAYKSS010000047
WGS_SCAFLD  NZ_JAYKSS010000001-NZ_JAYKSS010000047
//
LOCUS       NZ_NFHQ01000000      1992489 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain An69, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NFHQ00000000
VERSION     NZ_NFHQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06473747
            Assembly: GCF_002161395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 1992489)
  AUTHORS   Medvecky,M., Cejkova,D., Polansky,O., Karasova,D., Kubasova,T.,
            Cizek,A. and Rychlik,I.
  TITLE     Whole genome sequencing and function prediction of 133 gut
            anaerobes isolated from chicken caecum in pure cultures
  JOURNAL   BMC Genomics 19 (1), 561 (2018)
   PUBMED   30064352
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992489)
  AUTHORS   Medvecky,M., Cejkova,D., Polansky,O., Karasova,D., Kubasova,T.,
            Cizek,A. and Rychlik,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-APR-2017) Immunology, Veterinary Research Institute,
            Hudciova 70, Brno 62100, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NFHQ00000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_NFHQ00000000.  This version of the project
            (01) has the accession number NZ_NFHQ01000000, and consists of
            sequences NFHQ01000001-NFHQ01000044.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA_UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 352x
            Sequencing Technology  :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002161395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:33:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,007
            CDSs (total)                      :: 1,931
            Genes (coding)                    :: 1,875
            CDSs (with protein)               :: 1,875
            Genes (RNA)                       :: 76
            rRNAs                             :: 5, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 16 of 56
            Pseudo Genes (incomplete)         :: 37 of 56
            Pseudo Genes (internal stop)      :: 15 of 56
            Pseudo Genes (multiple problems)  :: 11 of 56
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992489
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="An69"
                     /isolation_source="caecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /collection_date="2016"
WGS         NFHQ01000001-NFHQ01000044
WGS_SCAFLD  NZ_NFHQ01000001-NZ_NFHQ01000044
//
LOCUS       NZ_JAYKSU010000000   2760328 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Flavobacterium psychrophilum strain FP-123, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYKSU000000000
VERSION     NZ_JAYKSU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38800849
            Assembly: GCF_035752305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Flavobacterium psychrophilum
  ORGANISM  Flavobacterium psychrophilum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Flavobacterium.
REFERENCE   1  (bases 1 to 2760328)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Characterization of Flavobacterium psychrophilum isolates retrieved
            from Turkish rainbow trout farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2760328)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) Aquatic Animal Diseases, Bursa Uludag
            University, Faculty of Veterinary Medicine, Bursa Uludag
            University, Faculty of Veterinary Medicine, Aquatic Animal Diseases
            Department, Nilufer, Bursa 16059, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYKSU000000000.1.
            The Flavobacterium psychrophilum whole genome shotgun (WGS) project
            has the project accession NZ_JAYKSU000000000.  This version of the
            project (01) has the accession number NZ_JAYKSU010000000, and
            consists of sequences JAYKSU010000001-JAYKSU010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2022
            Assembly Method        :: SPAdes v. 3.13.0.
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 234x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035752305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:00:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,483
            CDSs (total)                      :: 2,434
            Genes (coding)                    :: 2,412
            CDSs (with protein)               :: 2,412
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 4 of 22
            Pseudo Genes (incomplete)         :: 20 of 22
            Pseudo Genes (internal stop)      :: 4 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2760328
                     /organism="Flavobacterium psychrophilum"
                     /mol_type="genomic DNA"
                     /strain="FP-123"
                     /isolation_source="kidney"
                     /host="Oncorhynchus mykiss"
                     /db_xref="taxon:96345"
                     /geo_loc_name="Turkey: East Anatolia Region, Elazg"
                     /collection_date="2015"
WGS         JAYKSU010000001-JAYKSU010000063
WGS_SCAFLD  NZ_JAYKSU010000001-NZ_JAYKSU010000063
//
LOCUS       NZ_JAYKTA010000000   2756401 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Flavobacterium psychrophilum strain FP-73, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYKTA000000000
VERSION     NZ_JAYKTA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38800843
            Assembly: GCF_035752705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Flavobacterium psychrophilum
  ORGANISM  Flavobacterium psychrophilum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Flavobacterium.
REFERENCE   1  (bases 1 to 2756401)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Characterization of Flavobacterium psychrophilum isolates retrieved
            from Turkish rainbow trout farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2756401)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) Aquatic Animal Diseases, Bursa Uludag
            University, Faculty of Veterinary Medicine, Bursa Uludag
            University, Faculty of Veterinary Medicine, Aquatic Animal Diseases
            Department, Nilufer, Bursa 16059, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYKTA000000000.1.
            The Flavobacterium psychrophilum whole genome shotgun (WGS) project
            has the project accession NZ_JAYKTA000000000.  This version of the
            project (01) has the accession number NZ_JAYKTA010000000, and
            consists of sequences JAYKTA010000001-JAYKTA010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2022
            Assembly Method        :: SPAdes v. 3.13.0.
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035752705.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:01:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,474
            CDSs (total)                      :: 2,426
            Genes (coding)                    :: 2,406
            CDSs (with protein)               :: 2,406
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 4 of 20
            Pseudo Genes (incomplete)         :: 17 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 5 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2756401
                     /organism="Flavobacterium psychrophilum"
                     /mol_type="genomic DNA"
                     /strain="FP-73"
                     /isolation_source="kidney"
                     /host="Oncorhynchus mykiss"
                     /db_xref="taxon:96345"
                     /geo_loc_name="Turkey: Central Anatolia Region, Kayseri"
                     /collection_date="2014"
WGS         JAYKTA010000001-JAYKTA010000050
WGS_SCAFLD  NZ_JAYKTA010000001-NZ_JAYKTA010000050
//
LOCUS       NZ_MJDQ01000000      3042973 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain F1129E 113, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MJDQ00000000
VERSION     NZ_MJDQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05735014
            Assembly: GCF_002077575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3042973)
  AUTHORS   Beukers,A.G., Zaheer,R., Goji,N., Amoako,K.K., Chaves,A.V.,
            Ward,M.P. and McAllister,T.A.
  TITLE     Comparative genomics of Enterococcus spp. isolated from bovine
            feces
  JOURNAL   BMC Microbiol 17 (1), 52 (2017)
   PUBMED   28270110
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042973)
  AUTHORS   Beukers,A.G., Zaheer,R., Goji,N., Amoako,K., Chaves,A.V., Ward,M.P.
            and Mcallister,T.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2016) Agriculture and Agri-Food Canada,
            Lethbridge Research Centre, PO Box 3000 5403 1st Ave S.,
            Lethbridge, Alberta T1J 4B1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MJDQ00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_MJDQ00000000.  This version of the project
            (01) has the accession number NZ_MJDQ01000000, and consists of
            sequences MJDQ01000001-MJDQ01000028.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002077575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,871
            CDSs (total)                      :: 2,797
            Genes (coding)                    :: 2,730
            CDSs (with protein)               :: 2,730
            Genes (RNA)                       :: 74
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 33 of 67
            Pseudo Genes (incomplete)         :: 47 of 67
            Pseudo Genes (internal stop)      :: 14 of 67
            Pseudo Genes (multiple problems)  :: 21 of 67
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042973
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="F1129E 113"
                     /isolation_source="feces"
                     /host="Bos taurus"
                     /db_xref="taxon:1354"
                     /geo_loc_name="Canada: Lethbridge"
                     /lat_lon="49.7 N 112.75 W"
                     /collection_date="2004-11-29"
WGS         MJDQ01000001-MJDQ01000028
WGS_SCAFLD  NZ_MJDQ01000001-NZ_MJDQ01000028
//
LOCUS       NZ_JAYKSR010000000   2748342 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Flavobacterium psychrophilum strain FP-314, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYKSR000000000
VERSION     NZ_JAYKSR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN38800852
            Assembly: GCF_035751745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Flavobacterium psychrophilum
  ORGANISM  Flavobacterium psychrophilum
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Flavobacterium.
REFERENCE   1  (bases 1 to 2748342)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Characterization of Flavobacterium psychrophilum isolates retrieved
            from Turkish rainbow trout farms
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2748342)
  AUTHORS   Saticioglu,I.B., Duman,M., Altun,S., Ajmi,N., Rochat,T. and
            Duchaud,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2023) Aquatic Animal Diseases, Bursa Uludag
            University, Faculty of Veterinary Medicine, Bursa Uludag
            University, Faculty of Veterinary Medicine, Aquatic Animal Diseases
            Department, Nilufer, Bursa 16059, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYKSR000000000.1.
            The Flavobacterium psychrophilum whole genome shotgun (WGS) project
            has the project accession NZ_JAYKSR000000000.  This version of the
            project (01) has the accession number NZ_JAYKSR010000000, and
            consists of sequences JAYKSR010000001-JAYKSR010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2022
            Assembly Method        :: SPAdes v. 3.13.0.
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 117x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_035751745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:05:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,463
            CDSs (total)                      :: 2,415
            Genes (coding)                    :: 2,395
            CDSs (with protein)               :: 2,395
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 5 of 20
            Pseudo Genes (incomplete)         :: 14 of 20
            Pseudo Genes (internal stop)      :: 7 of 20
            Pseudo Genes (multiple problems)  :: 5 of 20
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748342
                     /organism="Flavobacterium psychrophilum"
                     /mol_type="genomic DNA"
                     /strain="FP-314"
                     /isolation_source="kidney"
                     /host="Oncorhynchus mykiss"
                     /db_xref="taxon:96345"
                     /geo_loc_name="Turkey: Aegean Region, Mugla"
                     /collection_date="2017"
WGS         JAYKSR010000001-JAYKSR010000048
WGS_SCAFLD  NZ_JAYKSR010000001-NZ_JAYKSR010000048
//
LOCUS       NZ_MJDR01000000      2869170 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain F0221F 224, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MJDR00000000
VERSION     NZ_MJDR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05735015
            Assembly: GCF_002077325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2869170)
  AUTHORS   Beukers,A.G., Zaheer,R., Goji,N., Amoako,K.K., Chaves,A.V.,
            Ward,M.P. and McAllister,T.A.
  TITLE     Comparative genomics of Enterococcus spp. isolated from bovine
            feces
  JOURNAL   BMC Microbiol 17 (1), 52 (2017)
   PUBMED   28270110
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869170)
  AUTHORS   Beukers,A.G., Zaheer,R., Goji,N., Amoako,K., Chaves,A.V., Ward,M.P.
            and Mcallister,T.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2016) Agriculture and Agri-Food Canada,
            Lethbridge Research Centre, PO Box 3000 5403 1st Ave S.,
            Lethbridge, Alberta T1J 4B1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MJDR00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_MJDR00000000.  This version of the project
            (01) has the accession number NZ_MJDR01000000, and consists of
            sequences MJDR01000001-MJDR01000028.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002077325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,740
            CDSs (total)                      :: 2,667
            Genes (coding)                    :: 2,590
            CDSs (with protein)               :: 2,590
            Genes (RNA)                       :: 73
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 34 of 77
            Pseudo Genes (incomplete)         :: 34 of 77
            Pseudo Genes (internal stop)      :: 27 of 77
            Pseudo Genes (multiple problems)  :: 13 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869170
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="F0221F 224"
                     /isolation_source="feces"
                     /host="Bos taurus"
                     /db_xref="taxon:1354"
                     /geo_loc_name="Canada: Lethbridge"
                     /lat_lon="49.7 N 112.75 W"
                     /collection_date="2005-02-21"
WGS         MJDR01000001-MJDR01000028
WGS_SCAFLD  NZ_MJDR01000001-NZ_MJDR01000028
//
LOCUS       NZ_MJDO01000000      2850950 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain F0711F 57, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MJDO00000000
VERSION     NZ_MJDO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05735011
            Assembly: GCF_002077275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2850950)
  AUTHORS   Beukers,A.G., Zaheer,R., Goji,N., Amoako,K.K., Chaves,A.V.,
            Ward,M.P. and McAllister,T.A.
  TITLE     Comparative genomics of Enterococcus spp. isolated from bovine
            feces
  JOURNAL   BMC Microbiol 17 (1), 52 (2017)
   PUBMED   28270110
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2850950)
  AUTHORS   Beukers,A.G., Zaheer,R., Goji,N., Amoako,K., Chaves,A.V., Ward,M.P.
            and Mcallister,T.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2016) Agriculture and Agri-Food Canada,
            Lethbridge Research Centre, PO Box 3000 5403 1st Ave S.,
            Lethbridge, Alberta T1J 4B1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MJDO00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_MJDO00000000.  This version of the project
            (01) has the accession number NZ_MJDO01000000, and consists of
            sequences MJDO01000001-MJDO01000029.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002077275.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,733
            CDSs (total)                      :: 2,658
            Genes (coding)                    :: 2,593
            CDSs (with protein)               :: 2,593
            Genes (RNA)                       :: 75
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 29 of 65
            Pseudo Genes (incomplete)         :: 36 of 65
            Pseudo Genes (internal stop)      :: 21 of 65
            Pseudo Genes (multiple problems)  :: 13 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2850950
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="F0711F 57"
                     /isolation_source="feces"
                     /host="Bos taurus"
                     /db_xref="taxon:1354"
                     /geo_loc_name="Canada: Lethbridge"
                     /lat_lon="49.7 N 112.75 W"
                     /collection_date="2005-07-11"
WGS         MJDO01000001-MJDO01000029
WGS_SCAFLD  NZ_MJDO01000001-NZ_MJDO01000029
//
LOCUS       NZ_LESH01000000      2848747 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain 321EA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LESH00000000
VERSION     NZ_LESH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02729198
            Assembly: GCF_003321035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2848747)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Enterococcus hirae 321EA1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2848747)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2015) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LESH00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_LESH00000000.  This version of the project
            (01) has the accession number NZ_LESH01000000, and consists of
            sequences LESH01000001-LESH01000010.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R48559
            Genome Coverage       :: 129.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003321035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:09:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,688
            CDSs (total)                      :: 2,597
            Genes (coding)                    :: 2,533
            CDSs (with protein)               :: 2,533
            Genes (RNA)                       :: 91
            rRNAs                             :: 8, 9, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 3, 8 (5S, 16S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 30 of 64
            Pseudo Genes (incomplete)         :: 30 of 64
            Pseudo Genes (internal stop)      :: 22 of 64
            Pseudo Genes (multiple problems)  :: 14 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848747
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="321EA1"
                     /isolation_source="Breast meat"
                     /host="Gallus gallus domesticus"
                     /db_xref="taxon:1354"
                     /geo_loc_name="USA: Detroit, MI"
WGS         LESH01000001-LESH01000010
WGS_SCAFLD  NZ_KZ846671-NZ_KZ846675
//
LOCUS       NZ_CBBHTY010000000   2241608 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Flavobacterium sp. isolate
            PELAGICS-MAG-x4-bin076773-AYDTH-SM-23may22., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBHTY000000000
VERSION     NZ_CBBHTY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117457517
            Assembly: GCF_964889215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Flavobacterium sp. (freshwater metagenome)
  ORGANISM  Flavobacterium sp.
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Flavobacterium.
REFERENCE   1  (bases 1 to 2241608)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBHTY000000000.1.
            The Flavobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBHTY000000000.  This version of the project
            (01) has the accession number NZ_CBBHTY010000000, and consists of
            sequences CBBHTY010000001-CBBHTY010000029.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964889215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:19:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,052
            CDSs (total)                      :: 2,009
            Genes (coding)                    :: 2,000
            CDSs (with protein)               :: 2,000
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 1 of 9
            Pseudo Genes (incomplete)         :: 5 of 9
            Pseudo Genes (internal stop)      :: 3 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241608
                     /organism="Flavobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-x4-bin076773-AYDTH-SM-23may22."
                     /isolation_source="Aydat lake"
                     /db_xref="taxon:239"
                     /environmental_sample
                     /geo_loc_name="France"
                     /collection_date="2022-05-23"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBHTY010000001-CBBHTY010000029
WGS_SCAFLD  NZ_CBBHTY010000001-NZ_CBBHTY010000029
//
LOCUS       NZ_LESG01000000      2924806 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain 269EA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LESG00000000
VERSION     NZ_LESG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02729178
            Assembly: GCF_003321015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2924806)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Enterococcus hirae 269EA1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2924806)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2015) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LESG00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_LESG00000000.  This version of the project
            (01) has the accession number NZ_LESG01000000, and consists of
            sequences LESG01000001-LESG01000018.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R48559
            Genome Coverage       :: 128.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003321015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:07:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,772
            CDSs (total)                      :: 2,698
            Genes (coding)                    :: 2,632
            CDSs (with protein)               :: 2,632
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 6, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 6, 5 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 26 of 66
            Pseudo Genes (incomplete)         :: 37 of 66
            Pseudo Genes (internal stop)      :: 18 of 66
            Pseudo Genes (multiple problems)  :: 12 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2924806
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="269EA1"
                     /isolation_source="Breast meat"
                     /host="Gallus gallus domesticus"
                     /db_xref="taxon:1354"
                     /geo_loc_name="USA: Boston, MA"
WGS         LESG01000001-LESG01000018
WGS_SCAFLD  NZ_KZ846676-NZ_KZ846686
//
LOCUS       NZ_LESC01000000      3045217 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain 126EA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LESC00000000
VERSION     NZ_LESC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02729143
            Assembly: GCF_003320915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3045217)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Enterococcus hirae 126EA1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3045217)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2015) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LESC00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_LESC00000000.  This version of the project
            (01) has the accession number NZ_LESC01000000, and consists of
            sequences LESC01000001-LESC01000018.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R48559
            Genome Coverage       :: 134.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003320915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:17:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,926
            CDSs (total)                      :: 2,846
            Genes (coding)                    :: 2,756
            CDSs (with protein)               :: 2,756
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 30 of 90
            Pseudo Genes (incomplete)         :: 60 of 90
            Pseudo Genes (internal stop)      :: 16 of 90
            Pseudo Genes (multiple problems)  :: 14 of 90
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3045217
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="126EA1"
                     /isolation_source="Breast meat"
                     /host="Gallus gallus domesticus"
                     /db_xref="taxon:1354"
                     /geo_loc_name="USA: Dallas, TX"
WGS         LESC01000001-LESC01000018
WGS_SCAFLD  NZ_KZ846586-NZ_KZ846600
//
LOCUS       NZ_LESD01000000      2976902 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain 175EA1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LESD00000000
VERSION     NZ_LESD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02729153
            Assembly: GCF_003320975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2976902)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Enterococcus hirae 175EA1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2976902)
  AUTHORS   Earl,A.M., Van Tyne,D., Lebreton,F., Saavedra,J.T., Gilmore,M.S.,
            Manson McGuire,A., Clock,S., Crupain,M., Rangan,U., Young,S.,
            Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A., Priest,M., Shea,T.,
            Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2015) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LESD00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_LESD00000000.  This version of the project
            (01) has the accession number NZ_LESD01000000, and consists of
            sequences LESD01000001-LESD01000050.
            Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R48559
            Genome Coverage       :: 133.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003320975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:12:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,864
            CDSs (total)                      :: 2,794
            Genes (coding)                    :: 2,707
            CDSs (with protein)               :: 2,707
            Genes (RNA)                       :: 70
            rRNAs                             :: 3, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 28 of 87
            Pseudo Genes (incomplete)         :: 59 of 87
            Pseudo Genes (internal stop)      :: 15 of 87
            Pseudo Genes (multiple problems)  :: 13 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2976902
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="175EA1"
                     /isolation_source="Breast meat"
                     /host="Gallus gallus domesticus"
                     /db_xref="taxon:1354"
                     /geo_loc_name="USA: St. Paul, MN"
WGS         LESD01000001-LESD01000050
WGS_SCAFLD  NZ_KZ846610-NZ_KZ846636
//
LOCUS       NZ_CBACJG010000000   2205433 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Flavobacterium sp. isolate
            PELAGICS-MAG-m2-bin114223-MOSTE-LM-29sep20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBACJG000000000
VERSION     NZ_CBACJG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117457719
            Assembly: GCF_964676845.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Flavobacterium sp. (freshwater metagenome)
  ORGANISM  Flavobacterium sp.
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Flavobacteriaceae; Flavobacterium.
REFERENCE   1  (bases 1 to 2205433)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBACJG000000000.1.
            The Flavobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBACJG000000000.  This version of the project
            (01) has the accession number NZ_CBACJG010000000, and consists of
            sequences CBACJG010000001-CBACJG010000084.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964676845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:23:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,056
            CDSs (total)                      :: 2,012
            Genes (coding)                    :: 1,991
            CDSs (with protein)               :: 1,991
            Genes (RNA)                       :: 44
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 2 of 21
            Pseudo Genes (incomplete)         :: 19 of 21
            Pseudo Genes (internal stop)      :: 0 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205433
                     /organism="Flavobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin114223-MOSTE-LM-29sep20."
                     /isolation_source="Most lake"
                     /db_xref="taxon:239"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-09-29"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBACJG010000001-CBACJG010000084
WGS_SCAFLD  NZ_CBACJG010000001-NZ_CBACJG010000084
//
LOCUS       NZ_RKPF01000000      3307478 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus gallinarum strain P8 C A14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RKPF00000000
VERSION     NZ_RKPF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10272862
            Assembly: GCF_003797485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus gallinarum
  ORGANISM  Enterococcus gallinarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3307478)
  AUTHORS   Muhammad,A.R. and Diarra,M.S.
  TITLE     Genotypes and phenotypes of Enterococci isolated from broiler
            chickens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3307478)
  AUTHORS   Muhammad,A.R. and Diarra,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2018) Guelph Research and Development Center,
            Agriculture and Agri-Food Canada, 93 Stone Road West, Guelph,
            Ontario N1G 5C9, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RKPF00000000.1.
            The Enterococcus gallinarum whole genome shotgun (WGS) project has
            the project accession NZ_RKPF00000000.  This version of the project
            (01) has the accession number NZ_RKPF01000000, and consists of
            sequences RKPF01000001-RKPF01000038.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 88x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003797485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,239
            CDSs (total)                      :: 3,178
            Genes (coding)                    :: 3,093
            CDSs (with protein)               :: 3,093
            Genes (RNA)                       :: 61
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 27 of 85
            Pseudo Genes (incomplete)         :: 48 of 85
            Pseudo Genes (internal stop)      :: 25 of 85
            Pseudo Genes (multiple problems)  :: 11 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307478
                     /organism="Enterococcus gallinarum"
                     /mol_type="genomic DNA"
                     /strain="P8 C A14"
                     /isolation_source="ceaca"
                     /host="Gallus gallus"
                     /db_xref="taxon:1353"
                     /geo_loc_name="Canada: BC, Agassiz"
                     /collection_date="2005"
                     /collected_by="Moussa Diarra"
WGS         RKPF01000001-RKPF01000038
WGS_SCAFLD  NZ_RKPF01000001-NZ_RKPF01000038
//
LOCUS       NZ_SCHW01000000      3591364 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus casseliflavus strain L4-B, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SCHW00000000
VERSION     NZ_SCHW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10744159
            Assembly: GCF_004099765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus casseliflavus
  ORGANISM  Enterococcus casseliflavus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3591364)
  AUTHORS   Ayala,D.I., Cook,P.W., Franco,J.G., Bugarel,M., Kottapalli,K.R.,
            Loneragan,G.H., Brashears,M. and Nightingale,K.
  TITLE     A systematic approach to identify and characterize the
            effectiveness and safety of novel probiotic strains to control
            foodborne pathogens along the food continuum through combined
            genotypic and phenotypic assays
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3591364)
  AUTHORS   Ayala,D.I., Cook,P.W., Franco,J.G., Bugarel,M., Kottapalli,K.R.,
            Loneragan,G.H., Brashears,M. and Nightingale,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2019) Animal and Food Sciences, Texas Tech
            University, 1008 Canton Ave, Lubbock, TX 79409, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SCHW00000000.1.
            The Enterococcus casseliflavus whole genome shotgun (WGS) project
            has the project accession NZ_SCHW00000000.  This version of the
            project (01) has the accession number NZ_SCHW01000000, and consists
            of sequences SCHW01000001-SCHW01000059.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 56x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004099765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:39:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,428
            CDSs (total)                      :: 3,359
            Genes (coding)                    :: 3,324
            CDSs (with protein)               :: 3,324
            Genes (RNA)                       :: 69
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 15 of 35
            Pseudo Genes (incomplete)         :: 18 of 35
            Pseudo Genes (internal stop)      :: 10 of 35
            Pseudo Genes (multiple problems)  :: 7 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591364
                     /organism="Enterococcus casseliflavus"
                     /mol_type="genomic DNA"
                     /strain="L4-B"
                     /host="bovine"
                     /db_xref="taxon:37734"
                     /geo_loc_name="USA"
                     /collection_date="2013"
WGS         SCHW01000001-SCHW01000059
WGS_SCAFLD  NZ_SCHW01000001-NZ_SCHW01000059
//
LOCUS       NZ_RQWF01000000      2988164 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain C11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RQWF00000000
VERSION     NZ_RQWF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10484943
            Assembly: GCF_004102865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2988164)
  AUTHORS   Yao,W.
  TITLE     Stress tolerance and comparative genomics of Enterococcus durans
            C11
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2988164)
  AUTHORS   Yao,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-NOV-2018) College of Food Science and Technology,
            Shanghai Ocean University, 999 Hu Cheng Huan Road, Shanghai,
            Shanghai 201306, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RQWF00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_RQWF00000000.  This version of the project
            (01) has the accession number NZ_RQWF01000000, and consists of
            sequences RQWF01000001-RQWF01000115.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004102865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:38:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,977
            CDSs (total)                      :: 2,901
            Genes (coding)                    :: 2,723
            CDSs (with protein)               :: 2,723
            Genes (RNA)                       :: 76
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 178
            CDSs (without protein)            :: 178
            Pseudo Genes (ambiguous residues) :: 0 of 178
            Pseudo Genes (frameshifted)       :: 38 of 178
            Pseudo Genes (incomplete)         :: 131 of 178
            Pseudo Genes (internal stop)      :: 47 of 178
            Pseudo Genes (multiple problems)  :: 35 of 178
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988164
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="C11"
                     /isolation_source="kimchi"
                     /db_xref="taxon:53345"
                     /geo_loc_name="China: Shanghai"
                     /collection_date="2014-07"
WGS         RQWF01000001-RQWF01000115
WGS_SCAFLD  NZ_RQWF01000001-NZ_RQWF01000115
//
LOCUS       NZ_WWQW01000000      3030028 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain BIOML-A17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WWQW00000000
VERSION     NZ_WWQW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945378
            Assembly: GCF_009875025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3030028)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 3030028)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WWQW00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_WWQW00000000.  This version of the project
            (01) has the accession number NZ_WWQW01000000, and consists of
            sequences WWQW01000001-WWQW01000114.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 743.752x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009875025.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:58:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,977
            CDSs (total)                      :: 2,921
            Genes (coding)                    :: 2,751
            CDSs (with protein)               :: 2,751
            Genes (RNA)                       :: 56
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 170
            CDSs (without protein)            :: 170
            Pseudo Genes (ambiguous residues) :: 0 of 170
            Pseudo Genes (frameshifted)       :: 19 of 170
            Pseudo Genes (incomplete)         :: 144 of 170
            Pseudo Genes (internal stop)      :: 40 of 170
            Pseudo Genes (multiple problems)  :: 31 of 170
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030028
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A17"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:53345"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WWQW01000001-WWQW01000114
WGS_SCAFLD  NZ_WWQW01000001-NZ_WWQW01000114
//
LOCUS       NZ_JAVLOS010000000   4551811 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Escherichia fergusonii strain 1.3LJC3-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAVLOS000000000
VERSION     NZ_JAVLOS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37344317
            Assembly: GCF_038072255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Escherichia fergusonii
  ORGANISM  Escherichia fergusonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 4551811)
  AUTHORS   Wang,Q., Han,Y.Y., Zhang,T.J., Chen,X., Lin,H., Wang,H.N. and
            Lei,C.W.
  TITLE     Whole-genome sequencing of Escherichia coli from retail meat in
            China reveals the dissemination of clinically important
            antimicrobial resistance genes
  JOURNAL   Int J Food Microbiol 415, 110634 (2024)
   PUBMED   38401379
REFERENCE   2  (bases 1 to 4551811)
  AUTHORS   Wang,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2023) Animal Disease Prevention and Food Safety
            Key Laboratory of Sichuan Province, College of Life Sciences,
            Sichuan University, Wangjiang Road 29#, Chengdu, Sichuan 610064,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAVLOS000000000.1.
            The Escherichia fergusonii whole genome shotgun (WGS) project has
            the project accession NZ_JAVLOS000000000.  This version of the
            project (01) has the accession number NZ_JAVLOS010000000, and
            consists of sequences JAVLOS010000001-JAVLOS010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038072255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:44:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,391
            CDSs (total)                      :: 4,294
            Genes (coding)                    :: 4,204
            CDSs (with protein)               :: 4,204
            Genes (RNA)                       :: 97
            rRNAs                             :: 5, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 30 of 90
            Pseudo Genes (incomplete)         :: 61 of 90
            Pseudo Genes (internal stop)      :: 13 of 90
            Pseudo Genes (multiple problems)  :: 13 of 90
            Pseudo Genes (short protein)      :: 1 of 90
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4551811
                     /organism="Escherichia fergusonii"
                     /mol_type="genomic DNA"
                     /strain="1.3LJC3-2"
                     /isolation_source="Chicken meat"
                     /host="Poultry"
                     /db_xref="taxon:564"
                     /geo_loc_name="China: Chengdu"
                     /collection_date="2023-01-03"
WGS         JAVLOS010000001-JAVLOS010000043
WGS_SCAFLD  NZ_JAVLOS010000001-NZ_JAVLOS010000043
//
LOCUS       NZ_WXRE01000000      2839738 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain BIOML-A32, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WXRE00000000
VERSION     NZ_WXRE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945478
            Assembly: GCF_009894085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2839738)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2839738)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WXRE00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_WXRE00000000.  This version of the project
            (01) has the accession number NZ_WXRE01000000, and consists of
            sequences WXRE01000001-WXRE01000034.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 726.437x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009894085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:58:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,611
            CDSs (total)                      :: 2,557
            Genes (coding)                    :: 2,520
            CDSs (with protein)               :: 2,520
            Genes (RNA)                       :: 54
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 19 of 37
            Pseudo Genes (incomplete)         :: 23 of 37
            Pseudo Genes (internal stop)      :: 8 of 37
            Pseudo Genes (multiple problems)  :: 10 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2839738
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A32"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1354"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-15"
WGS         WXRE01000001-WXRE01000034
WGS_SCAFLD  NZ_WXRE01000001-NZ_WXRE01000034
//
LOCUS       NZ_WWQY01000000      3023751 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain BIOML-A15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WWQY00000000
VERSION     NZ_WWQY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945376
            Assembly: GCF_009875075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3023751)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 3023751)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WWQY00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_WWQY00000000.  This version of the project
            (01) has the accession number NZ_WWQY01000000, and consists of
            sequences WWQY01000001-WWQY01000127.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 335.026x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009875075.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:59:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,989
            CDSs (total)                      :: 2,915
            Genes (coding)                    :: 2,736
            CDSs (with protein)               :: 2,736
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 22 of 179
            Pseudo Genes (incomplete)         :: 151 of 179
            Pseudo Genes (internal stop)      :: 39 of 179
            Pseudo Genes (multiple problems)  :: 31 of 179
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023751
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A15"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:53345"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WWQY01000001-WWQY01000127
WGS_SCAFLD  NZ_WWQY01000001-NZ_WWQY01000127
//
LOCUS       NZ_WXTP01000000      3029115 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain BIOML-A51, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WXTP00000000
VERSION     NZ_WXTP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945412
            Assembly: GCF_009892125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3029115)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 3029115)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WXTP00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_WXTP00000000.  This version of the project
            (01) has the accession number NZ_WXTP01000000, and consists of
            sequences WXTP01000001-WXTP01000101.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 151.71x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009892125.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:57:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,992
            CDSs (total)                      :: 2,917
            Genes (coding)                    :: 2,755
            CDSs (with protein)               :: 2,755
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 1 (5S, 16S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 23 of 162
            Pseudo Genes (incomplete)         :: 135 of 162
            Pseudo Genes (internal stop)      :: 39 of 162
            Pseudo Genes (multiple problems)  :: 33 of 162
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029115
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A51"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:53345"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WXTP01000001-WXTP01000101
WGS_SCAFLD  NZ_WXTP01000001-NZ_WXTP01000101
//
LOCUS       NZ_WWQO01000000      3014108 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain BIOML-A25, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WWQO00000000
VERSION     NZ_WWQO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945386
            Assembly: GCF_009874045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3014108)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 3014108)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WWQO00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_WWQO00000000.  This version of the project
            (01) has the accession number NZ_WWQO01000000, and consists of
            sequences WWQO01000001-WWQO01000106.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 254.781x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009874045.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:54:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,967
            CDSs (total)                      :: 2,893
            Genes (coding)                    :: 2,731
            CDSs (with protein)               :: 2,731
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 22 of 162
            Pseudo Genes (incomplete)         :: 134 of 162
            Pseudo Genes (internal stop)      :: 39 of 162
            Pseudo Genes (multiple problems)  :: 31 of 162
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014108
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A25"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:53345"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WWQO01000001-WWQO01000106
WGS_SCAFLD  NZ_WWQO01000001-NZ_WWQO01000106
//
LOCUS       NZ_WWQA01000000      3046395 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain BIOML-A42, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WWQA00000000
VERSION     NZ_WWQA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945403
            Assembly: GCF_009874785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3046395)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 3046395)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WWQA00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_WWQA00000000.  This version of the project
            (01) has the accession number NZ_WWQA01000000, and consists of
            sequences WWQA01000001-WWQA01000100.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 395.026x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009874785.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:55:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,022
            CDSs (total)                      :: 2,949
            Genes (coding)                    :: 2,789
            CDSs (with protein)               :: 2,789
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 24 of 160
            Pseudo Genes (incomplete)         :: 133 of 160
            Pseudo Genes (internal stop)      :: 39 of 160
            Pseudo Genes (multiple problems)  :: 34 of 160
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046395
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A42"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:53345"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WWQA01000001-WWQA01000100
WGS_SCAFLD  NZ_WWQA01000001-NZ_WWQA01000100
//
LOCUS       NZ_JBREBO010000000   4684626 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Franconibacter pulveris strain SD173, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBREBO000000000
VERSION     NZ_JBREBO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50480397
            Assembly: GCF_056780215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Franconibacter pulveris
  ORGANISM  Franconibacter pulveris
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Franconibacter.
REFERENCE   1  (bases 1 to 4684626)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Tso,F., Ford,N.E.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4684626)
  AUTHORS   Garrell,A.-K., Swift,J.F., Pal,G., Pestalozzi,C., Castrillo,G.,
            Schlaeppi,K., Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBREBO000000000.1.
            The Franconibacter pulveris whole genome shotgun (WGS) project has
            the project accession NZ_JBREBO000000000.  This version of the
            project (01) has the accession number NZ_JBREBO010000000, and
            consists of sequence JBREBO010000001.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 102x
            Sequencing Technology  :: Oxford Nanopore Technology
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:23:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,417
            CDSs (total)                      :: 4,298
            Genes (coding)                    :: 4,250
            CDSs (with protein)               :: 4,250
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 16 of 48
            Pseudo Genes (incomplete)         :: 37 of 48
            Pseudo Genes (internal stop)      :: 8 of 48
            Pseudo Genes (multiple problems)  :: 10 of 48
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4684626
                     /organism="Franconibacter pulveris"
                     /mol_type="genomic DNA"
                     /strain="SD173"
                     /db_xref="taxon:435910"
                     /geo_loc_name="Cape Verde"
                     /lat_lon="15.028 N 23.563 W"
WGS         JBREBO010000001
WGS_SCAFLD  NZ_CM165555
//
LOCUS       NZ_WWRA01000000      3036012 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain BIOML-A13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WWRA00000000
VERSION     NZ_WWRA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945374
            Assembly: GCF_009875115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3036012)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 3036012)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WWRA00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_WWRA00000000.  This version of the project
            (01) has the accession number NZ_WWRA01000000, and consists of
            sequences WWRA01000001-WWRA01000138.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 477.1x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009875115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:00:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,980
            CDSs (total)                      :: 2,928
            Genes (coding)                    :: 2,750
            CDSs (with protein)               :: 2,750
            Genes (RNA)                       :: 52
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 178
            CDSs (without protein)            :: 178
            Pseudo Genes (ambiguous residues) :: 0 of 178
            Pseudo Genes (frameshifted)       :: 23 of 178
            Pseudo Genes (incomplete)         :: 150 of 178
            Pseudo Genes (internal stop)      :: 40 of 178
            Pseudo Genes (multiple problems)  :: 34 of 178
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3036012
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A13"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:53345"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WWRA01000001-WWRA01000138
WGS_SCAFLD  NZ_WWRA01000001-NZ_WWRA01000138
//
LOCUS       NZ_WXTT01000000      3042602 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus durans strain BIOML-A46, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WXTT00000000
VERSION     NZ_WXTT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11945407
            Assembly: GCF_009892205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus durans
  ORGANISM  Enterococcus durans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3042602)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 3042602)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WXTT00000000.1.
            The Enterococcus durans whole genome shotgun (WGS) project has the
            project accession NZ_WXTT00000000.  This version of the project
            (01) has the accession number NZ_WXTT01000000, and consists of
            sequences WXTT01000001-WXTT01000101.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 229.687x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009892205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:00:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,010
            CDSs (total)                      :: 2,942
            Genes (coding)                    :: 2,785
            CDSs (with protein)               :: 2,785
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 157
            CDSs (without protein)            :: 157
            Pseudo Genes (ambiguous residues) :: 0 of 157
            Pseudo Genes (frameshifted)       :: 23 of 157
            Pseudo Genes (incomplete)         :: 131 of 157
            Pseudo Genes (internal stop)      :: 41 of 157
            Pseudo Genes (multiple problems)  :: 35 of 157
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042602
                     /organism="Enterococcus durans"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A46"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:53345"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-01-11"
WGS         WXTT01000001-WXTT01000101
WGS_SCAFLD  NZ_WXTT01000001-NZ_WXTT01000101
//
LOCUS       NZ_JABAFV010000000   2453873 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain WCA-380-WT-3C, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABAFV000000000
VERSION     NZ_JABAFV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14558259
            Assembly: GCF_012843815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2453873)
  AUTHORS   Hitch,T.C.A., Wylensek,D. and Clavel,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2020) Institute of Medical Microbiology,
            UniKlinik RWTH Aachen, Pauwelsstrasse, Aachen 52074, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABAFV000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JABAFV000000000.  This version of the project
            (01) has the accession number NZ_JABAFV010000000, and consists of
            sequences JABAFV010000001-JABAFV010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 580x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012843815.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:02:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,483
            CDSs (total)                      :: 2,418
            Genes (coding)                    :: 2,346
            CDSs (with protein)               :: 2,346
            Genes (RNA)                       :: 65
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 27 of 72
            Pseudo Genes (incomplete)         :: 39 of 72
            Pseudo Genes (internal stop)      :: 22 of 72
            Pseudo Genes (multiple problems)  :: 13 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2453873
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="WCA-380-WT-3C"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="Germany"
                     /collection_date="2018-03-03"
WGS         JABAFV010000001-JABAFV010000060
WGS_SCAFLD  NZ_JABAFV010000001-NZ_JABAFV010000060
//
LOCUS       NZ_JACJLG010000000   2100522 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain An483, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACJLG000000000
VERSION     NZ_JACJLG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14913567
            Assembly: GCF_016902075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2100522)
  AUTHORS   Juricova,H., Matiasovicova,J., Kubasova,T., Cejkova,D. and
            Rychlik,I.
  TITLE     The distribution of antibiotic resistance genes in chicken gut
            microbiota commensals
  JOURNAL   Sci Rep 11 (1), 3290 (2021)
   PUBMED   33558560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100522)
  AUTHORS   Cejkova,D., Kubasova,T., Jahodarova,E. and Rychlik,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-AUG-2020) Department of Microbiology, Veterinary
            Research Institute, Hudcova 70, Brno 62100, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACJLG000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JACJLG000000000.  This version of the project
            (01) has the accession number NZ_JACJLG010000000, and consists of
            sequences JACJLG010000001-JACJLG010000154.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA_UD v. idba-v1.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 85x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016902075.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:21:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,188
            CDSs (total)                      :: 2,098
            Genes (coding)                    :: 2,009
            CDSs (with protein)               :: 2,009
            Genes (RNA)                       :: 90
            rRNAs                             :: 10, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 24 of 89
            Pseudo Genes (incomplete)         :: 67 of 89
            Pseudo Genes (internal stop)      :: 15 of 89
            Pseudo Genes (multiple problems)  :: 15 of 89
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100522
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="An483"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /collection_date="2017"
WGS         JACJLG010000001-JACJLG010000154
WGS_SCAFLD  NZ_JACJLG010000001-NZ_JACJLG010000154
//
LOCUS       NZ_JAAEUS010000000   3847736 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Erwinia amylovora strain EaG5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAEUS000000000
VERSION     NZ_JAAEUS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13919251
            Assembly: GCF_012367055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Erwinia amylovora
  ORGANISM  Erwinia amylovora
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Erwinia.
REFERENCE   1  (bases 1 to 3847736)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Comparative genomic analysis of Erwinia amylovora reveals novel
            insights in phylogenetic arrangement, plasmid diversity, and
            streptomycin resistance
  JOURNAL   Genomics 112 (5), 3762-3772 (2020)
   PUBMED   32259573
REFERENCE   2  (bases 1 to 3847736)
  AUTHORS   Parcey,M., Gayder,S., Morley-Senkler,V., Bakkeren,G.,
            Urbez-Torres,J.R., Ali,S., Castle,A.J. and Svircev,A.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JAN-2020) Science and Technology, Agriculture and
            Agri-Food Canada, 4902 Victoria Ave N, Vineland Station, Ontario
            L0R2E0, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAEUS000000000.1.
            The Erwinia amylovora whole genome shotgun (WGS) project has the
            project accession NZ_JAAEUS000000000.  This version of the project
            (01) has the accession number NZ_JAAEUS010000000, and consists of
            sequences JAAEUS010000001-JAAEUS010000093.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. May-2017
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012367055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:30:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,546
            CDSs (total)                      :: 3,501
            Genes (coding)                    :: 3,392
            CDSs (with protein)               :: 3,392
            Genes (RNA)                       :: 45
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 53 of 109
            Pseudo Genes (incomplete)         :: 65 of 109
            Pseudo Genes (internal stop)      :: 28 of 109
            Pseudo Genes (multiple problems)  :: 28 of 109
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3847736
                     /organism="Erwinia amylovora"
                     /mol_type="genomic DNA"
                     /strain="EaG5"
                     /host="Pyrus communis"
                     /db_xref="taxon:552"
                     /geo_loc_name="Canada: Unknown (Presumed, Ontario)"
                     /collection_date="1972"
WGS         JAAEUS010000001-JAAEUS010000093
WGS_SCAFLD  NZ_JAAEUS010000001-NZ_JAAEUS010000093
//
LOCUS       NZ_VOED01000000      2929244 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus hirae strain MP1-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VOED00000000
VERSION     NZ_VOED00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12384629
            Assembly: GCF_017356565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus hirae
  ORGANISM  Enterococcus hirae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2929244)
  AUTHORS   Prichula,J., Frazzon,A.P.G., Seixas,A. and Gilmore,M.S.
  TITLE     Phylogenetic and comparative genomic of wild marine
            animal-associated enterococci from the southern coast of Brazil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2929244)
  AUTHORS   Prichula,J., Frazzon,A.P.G., Seixas,A. and Gilmore,M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2019) Basic Health Sciences Department, Federal
            University of Health Sciences of Porto Alegre, 245 Sarmento Leite
            St., Porto Alegre, RS 90050-170, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VOED00000000.1.
            The Enterococcus hirae whole genome shotgun (WGS) project has the
            project accession NZ_VOED00000000.  This version of the project
            (01) has the accession number NZ_VOED01000000, and consists of
            sequences VOED01000001-VOED01000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Ana Paula Guedes Frazzon,
            500 Sarmento Leite St, room 158, 90050-170, Porto Alegre, RS,
            Brazil.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8.0.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 298.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017356565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,700
            CDSs (total)                      :: 2,637
            Genes (coding)                    :: 2,569
            CDSs (with protein)               :: 2,569
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1, 3 (5S, 16S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 33 of 68
            Pseudo Genes (incomplete)         :: 34 of 68
            Pseudo Genes (internal stop)      :: 19 of 68
            Pseudo Genes (multiple problems)  :: 14 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2929244
                     /organism="Enterococcus hirae"
                     /mol_type="genomic DNA"
                     /strain="MP1-1"
                     /isolation_source="feces"
                     /host="Spheniscus magellanicus (Magellanic penguin)"
                     /db_xref="taxon:1354"
                     /geo_loc_name="Brazil: Cidreira"
                     /collection_date="2012-11-02"
                     /collected_by="Janira Prichula"
WGS         VOED01000001-VOED01000011
WGS_SCAFLD  NZ_VOED01000001-NZ_VOED01000011
//
LOCUS       NZ_JAIFOB010000000   2659937 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain EF214, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIFOB000000000
VERSION     NZ_JAIFOB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20247416
            Assembly: GCF_019662205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2659937)
  AUTHORS   Shridhar,P.B., Amachawadi,R.G., Tokach,M., Patel,I., Gangiredla,J.,
            Mammel,M. and Nagaraja,T.G.
  TITLE     Whole genome sequence analyses-based assessment of virulence
            potential and antimicrobial susceptibilities and resistance of
            Enterococcus faecium strains isolated from commercial swine and
            cattle probiotic products
  JOURNAL   J Anim Sci 100 (3) (2022)
   PUBMED   35150575
REFERENCE   2  (bases 1 to 2659937)
  AUTHORS   Shridhar,P.B., Amachawadi,R.G., Tokach,M., Patel,I., Gangiredla,J.
            and Nagaraja,T.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2021) Clinical Sciences, Kansas State University,
            1800 Denison Avenue, Q221 Mosier Hall, Department of Clinical
            Sciences, College of Veterinary Medici, Manhattan, KS 66506, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIFOB000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIFOB000000000.  This version of the project
            (01) has the accession number NZ_JAIFOB010000000, and consists of
            sequences JAIFOB010000001-JAIFOB010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUL-2021
            Assembly Method        :: CLC NGS Cell v. 12.03
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019662205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:48:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,629
            CDSs (total)                      :: 2,571
            Genes (coding)                    :: 2,455
            CDSs (with protein)               :: 2,455
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 39 of 116
            Pseudo Genes (incomplete)         :: 48 of 116
            Pseudo Genes (internal stop)      :: 36 of 116
            Pseudo Genes (multiple problems)  :: 7 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659937
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="EF214"
                     /isolation_source="Probiotic"
                     /db_xref="taxon:357441"
                     /geo_loc_name="USA: Manhattan, KS"
                     /lat_lon="39.1836 N 96.5717 W"
                     /collection_date="2016"
                     /collected_by="KSU"
WGS         JAIFOB010000001-JAIFOB010000080
WGS_SCAFLD  NZ_JAIFOB010000001-NZ_JAIFOB010000080
//
LOCUS       NZ_JAKYLF010000000   2241781 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD285EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYLF000000000
VERSION     NZ_JAKYLF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060122
            Assembly: GCF_022807015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2241781)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2241781)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYLF000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYLF000000000.  This version of the project
            (01) has the accession number NZ_JAKYLF010000000, and consists of
            sequences JAKYLF010000001-JAKYLF010000124.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 52x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:07:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,306
            CDSs (total)                      :: 2,228
            Genes (coding)                    :: 2,144
            CDSs (with protein)               :: 2,144
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 6, 4 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 15 of 84
            Pseudo Genes (incomplete)         :: 60 of 84
            Pseudo Genes (internal stop)      :: 19 of 84
            Pseudo Genes (multiple problems)  :: 10 of 84
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241781
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD285EN"
                     /isolation_source="Spine"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYLF010000001-JAKYLF010000124
WGS_SCAFLD  NZ_JAKYLF010000001-NZ_JAKYLF010000124
//
LOCUS       NZ_JAKYKK010000000   2234743 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD62EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKK000000000
VERSION     NZ_JAKYKK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060101
            Assembly: GCF_022807415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2234743)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2234743)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKK000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKK000000000.  This version of the project
            (01) has the accession number NZ_JAKYKK010000000, and consists of
            sequences JAKYKK010000001-JAKYKK010000187.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 84x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:05:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,302
            CDSs (total)                      :: 2,225
            Genes (coding)                    :: 2,143
            CDSs (with protein)               :: 2,143
            Genes (RNA)                       :: 77
            rRNAs                             :: 5, 7, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 7, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 15 of 82
            Pseudo Genes (incomplete)         :: 61 of 82
            Pseudo Genes (internal stop)      :: 14 of 82
            Pseudo Genes (multiple problems)  :: 8 of 82
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234743
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD62EN"
                     /isolation_source="Cecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKK010000001-JAKYKK010000187
WGS_SCAFLD  NZ_JAKYKK010000001-NZ_JAKYKK010000187
//
LOCUS       NZ_JAKYKU010000000   2020151 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD158EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKU000000000
VERSION     NZ_JAKYKU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060111
            Assembly: GCF_022807215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2020151)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2020151)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKU000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKU000000000.  This version of the project
            (01) has the accession number NZ_JAKYKU010000000, and consists of
            sequences JAKYKU010000001-JAKYKU010000426.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 84x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:06:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,147
            CDSs (total)                      :: 2,073
            Genes (coding)                    :: 1,973
            CDSs (with protein)               :: 1,973
            Genes (RNA)                       :: 74
            rRNAs                             :: 6, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 100
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 20 of 100
            Pseudo Genes (incomplete)         :: 77 of 100
            Pseudo Genes (internal stop)      :: 10 of 100
            Pseudo Genes (multiple problems)  :: 7 of 100
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020151
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD158EN"
                     /isolation_source="Spine"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKU010000001-JAKYKU010000426
WGS_SCAFLD  NZ_JAKYKU010000001-NZ_JAKYKU010000426
//
LOCUS       NZ_JAKYKV010000000   2036095 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD161EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKV000000000
VERSION     NZ_JAKYKV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060112
            Assembly: GCF_022807195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2036095)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2036095)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKV000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKV000000000.  This version of the project
            (01) has the accession number NZ_JAKYKV010000000, and consists of
            sequences JAKYKV010000001-JAKYKV010000298.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 56x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:10:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,134
            CDSs (total)                      :: 2,061
            Genes (coding)                    :: 1,964
            CDSs (with protein)               :: 1,964
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 21 of 97
            Pseudo Genes (incomplete)         :: 72 of 97
            Pseudo Genes (internal stop)      :: 11 of 97
            Pseudo Genes (multiple problems)  :: 7 of 97
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036095
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD161EN"
                     /isolation_source="Spine"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKV010000001-JAKYKV010000298
WGS_SCAFLD  NZ_JAKYKV010000001-NZ_JAKYKV010000298
//
LOCUS       NZ_JAKYKZ010000000   2209031 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD259EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKZ000000000
VERSION     NZ_JAKYKZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060116
            Assembly: GCF_022807095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2209031)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2209031)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKZ000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKZ000000000.  This version of the project
            (01) has the accession number NZ_JAKYKZ010000000, and consists of
            sequences JAKYKZ010000001-JAKYKZ010000440.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 64x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807095.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:10:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,346
            CDSs (total)                      :: 2,271
            Genes (coding)                    :: 2,159
            CDSs (with protein)               :: 2,159
            Genes (RNA)                       :: 75
            rRNAs                             :: 6, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 5, 2 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 16 of 112
            Pseudo Genes (incomplete)         :: 85 of 112
            Pseudo Genes (internal stop)      :: 18 of 112
            Pseudo Genes (multiple problems)  :: 7 of 112
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209031
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD259EN"
                     /isolation_source="Cecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKZ010000001-JAKYKZ010000440
WGS_SCAFLD  NZ_JAKYKZ010000001-NZ_JAKYKZ010000440
//
LOCUS       NZ_JAKYKH010000000   2232766 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD26EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKH000000000
VERSION     NZ_JAKYKH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060098
            Assembly: GCF_022807435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2232766)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2232766)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKH000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKH000000000.  This version of the project
            (01) has the accession number NZ_JAKYKH010000000, and consists of
            sequences JAKYKH010000001-JAKYKH010000289.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:12:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,358
            CDSs (total)                      :: 2,285
            Genes (coding)                    :: 2,194
            CDSs (with protein)               :: 2,194
            Genes (RNA)                       :: 73
            rRNAs                             :: 5, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 6, 4 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 18 of 91
            Pseudo Genes (incomplete)         :: 69 of 91
            Pseudo Genes (internal stop)      :: 13 of 91
            Pseudo Genes (multiple problems)  :: 9 of 91
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232766
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD26EN"
                     /isolation_source="Cecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKH010000001-JAKYKH010000289
WGS_SCAFLD  NZ_JAKYKH010000001-NZ_JAKYKH010000289
//
LOCUS       NZ_JAKYKX010000000   2421783 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD192EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKX000000000
VERSION     NZ_JAKYKX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060114
            Assembly: GCF_022807155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2421783)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2421783)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKX000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKX000000000.  This version of the project
            (01) has the accession number NZ_JAKYKX010000000, and consists of
            sequences JAKYKX010000001-JAKYKX010000172.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Assembly Name          :: CHD192EN
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:12:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,486
            CDSs (total)                      :: 2,408
            Genes (coding)                    :: 2,309
            CDSs (with protein)               :: 2,309
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 6, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 6, 3 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 12 of 99
            Pseudo Genes (incomplete)         :: 76 of 99
            Pseudo Genes (internal stop)      :: 20 of 99
            Pseudo Genes (multiple problems)  :: 8 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421783
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD192EN"
                     /isolation_source="Cecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKX010000001-JAKYKX010000172
WGS_SCAFLD  NZ_JAKYKX010000001-NZ_JAKYKX010000172
//
LOCUS       NZ_JAKYKL010000000   2111578 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD78EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKL000000000
VERSION     NZ_JAKYKL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060102
            Assembly: GCF_022807395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2111578)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2111578)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKL000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKL000000000.  This version of the project
            (01) has the accession number NZ_JAKYKL010000000, and consists of
            sequences JAKYKL010000001-JAKYKL010000706.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:15:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,287
            CDSs (total)                      :: 2,221
            Genes (coding)                    :: 2,092
            CDSs (with protein)               :: 2,092
            Genes (RNA)                       :: 66
            rRNAs                             :: 5, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 17 of 129
            Pseudo Genes (incomplete)         :: 105 of 129
            Pseudo Genes (internal stop)      :: 18 of 129
            Pseudo Genes (multiple problems)  :: 11 of 129
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111578
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD78EN"
                     /isolation_source="Cecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKL010000001-JAKYKL010000706
WGS_SCAFLD  NZ_JAKYKL010000001-NZ_JAKYKL010000706
//
LOCUS       NZ_JAKYLA010000000   2411456 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD261EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYLA000000000
VERSION     NZ_JAKYLA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060117
            Assembly: GCF_022807115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2411456)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2411456)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYLA000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYLA000000000.  This version of the project
            (01) has the accession number NZ_JAKYLA010000000, and consists of
            sequences JAKYLA010000001-JAKYLA010000201.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 68x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:13:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,407
            Genes (coding)                    :: 2,314
            CDSs (with protein)               :: 2,314
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 5, 3 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 13 of 93
            Pseudo Genes (incomplete)         :: 71 of 93
            Pseudo Genes (internal stop)      :: 20 of 93
            Pseudo Genes (multiple problems)  :: 10 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2411456
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD261EN"
                     /isolation_source="Spine"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYLA010000001-JAKYLA010000201
WGS_SCAFLD  NZ_JAKYLA010000001-NZ_JAKYLA010000201
//
LOCUS       NZ_JAKYKI010000000   2179308 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD37EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYKI000000000
VERSION     NZ_JAKYKI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060099
            Assembly: GCF_022807455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2179308)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2179308)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYKI000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYKI000000000.  This version of the project
            (01) has the accession number NZ_JAKYKI010000000, and consists of
            sequences JAKYKI010000001-JAKYKI010000397.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 42x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:12:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,294
            CDSs (total)                      :: 2,218
            Genes (coding)                    :: 2,107
            CDSs (with protein)               :: 2,107
            Genes (RNA)                       :: 76
            rRNAs                             :: 6, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 1, 6, 4 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 13 of 111
            Pseudo Genes (incomplete)         :: 88 of 111
            Pseudo Genes (internal stop)      :: 17 of 111
            Pseudo Genes (multiple problems)  :: 7 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179308
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD37EN"
                     /isolation_source="Cecum"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYKI010000001-JAKYKI010000397
WGS_SCAFLD  NZ_JAKYKI010000001-NZ_JAKYKI010000397
//
LOCUS       NZ_JAKYLG010000000   2192894 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD288EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYLG000000000
VERSION     NZ_JAKYLG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060123
            Assembly: GCF_022806975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2192894)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2192894)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYLG000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYLG000000000.  This version of the project
            (01) has the accession number NZ_JAKYLG010000000, and consists of
            sequences JAKYLG010000001-JAKYLG010000155.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022806975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:14:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,266
            CDSs (total)                      :: 2,189
            Genes (coding)                    :: 2,106
            CDSs (with protein)               :: 2,106
            Genes (RNA)                       :: 77
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 5, 4 (16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 17 of 83
            Pseudo Genes (incomplete)         :: 59 of 83
            Pseudo Genes (internal stop)      :: 17 of 83
            Pseudo Genes (multiple problems)  :: 9 of 83
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192894
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD288EN"
                     /isolation_source="Spine"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYLG010000001-JAKYLG010000155
WGS_SCAFLD  NZ_JAKYLG010000001-NZ_JAKYLG010000155
//
LOCUS       NZ_JAKYLC010000000   2313679 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus cecorum strain CHD265EN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKYLC000000000
VERSION     NZ_JAKYLC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18060119
            Assembly: GCF_022807035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus cecorum
  ORGANISM  Enterococcus cecorum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2313679)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Comparative genomic analysis of Enterococccus cecorum from
            enterococcal spondylitis lesions and broiler ceca
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2313679)
  AUTHORS   Smith,A.H. and Geier,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2021) Arm and Hammer Animal and Food Production,
            Church and Dwight, W227 N752 Westmound Dr., Waukesha, WI 53186, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKYLC000000000.1.
            The Enterococcus cecorum whole genome shotgun (WGS) project has the
            project accession NZ_JAKYLC000000000.  This version of the project
            (01) has the accession number NZ_JAKYLC010000000, and consists of
            sequences JAKYLC010000001-JAKYLC010000561.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-MAY-2020
            Assembly Method        :: SPAdes v. 3.13.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022807035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:14:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,478
            CDSs (total)                      :: 2,402
            Genes (coding)                    :: 2,271
            CDSs (with protein)               :: 2,271
            Genes (RNA)                       :: 76
            rRNAs                             :: 5, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 5, 3 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 12 of 131
            Pseudo Genes (incomplete)         :: 109 of 131
            Pseudo Genes (internal stop)      :: 19 of 131
            Pseudo Genes (multiple problems)  :: 8 of 131
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313679
                     /organism="Enterococcus cecorum"
                     /mol_type="genomic DNA"
                     /strain="CHD265EN"
                     /isolation_source="Spine"
                     /host="Gallus gallus"
                     /db_xref="taxon:44008"
                     /geo_loc_name="USA"
                     /collection_date="2016"
                     /collected_by="AHANFP"
WGS         JAKYLC010000001-JAKYLC010000561
WGS_SCAFLD  NZ_JAKYLC010000001-NZ_JAKYLC010000561
//
LOCUS       NZ_JAIWOW010000000   3317533 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus gallinarum strain FS4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIWOW000000000
VERSION     NZ_JAIWOW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21240835
            Assembly: GCF_022406895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus gallinarum
  ORGANISM  Enterococcus gallinarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 3317533)
  AUTHORS   Coccitto,S.N., Cinthi,M., Fioriti,S., Morroni,G., Simoni,S.,
            Vignaroli,C., Garofalo,C., Mingoia,M., Brenciani,A. and
            Giovanetti,E.
  TITLE     Linezolid-resistant Enterococcus gallinarum isolate of swine origin
            carrying cfr, optrA and poxtA genes
  JOURNAL   J Antimicrob Chemother 77 (2), 331-337 (2022)
   PUBMED   35107153
REFERENCE   2  (bases 1 to 3317533)
  AUTHORS   Morroni,G., Brenciani,A., Fioriti,S., Coccitto,S.N. and Cinthi,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2021) Dip Scienze Biomediche e Sanita Pubblica,
            Universita Politecnica delle Marche, via Tronto 10/A, Ancona 60126,
            Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIWOW000000000.1.
            The Enterococcus gallinarum whole genome shotgun (WGS) project has
            the project accession NZ_JAIWOW000000000.  This version of the
            project (01) has the accession number NZ_JAIWOW010000000, and
            consists of sequences JAIWOW010000001-JAIWOW010000012.
            Bacteria and source DNA available from Microbiology Lab,
            DSBSP-DISVA, Polytechnic University of Marche, via Tronto 10/A,
            60126, Ancona, Italy.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2021
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60.0x
            Sequencing Technology  :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022406895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:27:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,272
            CDSs (total)                      :: 3,191
            Genes (coding)                    :: 3,093
            CDSs (with protein)               :: 3,093
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 26 of 98
            Pseudo Genes (incomplete)         :: 58 of 98
            Pseudo Genes (internal stop)      :: 21 of 98
            Pseudo Genes (multiple problems)  :: 6 of 98
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317533
                     /organism="Enterococcus gallinarum"
                     /mol_type="genomic DNA"
                     /strain="FS4"
                     /isolation_source="fecal swab"
                     /host="swine"
                     /db_xref="taxon:1353"
                     /geo_loc_name="Italy"
                     /collection_date="2019"
WGS         JAIWOW010000001-JAIWOW010000012
WGS_SCAFLD  NZ_JAIWOW010000001-NZ_JAIWOW010000012
//
LOCUS       NZ_JAIZYE010000000   2676765 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain 20-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZYE000000000
VERSION     NZ_JAIZYE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840384
            Assembly: GCF_029599645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2676765)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2676765)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZYE000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZYE000000000.  This version of the project
            (01) has the accession number NZ_JAIZYE010000000, and consists of
            sequences JAIZYE010000001-JAIZYE010000097.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 521x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029599645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:41:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,636
            CDSs (total)                      :: 2,581
            Genes (coding)                    :: 2,464
            CDSs (with protein)               :: 2,464
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 51 of 117
            Pseudo Genes (incomplete)         :: 46 of 117
            Pseudo Genes (internal stop)      :: 30 of 117
            Pseudo Genes (multiple problems)  :: 10 of 117
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676765
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="20-2"
                     /isolation_source="Rice wine Koji"
                     /db_xref="taxon:357441"
                     /geo_loc_name="China: Hubei"
WGS         JAIZYE010000001-JAIZYE010000097
WGS_SCAFLD  NZ_JAIZYE010000001-NZ_JAIZYE010000097
//
LOCUS       NZ_JAIZXG010000000   2692084 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain IMJ12-4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZXG000000000
VERSION     NZ_JAIZXG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840360
            Assembly: GCF_029600205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2692084)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2692084)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZXG000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZXG000000000.  This version of the project
            (01) has the accession number NZ_JAIZXG010000000, and consists of
            sequences JAIZXG010000001-JAIZXG010000117.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 513x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029600205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:47:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,653
            CDSs (total)                      :: 2,600
            Genes (coding)                    :: 2,493
            CDSs (with protein)               :: 2,493
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 41 of 107
            Pseudo Genes (incomplete)         :: 50 of 107
            Pseudo Genes (internal stop)      :: 28 of 107
            Pseudo Genes (multiple problems)  :: 11 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692084
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="IMJ12-4"
                     /isolation_source="Rice wine Koji"
                     /db_xref="taxon:357441"
                     /geo_loc_name="China: Hubei"
WGS         JAIZXG010000001-JAIZXG010000117
WGS_SCAFLD  NZ_JAIZXG010000001-NZ_JAIZXG010000117
//
LOCUS       NZ_JAIZYK010000000   2691641 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain BL25-6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZYK000000000
VERSION     NZ_JAIZYK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840390
            Assembly: GCF_029599495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2691641)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2691641)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZYK000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZYK000000000.  This version of the project
            (01) has the accession number NZ_JAIZYK010000000, and consists of
            sequences JAIZYK010000001-JAIZYK010000111.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 605x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029599495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:43:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,649
            CDSs (total)                      :: 2,593
            Genes (coding)                    :: 2,478
            CDSs (with protein)               :: 2,478
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 49 of 115
            Pseudo Genes (incomplete)         :: 47 of 115
            Pseudo Genes (internal stop)      :: 33 of 115
            Pseudo Genes (multiple problems)  :: 14 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691641
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="BL25-6"
                     /isolation_source="dairy product"
                     /db_xref="taxon:357441"
                     /geo_loc_name="Russia: Buryats"
WGS         JAIZYK010000001-JAIZYK010000111
WGS_SCAFLD  NZ_JAIZYK010000001-NZ_JAIZYK010000111
//
LOCUS       NZ_JAIZXZ010000000   2747112 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain 16-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZXZ000000000
VERSION     NZ_JAIZXZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840379
            Assembly: GCF_029599805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2747112)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2747112)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZXZ000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZXZ000000000.  This version of the project
            (01) has the accession number NZ_JAIZXZ010000000, and consists of
            sequences JAIZXZ010000001-JAIZXZ010000076.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 486x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029599805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:48:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,681
            CDSs (total)                      :: 2,626
            Genes (coding)                    :: 2,506
            CDSs (with protein)               :: 2,506
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 47 of 120
            Pseudo Genes (incomplete)         :: 54 of 120
            Pseudo Genes (internal stop)      :: 34 of 120
            Pseudo Genes (multiple problems)  :: 15 of 120
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747112
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="16-3"
                     /isolation_source="Rice wine Koji"
                     /db_xref="taxon:357441"
                     /geo_loc_name="China: Hubei"
WGS         JAIZXZ010000001-JAIZXZ010000076
WGS_SCAFLD  NZ_JAIZXZ010000001-NZ_JAIZXZ010000076
//
LOCUS       NZ_JAIZXI010000000   2766404 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain 13-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZXI000000000
VERSION     NZ_JAIZXI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840362
            Assembly: GCF_029600135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2766404)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2766404)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZXI000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZXI000000000.  This version of the project
            (01) has the accession number NZ_JAIZXI010000000, and consists of
            sequences JAIZXI010000001-JAIZXI010000091.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 511x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029600135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:49:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,749
            CDSs (total)                      :: 2,694
            Genes (coding)                    :: 2,576
            CDSs (with protein)               :: 2,576
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 48 of 118
            Pseudo Genes (incomplete)         :: 61 of 118
            Pseudo Genes (internal stop)      :: 22 of 118
            Pseudo Genes (multiple problems)  :: 12 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766404
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="13-3"
                     /isolation_source="Rice wine Koji"
                     /db_xref="taxon:357441"
                     /geo_loc_name="China: Hubei"
WGS         JAIZXI010000001-JAIZXI010000091
WGS_SCAFLD  NZ_JAIZXI010000001-NZ_JAIZXI010000091
//
LOCUS       NZ_JAIZXV010000000   2676511 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain 9-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZXV000000000
VERSION     NZ_JAIZXV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840375
            Assembly: GCF_029599855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2676511)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2676511)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZXV000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZXV000000000.  This version of the project
            (01) has the accession number NZ_JAIZXV010000000, and consists of
            sequences JAIZXV010000001-JAIZXV010000098.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 560x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029599855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:54:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,644
            CDSs (total)                      :: 2,587
            Genes (coding)                    :: 2,472
            CDSs (with protein)               :: 2,472
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 51 of 115
            Pseudo Genes (incomplete)         :: 45 of 115
            Pseudo Genes (internal stop)      :: 29 of 115
            Pseudo Genes (multiple problems)  :: 10 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676511
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="9-3"
                     /isolation_source="Rice wine Koji"
                     /db_xref="taxon:357441"
                     /geo_loc_name="China: Hubei"
WGS         JAIZXV010000001-JAIZXV010000098
WGS_SCAFLD  NZ_JAIZXV010000001-NZ_JAIZXV010000098
//
LOCUS       NZ_JAIZXJ010000000   2736933 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain 13-4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZXJ000000000
VERSION     NZ_JAIZXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840363
            Assembly: GCF_029600115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2736933)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2736933)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZXJ000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZXJ000000000.  This version of the project
            (01) has the accession number NZ_JAIZXJ010000000, and consists of
            sequences JAIZXJ010000001-JAIZXJ010000102.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 538x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029600115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,719
            CDSs (total)                      :: 2,662
            Genes (coding)                    :: 2,553
            CDSs (with protein)               :: 2,553
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 40 of 109
            Pseudo Genes (incomplete)         :: 44 of 109
            Pseudo Genes (internal stop)      :: 32 of 109
            Pseudo Genes (multiple problems)  :: 7 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2736933
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="13-4"
                     /isolation_source="Rice wine Koji"
                     /db_xref="taxon:357441"
                     /geo_loc_name="China: Hubei"
WGS         JAIZXJ010000001-JAIZXJ010000102
WGS_SCAFLD  NZ_JAIZXJ010000001-NZ_JAIZXJ010000102
//
LOCUS       NZ_JAIZWU010000000   2713052 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain XY10-9, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZWU000000000
VERSION     NZ_JAIZWU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840348
            Assembly: GCF_029600435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2713052)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2713052)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZWU000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZWU000000000.  This version of the project
            (01) has the accession number NZ_JAIZWU010000000, and consists of
            sequences JAIZWU010000001-JAIZWU010000108.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 496x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029600435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:46:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,699
            CDSs (total)                      :: 2,636
            Genes (coding)                    :: 2,519
            CDSs (with protein)               :: 2,519
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 42 of 117
            Pseudo Genes (incomplete)         :: 48 of 117
            Pseudo Genes (internal stop)      :: 36 of 117
            Pseudo Genes (multiple problems)  :: 9 of 117
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713052
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="XY10-9"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:357441"
                     /geo_loc_name="China: Hubei"
WGS         JAIZWU010000001-JAIZWU010000108
WGS_SCAFLD  NZ_JAIZWU010000001-NZ_JAIZWU010000108
//
LOCUS       NZ_JAIZYL010000000   2662641 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain BL2-16, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAIZYL000000000
VERSION     NZ_JAIZYL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21840391
            Assembly: GCF_029599475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2662641)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Enterococcus faecium genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2662641)
  AUTHORS   Zhong,Z. and Zhang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2021) Key Laboratory of Dairy Biotechnology and
            Engineering, Ministry of Education, Department of Food Science and
            Engineering, Inner Mongolia Agricultural University, Zhaowuda Road,
            No. 306, Hohhot 010018, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIZYL000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAIZYL000000000.  This version of the project
            (01) has the accession number NZ_JAIZYL010000000, and consists of
            sequences JAIZYL010000001-JAIZYL010000093.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 514x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029599475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:47:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,644
            CDSs (total)                      :: 2,588
            Genes (coding)                    :: 2,472
            CDSs (with protein)               :: 2,472
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 48 of 116
            Pseudo Genes (incomplete)         :: 40 of 116
            Pseudo Genes (internal stop)      :: 40 of 116
            Pseudo Genes (multiple problems)  :: 12 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662641
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="BL2-16"
                     /isolation_source="dairy product"
                     /db_xref="taxon:357441"
                     /geo_loc_name="Russia: Buryats"
WGS         JAIZYL010000001-JAIZYL010000093
WGS_SCAFLD  NZ_JAIZYL010000001-NZ_JAIZYL010000093
//
LOCUS       NZ_JBMOTT010000000   2858951 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Enterococcus lactis strain BT0169, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMOTT000000000
VERSION     NZ_JBMOTT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35878034
            Assembly: GCF_049319445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Enterococcus lactis
  ORGANISM  Enterococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Enterococcus.
REFERENCE   1  (bases 1 to 2858951)
  AUTHORS   Tadesse,B.T., Svetlicic,E., Zhao,S., Berhane,N., Jers,C., Solem,C.
            and Mijakovic,I.
  TITLE     Bad to the bone? - Genomic analysis of Enterococcus isolates from
            diverse environments reveals that most are safe and display
            potential as food fermentation microorganisms
  JOURNAL   Microbiol Res 283, 127702 (2024)
   PUBMED   38552381
REFERENCE   2  (bases 1 to 2858951)
  AUTHORS   Tadesse,B.T., Svetlicic,E., Zhao,S., Berhane,N., Jers,C., Solem,C.
            and Mijakovic,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2025) Microbial Biotechnology & Biorefining,
            Technical University of Denmark, Anker Engelunds Vej, Lyngby 2800,
            Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMOTT000000000.1.
            The Enterococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JBMOTT000000000.  This version of the project
            (01) has the accession number NZ_JBMOTT010000000, and consists of
            sequences JBMOTT010000001-JBMOTT010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. September 2022
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10x
            Sequencing Technology  :: Oxford Nanopore; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049319445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:13:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,806
            CDSs (total)                      :: 2,720
            Genes (coding)                    :: 2,609
            CDSs (with protein)               :: 2,609
            Genes (RNA)                       :: 86
            rRNAs                             :: 4, 6, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 48 of 111
            Pseudo Genes (incomplete)         :: 43 of 111
            Pseudo Genes (internal stop)      :: 37 of 111
            Pseudo Genes (multiple problems)  :: 15 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2858951
                     /organism="Enterococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="BT0169"
                     /isolation_source="Supermarket"
                     /db_xref="taxon:357441"
                     /geo_loc_name="Denmark"
                     /collection_date="2022-08"
WGS         JBMOTT010000001-JBMOTT010000044
WGS_SCAFLD  NZ_JBMOTT010000001-NZ_JBMOTT010000044
//
LOCUS       NZ_AZCQ01000000      2941717 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425
            strain DSM 20021, whole genome shotgun sequencing project.
ACCESSION   NZ_AZCQ00000000
VERSION     NZ_AZCQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02369512
            Assembly: GCF_001435405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425
  ORGANISM  Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lacticaseibacillus.
REFERENCE   1  (bases 1 to 2941717)
  AUTHORS   Sun,Z., Harris,H.M., McCann,A., Guo,C., Argimon,S., Zhang,W.,
            Yang,X., Jeffery,I.B., Cooney,J.C., Kagawa,T.F., Liu,W., Song,Y.,
            Salvetti,E., Wrobel,A., Rasinkangas,P., Parkhill,J., Rea,M.C.,
            O'Sullivan,O., Ritari,J., Douillard,F.P., Paul Ross,R., Yang,R.,
            Briner,A.E., Felis,G.E., de Vos,W.M., Barrangou,R.,
            Klaenhammer,T.R., Caufield,P.W., Cui,Y., Zhang,H. and O'Toole,P.W.
  TITLE     Expanding the biotechnology potential of lactobacilli through
            comparative genomics of 213 strains and associated genera
  JOURNAL   Nat Commun 6, 8322 (2015)
   PUBMED   26415554
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941717)
  AUTHORS   Sun,Z., Harris,H.M., Argimon,S., Zhang,W., McCann,A., Jeffery,I.B.,
            Yang,X., Guo,C., Liu,W., Song,Y., Yang,R., Cui,Y., Zhang,H. and
            O'Toole,P.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2014) Inner Mongolia Agricultural University, Key
            Laboratory of Dairy Biotechnology and Engineering, Education
            Ministry of China, Zhaowuda Road, No. 306, Hohhot, Inner Mongolia
            010018, The People's Republic of China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AZCQ00000000.1.
            The Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425
            whole genome shotgun (WGS) project has the project accession
            NZ_AZCQ00000000.  This version of the project (01) has the
            accession number NZ_AZCQ01000000, and consists of sequences
            AZCQ01000001-AZCQ01000038.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2
            Genome Coverage       :: 100x
            Sequencing Technology :: Illumina MiSeq; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001435405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:35:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,757
            CDSs (total)                      :: 2,691
            Genes (coding)                    :: 2,644
            CDSs (with protein)               :: 2,644
            Genes (RNA)                       :: 66
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 19 of 47
            Pseudo Genes (incomplete)         :: 23 of 47
            Pseudo Genes (internal stop)      :: 10 of 47
            Pseudo Genes (multiple problems)  :: 5 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941717
                     /organism="Lacticaseibacillus rhamnosus DSM 20021 = JCM
                     1136 = NBRC 3425"
                     /mol_type="genomic DNA"
                     /strain="DSM 20021"
                     /culture_collection="DSM:20021"
                     /type_material="type strain of Lactobacillus casei subsp.
                     rhamnosus"
                     /db_xref="taxon:1423797"
                     /collection_date="1989"
WGS         AZCQ01000001-AZCQ01000038
WGS_SCAFLD  NZ_AZCQ01000001-NZ_AZCQ01000038
//
LOCUS       NZ_JAAONS010000000   1987806 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactobacillus acidophilus strain BCRC 14079, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAONS000000000
VERSION     NZ_JAAONS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14363926
            Assembly: GCF_017009475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactobacillus acidophilus
  ORGANISM  Lactobacillus acidophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactobacillus.
REFERENCE   1  (bases 1 to 1987806)
  AUTHORS   Huang,C.H., Chen,C.C., Chiu,S.H., Liou,J.S., Lin,Y.C., Lin,J.S.,
            Huang,L. and Watanabe,K.
  TITLE     Development of a High-Resolution Single-Nucleotide Polymorphism
            Strain-Typing Assay Using Whole Genome-Based Analyses for the
            Lactobacillus acidophilus Probiotic Strain
  JOURNAL   Microorganisms 8 (9), 1445 (2020)
   PUBMED   32967209
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987806)
  AUTHORS   Huang,C.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2020) Bioresource Collection and Research Center,
            Food Industry Research and Development Institute, Bioresource
            Collection and Research Center, Food Industry Research and
            Development Institute, 331 Sh, Hsinchu, Taiwan 30062, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAONS000000000.1.
            The Lactobacillus acidophilus whole genome shotgun (WGS) project
            has the project accession NZ_JAAONS000000000.  This version of the
            project (01) has the accession number NZ_JAAONS010000000, and
            consists of sequences JAAONS010000001-JAAONS010000021.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017009475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:26:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,933
            CDSs (total)                      :: 1,867
            Genes (coding)                    :: 1,778
            CDSs (with protein)               :: 1,778
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2 (5S, 16S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 57
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 29 of 89
            Pseudo Genes (incomplete)         :: 27 of 89
            Pseudo Genes (internal stop)      :: 48 of 89
            Pseudo Genes (multiple problems)  :: 13 of 89
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987806
                     /organism="Lactobacillus acidophilus"
                     /mol_type="genomic DNA"
                     /strain="BCRC 14079"
                     /isolation_source="commercial yoghurt"
                     /db_xref="taxon:1579"
WGS         JAAONS010000001-JAAONS010000021
WGS_SCAFLD  NZ_JAAONS010000001-NZ_JAAONS010000021
//
LOCUS       NZ_JAAONT010000000   1950144 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactobacillus acidophilus strain BCRC 16092, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAONT000000000
VERSION     NZ_JAAONT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14363928
            Assembly: GCF_017009575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactobacillus acidophilus
  ORGANISM  Lactobacillus acidophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactobacillus.
REFERENCE   1  (bases 1 to 1950144)
  AUTHORS   Huang,C.H., Chen,C.C., Chiu,S.H., Liou,J.S., Lin,Y.C., Lin,J.S.,
            Huang,L. and Watanabe,K.
  TITLE     Development of a High-Resolution Single-Nucleotide Polymorphism
            Strain-Typing Assay Using Whole Genome-Based Analyses for the
            Lactobacillus acidophilus Probiotic Strain
  JOURNAL   Microorganisms 8 (9), 1445 (2020)
   PUBMED   32967209
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1950144)
  AUTHORS   Huang,C.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2020) Bioresource Collection and Research Center,
            Food Industry Research and Development Institute, Bioresource
            Collection and Research Center, Food Industry Research and
            Development Institute, 331 Sh, Hsinchu, Taiwan 30062, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAONT000000000.1.
            The Lactobacillus acidophilus whole genome shotgun (WGS) project
            has the project accession NZ_JAAONT000000000.  This version of the
            project (01) has the accession number NZ_JAAONT010000000, and
            consists of sequences JAAONT010000001-JAAONT010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017009575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:30:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,919
            CDSs (total)                      :: 1,852
            Genes (coding)                    :: 1,756
            CDSs (with protein)               :: 1,756
            Genes (RNA)                       :: 67
            rRNAs                             :: 4 (5S)
            complete rRNAs                    :: 4 (5S)
            tRNAs                             :: 60
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 70 of 96
            Pseudo Genes (incomplete)         :: 26 of 96
            Pseudo Genes (internal stop)      :: 17 of 96
            Pseudo Genes (multiple problems)  :: 15 of 96
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1950144
                     /organism="Lactobacillus acidophilus"
                     /mol_type="genomic DNA"
                     /strain="BCRC 16092"
                     /isolation_source="acidophilus milk"
                     /db_xref="taxon:1579"
WGS         JAAONT010000001-JAAONT010000020
WGS_SCAFLD  NZ_JAAONT010000001-NZ_JAAONT010000020
//
LOCUS       NZ_JAAPAR010000000   2003593 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactobacillus acidophilus strain BCRC 17486, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAPAR000000000
VERSION     NZ_JAAPAR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14371319
            Assembly: GCF_017009585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactobacillus acidophilus
  ORGANISM  Lactobacillus acidophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactobacillus.
REFERENCE   1  (bases 1 to 2003593)
  AUTHORS   Huang,C.H., Chen,C.C., Chiu,S.H., Liou,J.S., Lin,Y.C., Lin,J.S.,
            Huang,L. and Watanabe,K.
  TITLE     Development of a High-Resolution Single-Nucleotide Polymorphism
            Strain-Typing Assay Using Whole Genome-Based Analyses for the
            Lactobacillus acidophilus Probiotic Strain
  JOURNAL   Microorganisms 8 (9), 1445 (2020)
   PUBMED   32967209
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003593)
  AUTHORS   Huang,C.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2020) Bioresource Collection and Research Center,
            Food Industry Research and Development Institute, Bioresource
            Collection and Research Center, Food Industry Research and
            Development Institute, 331 Sh, Hsinchu, Taiwan 30062, Taiwan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAPAR000000000.1.
            The Lactobacillus acidophilus whole genome shotgun (WGS) project
            has the project accession NZ_JAAPAR000000000.  This version of the
            project (01) has the accession number NZ_JAAPAR010000000, and
            consists of sequences JAAPAR010000001-JAAPAR010000024.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017009585.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,971
            CDSs (total)                      :: 1,904
            Genes (coding)                    :: 1,766
            CDSs (with protein)               :: 1,766
            Genes (RNA)                       :: 67
            rRNAs                             :: 4, 2 (5S, 16S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 58
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 83 of 138
            Pseudo Genes (incomplete)         :: 34 of 138
            Pseudo Genes (internal stop)      :: 40 of 138
            Pseudo Genes (multiple problems)  :: 17 of 138
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003593
                     /organism="Lactobacillus acidophilus"
                     /mol_type="genomic DNA"
                     /strain="BCRC 17486"
                     /isolation_source="intestine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1579"
WGS         JAAPAR010000001-JAAPAR010000024
WGS_SCAFLD  NZ_JAAPAR010000001-NZ_JAAPAR010000024
//
LOCUS       NZ_PODF01000000      3302201 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_D8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PODF00000000
VERSION     NZ_PODF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324440
            Assembly: GCF_028895945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3302201)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3302201)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PODF00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_PODF00000000.  This version of
            the project (01) has the accession number NZ_PODF01000000, and
            consists of sequences PODF01000001-PODF01000062.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:27:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,141
            CDSs (total)                      :: 3,076
            Genes (coding)                    :: 3,054
            CDSs (with protein)               :: 3,054
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 6 of 22
            Pseudo Genes (incomplete)         :: 12 of 22
            Pseudo Genes (internal stop)      :: 7 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3302201
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_D8"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         PODF01000001-PODF01000062
WGS_SCAFLD  NZ_PODF01000001-NZ_PODF01000062
//
LOCUS       NZ_PODB01000000      3299733 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_CC5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PODB00000000
VERSION     NZ_PODB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324444
            Assembly: GCF_028895785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3299733)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3299733)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PODB00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_PODB00000000.  This version of
            the project (01) has the accession number NZ_PODB01000000, and
            consists of sequences PODB01000001-PODB01000048.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895785.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:26:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,161
            CDSs (total)                      :: 3,080
            Genes (coding)                    :: 3,057
            CDSs (with protein)               :: 3,057
            Genes (RNA)                       :: 81
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 23S)
            partial rRNAs                     :: 3, 1 (16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 6 of 23
            Pseudo Genes (incomplete)         :: 14 of 23
            Pseudo Genes (internal stop)      :: 5 of 23
            Pseudo Genes (multiple problems)  :: 2 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299733
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_CC5"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         PODB01000001-PODB01000048
WGS_SCAFLD  NZ_PODB01000001-NZ_PODB01000048
//
LOCUS       NZ_JBVQRK020000000   6368364 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YK31, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBVQRK000000000
VERSION     NZ_JBVQRK000000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54691600
            Assembly: GCF_055721385.3
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 6368364)
  AUTHORS   Uskudar Guclu,A., Salih Dogan,H., Yalcin,S. and Kurt Azap,O.
  TITLE     Whole-genome sequencing and analysis of clinical Klebsiella
            pneumoniae isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6368364)
  AUTHORS   Uskudar Guclu,A., Salih Dogan,H., Yalcin,S. and Kurt Azap,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2026) Department of Medical Microbiology, Baskent
            University, Baglica Campus Fatih Sultan Neighborhood Eskisehir Road
            18th km, 06790 Etimesgut, Ankara 06790, Turkey
REFERENCE   3  (bases 1 to 6368364)
  AUTHORS   Uskudar Guclu,A., Salih Dogan,H., Yalcin,S. and Kurt Azap,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2026) Department of Medical Microbiology, Baskent
            University, Baglica Campus Fatih Sultan Neighborhood Eskisehir Road
            18th km, 06790 Etimesgut, Ankara 06790, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBVQRK000000000.2.
            
            On Apr 20, 2026 this sequence version replaced gi:3258739516.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBVQRK000000000.  This version of the
            project (02) has the accession number NZ_JBVQRK020000000, and
            consists of sequences JBVQRK020000006-JBVQRK020000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            In April 2026 1 sequence was suppressed because it was found to be
            a contaminant.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.0x
            Sequencing Technology  :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_055721385.3-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 03:12:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,416
            CDSs (total)                      :: 6,289
            Genes (coding)                    :: 5,987
            CDSs (with protein)               :: 5,987
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 302
            CDSs (without protein)            :: 302
            Pseudo Genes (ambiguous residues) :: 0 of 302
            Pseudo Genes (frameshifted)       :: 159 of 302
            Pseudo Genes (incomplete)         :: 145 of 302
            Pseudo Genes (internal stop)      :: 43 of 302
            Pseudo Genes (multiple problems)  :: 37 of 302
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6368364
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YK31"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="Turkey: Ankara"
                     /lat_lon="39.92 N 32.83 E"
                     /collection_date="2024-03-25"
                     /collected_by="Medical microbiology laboratory"
WGS         JBVQRK020000001-JBVQRK020000004
WGS         JBVQRK020000006-JBVQRK020000007
WGS_SCAFLD  NZ_CM146760
WGS_SCAFLD  NZ_JBVQRK020000002-NZ_JBVQRK020000004
WGS_SCAFLD  NZ_JBVQRK020000006-NZ_JBVQRK020000007
//
LOCUS       NZ_POCN01000000      3292195 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_GG4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_POCN00000000
VERSION     NZ_POCN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324458
            Assembly: GCF_028895555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3292195)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3292195)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            POCN00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_POCN00000000.  This version of
            the project (01) has the accession number NZ_POCN01000000, and
            consists of sequences POCN01000001-POCN01000048.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:32:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,146
            CDSs (total)                      :: 3,079
            Genes (coding)                    :: 3,057
            CDSs (with protein)               :: 3,057
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 6 of 22
            Pseudo Genes (incomplete)         :: 13 of 22
            Pseudo Genes (internal stop)      :: 5 of 22
            Pseudo Genes (multiple problems)  :: 2 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292195
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_GG4"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         POCN01000001-POCN01000048
WGS_SCAFLD  NZ_POCN01000001-NZ_POCN01000048
//
LOCUS       NZ_POCP01000000      3284233 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_HH2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_POCP00000000
VERSION     NZ_POCP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324456
            Assembly: GCF_028895585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3284233)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3284233)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            POCP00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_POCP00000000.  This version of
            the project (01) has the accession number NZ_POCP01000000, and
            consists of sequences POCP01000001-POCP01000081.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895585.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:31:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,133
            CDSs (total)                      :: 3,070
            Genes (coding)                    :: 3,043
            CDSs (with protein)               :: 3,043
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 6 of 27
            Pseudo Genes (incomplete)         :: 17 of 27
            Pseudo Genes (internal stop)      :: 6 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3284233
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_HH2"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         POCP01000001-POCP01000081
WGS_SCAFLD  NZ_POCP01000001-NZ_POCP01000081
//
LOCUS       NZ_PODE01000000      3294998 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_DD1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PODE00000000
VERSION     NZ_PODE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324441
            Assembly: GCF_028895905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3294998)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3294998)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PODE00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_PODE00000000.  This version of
            the project (01) has the accession number NZ_PODE01000000, and
            consists of sequences PODE01000001-PODE01000034.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895905.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:35:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,139
            CDSs (total)                      :: 3,072
            Genes (coding)                    :: 3,051
            CDSs (with protein)               :: 3,051
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 1 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 10 of 21
            Pseudo Genes (internal stop)      :: 6 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294998
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_DD1"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         PODE01000001-PODE01000034
WGS_SCAFLD  NZ_PODE01000001-NZ_PODE01000034
//
LOCUS       NZ_PODH01000000      3299313 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_C1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PODH00000000
VERSION     NZ_PODH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324438
            Assembly: GCF_028895965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3299313)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3299313)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PODH00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_PODH00000000.  This version of
            the project (01) has the accession number NZ_PODH01000000, and
            consists of sequences PODH01000001-PODH01000061.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:35:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,170
            CDSs (total)                      :: 3,096
            Genes (coding)                    :: 3,073
            CDSs (with protein)               :: 3,073
            Genes (RNA)                       :: 74
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 7 of 23
            Pseudo Genes (incomplete)         :: 12 of 23
            Pseudo Genes (internal stop)      :: 6 of 23
            Pseudo Genes (multiple problems)  :: 2 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3299313
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_C1"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         PODH01000001-PODH01000061
WGS_SCAFLD  NZ_PODH01000001-NZ_PODH01000061
//
LOCUS       NZ_POCQ01000000      3292280 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_BB11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_POCQ00000000
VERSION     NZ_POCQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324455
            Assembly: GCF_028895625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3292280)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3292280)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            POCQ00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_POCQ00000000.  This version of
            the project (01) has the accession number NZ_POCQ01000000, and
            consists of sequences POCQ01000001-POCQ01000065.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895625.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:32:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,141
            CDSs (total)                      :: 3,074
            Genes (coding)                    :: 3,050
            CDSs (with protein)               :: 3,050
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 6 of 24
            Pseudo Genes (incomplete)         :: 14 of 24
            Pseudo Genes (internal stop)      :: 6 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292280
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_BB11"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         POCQ01000001-POCQ01000065
WGS_SCAFLD  NZ_POCQ01000001-NZ_POCQ01000065
//
LOCUS       NZ_PODA01000000      3293426 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_DD5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PODA00000000
VERSION     NZ_PODA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324445
            Assembly: GCF_028895845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3293426)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3293426)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PODA00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_PODA00000000.  This version of
            the project (01) has the accession number NZ_PODA01000000, and
            consists of sequences PODA01000001-PODA01000063.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:34:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,144
            CDSs (total)                      :: 3,076
            Genes (coding)                    :: 3,055
            CDSs (with protein)               :: 3,055
            Genes (RNA)                       :: 68
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 6 of 21
            Pseudo Genes (incomplete)         :: 12 of 21
            Pseudo Genes (internal stop)      :: 5 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293426
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_DD5"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         PODA01000001-PODA01000063
WGS_SCAFLD  NZ_PODA01000001-NZ_PODA01000063
//
LOCUS       NZ_PODD01000000      3304752 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_F11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PODD00000000
VERSION     NZ_PODD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324442
            Assembly: GCF_028895885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3304752)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3304752)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PODD00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_PODD00000000.  This version of
            the project (01) has the accession number NZ_PODD01000000, and
            consists of sequences PODD01000001-PODD01000070.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:38:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,160
            CDSs (total)                      :: 3,082
            Genes (coding)                    :: 3,060
            CDSs (with protein)               :: 3,060
            Genes (RNA)                       :: 78
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 6 of 22
            Pseudo Genes (incomplete)         :: 13 of 22
            Pseudo Genes (internal stop)      :: 6 of 22
            Pseudo Genes (multiple problems)  :: 3 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304752
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_F11"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         PODD01000001-PODD01000070
WGS_SCAFLD  NZ_PODD01000001-NZ_PODD01000070
//
LOCUS       NZ_PODG01000000      3298271 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus plantarum strain T01_D6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PODG00000000
VERSION     NZ_PODG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08324439
            Assembly: GCF_028895925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus plantarum
  ORGANISM  Lactiplantibacillus plantarum
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3298271)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J.A. and
            Jans,C.
  TITLE     Lactobacillus plantarum genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3298271)
  AUTHORS   Isenring,J., Geirnaert,A., Hall,A., Lacroix,C., Stevens,M.J. and
            Jans,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2018) Institute of Food, Nutrition and Health,
            ETH Zurich, Schmelzbergstrasse 7, Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PODG00000000.1.
            The Lactiplantibacillus plantarum whole genome shotgun (WGS)
            project has the project accession NZ_PODG00000000.  This version of
            the project (01) has the accession number NZ_PODG01000000, and
            consists of sequences PODG01000001-PODG01000053.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 05-JAN-2018
            Assembly Method           :: CLC NGS Cell v. 9
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCF_000203855.3
            Genome Coverage           :: 17.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028895925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:39:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,160
            CDSs (total)                      :: 3,099
            Genes (coding)                    :: 3,076
            CDSs (with protein)               :: 3,076
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 6 of 23
            Pseudo Genes (incomplete)         :: 13 of 23
            Pseudo Genes (internal stop)      :: 6 of 23
            Pseudo Genes (multiple problems)  :: 2 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298271
                     /organism="Lactiplantibacillus plantarum"
                     /mol_type="genomic DNA"
                     /strain="T01_D6"
                     /isolation_source="human feces in bioreactor"
                     /db_xref="taxon:1590"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.377 N 8.5500 E"
                     /collection_date="2017-10"
WGS         PODG01000001-PODG01000053
WGS_SCAFLD  NZ_PODG01000001-NZ_PODG01000053
//
LOCUS       NZ_JURX01000000      5685907 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella ornithinolytica strain 811_RORN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JURX00000000
VERSION     NZ_JURX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03198025
            Assembly: GCF_001066395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella ornithinolytica (Raoultella ornithinolytica)
  ORGANISM  Klebsiella ornithinolytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella.
REFERENCE   1  (bases 1 to 5685907)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5685907)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JURX00000000.1.
            The Klebsiella ornithinolytica whole genome shotgun (WGS) project
            has the project accession NZ_JURX00000000.  This version of the
            project (01) has the accession number NZ_JURX01000000, and consists
            of sequences JURX01000001-JURX01000251.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 15x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001066395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,493
            CDSs (total)                      :: 5,453
            Genes (coding)                    :: 5,322
            CDSs (with protein)               :: 5,322
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 28
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 42 of 131
            Pseudo Genes (incomplete)         :: 98 of 131
            Pseudo Genes (internal stop)      :: 14 of 131
            Pseudo Genes (multiple problems)  :: 21 of 131
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5685907
                     /organism="Klebsiella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="811_RORN"
                     /host="Homo sapiens"
                     /db_xref="taxon:54291"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JURX01000001-JURX01000251
WGS_SCAFLD  NZ_JURX01000001-NZ_JURX01000251
//
LOCUS       NZ_JBGGVC010000000   3801752 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain HS3-L3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGGVC000000000
VERSION     NZ_JBGGVC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140327
            Assembly: GCF_049523915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3801752)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3801752)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGGVC000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBGGVC000000000.  This version of the
            project (01) has the accession number NZ_JBGGVC010000000, and
            consists of sequences JBGGVC010000001-JBGGVC010000138.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 663x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049523915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:19:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,671
            CDSs (total)                      :: 3,585
            Genes (coding)                    :: 3,402
            CDSs (with protein)               :: 3,402
            Genes (RNA)                       :: 86
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 76
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 185
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 185
            Pseudo Genes (frameshifted)       :: 47 of 185
            Pseudo Genes (incomplete)         :: 128 of 185
            Pseudo Genes (internal stop)      :: 27 of 185
            Pseudo Genes (multiple problems)  :: 15 of 185
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3801752
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="HS3-L3"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Hiroshima"
                     /collection_date="2018-08-21"
WGS         JBGGVC010000001-JBGGVC010000138
WGS_SCAFLD  NZ_JBGGVC010000001-NZ_JBGGVC010000138
//
LOCUS       NZ_JBGGVG010000000   3846672 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain KY4-L2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGGVG000000000
VERSION     NZ_JBGGVG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140332
            Assembly: GCF_049523715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3846672)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3846672)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGGVG000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBGGVG000000000.  This version of the
            project (01) has the accession number NZ_JBGGVG010000000, and
            consists of sequences JBGGVG010000001-JBGGVG010000302.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 578x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049523715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:16:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,673
            CDSs (total)                      :: 3,595
            Genes (coding)                    :: 3,476
            CDSs (with protein)               :: 3,476
            Genes (RNA)                       :: 78
            rRNAs                             :: 3, 2 (16S, 23S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 38 of 120
            Pseudo Genes (incomplete)         :: 69 of 120
            Pseudo Genes (internal stop)      :: 26 of 120
            Pseudo Genes (multiple problems)  :: 11 of 120
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846672
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="KY4-L2"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="2018-07-17"
WGS         JBGGVG010000001-JBGGVG010000302
WGS_SCAFLD  NZ_JBGGVG010000001-NZ_JBGGVG010000302
//
LOCUS       NZ_JBGGVN010000000   3875490 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain KY5-L3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGGVN000000000
VERSION     NZ_JBGGVN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140339
            Assembly: GCF_049518115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3875490)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3875490)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGGVN000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBGGVN000000000.  This version of the
            project (01) has the accession number NZ_JBGGVN010000000, and
            consists of sequences JBGGVN010000001-JBGGVN010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 564x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049518115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:18:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,705
            CDSs (total)                      :: 3,617
            Genes (coding)                    :: 3,441
            CDSs (with protein)               :: 3,441
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 76
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 176
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 47 of 177
            Pseudo Genes (incomplete)         :: 120 of 177
            Pseudo Genes (internal stop)      :: 25 of 177
            Pseudo Genes (multiple problems)  :: 13 of 177
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3875490
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="KY5-L3"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="2018-05-29"
WGS         JBGGVN010000001-JBGGVN010000158
WGS_SCAFLD  NZ_JBGGVN010000001-NZ_JBGGVN010000158
//
LOCUS       NZ_JBHIVL010000000   3886801 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain KY5-L7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHIVL000000000
VERSION     NZ_JBHIVL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140343
            Assembly: GCF_049517975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3886801)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3886801)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHIVL000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBHIVL000000000.  This version of the
            project (01) has the accession number NZ_JBHIVL010000000, and
            consists of sequences JBHIVL010000001-JBHIVL010000142.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 641x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049517975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:17:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,705
            CDSs (total)                      :: 3,617
            Genes (coding)                    :: 3,462
            CDSs (with protein)               :: 3,462
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 76
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 41 of 156
            Pseudo Genes (incomplete)         :: 104 of 156
            Pseudo Genes (internal stop)      :: 27 of 156
            Pseudo Genes (multiple problems)  :: 14 of 156
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3886801
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="KY5-L7"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="2018-05-29"
WGS         JBHIVL010000001-JBHIVL010000142
WGS_SCAFLD  NZ_JBHIVL010000001-NZ_JBHIVL010000142
//
LOCUS       NZ_JBGGVB010000000   3753563 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain HS3-L2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGGVB000000000
VERSION     NZ_JBGGVB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140326
            Assembly: GCF_049523935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3753563)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3753563)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGGVB000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBGGVB000000000.  This version of the
            project (01) has the accession number NZ_JBGGVB010000000, and
            consists of sequences JBGGVB010000001-JBGGVB010000121.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 798x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049523935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:16:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,609
            CDSs (total)                      :: 3,523
            Genes (coding)                    :: 3,352
            CDSs (with protein)               :: 3,352
            Genes (RNA)                       :: 86
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 76
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 171
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 46 of 173
            Pseudo Genes (incomplete)         :: 114 of 173
            Pseudo Genes (internal stop)      :: 29 of 173
            Pseudo Genes (multiple problems)  :: 14 of 173
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3753563
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="HS3-L2"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Hiroshima"
                     /collection_date="2018-08-21"
WGS         JBGGVB010000001-JBGGVB010000121
WGS_SCAFLD  NZ_JBGGVB010000001-NZ_JBGGVB010000121
//
LOCUS       NZ_JBGGVS010000000   3846865 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain KY5-L10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGGVS000000000
VERSION     NZ_JBGGVS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140346
            Assembly: GCF_049517855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3846865)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3846865)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGGVS000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBGGVS000000000.  This version of the
            project (01) has the accession number NZ_JBGGVS010000000, and
            consists of sequences JBGGVS010000001-JBGGVS010000144.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 574x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049517855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:26:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,660
            CDSs (total)                      :: 3,572
            Genes (coding)                    :: 3,413
            CDSs (with protein)               :: 3,413
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 76
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 39 of 160
            Pseudo Genes (incomplete)         :: 112 of 160
            Pseudo Genes (internal stop)      :: 23 of 160
            Pseudo Genes (multiple problems)  :: 11 of 160
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846865
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="KY5-L10"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Kyoto"
                     /collection_date="2018-05-29"
WGS         JBGGVS010000001-JBGGVS010000144
WGS_SCAFLD  NZ_JBGGVS010000001-NZ_JBGGVS010000144
//
LOCUS       NZ_JBGGVV010000000   3858557 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain NG3-L3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGGVV000000000
VERSION     NZ_JBGGVV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140349
            Assembly: GCF_049517695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3858557)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3858557)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGGVV000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBGGVV000000000.  This version of the
            project (01) has the accession number NZ_JBGGVV010000000, and
            consists of sequences JBGGVV010000001-JBGGVV010000148.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 599x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049517695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:27:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,695
            CDSs (total)                      :: 3,616
            Genes (coding)                    :: 3,436
            CDSs (with protein)               :: 3,436
            Genes (RNA)                       :: 79
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 69
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 51 of 182
            Pseudo Genes (incomplete)         :: 113 of 182
            Pseudo Genes (internal stop)      :: 35 of 182
            Pseudo Genes (multiple problems)  :: 16 of 182
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3858557
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="NG3-L3"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Nagano"
                     /collection_date="2018-08-21"
WGS         JBGGVV010000001-JBGGVV010000148
WGS_SCAFLD  NZ_JBGGVV010000001-NZ_JBGGVV010000148
//
LOCUS       NZ_JBGGVA010000000   3715789 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain HS3-L1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBGGVA000000000
VERSION     NZ_JBGGVA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140325
            Assembly: GCF_049524035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3715789)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3715789)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBGGVA000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBGGVA000000000.  This version of the
            project (01) has the accession number NZ_JBGGVA010000000, and
            consists of sequences JBGGVA010000001-JBGGVA010000137.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 609x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049524035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:20:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,580
            CDSs (total)                      :: 3,497
            Genes (coding)                    :: 3,315
            CDSs (with protein)               :: 3,315
            Genes (RNA)                       :: 83
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 73
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 46 of 184
            Pseudo Genes (incomplete)         :: 126 of 184
            Pseudo Genes (internal stop)      :: 30 of 184
            Pseudo Genes (multiple problems)  :: 16 of 184
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3715789
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="HS3-L1"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Hiroshima"
                     /collection_date="2018-08-21"
WGS         JBGGVA010000001-JBGGVA010000137
WGS_SCAFLD  NZ_JBGGVA010000001-NZ_JBGGVA010000137
//
LOCUS       NZ_VNVC01000000      6111391 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella ornithinolytica strain 717709-17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VNVC00000000
VERSION     NZ_VNVC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12212323
            Assembly: GCF_020116345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella ornithinolytica (Raoultella ornithinolytica)
  ORGANISM  Klebsiella ornithinolytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella.
REFERENCE   1  (bases 1 to 6111391)
  AUTHORS   Cuenod,A., Wuthrich,D., Seth-Smith,H.M.B., Ott,C., Gehringer,C.,
            Foucault,F., Mouchet,R., Kassim,A., Revathi,G., Vogt,D.R., von
            Felten,S., Bassetti,S., Tschudin-Sutter,S., Hettich,T.,
            Schlotterbeck,G., Homberger,C., Casanova,C., Moran-Gilad,J.,
            Sagi,O., Rodriguez-Sanchez,B., Muller,F., Aerni,M., Gaia,V., van
            Dessel,H., Kampinga,G.A., Muller,C., Daubenberger,C., Pfluger,V.
            and Egli,A.
  TITLE     Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal
            importance of Klebsiella oxytoca group in invasive infections: a
            retrospective clinical study
  JOURNAL   Genome Med 13 (1), 150 (2021)
   PUBMED   34517886
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6111391)
  AUTHORS   Cuenod,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2019) Department of Biomedicine, University of
            Basel, Hebelstrasse 20, Basel, BS 4051, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VNVC00000000.1.
            The Klebsiella ornithinolytica whole genome shotgun (WGS) project
            has the project accession NZ_VNVC00000000.  This version of the
            project (01) has the accession number NZ_VNVC01000000, and consists
            of sequences VNVC01000001-VNVC01000184.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020116345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:56:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,951
            CDSs (total)                      :: 5,859
            Genes (coding)                    :: 5,715
            CDSs (with protein)               :: 5,715
            Genes (RNA)                       :: 92
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 53 of 144
            Pseudo Genes (incomplete)         :: 109 of 144
            Pseudo Genes (internal stop)      :: 17 of 144
            Pseudo Genes (multiple problems)  :: 29 of 144
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6111391
                     /organism="Klebsiella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="717709-17"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:54291"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.562446 N 7.583217 E"
                     /collection_date="2017"
WGS         VNVC01000001-VNVC01000184
WGS_SCAFLD  NZ_VNVC01000001-NZ_VNVC01000184
//
LOCUS       NZ_JBHIVJ010000000   3703117 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain HS3-L4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHIVJ000000000
VERSION     NZ_JBHIVJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140328
            Assembly: GCF_049523895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3703117)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3703117)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHIVJ000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBHIVJ000000000.  This version of the
            project (01) has the accession number NZ_JBHIVJ010000000, and
            consists of sequences JBHIVJ010000001-JBHIVJ010000135.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 613x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049523895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:24:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,565
            CDSs (total)                      :: 3,482
            Genes (coding)                    :: 3,300
            CDSs (with protein)               :: 3,300
            Genes (RNA)                       :: 83
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 73
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 46 of 184
            Pseudo Genes (incomplete)         :: 126 of 184
            Pseudo Genes (internal stop)      :: 29 of 184
            Pseudo Genes (multiple problems)  :: 15 of 184
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3703117
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="HS3-L4"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Hiroshima"
                     /collection_date="2018-08-21"
WGS         JBHIVJ010000001-JBHIVJ010000135
WGS_SCAFLD  NZ_JBHIVJ010000001-NZ_JBHIVJ010000135
//
LOCUS       NZ_JBHIVM010000000   3909933 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactiplantibacillus pentosus strain NG3-L10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBHIVM000000000
VERSION     NZ_JBHIVM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43140350
            Assembly: GCF_049517755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactiplantibacillus pentosus
  ORGANISM  Lactiplantibacillus pentosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactiplantibacillus.
REFERENCE   1  (bases 1 to 3909933)
  AUTHORS   Liu,Y.
  TITLE     Comparative genome analysis on immunomodulatory ability of Lactic
            Acid Bacteria from Japanese pickles
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3909933)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-AUG-2024) Life Science and Technology, Tokyo
            Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo, Tokyo
            1528550, Japan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBHIVM000000000.1.
            The Lactiplantibacillus pentosus whole genome shotgun (WGS) project
            has the project accession NZ_JBHIVM000000000.  This version of the
            project (01) has the accession number NZ_JBHIVM010000000, and
            consists of sequences JBHIVM010000001-JBHIVM010000301.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2258x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049517755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:27:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,806
            CDSs (total)                      :: 3,726
            Genes (coding)                    :: 3,502
            CDSs (with protein)               :: 3,502
            Genes (RNA)                       :: 80
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 70
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 226
            CDSs (without protein)            :: 224
            Pseudo Genes (ambiguous residues) :: 0 of 226
            Pseudo Genes (frameshifted)       :: 53 of 226
            Pseudo Genes (incomplete)         :: 154 of 226
            Pseudo Genes (internal stop)      :: 38 of 226
            Pseudo Genes (multiple problems)  :: 17 of 226
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3909933
                     /organism="Lactiplantibacillus pentosus"
                     /mol_type="genomic DNA"
                     /strain="NG3-L10"
                     /isolation_source="Japanese pickles"
                     /db_xref="taxon:1589"
                     /geo_loc_name="Japan: Nagano"
                     /collection_date="2018-08-21"
WGS         JBHIVM010000001-JBHIVM010000301
WGS_SCAFLD  NZ_JBHIVM010000001-NZ_JBHIVM010000301
//
LOCUS       NZ_JABXQZ010000000   6132301 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella oxytoca strain RHBSTW-00178, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABXQZ000000000
VERSION     NZ_JABXQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15148527
            Assembly: GCF_014103895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella oxytoca
  ORGANISM  Klebsiella oxytoca
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella.
REFERENCE   1  (bases 1 to 6132301)
  AUTHORS   AbuOun,M., Jones,H., Stubberfield,E., Gilson,D., Shaw,L.P.,
            Hubbard,A.T.M., Chau,K.K., Sebra,R., Peto,T.E.A., Crook,D.W.,
            Read,D.S., Gweon,H.S., Walker,A.S., Stoesser,N., Smith,R.P.,
            Anjum,M.F. and On Behalf Of The Rehab,Consortium.
  TITLE     A genomic epidemiological study shows that prevalence of
            antimicrobial resistance in Enterobacterales is associated with the
            livestock host, as well as antimicrobial usage
  JOURNAL   Microb Genom 7 (10) (2021)
   PUBMED   34609275
REFERENCE   2  (bases 1 to 6132301)
  AUTHORS   Shaw,L.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUN-2020) Nuffield Department of Medicine, University
            of Oxford, John Radcliffe Hospital, Oxford OX3 9DU, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABXQZ000000000.1.
            The Klebsiella oxytoca whole genome shotgun (WGS) project has the
            project accession NZ_JABXQZ000000000.  This version of the project
            (01) has the accession number NZ_JABXQZ010000000, and consists of
            sequences JABXQZ010000001-JABXQZ010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 84.3013902937902x
            Sequencing Technology  :: Illumina; PacBio SMRT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_014103895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:03:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,798
            CDSs (total)                      :: 5,683
            Genes (coding)                    :: 5,571
            CDSs (with protein)               :: 5,571
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 60 of 112
            Pseudo Genes (incomplete)         :: 74 of 112
            Pseudo Genes (internal stop)      :: 24 of 112
            Pseudo Genes (multiple problems)  :: 38 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6132301
                     /organism="Klebsiella oxytoca"
                     /mol_type="genomic DNA"
                     /strain="RHBSTW-00178"
                     /isolation_source="Freshwater sample from upstream of
                     wastewater treatment plant"
                     /db_xref="taxon:571"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
WGS         JABXQZ010000001-JABXQZ010000004
WGS_SCAFLD  NZ_JABXQZ010000001-NZ_JABXQZ010000004
//
LOCUS       NZ_CAKNCK010000000   5960629 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella ornithinolytica strain cpe105, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAKNCK000000000
VERSION     NZ_CAKNCK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA6451122
            Assembly: GCF_929614415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella ornithinolytica (Raoultella ornithinolytica)
  ORGANISM  Klebsiella ornithinolytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella.
REFERENCE   1  (bases 1 to 5960629)
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2022) WELLCOME SANGER INSTITUTE, Pathogen
            Informatics, Wellcome Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKNCK000000000.1.
            The Klebsiella ornithinolytica whole genome shotgun (WGS) project
            has the project accession NZ_CAKNCK000000000.  This version of the
            project (01) has the accession number NZ_CAKNCK010000000, and
            consists of sequences CAKNCK010000001-CAKNCK010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_929614415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:13:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,781
            CDSs (total)                      :: 5,667
            Genes (coding)                    :: 5,509
            CDSs (with protein)               :: 5,509
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 9 (5S)
            partial rRNAs                     :: 8, 7 (16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 53 of 158
            Pseudo Genes (incomplete)         :: 124 of 158
            Pseudo Genes (internal stop)      :: 23 of 158
            Pseudo Genes (multiple problems)  :: 35 of 158
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5960629
                     /organism="Klebsiella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="cpe105"
                     /isolation_source="PTC fluid"
                     /db_xref="taxon:54291"
WGS         CAKNCK010000001-CAKNCK010000055
WGS_SCAFLD  NZ_CAKNCK010000001-NZ_CAKNCK010000055
//
LOCUS       NZ_JAKWHG010000000   6192714 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella grimontii strain AGK0542, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKWHG000000000
VERSION     NZ_JAKWHG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN21467521
            Assembly: GCF_022543725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella grimontii
  ORGANISM  Klebsiella grimontii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella.
REFERENCE   1  (bases 1 to 6192714)
  AUTHORS   Knobloch,J.
  TITLE     Hospital wastewater - a mirror of the past and a guidepost for the
            future
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6192714)
  AUTHORS   Carlsen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2022) Krankenhaushygiene, Universitaetsklinikum
            Hamburg-Eppendorf, Martinistrasse 52, Hamburg 20251, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKWHG000000000.1.
            The Klebsiella grimontii whole genome shotgun (WGS) project has the
            project accession NZ_JAKWHG000000000.  This version of the project
            (01) has the accession number NZ_JAKWHG010000000, and consists of
            sequences JAKWHG010000001-JAKWHG010000195.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 106x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022543725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:26:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,074
            CDSs (total)                      :: 5,987
            Genes (coding)                    :: 5,803
            CDSs (with protein)               :: 5,803
            Genes (RNA)                       :: 87
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 1 of 184
            Pseudo Genes (frameshifted)       :: 66 of 184
            Pseudo Genes (incomplete)         :: 138 of 184
            Pseudo Genes (internal stop)      :: 17 of 184
            Pseudo Genes (multiple problems)  :: 33 of 184
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6192714
                     /organism="Klebsiella grimontii"
                     /mol_type="genomic DNA"
                     /strain="AGK0542"
                     /db_xref="taxon:2058152"
                     /collection_date="2019-11"
WGS         JAKWHG010000001-JAKWHG010000195
WGS_SCAFLD  NZ_JAKWHG010000001-NZ_JAKWHG010000195
//
LOCUS       NZ_JARTVK010000000   2282373 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS2 GDHZ 2017-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARTVK000000000
VERSION     NZ_JARTVK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34062697
            Assembly: GCF_029625665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2282373)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2282373)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARTVK000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARTVK000000000.  This version of the
            project (01) has the accession number NZ_JARTVK010000000, and
            consists of sequences JARTVK010000001-JARTVK010000163.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029625665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:44:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,324
            CDSs (total)                      :: 2,277
            Genes (coding)                    :: 2,156
            CDSs (with protein)               :: 2,156
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 121
            CDSs (without protein)            :: 121
            Pseudo Genes (ambiguous residues) :: 0 of 121
            Pseudo Genes (frameshifted)       :: 28 of 121
            Pseudo Genes (incomplete)         :: 89 of 121
            Pseudo Genes (internal stop)      :: 15 of 121
            Pseudo Genes (multiple problems)  :: 9 of 121
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282373
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS2 GDHZ 2017-1"
                     /serotype="Nontypeable"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China: Guangdong, Huizhou"
                     /collection_date="2017-01"
WGS         JARTVK010000001-JARTVK010000163
WGS_SCAFLD  NZ_JARTVK010000001-NZ_JARTVK010000163
//
LOCUS       NZ_JACYGO010000000   6274028 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella michiganensis strain CPE5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACYGO000000000
VERSION     NZ_JACYGO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16125013
            Assembly: GCF_015356405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella michiganensis
  ORGANISM  Klebsiella michiganensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella.
REFERENCE   1  (bases 1 to 6274028)
  AUTHORS   Klees,S., Effelsberg,N., Stuhrenberg,B., Mellmann,A., Schwarz,S.
            and Kock,R.
  TITLE     Prevalence and Epidemiology of Multidrug-Resistant Pathogens in the
            Food Chain and the Urban Environment in Northwestern Germany
  JOURNAL   Antibiotics (Basel) 9 (10), 708 (2020)
   PUBMED   33081274
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6274028)
  AUTHORS   Effelsberg,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2020) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Str 41, Muenster 48149, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACYGO000000000.1.
            The Klebsiella michiganensis whole genome shotgun (WGS) project has
            the project accession NZ_JACYGO000000000.  This version of the
            project (01) has the accession number NZ_JACYGO010000000, and
            consists of sequences JACYGO010000001-JACYGO010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. SMRT Link v8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 168x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015356405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:42:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,053
            CDSs (total)                      :: 5,933
            Genes (coding)                    :: 5,719
            CDSs (with protein)               :: 5,719
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 214
            CDSs (without protein)            :: 214
            Pseudo Genes (ambiguous residues) :: 0 of 214
            Pseudo Genes (frameshifted)       :: 98 of 214
            Pseudo Genes (incomplete)         :: 139 of 214
            Pseudo Genes (internal stop)      :: 30 of 214
            Pseudo Genes (multiple problems)  :: 46 of 214
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6274028
                     /organism="Klebsiella michiganensis"
                     /mol_type="genomic DNA"
                     /strain="CPE5"
                     /isolation_source="sludge"
                     /db_xref="taxon:1134687"
                     /collection_date="2019"
                     /collected_by="CVUA"
WGS         JACYGO010000001-JACYGO010000012
WGS_SCAFLD  NZ_JACYGO010000001-NZ_JACYGO010000012
//
LOCUS       NZ_JARUUR010000000   2259923 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS110 AHTH 2021-6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUR000000000
VERSION     NZ_JARUUR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34082718
            Assembly: GCF_029767425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2259923)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2259923)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUR000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUR000000000.  This version of the
            project (01) has the accession number NZ_JARUUR010000000, and
            consists of sequences JARUUR010000001-JARUUR010000128.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029767425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,284
            CDSs (total)                      :: 2,231
            Genes (coding)                    :: 2,121
            CDSs (with protein)               :: 2,121
            Genes (RNA)                       :: 53
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 32 of 110
            Pseudo Genes (incomplete)         :: 81 of 110
            Pseudo Genes (internal stop)      :: 11 of 110
            Pseudo Genes (multiple problems)  :: 12 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259923
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS110 AHTH 2021-6"
                     /serotype="Nontypeable"
                     /isolation_source="trachea"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Anhui, Taihu"
                     /collection_date="2021-06"
WGS         JARUUR010000001-JARUUR010000128
WGS_SCAFLD  NZ_JARUUR010000001-NZ_JARUUR010000128
//
LOCUS       NZ_JARUUY010000000   2211873 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS117 HBXG 2021-12, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUY000000000
VERSION     NZ_JARUUY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34083300
            Assembly: GCF_029767525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2211873)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2211873)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUY000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUY000000000.  This version of the
            project (01) has the accession number NZ_JARUUY010000000, and
            consists of sequences JARUUY010000001-JARUUY010000136.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029767525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,230
            CDSs (total)                      :: 2,181
            Genes (coding)                    :: 2,070
            CDSs (with protein)               :: 2,070
            Genes (RNA)                       :: 49
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 32 of 111
            Pseudo Genes (incomplete)         :: 76 of 111
            Pseudo Genes (internal stop)      :: 14 of 111
            Pseudo Genes (multiple problems)  :: 9 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211873
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS117 HBXG 2021-12"
                     /serotype="1"
                     /isolation_source="brain"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Xiaogan"
                     /collection_date="2021-12"
WGS         JARUUY010000001-JARUUY010000136
WGS_SCAFLD  NZ_JARUUY010000001-NZ_JARUUY010000136
//
LOCUS       NZ_JARUUT010000000   2227485 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS112 HBSZ 2021-8, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUT000000000
VERSION     NZ_JARUUT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34083211
            Assembly: GCF_029767415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2227485)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2227485)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUT000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUT000000000.  This version of the
            project (01) has the accession number NZ_JARUUT010000000, and
            consists of sequences JARUUT010000001-JARUUT010000155.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029767415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:54:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,243
            CDSs (total)                      :: 2,195
            Genes (coding)                    :: 2,083
            CDSs (with protein)               :: 2,083
            Genes (RNA)                       :: 48
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 28 of 112
            Pseudo Genes (incomplete)         :: 84 of 112
            Pseudo Genes (internal stop)      :: 15 of 112
            Pseudo Genes (multiple problems)  :: 13 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227485
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS112 HBSZ 2021-8"
                     /serotype="13"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Suizhou"
                     /collection_date="2021-08"
WGS         JARUUT010000001-JARUUT010000155
WGS_SCAFLD  NZ_JARUUT010000001-NZ_JARUUT010000155
//
LOCUS       NZ_JARURT010000000   2228965 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS13 HEBBD 2017-6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARURT000000000
VERSION     NZ_JARURT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34065394
            Assembly: GCF_029762825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2228965)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2228965)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARURT000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARURT000000000.  This version of the
            project (01) has the accession number NZ_JARURT010000000, and
            consists of sequences JARURT010000001-JARURT010000148.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029762825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:50:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,239
            CDSs (total)                      :: 2,192
            Genes (coding)                    :: 2,085
            CDSs (with protein)               :: 2,085
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 28 of 107
            Pseudo Genes (incomplete)         :: 73 of 107
            Pseudo Genes (internal stop)      :: 19 of 107
            Pseudo Genes (multiple problems)  :: 11 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2228965
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS13 HEBBD 2017-6"
                     /serotype="15"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hebei, Baoding"
                     /collection_date="2017-06"
WGS         JARURT010000001-JARURT010000148
WGS_SCAFLD  NZ_JARURT010000001-NZ_JARURT010000148
//
LOCUS       NZ_JARUVI010000000   2242123 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS128 HBWH 2022-3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUVI000000000
VERSION     NZ_JARUVI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34083535
            Assembly: GCF_029767705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2242123)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2242123)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUVI000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUVI000000000.  This version of the
            project (01) has the accession number NZ_JARUVI010000000, and
            consists of sequences JARUVI010000001-JARUVI010000142.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029767705.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:59:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,254
            CDSs (total)                      :: 2,209
            Genes (coding)                    :: 2,102
            CDSs (with protein)               :: 2,102
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 29 of 107
            Pseudo Genes (incomplete)         :: 76 of 107
            Pseudo Genes (internal stop)      :: 12 of 107
            Pseudo Genes (multiple problems)  :: 8 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242123
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS128 HBWH 2022-3"
                     /serotype="4"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Wuhan"
                     /collection_date="2022-03"
WGS         JARUVI010000001-JARUVI010000142
WGS_SCAFLD  NZ_JARUVI010000001-NZ_JARUVI010000142
//
LOCUS       NZ_JARUSI010000000   2254377 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS45 JXYC 2018-11, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUSI000000000
VERSION     NZ_JARUSI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34073819
            Assembly: GCF_029763495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2254377)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2254377)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUSI000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUSI000000000.  This version of the
            project (01) has the accession number NZ_JARUSI010000000, and
            consists of sequences JARUSI010000001-JARUSI010000142.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029763495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:52:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,270
            CDSs (total)                      :: 2,224
            Genes (coding)                    :: 2,117
            CDSs (with protein)               :: 2,117
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 25 of 107
            Pseudo Genes (incomplete)         :: 77 of 107
            Pseudo Genes (internal stop)      :: 15 of 107
            Pseudo Genes (multiple problems)  :: 8 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254377
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS45 JXYC 2018-11"
                     /serotype="1"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Jiangxi, Yichang"
                     /collection_date="2018-11"
WGS         JARUSI010000001-JARUSI010000142
WGS_SCAFLD  NZ_JARUSI010000001-NZ_JARUSI010000142
//
LOCUS       NZ_JARUTY010000000   2255336 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS90 HBXG 2021-2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUTY000000000
VERSION     NZ_JARUTY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34078133
            Assembly: GCF_029764555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2255336)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2255336)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUTY000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUTY000000000.  This version of the
            project (01) has the accession number NZ_JARUTY010000000, and
            consists of sequences JARUTY010000001-JARUTY010000144.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029764555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:54:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,262
            CDSs (total)                      :: 2,216
            Genes (coding)                    :: 2,106
            CDSs (with protein)               :: 2,106
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 29 of 110
            Pseudo Genes (incomplete)         :: 78 of 110
            Pseudo Genes (internal stop)      :: 13 of 110
            Pseudo Genes (multiple problems)  :: 8 of 110
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255336
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS90 HBXG 2021-2"
                     /serotype="9"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Xiaogan"
                     /collection_date="2021-02"
WGS         JARUTY010000001-JARUTY010000144
WGS_SCAFLD  NZ_JARUTY010000001-NZ_JARUTY010000144
//
LOCUS       NZ_JARUTG010000000   2200790 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS72 HEBBD 2020-11, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUTG000000000
VERSION     NZ_JARUTG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34074026
            Assembly: GCF_029763955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2200790)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2200790)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUTG000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUTG000000000.  This version of the
            project (01) has the accession number NZ_JARUTG010000000, and
            consists of sequences JARUTG010000001-JARUTG010000126.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029763955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:59:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,207
            CDSs (total)                      :: 2,158
            Genes (coding)                    :: 2,054
            CDSs (with protein)               :: 2,054
            Genes (RNA)                       :: 49
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 32 of 104
            Pseudo Genes (incomplete)         :: 74 of 104
            Pseudo Genes (internal stop)      :: 13 of 104
            Pseudo Genes (multiple problems)  :: 13 of 104
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200790
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS72 HEBBD 2020-11"
                     /serotype="13"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hebei, Baoding"
                     /collection_date="2020-11"
WGS         JARUTG010000001-JARUTG010000126
WGS_SCAFLD  NZ_JARUTG010000001-NZ_JARUTG010000126
//
LOCUS       NZ_JARUUH010000000   2245229 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS100 HBWH 2021-3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUH000000000
VERSION     NZ_JARUUH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34082404
            Assembly: GCF_029767285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2245229)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2245229)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUH000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUH000000000.  This version of the
            project (01) has the accession number NZ_JARUUH010000000, and
            consists of sequences JARUUH010000001-JARUUH010000137.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029767285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,260
            CDSs (total)                      :: 2,214
            Genes (coding)                    :: 2,101
            CDSs (with protein)               :: 2,101
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 30 of 113
            Pseudo Genes (incomplete)         :: 81 of 113
            Pseudo Genes (internal stop)      :: 13 of 113
            Pseudo Genes (multiple problems)  :: 9 of 113
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2245229
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS100 HBWH 2021-3"
                     /serotype="13"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Wuhan"
                     /collection_date="2021-03"
WGS         JARUUH010000001-JARUUH010000137
WGS_SCAFLD  NZ_JARUUH010000001-NZ_JARUUH010000137
//
LOCUS       NZ_JBTGTJ010000000   5759137 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP22, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTJ000000000
VERSION     NZ_JBTGTJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325164
            Assembly: GCF_056780665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5759137)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTJ000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTJ000000000.  This version of the
            project (01) has the accession number NZ_JBTGTJ010000000, and
            consists of sequences JBTGTJ010000001-JBTGTJ010000110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:02:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,869
            CDSs (total)                      :: 5,768
            Genes (coding)                    :: 5,581
            CDSs (with protein)               :: 5,581
            Genes (RNA)                       :: 101
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 187
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 61 of 187
            Pseudo Genes (incomplete)         :: 130 of 187
            Pseudo Genes (internal stop)      :: 23 of 187
            Pseudo Genes (multiple problems)  :: 24 of 187
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5759137
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP22"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-12-12"
WGS         JBTGTJ010000001-JBTGTJ010000110
WGS_SCAFLD  NZ_JBTGTJ010000001-NZ_JBTGTJ010000110
//
LOCUS       NZ_JARUUI010000000   2254931 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS101 HBAL 2021-3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUI000000000
VERSION     NZ_JARUUI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34082405
            Assembly: GCF_029766855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2254931)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2254931)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUI000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUI000000000.  This version of the
            project (01) has the accession number NZ_JARUUI010000000, and
            consists of sequences JARUUI010000001-JARUUI010000148.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029766855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,262
            CDSs (total)                      :: 2,217
            Genes (coding)                    :: 2,119
            CDSs (with protein)               :: 2,119
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 28 of 98
            Pseudo Genes (incomplete)         :: 71 of 98
            Pseudo Genes (internal stop)      :: 12 of 98
            Pseudo Genes (multiple problems)  :: 11 of 98
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254931
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS101 HBAL 2021-3"
                     /serotype="13"
                     /isolation_source="trachea"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Anlu"
                     /collection_date="2021-03"
WGS         JARUUI010000001-JARUUI010000148
WGS_SCAFLD  NZ_JARUUI010000001-NZ_JARUUI010000148
//
LOCUS       NZ_JBTGSY010000000   5733790 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP8, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGSY000000000
VERSION     NZ_JBTGSY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325153
            Assembly: GCF_056780865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5733790)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGSY000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGSY000000000.  This version of the
            project (01) has the accession number NZ_JBTGSY010000000, and
            consists of sequences JBTGSY010000001-JBTGSY010000137.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:19:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,815
            CDSs (total)                      :: 5,723
            Genes (coding)                    :: 5,580
            CDSs (with protein)               :: 5,580
            Genes (RNA)                       :: 92
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 77
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 143
            Pseudo Genes (ambiguous residues) :: 0 of 143
            Pseudo Genes (frameshifted)       :: 55 of 143
            Pseudo Genes (incomplete)         :: 91 of 143
            Pseudo Genes (internal stop)      :: 22 of 143
            Pseudo Genes (multiple problems)  :: 22 of 143
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5733790
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP8"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-07-08"
WGS         JBTGSY010000001-JBTGSY010000137
WGS_SCAFLD  NZ_JBTGSY010000001-NZ_JBTGSY010000137
//
LOCUS       NZ_JARUSP010000000   2234374 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS52 HEBBD 2019-10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUSP000000000
VERSION     NZ_JARUSP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34073904
            Assembly: GCF_029763615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2234374)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2234374)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUSP000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUSP000000000.  This version of the
            project (01) has the accession number NZ_JARUSP010000000, and
            consists of sequences JARUSP010000001-JARUSP010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029763615.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:56:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,248
            CDSs (total)                      :: 2,202
            Genes (coding)                    :: 2,090
            CDSs (with protein)               :: 2,090
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 26 of 112
            Pseudo Genes (incomplete)         :: 83 of 112
            Pseudo Genes (internal stop)      :: 14 of 112
            Pseudo Genes (multiple problems)  :: 9 of 112
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234374
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS52 HEBBD 2019-10"
                     /serotype="1"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hebei, Baoding"
                     /collection_date="2019-10"
WGS         JARUSP010000001-JARUSP010000158
WGS_SCAFLD  NZ_JARUSP010000001-NZ_JARUSP010000158
//
LOCUS       NZ_JARUTU010000000   2242578 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS86 HBWH 2021-2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUTU000000000
VERSION     NZ_JARUTU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34077893
            Assembly: GCF_029764445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2242578)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2242578)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUTU000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUTU000000000.  This version of the
            project (01) has the accession number NZ_JARUTU010000000, and
            consists of sequences JARUTU010000001-JARUTU010000134.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029764445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:02:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,250
            CDSs (total)                      :: 2,202
            Genes (coding)                    :: 2,095
            CDSs (with protein)               :: 2,095
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 29 of 107
            Pseudo Genes (incomplete)         :: 76 of 107
            Pseudo Genes (internal stop)      :: 13 of 107
            Pseudo Genes (multiple problems)  :: 9 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242578
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS86 HBWH 2021-2"
                     /serotype="Nontypeable"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Wuhan"
                     /collection_date="2021-02"
WGS         JARUTU010000001-JARUTU010000134
WGS_SCAFLD  NZ_JARUTU010000001-NZ_JARUTU010000134
//
LOCUS       NZ_JARUUK010000000   2228315 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS103 HBQJ 2021-4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUK000000000
VERSION     NZ_JARUUK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34082407
            Assembly: GCF_029766875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2228315)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2228315)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUK000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUK000000000.  This version of the
            project (01) has the accession number NZ_JARUUK010000000, and
            consists of sequences JARUUK010000001-JARUUK010000157.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029766875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:58:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,248
            CDSs (total)                      :: 2,199
            Genes (coding)                    :: 2,081
            CDSs (with protein)               :: 2,081
            Genes (RNA)                       :: 49
            rRNAs                             :: 3, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 26 of 118
            Pseudo Genes (incomplete)         :: 87 of 118
            Pseudo Genes (internal stop)      :: 17 of 118
            Pseudo Genes (multiple problems)  :: 9 of 118
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2228315
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS103 HBQJ 2021-4"
                     /serotype="1"
                     /isolation_source="lung"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Qianjiang"
                     /collection_date="2021-04"
WGS         JARUUK010000001-JARUUK010000157
WGS_SCAFLD  NZ_JARUUK010000001-NZ_JARUUK010000157
//
LOCUS       NZ_JARUTD010000000   2204178 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS68 HBWH 2020-10, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUTD000000000
VERSION     NZ_JARUTD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34073957
            Assembly: GCF_029763915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2204178)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2204178)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUTD000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUTD000000000.  This version of the
            project (01) has the accession number NZ_JARUTD010000000, and
            consists of sequences JARUTD010000001-JARUTD010000175.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029763915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:59:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,238
            CDSs (total)                      :: 2,186
            Genes (coding)                    :: 2,075
            CDSs (with protein)               :: 2,075
            Genes (RNA)                       :: 52
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 27 of 111
            Pseudo Genes (incomplete)         :: 83 of 111
            Pseudo Genes (internal stop)      :: 13 of 111
            Pseudo Genes (multiple problems)  :: 10 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204178
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS68 HBWH 2020-10"
                     /serotype="Nontypeable"
                     /isolation_source="trachea"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Wuhan"
                     /collection_date="2020-10"
WGS         JARUTD010000001-JARUTD010000175
WGS_SCAFLD  NZ_JARUTD010000001-NZ_JARUTD010000175
//
LOCUS       NZ_JARUUQ010000000   2261024 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS109 AHTH 2021-6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUQ000000000
VERSION     NZ_JARUUQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34082717
            Assembly: GCF_029766915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2261024)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2261024)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUQ000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUQ000000000.  This version of the
            project (01) has the accession number NZ_JARUUQ010000000, and
            consists of sequences JARUUQ010000001-JARUUQ010000124.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029766915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:53:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,281
            CDSs (total)                      :: 2,231
            Genes (coding)                    :: 2,132
            CDSs (with protein)               :: 2,132
            Genes (RNA)                       :: 50
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 29 of 99
            Pseudo Genes (incomplete)         :: 73 of 99
            Pseudo Genes (internal stop)      :: 11 of 99
            Pseudo Genes (multiple problems)  :: 12 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261024
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS109 AHTH 2021-6"
                     /serotype="7"
                     /isolation_source="trachea"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Anhui, Taihu"
                     /collection_date="2021-06"
WGS         JARUUQ010000001-JARUUQ010000124
WGS_SCAFLD  NZ_JARUUQ010000001-NZ_JARUUQ010000124
//
LOCUS       NZ_JBTGTI010000000   5421057 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP21.0, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTGTI000000000
VERSION     NZ_JBTGTI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325163
            Assembly: GCF_056780685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5421057)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTI000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTI000000000.  This version of the
            project (01) has the accession number NZ_JBTGTI010000000, and
            consists of sequences JBTGTI010000001-JBTGTI010000070.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:11:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,414
            CDSs (total)                      :: 5,307
            Genes (coding)                    :: 5,135
            CDSs (with protein)               :: 5,135
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 172
            CDSs (without protein)            :: 172
            Pseudo Genes (ambiguous residues) :: 0 of 172
            Pseudo Genes (frameshifted)       :: 64 of 172
            Pseudo Genes (incomplete)         :: 114 of 172
            Pseudo Genes (internal stop)      :: 28 of 172
            Pseudo Genes (multiple problems)  :: 32 of 172
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5421057
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP21.0"
                     /isolation_source="wound exudate"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-07-28"
WGS         JBTGTI010000001-JBTGTI010000070
WGS_SCAFLD  NZ_JBTGTI010000001-NZ_JBTGTI010000070
//
LOCUS       NZ_JARUUP010000000   2252302 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glaesserella parasuis strain GPS108 HBWH 2021-6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JARUUP000000000
VERSION     NZ_JARUUP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34082714
            Assembly: GCF_029767395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glaesserella parasuis (Haemophilus parasuis)
  ORGANISM  Glaesserella parasuis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Glaesserella.
REFERENCE   1  (bases 1 to 2252302)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Whole-genome sequence analyses of Chinese Glaesserella parasuis
            isolates reveal extensive genomic variation, virulence genes and
            antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2252302)
  AUTHORS   He,Q. and Sun,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Hongshan District,
            Wuhan, Hubei 430000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARUUP000000000.1.
            The Glaesserella parasuis whole genome shotgun (WGS) project has
            the project accession NZ_JARUUP000000000.  This version of the
            project (01) has the accession number NZ_JARUUP010000000, and
            consists of sequences JARUUP010000001-JARUUP010000140.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 10.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029767395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:21:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,269
            CDSs (total)                      :: 2,222
            Genes (coding)                    :: 2,109
            CDSs (with protein)               :: 2,109
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 29 of 113
            Pseudo Genes (incomplete)         :: 83 of 113
            Pseudo Genes (internal stop)      :: 12 of 113
            Pseudo Genes (multiple problems)  :: 9 of 113
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252302
                     /organism="Glaesserella parasuis"
                     /mol_type="genomic DNA"
                     /strain="GPS108 HBWH 2021-6"
                     /serotype="Nontypeable"
                     /isolation_source="trachea"
                     /host="pig"
                     /db_xref="taxon:738"
                     /geo_loc_name="China:Hubei, Wuhan"
                     /collection_date="2021-06"
WGS         JARUUP010000001-JARUUP010000140
WGS_SCAFLD  NZ_JARUUP010000001-NZ_JARUUP010000140
//
LOCUS       NZ_JBTGTA010000000   5275280 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTA000000000
VERSION     NZ_JBTGTA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325155
            Assembly: GCF_056780825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5275280)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTA000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTA000000000.  This version of the
            project (01) has the accession number NZ_JBTGTA010000000, and
            consists of sequences JBTGTA010000001-JBTGTA010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:14:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,221
            CDSs (total)                      :: 5,114
            Genes (coding)                    :: 4,998
            CDSs (with protein)               :: 4,998
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 2, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 42 of 116
            Pseudo Genes (incomplete)         :: 67 of 116
            Pseudo Genes (internal stop)      :: 24 of 116
            Pseudo Genes (multiple problems)  :: 15 of 116
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5275280
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP13"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-10-19"
WGS         JBTGTA010000001-JBTGTA010000040
WGS_SCAFLD  NZ_JBTGTA010000001-NZ_JBTGTA010000040
//
LOCUS       NZ_JAFLQS010000000   5248910 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella aerogenes strain 2019-1418, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFLQS000000000
VERSION     NZ_JAFLQS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18106186
            Assembly: GCF_049058085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella aerogenes
  ORGANISM  Klebsiella aerogenes
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella.
REFERENCE   1  (bases 1 to 5248910)
  AUTHORS   Hakonsholm,F.
  TITLE     Sequencing of marine Klebsiella & Raoultella
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5248910)
  AUTHORS   Hakonsholm,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2021) FRES, IMR, P.O. Box 1870 Nordnes, Bergen
            5089, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFLQS000000000.1.
            The Klebsiella aerogenes whole genome shotgun (WGS) project has the
            project accession NZ_JAFLQS000000000.  This version of the project
            (01) has the accession number NZ_JAFLQS010000000, and consists of
            sequences JAFLQS010000001-JAFLQS010000031.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049058085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:06:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,030
            CDSs (total)                      :: 4,941
            Genes (coding)                    :: 4,858
            CDSs (with protein)               :: 4,858
            Genes (RNA)                       :: 89
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 34 of 83
            Pseudo Genes (incomplete)         :: 48 of 83
            Pseudo Genes (internal stop)      :: 9 of 83
            Pseudo Genes (multiple problems)  :: 8 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5248910
                     /organism="Klebsiella aerogenes"
                     /mol_type="genomic DNA"
                     /strain="2019-1418"
                     /host="Sediments"
                     /db_xref="taxon:548"
                     /geo_loc_name="Norway"
                     /collection_date="2019"
WGS         JAFLQS010000001-JAFLQS010000031
WGS_SCAFLD  NZ_JAFLQS010000001-NZ_JAFLQS010000031
//
LOCUS       NZ_JBTGSW010000000   5684654 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella quasipneumoniae strain YKP5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTGSW000000000
VERSION     NZ_JBTGSW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325151
            Assembly: GCF_056780905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5684654)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGSW000000000.1.
            The Klebsiella quasipneumoniae whole genome shotgun (WGS) project
            has the project accession NZ_JBTGSW000000000.  This version of the
            project (01) has the accession number NZ_JBTGSW010000000, and
            consists of sequences JBTGSW010000001-JBTGSW010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780905.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:28:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,642
            CDSs (total)                      :: 5,529
            Genes (coding)                    :: 5,394
            CDSs (with protein)               :: 5,394
            Genes (RNA)                       :: 113
            rRNAs                             :: 5, 4, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 4, 7 (16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 49 of 135
            Pseudo Genes (incomplete)         :: 95 of 135
            Pseudo Genes (internal stop)      :: 17 of 135
            Pseudo Genes (multiple problems)  :: 20 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5684654
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP5"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-10-11"
WGS         JBTGSW010000001-JBTGSW010000060
WGS_SCAFLD  NZ_JBTGSW010000001-NZ_JBTGSW010000060
//
LOCUS       NZ_JBTGTM010000000   5644530 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP26, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTM000000000
VERSION     NZ_JBTGTM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325167
            Assembly: GCF_056780625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5644530)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTM000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTM000000000.  This version of the
            project (01) has the accession number NZ_JBTGTM010000000, and
            consists of sequences JBTGTM010000001-JBTGTM010000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780625.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:22:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,581
            CDSs (total)                      :: 5,480
            Genes (coding)                    :: 5,336
            CDSs (with protein)               :: 5,336
            Genes (RNA)                       :: 101
            rRNAs                             :: 5, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 5 (16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 64 of 144
            Pseudo Genes (incomplete)         :: 86 of 144
            Pseudo Genes (internal stop)      :: 29 of 144
            Pseudo Genes (multiple problems)  :: 27 of 144
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5644530
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP26"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-01-14"
WGS         JBTGTM010000001-JBTGTM010000039
WGS_SCAFLD  NZ_JBTGTM010000001-NZ_JBTGTM010000039
//
LOCUS       NZ_CBBCWZ010000000   3340626 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Hyphomonas sp. isolate
            PELAGICS-MAG-m2-bin113035-MEDDH-LM-20oct20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBCWZ000000000
VERSION     NZ_CBBCWZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460684
            Assembly: GCF_964856175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Hyphomonas sp. (freshwater metagenome)
  ORGANISM  Hyphomonas sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomonadales; Hyphomonadaceae; Hyphomonas.
REFERENCE   1  (bases 1 to 3340626)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBCWZ000000000.1.
            The Hyphomonas sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBCWZ000000000.  This version of the project
            (01) has the accession number NZ_CBBCWZ010000000, and consists of
            sequences CBBCWZ010000001-CBBCWZ010000080.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964856175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:47:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,348
            CDSs (total)                      :: 3,298
            Genes (coding)                    :: 3,266
            CDSs (with protein)               :: 3,266
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 3 of 32
            Pseudo Genes (incomplete)         :: 23 of 32
            Pseudo Genes (internal stop)      :: 7 of 32
            Pseudo Genes (multiple problems)  :: 1 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3340626
                     /organism="Hyphomonas sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin113035-MEDDH-LM-20oct20."
                     /isolation_source="Medard lake"
                     /db_xref="taxon:87"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-10-20"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBCWZ010000001-CBBCWZ010000080
WGS_SCAFLD  NZ_CBBCWZ010000001-NZ_CBBCWZ010000080
//
LOCUS       NZ_JBTGTG010000000   5498238 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP19, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTG000000000
VERSION     NZ_JBTGTG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325161
            Assembly: GCF_056780725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5498238)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTG000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTG000000000.  This version of the
            project (01) has the accession number NZ_JBTGTG010000000, and
            consists of sequences JBTGTG010000001-JBTGTG010000059.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,531
            CDSs (total)                      :: 5,429
            Genes (coding)                    :: 5,302
            CDSs (with protein)               :: 5,302
            Genes (RNA)                       :: 102
            rRNAs                             :: 8, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 38 of 127
            Pseudo Genes (incomplete)         :: 85 of 127
            Pseudo Genes (internal stop)      :: 14 of 127
            Pseudo Genes (multiple problems)  :: 9 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5498238
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP19"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-05-20"
WGS         JBTGTG010000001-JBTGTG010000059
WGS_SCAFLD  NZ_JBTGTG010000001-NZ_JBTGTG010000059
//
LOCUS       NZ_JBTGSZ010000000   5711567 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGSZ000000000
VERSION     NZ_JBTGSZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325154
            Assembly: GCF_056780845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5711567)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGSZ000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGSZ000000000.  This version of the
            project (01) has the accession number NZ_JBTGSZ010000000, and
            consists of sequences JBTGSZ010000001-JBTGSZ010000115.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:12:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,779
            CDSs (total)                      :: 5,689
            Genes (coding)                    :: 5,555
            CDSs (with protein)               :: 5,555
            Genes (RNA)                       :: 90
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 75
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 60 of 134
            Pseudo Genes (incomplete)         :: 81 of 134
            Pseudo Genes (internal stop)      :: 24 of 134
            Pseudo Genes (multiple problems)  :: 28 of 134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5711567
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP12"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-02-22"
WGS         JBTGSZ010000001-JBTGSZ010000115
WGS_SCAFLD  NZ_JBTGSZ010000001-NZ_JBTGSZ010000115
//
LOCUS       NZ_JBTGTC010000000   5689680 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP15, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTC000000000
VERSION     NZ_JBTGTC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325157
            Assembly: GCF_056780785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5689680)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTC000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTC000000000.  This version of the
            project (01) has the accession number NZ_JBTGTC010000000, and
            consists of sequences JBTGTC010000001-JBTGTC010000105.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780785.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:18:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,811
            CDSs (total)                      :: 5,710
            Genes (coding)                    :: 5,531
            CDSs (with protein)               :: 5,531
            Genes (RNA)                       :: 101
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 59 of 179
            Pseudo Genes (incomplete)         :: 124 of 179
            Pseudo Genes (internal stop)      :: 22 of 179
            Pseudo Genes (multiple problems)  :: 24 of 179
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5689680
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP15"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-10-17"
WGS         JBTGTC010000001-JBTGTC010000105
WGS_SCAFLD  NZ_JBTGTC010000001-NZ_JBTGTC010000105
//
LOCUS       NZ_JBTGSV010000000   5758434 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGSV000000000
VERSION     NZ_JBTGSV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325150
            Assembly: GCF_056780925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5758434)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGSV000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGSV000000000.  This version of the
            project (01) has the accession number NZ_JBTGSV010000000, and
            consists of sequences JBTGSV010000001-JBTGSV010000117.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:21:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,874
            CDSs (total)                      :: 5,774
            Genes (coding)                    :: 5,580
            CDSs (with protein)               :: 5,580
            Genes (RNA)                       :: 100
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 62 of 194
            Pseudo Genes (incomplete)         :: 136 of 194
            Pseudo Genes (internal stop)      :: 24 of 194
            Pseudo Genes (multiple problems)  :: 25 of 194
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5758434
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP4"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-09-16"
WGS         JBTGSV010000001-JBTGSV010000117
WGS_SCAFLD  NZ_JBTGSV010000001-NZ_JBTGSV010000117
//
LOCUS       NZ_JBNBOD010000000   3780637 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Glutamicibacter soli strain CLAM16, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBNBOD000000000
VERSION     NZ_JBNBOD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47772559
            Assembly: GCF_049725225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Glutamicibacter soli
  ORGANISM  Glutamicibacter soli
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Micrococcaceae; Glutamicibacter.
REFERENCE   1  (bases 1 to 3780637)
  AUTHORS   Samson,J.S., Murphy,S., Rowley,D.C. and Gomez-Chiarri,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2025) Fisheries, Animal, and Veterinary Sciences,
            University of Rhode Island, 120 Flagg Rd. CBLS, Kingston, RI 02881,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNBOD000000000.1.
            The Glutamicibacter soli whole genome shotgun (WGS) project has the
            project accession NZ_JBNBOD000000000.  This version of the project
            (01) has the accession number NZ_JBNBOD010000000, and consists of
            sequences JBNBOD010000001-JBNBOD010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2025
            Assembly Method        :: SPAdes v. JAN-2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60.97x
            Sequencing Technology  :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049725225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:17:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,521
            CDSs (total)                      :: 3,440
            Genes (coding)                    :: 3,404
            CDSs (with protein)               :: 3,404
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 22 of 36
            Pseudo Genes (internal stop)      :: 7 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3780637
                     /organism="Glutamicibacter soli"
                     /mol_type="genomic DNA"
                     /strain="CLAM16"
                     /isolation_source="Larvae"
                     /host="Mercenaria mercenaria"
                     /db_xref="taxon:453836"
                     /lab_host="Marta Gomez-Chiarri"
                     /geo_loc_name="USA: Northeast"
                     /altitude="0 m"
                     /collection_date="2023"
                     /collected_by="Jaypee Samson"
                     /identified_by="Jaypee Samson"
WGS         JBNBOD010000001-JBNBOD010000005
WGS_SCAFLD  NZ_JBNBOD010000001-NZ_JBNBOD010000005
//
LOCUS       NZ_JBTGSU010000000   5754260 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGSU000000000
VERSION     NZ_JBTGSU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325149
            Assembly: GCF_056780945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5754260)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGSU000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGSU000000000.  This version of the
            project (01) has the accession number NZ_JBTGSU010000000, and
            consists of sequences JBTGSU010000001-JBTGSU010000118.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:20:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,865
            CDSs (total)                      :: 5,764
            Genes (coding)                    :: 5,575
            CDSs (with protein)               :: 5,575
            Genes (RNA)                       :: 101
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 189
            CDSs (without protein)            :: 189
            Pseudo Genes (ambiguous residues) :: 0 of 189
            Pseudo Genes (frameshifted)       :: 62 of 189
            Pseudo Genes (incomplete)         :: 132 of 189
            Pseudo Genes (internal stop)      :: 24 of 189
            Pseudo Genes (multiple problems)  :: 26 of 189
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5754260
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP3"
                     /isolation_source="catheter"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-09-09"
WGS         JBTGSU010000001-JBTGSU010000118
WGS_SCAFLD  NZ_JBTGSU010000001-NZ_JBTGSU010000118
//
LOCUS       NZ_JBTGTK010000000   5758214 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP23, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTK000000000
VERSION     NZ_JBTGTK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325165
            Assembly: GCF_056780645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5758214)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTK000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTK000000000.  This version of the
            project (01) has the accession number NZ_JBTGTK010000000, and
            consists of sequences JBTGTK010000001-JBTGTK010000109.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:19:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,867
            CDSs (total)                      :: 5,766
            Genes (coding)                    :: 5,577
            CDSs (with protein)               :: 5,577
            Genes (RNA)                       :: 101
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 189
            CDSs (without protein)            :: 189
            Pseudo Genes (ambiguous residues) :: 0 of 189
            Pseudo Genes (frameshifted)       :: 62 of 189
            Pseudo Genes (incomplete)         :: 130 of 189
            Pseudo Genes (internal stop)      :: 24 of 189
            Pseudo Genes (multiple problems)  :: 24 of 189
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5758214
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP23"
                     /isolation_source="sterile body fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-12-19"
WGS         JBTGTK010000001-JBTGTK010000109
WGS_SCAFLD  NZ_JBTGTK010000001-NZ_JBTGTK010000109
//
LOCUS       NZ_JBTGSX010000000   5725150 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella quasipneumoniae strain YKP6.0, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTGSX000000000
VERSION     NZ_JBTGSX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325152
            Assembly: GCF_056780885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5725150)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGSX000000000.1.
            The Klebsiella quasipneumoniae whole genome shotgun (WGS) project
            has the project accession NZ_JBTGSX000000000.  This version of the
            project (01) has the accession number NZ_JBTGSX010000000, and
            consists of sequences JBTGSX010000001-JBTGSX010000122.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:18:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,728
            CDSs (total)                      :: 5,621
            Genes (coding)                    :: 5,418
            CDSs (with protein)               :: 5,418
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 4, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 4, 5 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 203
            CDSs (without protein)            :: 203
            Pseudo Genes (ambiguous residues) :: 0 of 203
            Pseudo Genes (frameshifted)       :: 59 of 203
            Pseudo Genes (incomplete)         :: 154 of 203
            Pseudo Genes (internal stop)      :: 32 of 203
            Pseudo Genes (multiple problems)  :: 33 of 203
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5725150
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP6.0"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-10-31"
WGS         JBTGSX010000001-JBTGSX010000122
WGS_SCAFLD  NZ_JBTGSX010000001-NZ_JBTGSX010000122
//
LOCUS       NZ_JBTGTD010000000   5275236 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP16, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTD000000000
VERSION     NZ_JBTGTD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325158
            Assembly: GCF_056780765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5275236)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTD000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTD000000000.  This version of the
            project (01) has the accession number NZ_JBTGTD010000000, and
            consists of sequences JBTGTD010000001-JBTGTD010000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:14:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,219
            CDSs (total)                      :: 5,112
            Genes (coding)                    :: 4,995
            CDSs (with protein)               :: 4,995
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 2, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 42 of 117
            Pseudo Genes (incomplete)         :: 68 of 117
            Pseudo Genes (internal stop)      :: 24 of 117
            Pseudo Genes (multiple problems)  :: 15 of 117
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5275236
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP16"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-12-18"
WGS         JBTGTD010000001-JBTGTD010000039
WGS_SCAFLD  NZ_JBTGTD010000001-NZ_JBTGTD010000039
//
LOCUS       NZ_JBMHHX010000000   8759053 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Kitasatospora acidiphila strain MAA18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMHHX000000000
VERSION     NZ_JBMHHX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34112303
            Assembly: GCF_049739445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Kitasatospora acidiphila
  ORGANISM  Kitasatospora acidiphila
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Kitasatospora.
REFERENCE   1  (bases 1 to 8759053)
  AUTHORS   Deangelis,K.M. PhD.
  TITLE     Using genomics to understand microbial adaptation to soil warming
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8759053)
  AUTHORS   Deangelis,K., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Ng,V., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2024) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMHHX000000000.1.
            The Kitasatospora acidiphila whole genome shotgun (WGS) project has
            the project accession NZ_JBMHHX000000000.  This version of the
            project (01) has the accession number NZ_JBMHHX010000000, and
            consists of sequences JBMHHX010000001-JBMHHX010000081.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 171.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049739445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:38:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,881
            CDSs (total)                      :: 7,790
            Genes (coding)                    :: 7,596
            CDSs (with protein)               :: 7,596
            Genes (RNA)                       :: 91
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 43 of 194
            Pseudo Genes (incomplete)         :: 177 of 194
            Pseudo Genes (internal stop)      :: 5 of 194
            Pseudo Genes (multiple problems)  :: 30 of 194
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8759053
                     /organism="Kitasatospora acidiphila"
                     /mol_type="genomic DNA"
                     /strain="MAA18"
                     /db_xref="taxon:2567942"
WGS         JBMHHX010000001-JBMHHX010000081
WGS_SCAFLD  NZ_JBMHHX010000001-NZ_JBMHHX010000081
//
LOCUS       NZ_JBTGTH010000000   5612054 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP20, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTH000000000
VERSION     NZ_JBTGTH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325162
            Assembly: GCF_056780705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5612054)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTH000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTH000000000.  This version of the
            project (01) has the accession number NZ_JBTGTH010000000, and
            consists of sequences JBTGTH010000001-JBTGTH010000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780705.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:14:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,575
            CDSs (total)                      :: 5,471
            Genes (coding)                    :: 5,331
            CDSs (with protein)               :: 5,331
            Genes (RNA)                       :: 104
            rRNAs                             :: 7, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 2, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 56 of 140
            Pseudo Genes (incomplete)         :: 86 of 140
            Pseudo Genes (internal stop)      :: 15 of 140
            Pseudo Genes (multiple problems)  :: 14 of 140
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5612054
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP20"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-12-20"
WGS         JBTGTH010000001-JBTGTH010000066
WGS_SCAFLD  NZ_JBTGTH010000001-NZ_JBTGTH010000066
//
LOCUS       NZ_JBTGTB010000000   5845364 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP14.0, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTGTB000000000
VERSION     NZ_JBTGTB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325156
            Assembly: GCF_056780805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5845364)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTB000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTB000000000.  This version of the
            project (01) has the accession number NZ_JBTGTB010000000, and
            consists of sequences JBTGTB010000001-JBTGTB010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:21:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,762
            CDSs (total)                      :: 5,659
            Genes (coding)                    :: 5,509
            CDSs (with protein)               :: 5,509
            Genes (RNA)                       :: 103
            rRNAs                             :: 6, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 1, 2, 4 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 55 of 150
            Pseudo Genes (incomplete)         :: 101 of 150
            Pseudo Genes (internal stop)      :: 25 of 150
            Pseudo Genes (multiple problems)  :: 22 of 150
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5845364
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP14.0"
                     /isolation_source="Ascites"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-10-09"
WGS         JBTGTB010000001-JBTGTB010000060
WGS_SCAFLD  NZ_JBTGTB010000001-NZ_JBTGTB010000060
//
LOCUS       NZ_JBTGTN010000000   5424453 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP29, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTN000000000
VERSION     NZ_JBTGTN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325168
            Assembly: GCF_056780605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5424453)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTN000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTN000000000.  This version of the
            project (01) has the accession number NZ_JBTGTN010000000, and
            consists of sequences JBTGTN010000001-JBTGTN010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780605.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:11:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,394
            CDSs (total)                      :: 5,284
            Genes (coding)                    :: 5,150
            CDSs (with protein)               :: 5,150
            Genes (RNA)                       :: 110
            rRNAs                             :: 5, 3, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 1, 3, 6 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 51 of 134
            Pseudo Genes (incomplete)         :: 82 of 134
            Pseudo Genes (internal stop)      :: 22 of 134
            Pseudo Genes (multiple problems)  :: 16 of 134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5424453
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP29"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-02-12"
WGS         JBTGTN010000001-JBTGTN010000043
WGS_SCAFLD  NZ_JBTGTN010000001-NZ_JBTGTN010000043
//
LOCUS       NZ_JBTGTE010000000   5819621 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP17, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTE000000000
VERSION     NZ_JBTGTE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325159
            Assembly: GCF_056780745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5819621)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTE000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTE000000000.  This version of the
            project (01) has the accession number NZ_JBTGTE010000000, and
            consists of sequences JBTGTE010000001-JBTGTE010000124.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:22:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,971
            CDSs (total)                      :: 5,869
            Genes (coding)                    :: 5,664
            CDSs (with protein)               :: 5,664
            Genes (RNA)                       :: 102
            rRNAs                             :: 8, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 205
            CDSs (without protein)            :: 205
            Pseudo Genes (ambiguous residues) :: 0 of 205
            Pseudo Genes (frameshifted)       :: 62 of 205
            Pseudo Genes (incomplete)         :: 148 of 205
            Pseudo Genes (internal stop)      :: 23 of 205
            Pseudo Genes (multiple problems)  :: 25 of 205
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5819621
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP17"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-01-02"
WGS         JBTGTE010000001-JBTGTE010000124
WGS_SCAFLD  NZ_JBTGTE010000001-NZ_JBTGTE010000124
//
LOCUS       NZ_JBTGTP010000000   5566839 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP35, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTP000000000
VERSION     NZ_JBTGTP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325170
            Assembly: GCF_056780585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5566839)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTP000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTP000000000.  This version of the
            project (01) has the accession number NZ_JBTGTP010000000, and
            consists of sequences JBTGTP010000001-JBTGTP010000095.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780585.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:02:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,596
            CDSs (total)                      :: 5,485
            Genes (coding)                    :: 5,304
            CDSs (with protein)               :: 5,304
            Genes (RNA)                       :: 111
            rRNAs                             :: 7, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 1, 3, 5 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 181
            CDSs (without protein)            :: 181
            Pseudo Genes (ambiguous residues) :: 0 of 181
            Pseudo Genes (frameshifted)       :: 62 of 181
            Pseudo Genes (incomplete)         :: 126 of 181
            Pseudo Genes (internal stop)      :: 21 of 181
            Pseudo Genes (multiple problems)  :: 25 of 181
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5566839
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP35"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-08-12"
WGS         JBTGTP010000001-JBTGTP010000095
WGS_SCAFLD  NZ_JBTGTP010000001-NZ_JBTGTP010000095
//
LOCUS       NZ_JBTKVW010000000   5900052 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain HKP11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTKVW000000000
VERSION     NZ_JBTKVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54317903
            Assembly: GCF_056780545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5900052)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-DEC-2025) Department of Clinical Laboratory, Xiangya
            Hospital, Central South University, 87 Xiangya Road, Changsha
            410000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTKVW000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTKVW000000000.  This version of the
            project (01) has the accession number NZ_JBTKVW010000000, and
            consists of sequences JBTKVW010000001-JBTKVW010000007.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:52:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,945
            CDSs (total)                      :: 5,821
            Genes (coding)                    :: 5,648
            CDSs (with protein)               :: 5,648
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 173
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 57 of 173
            Pseudo Genes (incomplete)         :: 124 of 173
            Pseudo Genes (internal stop)      :: 23 of 173
            Pseudo Genes (multiple problems)  :: 27 of 173
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5900052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="HKP11"
                     /isolation_source="Respiratory secretion"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2017-11-20"
WGS         JBTKVW010000001-JBTKVW010000007
WGS_SCAFLD  NZ_CM165559
WGS_SCAFLD  NZ_JBTKVW010000002-NZ_JBTKVW010000007
//
LOCUS       NZ_JBTGST010000000   5489201 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGST000000000
VERSION     NZ_JBTGST000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325148
            Assembly: GCF_056780965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5489201)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGST000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGST000000000.  This version of the
            project (01) has the accession number NZ_JBTGST010000000, and
            consists of sequences JBTGST010000001-JBTGST010000059.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:14:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,394
            CDSs (total)                      :: 5,286
            Genes (coding)                    :: 5,138
            CDSs (with protein)               :: 5,138
            Genes (RNA)                       :: 108
            rRNAs                             :: 6, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 1, 4, 6 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 55 of 148
            Pseudo Genes (incomplete)         :: 96 of 148
            Pseudo Genes (internal stop)      :: 20 of 148
            Pseudo Genes (multiple problems)  :: 19 of 148
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5489201
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP2"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-05-07"
WGS         JBTGST010000001-JBTGST010000059
WGS_SCAFLD  NZ_JBTGST010000001-NZ_JBTGST010000059
//
LOCUS       NZ_JBTGTQ010000000   5504247 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP38, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGTQ000000000
VERSION     NZ_JBTGTQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325171
            Assembly: GCF_056780565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5504247)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGTQ000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGTQ000000000.  This version of the
            project (01) has the accession number NZ_JBTGTQ010000000, and
            consists of sequences JBTGTQ010000001-JBTGTQ010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:14:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,474
            CDSs (total)                      :: 5,367
            Genes (coding)                    :: 5,238
            CDSs (with protein)               :: 5,238
            Genes (RNA)                       :: 107
            rRNAs                             :: 6, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 1, 4, 6 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 48 of 129
            Pseudo Genes (incomplete)         :: 84 of 129
            Pseudo Genes (internal stop)      :: 13 of 129
            Pseudo Genes (multiple problems)  :: 14 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5504247
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP38"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2020-06-10"
WGS         JBTGTQ010000001-JBTGTQ010000047
WGS_SCAFLD  NZ_JBTGTQ010000001-NZ_JBTGTQ010000047
//
LOCUS       NZ_JBTGSS010000000   5705797 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Klebsiella pneumoniae strain YKP1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBTGSS000000000
VERSION     NZ_JBTGSS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54325147
            Assembly: GCF_056780985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella
            pneumoniae complex.
REFERENCE   1  (bases 1 to 5705797)
  AUTHORS   Liu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2025) Department of Clinical Laboratory, The
            Central Hospital of Yongzhou, 396 Yiyun Road, Yongzhou 425000,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTGSS000000000.1.
            The Klebsiella pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBTGSS000000000.  This version of the
            project (01) has the accession number NZ_JBTGSS010000000, and
            consists of sequences JBTGSS010000001-JBTGSS010000101.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98%x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:20:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,823
            CDSs (total)                      :: 5,722
            Genes (coding)                    :: 5,534
            CDSs (with protein)               :: 5,534
            Genes (RNA)                       :: 101
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 3, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 188
            CDSs (without protein)            :: 188
            Pseudo Genes (ambiguous residues) :: 0 of 188
            Pseudo Genes (frameshifted)       :: 61 of 188
            Pseudo Genes (incomplete)         :: 130 of 188
            Pseudo Genes (internal stop)      :: 28 of 188
            Pseudo Genes (multiple problems)  :: 28 of 188
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5705797
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YKP1"
                     /isolation_source="pus"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /geo_loc_name="China: Hunan"
                     /collection_date="2021-01-26"
WGS         JBTGSS010000001-JBTGSS010000101
WGS_SCAFLD  NZ_JBTGSS010000001-NZ_JBTGSS010000101
//
LOCUS       NZ_MKGB01000000      1992535 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Latilactobacillus sakei strain RI-409, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MKGB00000000
VERSION     NZ_MKGB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05717731
            Assembly: GCF_001981795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Latilactobacillus sakei
  ORGANISM  Latilactobacillus sakei
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Latilactobacillus.
REFERENCE   1  (bases 1 to 1992535)
  AUTHORS   Inglin,R.C., Meile,L. and Stevens,M.J.A.
  TITLE     Draft Genome Sequences of 43 Lactobacillus Strains from the Species
            L. curvatus, L. fermentum, L. paracasei, L. plantarum, L.
            rhamnosus, and L. sakei, Isolated from Food Products
  JOURNAL   Genome Announc 5 (30), e00632-17 (2017)
   PUBMED   28751390
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992535)
  AUTHORS   Inglin,R.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-SEP-2016) D-HEST, ETH Zurich, Schmelzbergstrasse 7,
            Zurich 8092, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MKGB00000000.1.
            The Latilactobacillus sakei whole genome shotgun (WGS) project has
            the project accession NZ_MKGB00000000.  This version of the project
            (01) has the accession number NZ_MKGB01000000, and consists of
            sequences MKGB01000001-MKGB01000067.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001981795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,056
            CDSs (total)                      :: 2,005
            Genes (coding)                    :: 1,952
            CDSs (with protein)               :: 1,952
            Genes (RNA)                       :: 51
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 22 of 53
            Pseudo Genes (incomplete)         :: 28 of 53
            Pseudo Genes (internal stop)      :: 8 of 53
            Pseudo Genes (multiple problems)  :: 5 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992535
                     /organism="Latilactobacillus sakei"
                     /mol_type="genomic DNA"
                     /strain="RI-409"
                     /db_xref="taxon:1599"
WGS         MKGB01000001-MKGB01000067
WGS_SCAFLD  NZ_MKGB01000001-NZ_MKGB01000067
//
LOCUS       NZ_LBAK01000000      3437414 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Legionella pneumophila strain WX2011046, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LBAK00000000
VERSION     NZ_LBAK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03486847
            Assembly: GCF_001582635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Legionella pneumophila
  ORGANISM  Legionella pneumophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Legionellales; Legionellaceae; Legionella.
REFERENCE   1  (bases 1 to 3437414)
  AUTHORS   Qin,T., Zhang,W., Liu,W., Zhou,H., Ren,H., Shao,Z., Lan,R. and
            Xu,J.
  TITLE     Population structure and minimum core genome typing of Legionella
            pneumophila
  JOURNAL   Sci Rep 6, 21356 (2016)
   PUBMED   26888563
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3437414)
  AUTHORS   Qin,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2015) Department of Respiratory Diseases,
            National Institute for Communicable Disease Control and Prevention,
            Chinese Center for Disease Control and Prevention, Changbai Road,
            Beijing 102206, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LBAK00000000.1.
            The Legionella pneumophila whole genome shotgun (WGS) project has
            the project accession NZ_LBAK00000000.  This version of the project
            (01) has the accession number NZ_LBAK01000000, and consists of
            sequences LBAK01000001-LBAK01000029.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001582635.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,112
            CDSs (total)                      :: 3,064
            Genes (coding)                    :: 3,037
            CDSs (with protein)               :: 3,037
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 5 of 27
            Pseudo Genes (incomplete)         :: 23 of 27
            Pseudo Genes (internal stop)      :: 3 of 27
            Pseudo Genes (multiple problems)  :: 3 of 27
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3437414
                     /organism="Legionella pneumophila"
                     /mol_type="genomic DNA"
                     /strain="WX2011046"
                     /isolation_source="Cooling tower water"
                     /db_xref="taxon:446"
                     /geo_loc_name="China: Wuxi"
                     /collection_date="2010"
                     /collected_by="National Institute for Communicable Disease
                     Control and Prevention, Chinese Center for Disease Control
                     and Prevention"
WGS         LBAK01000001-LBAK01000029
WGS_SCAFLD  NZ_KQ973526
WGS_SCAFLD  NZ_LBAK01000001
WGS_SCAFLD  NZ_LBAK01000005-NZ_LBAK01000029
//
LOCUS       NZ_AZEK01000000      1828376 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactobacillus helveticus DSM 20075 = CGMCC 1.1877, whole genome
            shotgun sequencing project.
ACCESSION   NZ_AZEK00000000
VERSION     NZ_AZEK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02369370
            Assembly: GCF_001434945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactobacillus helveticus DSM 20075 = CGMCC 1.1877
  ORGANISM  Lactobacillus helveticus DSM 20075 = CGMCC 1.1877
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactobacillus.
REFERENCE   1  (bases 1 to 1828376)
  AUTHORS   Sun,Z., Harris,H.M., McCann,A., Guo,C., Argimon,S., Zhang,W.,
            Yang,X., Jeffery,I.B., Cooney,J.C., Kagawa,T.F., Liu,W., Song,Y.,
            Salvetti,E., Wrobel,A., Rasinkangas,P., Parkhill,J., Rea,M.C.,
            O'Sullivan,O., Ritari,J., Douillard,F.P., Paul Ross,R., Yang,R.,
            Briner,A.E., Felis,G.E., de Vos,W.M., Barrangou,R.,
            Klaenhammer,T.R., Caufield,P.W., Cui,Y., Zhang,H. and O'Toole,P.W.
  TITLE     Expanding the biotechnology potential of lactobacilli through
            comparative genomics of 213 strains and associated genera
  JOURNAL   Nat Commun 6, 8322 (2015)
   PUBMED   26415554
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1828376)
  AUTHORS   Sun,Z., Harris,H.M., Argimon,S., Zhang,W., McCann,A., Jeffery,I.B.,
            Yang,X., Guo,C., Liu,W., Song,Y., Yang,R., Cui,Y., Zhang,H. and
            O'Toole,P.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2014) Inner Mongolia Agricultural University, Key
            Laboratory of Dairy Biotechnology and Engineering, Education
            Ministry of China, Zhaowuda Road, No. 306, Hohhot, Inner Mongolia
            010018, The People's Republic of China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AZEK00000000.1.
            The Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 whole genome
            shotgun (WGS) project has the project accession NZ_AZEK00000000.
            This version of the project (01) has the accession number
            NZ_AZEK01000000, and consists of sequences
            AZEK01000001-AZEK01000257.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2
            Genome Coverage       :: 100x
            Sequencing Technology :: Illumina MiSeq; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001434945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,984
            CDSs (total)                      :: 1,934
            Genes (coding)                    :: 1,706
            CDSs (with protein)               :: 1,706
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 228
            CDSs (without protein)            :: 228
            Pseudo Genes (ambiguous residues) :: 0 of 228
            Pseudo Genes (frameshifted)       :: 119 of 228
            Pseudo Genes (incomplete)         :: 107 of 228
            Pseudo Genes (internal stop)      :: 65 of 228
            Pseudo Genes (multiple problems)  :: 55 of 228
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828376
                     /organism="Lactobacillus helveticus DSM 20075 = CGMCC
                     1.1877"
                     /mol_type="genomic DNA"
                     /strain="CGMCC 1.1877"
                     /isolation_source="emmental cheese"
                     /type_material="type strain of Lactobacillus helveticus"
                     /db_xref="taxon:585520"
                     /collection_date="1925"
WGS         AZEK01000001-AZEK01000257
WGS_SCAFLD  NZ_AZEK01000001-NZ_AZEK01000257
//
LOCUS       NZ_JQRY01000000      3900819 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira borgpetersenii strain 56604, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQRY00000000
VERSION     NZ_JQRY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02947776
            Assembly: GCF_001569465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira borgpetersenii
  ORGANISM  Leptospira borgpetersenii
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 3900819)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Chang,Y.F., Zhang,Y., Jiang,X., Zhuang,X.,
            Zhu,Y., Zhang,J., Zeng,L., Yang,M., Li,S., Wang,S., Ye,Q., Xin,X.,
            Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Whole genome sequencing revealed host adaptation-focused genomic
            plasticity of pathogenic Leptospira
  JOURNAL   Sci Rep 6, 20020 (2016)
   PUBMED   26833181
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3900819)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2014) Genomic Sequencing, Chinese National Human
            Genome Center at Shanghai, No.250, Bibo Road, Shanghai 201203,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQRY00000000.1.
            The Leptospira borgpetersenii whole genome shotgun (WGS) project
            has the project accession NZ_JQRY00000000.  This version of the
            project (01) has the accession number NZ_JQRY01000000, and consists
            of sequences JQRY01000001-JQRY01000229.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. v1.2.03
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 350.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001569465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,477
            CDSs (total)                      :: 3,434
            Genes (coding)                    :: 3,175
            CDSs (with protein)               :: 3,175
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 259
            CDSs (without protein)            :: 259
            Pseudo Genes (ambiguous residues) :: 0 of 259
            Pseudo Genes (frameshifted)       :: 149 of 259
            Pseudo Genes (incomplete)         :: 160 of 259
            Pseudo Genes (internal stop)      :: 46 of 259
            Pseudo Genes (multiple problems)  :: 82 of 259
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3900819
                     /organism="Leptospira borgpetersenii"
                     /mol_type="genomic DNA"
                     /strain="56604"
                     /isolation_source="Sichuan, China"
                     /host="Mus musculus"
                     /db_xref="taxon:174"
                     /geo_loc_name="China"
                     /lat_lon="30.40 N 104.04 E"
                     /collection_date="1964"
                     /collected_by="Jincai Qin"
WGS         JQRY01000001-JQRY01000229
WGS_SCAFLD  NZ_JQRY01000001-NZ_JQRY01000229
//
LOCUS       NZ_JQRA01000000      3750210 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira borgpetersenii strain 56676, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQRA00000000
VERSION     NZ_JQRA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02947784
            Assembly: GCF_001568305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira borgpetersenii
  ORGANISM  Leptospira borgpetersenii
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 3750210)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Chang,Y.F., Zhang,Y., Jiang,X., Zhuang,X.,
            Zhu,Y., Zhang,J., Zeng,L., Yang,M., Li,S., Wang,S., Ye,Q., Xin,X.,
            Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Whole genome sequencing revealed host adaptation-focused genomic
            plasticity of pathogenic Leptospira
  JOURNAL   Sci Rep 6, 20020 (2016)
   PUBMED   26833181
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3750210)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2014) Genomic Sequencing, Chinese National Human
            Genome Center at Shanghai, No.250, Bibo Road, Shanghai 201203,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQRA00000000.1.
            The Leptospira borgpetersenii whole genome shotgun (WGS) project
            has the project accession NZ_JQRA00000000.  This version of the
            project (01) has the accession number NZ_JQRA01000000, and consists
            of sequences JQRA01000001-JQRA01000301.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. v1.2.03
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 407.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001568305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,419
            CDSs (total)                      :: 3,377
            Genes (coding)                    :: 3,090
            CDSs (with protein)               :: 3,090
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 287
            CDSs (without protein)            :: 287
            Pseudo Genes (ambiguous residues) :: 0 of 287
            Pseudo Genes (frameshifted)       :: 152 of 287
            Pseudo Genes (incomplete)         :: 200 of 287
            Pseudo Genes (internal stop)      :: 33 of 287
            Pseudo Genes (multiple problems)  :: 86 of 287
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750210
                     /organism="Leptospira borgpetersenii"
                     /mol_type="genomic DNA"
                     /strain="56676"
                     /isolation_source="Yunnan, China"
                     /host="Homo sapiens"
                     /db_xref="taxon:174"
                     /geo_loc_name="China"
                     /lat_lon="25.04 N 102.42 E"
                     /collection_date="1979"
                     /collected_by="Jincai Qin"
WGS         JQRA01000001-JQRA01000301
WGS_SCAFLD  NZ_JQRA01000001-NZ_JQRA01000301
//
LOCUS       NZ_JQQX01000000      3892822 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira borgpetersenii strain 56648, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQQX00000000
VERSION     NZ_JQQX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02947782
            Assembly: GCF_001569155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira borgpetersenii
  ORGANISM  Leptospira borgpetersenii
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 3892822)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Chang,Y.F., Zhang,Y., Jiang,X., Zhuang,X.,
            Zhu,Y., Zhang,J., Zeng,L., Yang,M., Li,S., Wang,S., Ye,Q., Xin,X.,
            Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Whole genome sequencing revealed host adaptation-focused genomic
            plasticity of pathogenic Leptospira
  JOURNAL   Sci Rep 6, 20020 (2016)
   PUBMED   26833181
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3892822)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2014) Genomic Sequencing, Chinese National Human
            Genome Center at Shanghai, No.250, Bibo Road, Shanghai 201203,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQQX00000000.1.
            The Leptospira borgpetersenii whole genome shotgun (WGS) project
            has the project accession NZ_JQQX00000000.  This version of the
            project (01) has the accession number NZ_JQQX01000000, and consists
            of sequences JQQX01000001-JQQX01000222.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. v1.2.03
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 356.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001569155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:48:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,464
            CDSs (total)                      :: 3,421
            Genes (coding)                    :: 3,160
            CDSs (with protein)               :: 3,160
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 261
            CDSs (without protein)            :: 261
            Pseudo Genes (ambiguous residues) :: 0 of 261
            Pseudo Genes (frameshifted)       :: 150 of 261
            Pseudo Genes (incomplete)         :: 159 of 261
            Pseudo Genes (internal stop)      :: 49 of 261
            Pseudo Genes (multiple problems)  :: 83 of 261
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3892822
                     /organism="Leptospira borgpetersenii"
                     /mol_type="genomic DNA"
                     /strain="56648"
                     /isolation_source="Guangdong, China"
                     /host="Rattus losea"
                     /db_xref="taxon:174"
                     /geo_loc_name="China"
                     /lat_lon="23.08 N 113.14 E"
                     /collection_date="1971"
                     /collected_by="Jincai Qin"
WGS         JQQX01000001-JQQX01000222
WGS_SCAFLD  NZ_JQQX01000001-NZ_JQQX01000222
//
LOCUS       NZ_JQSA01000000      3758628 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira borgpetersenii strain 56613, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQSA00000000
VERSION     NZ_JQSA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02947778
            Assembly: GCF_001569485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira borgpetersenii
  ORGANISM  Leptospira borgpetersenii
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 3758628)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Chang,Y.F., Zhang,Y., Jiang,X., Zhuang,X.,
            Zhu,Y., Zhang,J., Zeng,L., Yang,M., Li,S., Wang,S., Ye,Q., Xin,X.,
            Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Whole genome sequencing revealed host adaptation-focused genomic
            plasticity of pathogenic Leptospira
  JOURNAL   Sci Rep 6, 20020 (2016)
   PUBMED   26833181
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758628)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2014) Genomic Sequencing, Chinese National Human
            Genome Center at Shanghai, No.250, Bibo Road, Shanghai 201203,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQSA00000000.1.
            The Leptospira borgpetersenii whole genome shotgun (WGS) project
            has the project accession NZ_JQSA00000000.  This version of the
            project (01) has the accession number NZ_JQSA01000000, and consists
            of sequences JQSA01000001-JQSA01000305.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. v1.2.03
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 344.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001569485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,421
            CDSs (total)                      :: 3,379
            Genes (coding)                    :: 3,080
            CDSs (with protein)               :: 3,080
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 299
            CDSs (without protein)            :: 299
            Pseudo Genes (ambiguous residues) :: 0 of 299
            Pseudo Genes (frameshifted)       :: 154 of 299
            Pseudo Genes (incomplete)         :: 208 of 299
            Pseudo Genes (internal stop)      :: 33 of 299
            Pseudo Genes (multiple problems)  :: 84 of 299
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758628
                     /organism="Leptospira borgpetersenii"
                     /mol_type="genomic DNA"
                     /strain="56613"
                     /isolation_source="Anhui, China"
                     /host="Homo sapiens"
                     /db_xref="taxon:174"
                     /geo_loc_name="China"
                     /lat_lon="31.52 N 117.17 E"
                     /collection_date="1965"
                     /collected_by="Jincai Qin"
WGS         JQSA01000001-JQSA01000305
WGS_SCAFLD  NZ_JQSA01000001-NZ_JQSA01000305
//
LOCUS       NZ_JQRZ01000000      3900903 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira borgpetersenii strain 56607, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JQRZ00000000
VERSION     NZ_JQRZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02947777
            Assembly: GCF_001568495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira borgpetersenii
  ORGANISM  Leptospira borgpetersenii
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 3900903)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Chang,Y.F., Zhang,Y., Jiang,X., Zhuang,X.,
            Zhu,Y., Zhang,J., Zeng,L., Yang,M., Li,S., Wang,S., Ye,Q., Xin,X.,
            Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Whole genome sequencing revealed host adaptation-focused genomic
            plasticity of pathogenic Leptospira
  JOURNAL   Sci Rep 6, 20020 (2016)
   PUBMED   26833181
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3900903)
  AUTHORS   Xu,Y., Zhu,Y., Wang,Y., Zhao,G., Zheng,H., Guo,X. and Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2014) Genomic Sequencing, Chinese National Human
            Genome Center at Shanghai, No.250, Bibo Road, Shanghai 201203,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JQRZ00000000.1.
            The Leptospira borgpetersenii whole genome shotgun (WGS) project
            has the project accession NZ_JQRZ00000000.  This version of the
            project (01) has the accession number NZ_JQRZ01000000, and consists
            of sequences JQRZ01000001-JQRZ01000220.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. v1.2.03
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 333.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001568495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:41:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,481
            CDSs (total)                      :: 3,438
            Genes (coding)                    :: 3,182
            CDSs (with protein)               :: 3,182
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 256
            CDSs (without protein)            :: 256
            Pseudo Genes (ambiguous residues) :: 0 of 256
            Pseudo Genes (frameshifted)       :: 149 of 256
            Pseudo Genes (incomplete)         :: 157 of 256
            Pseudo Genes (internal stop)      :: 46 of 256
            Pseudo Genes (multiple problems)  :: 82 of 256
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3900903
                     /organism="Leptospira borgpetersenii"
                     /mol_type="genomic DNA"
                     /strain="56607"
                     /isolation_source="Fujian, China"
                     /host="Equus caballus"
                     /db_xref="taxon:174"
                     /geo_loc_name="China"
                     /lat_lon="26.05 N 119.18 E"
                     /collection_date="1959"
                     /collected_by="Jincai Qin"
WGS         JQRZ01000001-JQRZ01000220
WGS_SCAFLD  NZ_JQRZ01000001-NZ_JQRZ01000220
//
LOCUS       NZ_SCIF01000000      1984086 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Latilactobacillus sakei strain L15, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SCIF00000000
VERSION     NZ_SCIF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10744150
            Assembly: GCF_004099995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Latilactobacillus sakei
  ORGANISM  Latilactobacillus sakei
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Latilactobacillus.
REFERENCE   1  (bases 1 to 1984086)
  AUTHORS   Ayala,D.I., Cook,P.W., Franco,J.G., Bugarel,M., Kottapalli,K.R.,
            Loneragan,G.H., Brashears,M. and Nightingale,K.
  TITLE     A systematic approach to identify and characterize the
            effectiveness and safety of novel probiotic strains to control
            foodborne pathogens along the food continuum through combined
            genotypic and phenotypic assays
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1984086)
  AUTHORS   Ayala,D.I., Cook,P.W., Franco,J.G., Bugarel,M., Kottapalli,K.R.,
            Loneragan,G.H., Brashears,M. and Nightingale,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2019) Animal and Food Sciences, Texas Tech
            University, 1008 Canton Ave, Lubbock, TX 79409, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SCIF00000000.1.
            The Latilactobacillus sakei whole genome shotgun (WGS) project has
            the project accession NZ_SCIF00000000.  This version of the project
            (01) has the accession number NZ_SCIF01000000, and consists of
            sequences SCIF01000001-SCIF01000071.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 95x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004099995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:25:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,090
            CDSs (total)                      :: 2,009
            Genes (coding)                    :: 1,953
            CDSs (with protein)               :: 1,953
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 10, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 9, 3 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 12 of 56
            Pseudo Genes (incomplete)         :: 40 of 56
            Pseudo Genes (internal stop)      :: 5 of 56
            Pseudo Genes (multiple problems)  :: 1 of 56
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984086
                     /organism="Latilactobacillus sakei"
                     /mol_type="genomic DNA"
                     /strain="L15"
                     /host="bovine"
                     /db_xref="taxon:1599"
                     /geo_loc_name="USA"
                     /collection_date="2013"
WGS         SCIF01000001-SCIF01000071
WGS_SCAFLD  NZ_SCIF01000001-NZ_SCIF01000071
//
LOCUS       NZ_CDXDVW010000000   3047287 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Mesotoga prima isolate MarMAG_073291, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CDXDVW000000000
VERSION     NZ_CDXDVW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120956060
            Assembly: GCF_978023145.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Mesotoga prima (marine sediment metagenome)
  ORGANISM  Mesotoga prima
            Bacteria; Thermotogati; Thermotogota; Thermotogae; Kosmotogales;
            Kosmotogaceae; Mesotoga.
REFERENCE   1  (bases 1 to 3047287)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2026) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDXDVW000000000.1.
            The Mesotoga prima whole genome shotgun (WGS) project has the
            project accession NZ_CDXDVW000000000.  This version of the project
            (01) has the accession number NZ_CDXDVW010000000, and consists of
            sequences CDXDVW010000001-CDXDVW010000215.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_978023145.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:09:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,843
            CDSs (total)                      :: 2,798
            Genes (coding)                    :: 2,738
            CDSs (with protein)               :: 2,738
            Genes (RNA)                       :: 45
            tRNAs                             :: 43
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 7 of 60
            Pseudo Genes (incomplete)         :: 50 of 60
            Pseudo Genes (internal stop)      :: 7 of 60
            Pseudo Genes (multiple problems)  :: 4 of 60
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047287
                     /organism="Mesotoga prima"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_073291"
                     /isolation_source="methanogenic consortium capable of
                     long-chain paraffin degradation (SDB culture) enriched
                     from contaminated sediments of San Diego Bay, California;
                     degrades n-alkanes from C25 to C50"
                     /db_xref="taxon:1184387"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2014-11-14"
                     /metagenome_source="marine sediment metagenome"
                     /metagenomic
WGS         CDXDVW010000001-CDXDVW010000215
WGS_SCAFLD  NZ_CDXDVW010000001-NZ_CDXDVW010000215
//
LOCUS       NZ_JSBE01000000      2072518 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 60, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JSBE00000000
VERSION     NZ_JSBE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03103713
            Assembly: GCF_001047545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2072518)
  AUTHORS   Djukic,M., Erler,S., Leimbach,A., Grossar,D., Charriere,J.D.,
            Gauthier,L., Hartken,D., Dietrich,S., Nacke,H., Daniel,R. and
            Poehlein,A.
  TITLE     Comparative Genomics and Description of Putative Virulence Factors
            of Melissococcus plutonius, the Causative Agent of European
            Foulbrood Disease in Honey Bees
  JOURNAL   Genes (Basel) 9 (8), 419 (2018)
   PUBMED   30127293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2072518)
  AUTHORS   Djukic,M., Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2015) Genomic and Applied Microbiology and
            Goettingen Genomics Laboratory, Institute of Microbiology and
            Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSBE00000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JSBE00000000.  This version of the project
            (01) has the accession number NZ_JSBE01000000, and consists of
            sequences JSBE01000001-JSBE01000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.1.1
            Genome Coverage       :: 185x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001047545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:31:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,872
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,716
            CDSs (with protein)               :: 1,716
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 27
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 70 of 122
            Pseudo Genes (incomplete)         :: 22 of 122
            Pseudo Genes (internal stop)      :: 50 of 122
            Pseudo Genes (multiple problems)  :: 19 of 122
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072518
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="60"
                     /isolation_source="EFB infected honey bee larva"
                     /host="honey bee"
                     /db_xref="taxon:33970"
                     /geo_loc_name="Switzerland"
                     /collection_date="2011"
WGS         JSBE01000001-JSBE01000013
WGS_SCAFLD  NZ_JSBE01000001-NZ_JSBE01000013
//
LOCUS       NZ_SUNK01000000      1948225 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leuconostoc mesenteroides subsp. mesenteroides strain KIBGE-IB22,
            whole genome shotgun sequencing project.
ACCESSION   NZ_SUNK00000000
VERSION     NZ_SUNK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11431368
            Assembly: GCF_005049065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leuconostoc mesenteroides subsp. mesenteroides
  ORGANISM  Leuconostoc mesenteroides subsp. mesenteroides
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Leuconostoc.
REFERENCE   1  (bases 1 to 1948225)
  AUTHORS   Siddiqui,N., Shabbir,Z., Khatoon,A., Aman,A. and Qader,S.A.U.
  TITLE     Whole Genome Sequence of Leuconostoc mesenteroides subsp.
            mesenteroides Strain KIBGE-IB22, Isolated from Fermented Cabbage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1948225)
  AUTHORS   Siddiqui,N., Shabbir,Z., Khatoon,A., Aman,A. and Qader,S.A.U.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-APR-2019) Industrial Biotechnology, The Karachi
            Institute of Biotechnology and Genetic Engineering (KIBGE),
            University of Karachi, University Road, Karachi, Sindh 75270,
            Pakistan
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SUNK00000000.1.
            The Leuconostoc mesenteroides subsp. mesenteroides whole genome
            shotgun (WGS) project has the project accession NZ_SUNK00000000.
            This version of the project (01) has the accession number
            NZ_SUNK01000000, and consists of sequences
            SUNK01000001-SUNK01000013.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 110.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_005049065.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:44:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,984
            CDSs (total)                      :: 1,929
            Genes (coding)                    :: 1,903
            CDSs (with protein)               :: 1,903
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 12 of 26
            Pseudo Genes (incomplete)         :: 11 of 26
            Pseudo Genes (internal stop)      :: 5 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1948225
                     /organism="Leuconostoc mesenteroides subsp. mesenteroides"
                     /mol_type="genomic DNA"
                     /strain="KIBGE-IB22"
                     /isolation_source="fermented cabbage"
                     /sub_species="mesenteroides"
                     /db_xref="taxon:33967"
                     /geo_loc_name="Pakistan: Karachi"
                     /collection_date="2010"
WGS         SUNK01000001-SUNK01000013
WGS_SCAFLD  NZ_SUNK01000001-NZ_SUNK01000013
//
LOCUS       NZ_AERF01000000      1856042 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Moraxella catarrhalis 46P47B1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AERF00000000
VERSION     NZ_AERF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02393787
            Assembly: GCF_000192945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Moraxella catarrhalis 46P47B1
  ORGANISM  Moraxella catarrhalis 46P47B1
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Moraxella.
REFERENCE   1  (bases 1 to 1856042)
  AUTHORS   Davie,J.J., Earl,J., de Vries,S.P., Ahmed,A., Hu,F.Z.,
            Bootsma,H.J., Stol,K., Hermans,P.W., Wadowsky,R.M., Ehrlich,G.D.,
            Hays,J.P. and Campagnari,A.A.
  TITLE     Comparative analysis and supragenome modeling of twelve Moraxella
            catarrhalis clinical isolates
  JOURNAL   BMC Genomics 12, 70 (2011)
   PUBMED   21269504
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856042)
  AUTHORS   Ehrlich,G.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2011) Center for Genomic Sciences,
            Allegheny-Singer Research Institute, 320 E. North Ave. 11th Floor,
            Pittsburgh, PA 15212-4772, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AERF00000000.1.
            The Moraxella catarrhalis 46P47B1 whole genome shotgun (WGS)
            project has the project accession NZ_AERF00000000.  This version of
            the project (01) has the accession number NZ_AERF01000000, and
            consists of sequences AERF01000001-AERF01000069.
            Source DNA available from Garth D. Ehrlich 320 E. North Ave. 11th
            Floor, Pittsburgh PA 15212; Bacteria available from Anthony
            Campagnari, University at Buffalo SUNY, Room 140 Biomedical
            Research Building, 3435 Main Street, Buffalo, NY 14214
            
            Genome was manually curated based on annotation generated by the
            NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.
            Information about the Pipeline can be found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.0.01.14
            Genome Coverage       :: 20.6x
            Sequencing Technology :: 454 GS-20
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000192945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:28:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,766
            CDSs (total)                      :: 1,724
            Genes (coding)                    :: 1,675
            CDSs (with protein)               :: 1,675
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 1 of 49
            Pseudo Genes (frameshifted)       :: 29 of 49
            Pseudo Genes (incomplete)         :: 19 of 49
            Pseudo Genes (internal stop)      :: 8 of 49
            Pseudo Genes (multiple problems)  :: 7 of 49
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856042
                     /organism="Moraxella catarrhalis 46P47B1"
                     /mol_type="genomic DNA"
                     /strain="46P47B1"
                     /db_xref="taxon:857578"
WGS         AERF01000001-AERF01000069
WGS_SCAFLD  NZ_AERF01000001-NZ_AERF01000069
//
LOCUS       NZ_JSAZ01000000      2066856 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 90.0, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JSAZ00000000
VERSION     NZ_JSAZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03103708
            Assembly: GCF_001047445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2066856)
  AUTHORS   Djukic,M., Erler,S., Leimbach,A., Grossar,D., Charriere,J.D.,
            Gauthier,L., Hartken,D., Dietrich,S., Nacke,H., Daniel,R. and
            Poehlein,A.
  TITLE     Comparative Genomics and Description of Putative Virulence Factors
            of Melissococcus plutonius, the Causative Agent of European
            Foulbrood Disease in Honey Bees
  JOURNAL   Genes (Basel) 9 (8), 419 (2018)
   PUBMED   30127293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066856)
  AUTHORS   Djukic,M., Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2014) Department of Genomic and Applied
            Microbiology/Goettingen Genomics Laboratory, Institute of
            Microbiology and Genetics, Grisebachstr. 8, Goettingen 37077,
            Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSAZ00000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JSAZ00000000.  This version of the project
            (01) has the accession number NZ_JSAZ01000000, and consists of
            sequences JSAZ01000001-JSAZ01000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.0.0
            Genome Coverage       :: 102x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001047445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:32:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,887
            CDSs (total)                      :: 1,829
            Genes (coding)                    :: 1,713
            CDSs (with protein)               :: 1,713
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 63 of 116
            Pseudo Genes (incomplete)         :: 20 of 116
            Pseudo Genes (internal stop)      :: 53 of 116
            Pseudo Genes (multiple problems)  :: 19 of 116
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066856
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="90.0"
                     /isolation_source="EFB infected honey bee larva"
                     /host="honey bee"
                     /db_xref="taxon:33970"
                     /geo_loc_name="Switzerland"
                     /collection_date="2011"
WGS         JSAZ01000001-JSAZ01000015
WGS_SCAFLD  NZ_JSAZ01000001-NZ_JSAZ01000015
//
LOCUS       NZ_VSVF01000000      1885658 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain FJLHD7M2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VSVF00000000
VERSION     NZ_VSVF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616921
            Assembly: GCF_009863495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1885658)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1885658)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSVF00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSVF00000000.  This version of the
            project (01) has the accession number NZ_VSVF01000000, and consists
            of sequences VSVF01000001-VSVF01000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009863495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:49:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,881
            CDSs (total)                      :: 1,842
            Genes (coding)                    :: 1,801
            CDSs (with protein)               :: 1,801
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 33
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 17 of 41
            Pseudo Genes (incomplete)         :: 18 of 41
            Pseudo Genes (internal stop)      :: 12 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885658
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="FJLHD7M2"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSVF01000001-VSVF01000068
WGS_SCAFLD  NZ_VSVF01000001-NZ_VSVF01000068
//
LOCUS       NZ_VSUA01000000      1881426 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain FYNDL6_3.scaf, whole genome
            shotgun sequencing project.
ACCESSION   NZ_VSUA00000000
VERSION     NZ_VSUA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616953
            Assembly: GCF_009866035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1881426)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1881426)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSUA00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSUA00000000.  This version of the
            project (01) has the accession number NZ_VSUA01000000, and consists
            of sequences VSUA01000001-VSUA01000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009866035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:50:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,913
            CDSs (total)                      :: 1,834
            Genes (coding)                    :: 1,798
            CDSs (with protein)               :: 1,798
            Genes (RNA)                       :: 79
            rRNAs                             :: 7, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 20 of 36
            Pseudo Genes (internal stop)      :: 9 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1881426
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="FYNDL6_3.scaf"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSUA01000001-VSUA01000057
WGS_SCAFLD  NZ_VSUA01000001-NZ_VSUA01000057
//
LOCUS       NZ_LFXV01000000      2558586 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mannheimia haemolytica strain T14, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LFXV00000000
VERSION     NZ_LFXV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03840490
            Assembly: GCF_001596575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2558586)
  AUTHORS   Klima,C.L., Cook,S.R., Zaheer,R., Laing,C., Gannon,V.P., Xu,Y.,
            Rasmussen,J., Potter,A., Hendrick,S., Alexander,T.W. and
            McAllister,T.A.
  TITLE     Comparative Genomic Analysis of Mannheimia haemolytica from Bovine
            Sources
  JOURNAL   PLoS One 11 (2), e0149520 (2016)
   PUBMED   26926339
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558586)
  AUTHORS   Klima,C.L., Cook,S.R., Zaheer,R., Laing,C.R., Xu,Y., Rasmussen,J.,
            Potter,A., Hendrick,S.H., Alexander,T.W. and McAllister,T.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2015) Research and Technology Branch, Agriculture
            and Agri-Food Canada, 5403 1st Avenue South, Lethbridge, AB T1J
            4B1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFXV00000000.1.
            The Mannheimia haemolytica whole genome shotgun (WGS) project has
            the project accession NZ_LFXV00000000.  This version of the project
            (01) has the accession number NZ_LFXV01000000, and consists of
            sequences LFXV01000001-LFXV01000101.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2012
            Assembly Method        :: Newbler v. 2.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 22.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001596575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,662
            CDSs (total)                      :: 2,608
            Genes (coding)                    :: 2,506
            CDSs (with protein)               :: 2,506
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 46 of 102
            Pseudo Genes (incomplete)         :: 53 of 102
            Pseudo Genes (internal stop)      :: 8 of 102
            Pseudo Genes (multiple problems)  :: 5 of 102
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558586
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /strain="T14"
                     /isolation_source="trachea"
                     /host="bovine"
                     /db_xref="taxon:75985"
                     /geo_loc_name="France"
                     /collection_date="2007"
WGS         LFXV01000001-LFXV01000101
WGS_SCAFLD  NZ_LFXV01000001-NZ_LFXV01000101
//
LOCUS       NZ_VSUC01000000      1928741 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain FYNDL2_4.scaf, whole genome
            shotgun sequencing project.
ACCESSION   NZ_VSUC00000000
VERSION     NZ_VSUC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616951
            Assembly: GCF_009866015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1928741)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1928741)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSUC00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSUC00000000.  This version of the
            project (01) has the accession number NZ_VSUC01000000, and consists
            of sequences VSUC01000001-VSUC01000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009866015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:51:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,969
            CDSs (total)                      :: 1,897
            Genes (coding)                    :: 1,857
            CDSs (with protein)               :: 1,857
            Genes (RNA)                       :: 72
            rRNAs                             :: 1, 4 (5S, 16S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4 (16S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 21 of 40
            Pseudo Genes (incomplete)         :: 16 of 40
            Pseudo Genes (internal stop)      :: 12 of 40
            Pseudo Genes (multiple problems)  :: 9 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928741
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="FYNDL2_4.scaf"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSUC01000001-VSUC01000040
WGS_SCAFLD  NZ_VSUC01000001-NZ_VSUC01000040
//
LOCUS       NZ_JSBA01000000      2075929 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 49.3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JSBA00000000
VERSION     NZ_JSBA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03103709
            Assembly: GCF_001047395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2075929)
  AUTHORS   Djukic,M., Erler,S., Leimbach,A., Grossar,D., Charriere,J.D.,
            Gauthier,L., Hartken,D., Dietrich,S., Nacke,H., Daniel,R. and
            Poehlein,A.
  TITLE     Comparative Genomics and Description of Putative Virulence Factors
            of Melissococcus plutonius, the Causative Agent of European
            Foulbrood Disease in Honey Bees
  JOURNAL   Genes (Basel) 9 (8), 419 (2018)
   PUBMED   30127293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075929)
  AUTHORS   Djukic,M., Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-OCT-2014) Department of Genomic and Applied
            Microbiology/Goettingen Genomics Laboratory, Institute of
            Microbiology and Genetics, Grisebachstr. 8, Goettingen 37077,
            Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSBA00000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JSBA00000000.  This version of the project
            (01) has the accession number NZ_JSBA01000000, and consists of
            sequences JSBA01000001-JSBA01000009.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.0.0
            Genome Coverage       :: 102x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001047395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,890
            CDSs (total)                      :: 1,832
            Genes (coding)                    :: 1,709
            CDSs (with protein)               :: 1,709
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 71 of 123
            Pseudo Genes (incomplete)         :: 22 of 123
            Pseudo Genes (internal stop)      :: 50 of 123
            Pseudo Genes (multiple problems)  :: 19 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075929
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="49.3"
                     /isolation_source="EFB infected honey bee larva"
                     /host="honey bee"
                     /db_xref="taxon:33970"
                     /geo_loc_name="Switzerland"
                     /collection_date="2011"
WGS         JSBA01000001-JSBA01000009
WGS_SCAFLD  NZ_CM003360
WGS_SCAFLD  NZ_JSBA01000001-NZ_JSBA01000008
//
LOCUS       NZ_JSBC01000000      2075507 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain H6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JSBC00000000
VERSION     NZ_JSBC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03103711
            Assembly: GCF_001047525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2075507)
  AUTHORS   Djukic,M., Erler,S., Leimbach,A., Grossar,D., Charriere,J.D.,
            Gauthier,L., Hartken,D., Dietrich,S., Nacke,H., Daniel,R. and
            Poehlein,A.
  TITLE     Comparative Genomics and Description of Putative Virulence Factors
            of Melissococcus plutonius, the Causative Agent of European
            Foulbrood Disease in Honey Bees
  JOURNAL   Genes (Basel) 9 (8), 419 (2018)
   PUBMED   30127293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075507)
  AUTHORS   Djukic,M., Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2015) Genomic and Applied Microbiology and
            Goettingen Genomics Laboratory, Institute of Microbiology and
            Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSBC00000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JSBC00000000.  This version of the project
            (01) has the accession number NZ_JSBC01000000, and consists of
            sequences JSBC01000001-JSBC01000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.1.1
            Genome Coverage       :: 220x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001047525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:47:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,891
            CDSs (total)                      :: 1,835
            Genes (coding)                    :: 1,712
            CDSs (with protein)               :: 1,712
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 71 of 123
            Pseudo Genes (incomplete)         :: 22 of 123
            Pseudo Genes (internal stop)      :: 50 of 123
            Pseudo Genes (multiple problems)  :: 19 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075507
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="H6"
                     /isolation_source="EFB infected honey bee larva"
                     /host="honey bee"
                     /db_xref="taxon:33970"
                     /geo_loc_name="Switzerland"
                     /collection_date="2013"
WGS         JSBC01000001-JSBC01000011
WGS_SCAFLD  NZ_JSBC01000001-NZ_JSBC01000011
//
LOCUS       NZ_VSUW01000000      1986213 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain F_SD_HZ_D3_L_5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_VSUW00000000
VERSION     NZ_VSUW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616930
            Assembly: GCF_009870335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1986213)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1986213)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSUW00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSUW00000000.  This version of the
            project (01) has the accession number NZ_VSUW01000000, and consists
            of sequences VSUW01000001-VSUW01000051.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009870335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:48:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,991
            CDSs (total)                      :: 1,936
            Genes (coding)                    :: 1,897
            CDSs (with protein)               :: 1,897
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 10 of 39
            Pseudo Genes (incomplete)         :: 17 of 39
            Pseudo Genes (internal stop)      :: 19 of 39
            Pseudo Genes (multiple problems)  :: 6 of 39
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986213
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="F_SD_HZ_D3_L_5"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSUW01000001-VSUW01000051
WGS_SCAFLD  NZ_VSUW01000001-NZ_VSUW01000051
//
LOCUS       NZ_JSBD01000000      2058945 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain L9, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JSBD00000000
VERSION     NZ_JSBD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03103712
            Assembly: GCF_001047555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2058945)
  AUTHORS   Djukic,M., Erler,S., Leimbach,A., Grossar,D., Charriere,J.D.,
            Gauthier,L., Hartken,D., Dietrich,S., Nacke,H., Daniel,R. and
            Poehlein,A.
  TITLE     Comparative Genomics and Description of Putative Virulence Factors
            of Melissococcus plutonius, the Causative Agent of European
            Foulbrood Disease in Honey Bees
  JOURNAL   Genes (Basel) 9 (8), 419 (2018)
   PUBMED   30127293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058945)
  AUTHORS   Djukic,M., Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2015) Genomic and Applied Microbiology and
            Goettingen Genomics Laboratory, Institute of Microbiology and
            Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSBD00000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JSBD00000000.  This version of the project
            (01) has the accession number NZ_JSBD01000000, and consists of
            sequences JSBD01000001-JSBD01000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.1.1
            Genome Coverage       :: 240x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001047555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,872
            CDSs (total)                      :: 1,817
            Genes (coding)                    :: 1,691
            CDSs (with protein)               :: 1,691
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 72 of 126
            Pseudo Genes (incomplete)         :: 24 of 126
            Pseudo Genes (internal stop)      :: 50 of 126
            Pseudo Genes (multiple problems)  :: 19 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058945
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="L9"
                     /isolation_source="EFB infected honey bee larva"
                     /host="honey bee"
                     /db_xref="taxon:33970"
                     /geo_loc_name="Switzerland"
                     /collection_date="2013"
WGS         JSBD01000001-JSBD01000011
WGS_SCAFLD  NZ_JSBD01000001-NZ_JSBD01000011
//
LOCUS       NZ_JSAY01000000      2077318 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 21.1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JSAY00000000
VERSION     NZ_JSAY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03103707
            Assembly: GCF_001047455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2077318)
  AUTHORS   Djukic,M., Erler,S., Leimbach,A., Grossar,D., Charriere,J.D.,
            Gauthier,L., Hartken,D., Dietrich,S., Nacke,H., Daniel,R. and
            Poehlein,A.
  TITLE     Comparative Genomics and Description of Putative Virulence Factors
            of Melissococcus plutonius, the Causative Agent of European
            Foulbrood Disease in Honey Bees
  JOURNAL   Genes (Basel) 9 (8), 419 (2018)
   PUBMED   30127293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077318)
  AUTHORS   Djukic,M., Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2015) Genomic and Applied Microbiology and
            Goettingen Genomics Laboratory, Institute of Microbiology and
            Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSAY00000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JSAY00000000.  This version of the project
            (01) has the accession number NZ_JSAY01000000, and consists of
            sequences JSAY01000001-JSAY01000008.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.0.0
            Genome Coverage       :: 338x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001047455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:52:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,899
            CDSs (total)                      :: 1,843
            Genes (coding)                    :: 1,721
            CDSs (with protein)               :: 1,721
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 71 of 122
            Pseudo Genes (incomplete)         :: 21 of 122
            Pseudo Genes (internal stop)      :: 50 of 122
            Pseudo Genes (multiple problems)  :: 19 of 122
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077318
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="21.1"
                     /isolation_source="EFB infected honey bee larva"
                     /host="honey bee"
                     /db_xref="taxon:33970"
                     /geo_loc_name="Switzerland"
                     /collection_date="2011"
WGS         JSAY01000001-JSAY01000008
WGS_SCAFLD  NZ_JSAY01000001-NZ_JSAY01000008
//
LOCUS       NZ_VSVC01000000      1975559 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain FJSWX_34J_L5, whole genome
            shotgun sequencing project.
ACCESSION   NZ_VSVC00000000
VERSION     NZ_VSVC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616924
            Assembly: GCF_009870365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1975559)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1975559)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSVC00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSVC00000000.  This version of the
            project (01) has the accession number NZ_VSVC01000000, and consists
            of sequences VSVC01000001-VSVC01000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009870365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:52:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,987
            CDSs (total)                      :: 1,941
            Genes (coding)                    :: 1,902
            CDSs (with protein)               :: 1,902
            Genes (RNA)                       :: 46
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 15 of 39
            Pseudo Genes (incomplete)         :: 16 of 39
            Pseudo Genes (internal stop)      :: 17 of 39
            Pseudo Genes (multiple problems)  :: 8 of 39
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975559
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="FJSWX_34J_L5"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSVC01000001-VSVC01000038
WGS_SCAFLD  NZ_VSVC01000001-NZ_VSVC01000038
//
LOCUS       NZ_JSAW01000000      2101145 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain B5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JSAW00000000
VERSION     NZ_JSAW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03103705
            Assembly: GCF_001047405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2101145)
  AUTHORS   Djukic,M., Erler,S., Leimbach,A., Grossar,D., Charriere,J.D.,
            Gauthier,L., Hartken,D., Dietrich,S., Nacke,H., Daniel,R. and
            Poehlein,A.
  TITLE     Comparative Genomics and Description of Putative Virulence Factors
            of Melissococcus plutonius, the Causative Agent of European
            Foulbrood Disease in Honey Bees
  JOURNAL   Genes (Basel) 9 (8), 419 (2018)
   PUBMED   30127293
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101145)
  AUTHORS   Djukic,M., Poehlein,A. and Daniel,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2015) Genomic and Applied Microbiology and
            Goettingen Genomics Laboratory, Institute of Microbiology and
            Genetics, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JSAW00000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JSAW00000000.  This version of the project
            (01) has the accession number NZ_JSAW01000000, and consists of
            sequences JSAW01000001-JSAW01000006.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.0.0
            Genome Coverage       :: 485x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001047405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:06:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,930
            CDSs (total)                      :: 1,889
            Genes (coding)                    :: 1,763
            CDSs (with protein)               :: 1,763
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 71 of 126
            Pseudo Genes (incomplete)         :: 25 of 126
            Pseudo Genes (internal stop)      :: 50 of 126
            Pseudo Genes (multiple problems)  :: 19 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101145
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="B5"
                     /isolation_source="EFB infected honey bee larva"
                     /host="honey bee"
                     /db_xref="taxon:33970"
                     /geo_loc_name="Switzerland"
                     /collection_date="2013"
                     /collected_by="EFB"
WGS         JSAW01000001-JSAW01000006
WGS_SCAFLD  NZ_CM003359
WGS_SCAFLD  NZ_JSAW01000001-NZ_JSAW01000005
//
LOCUS       NZ_SCLV01000000      1857371 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactobacillus helveticus strain UC1035, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SCLV00000000
VERSION     NZ_SCLV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10756476
            Assembly: GCF_011392385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactobacillus helveticus
  ORGANISM  Lactobacillus helveticus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Lactobacillus.
REFERENCE   1  (bases 1 to 1857371)
  AUTHORS   Fontana,A., Falasconi,I., Molinari,P., Treu,L., Basile,A.,
            Vezzi,A., Campanaro,S. and Morelli,L.
  TITLE     Genomic comparison of Lactobacillus helveticus strains highlights
            probiotic potentials
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1857371)
  AUTHORS   Fontana,A., Falasconi,I., Molinari,P., Treu,L., Basile,A.,
            Vezzi,A., Campanaro,S. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2019) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SCLV00000000.1.
            The Lactobacillus helveticus whole genome shotgun (WGS) project has
            the project accession NZ_SCLV00000000.  This version of the project
            (01) has the accession number NZ_SCLV01000000, and consists of
            sequences SCLV01000001-SCLV01000192.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 11.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011392385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:59:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,044
            CDSs (total)                      :: 1,980
            Genes (coding)                    :: 1,717
            CDSs (with protein)               :: 1,717
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 58
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 263
            CDSs (without protein)            :: 263
            Pseudo Genes (ambiguous residues) :: 0 of 263
            Pseudo Genes (frameshifted)       :: 127 of 263
            Pseudo Genes (incomplete)         :: 139 of 263
            Pseudo Genes (internal stop)      :: 70 of 263
            Pseudo Genes (multiple problems)  :: 65 of 263
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1857371
                     /organism="Lactobacillus helveticus"
                     /mol_type="genomic DNA"
                     /strain="UC1035"
                     /isolation_source="natural whey"
                     /db_xref="taxon:1587"
                     /geo_loc_name="Italy"
                     /lat_lon="45.04 N 9.70 E"
                     /collection_date="2002"
WGS         SCLV01000001-SCLV01000192
WGS_SCAFLD  NZ_SCLV01000001-NZ_SCLV01000192
//
LOCUS       NZ_JAFENZ010000000   2851925 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDX8P112P-1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFENZ000000000
VERSION     NZ_JAFENZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17386242
            Assembly: GCF_016892285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2851925)
  AUTHORS   Chen,L.
  TITLE     optrA-positive Staphylococcus spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2851925)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2021) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Guangzhou, Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFENZ000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFENZ000000000.  This version of the
            project (01) has the accession number NZ_JAFENZ010000000, and
            consists of sequences JAFENZ010000001-JAFENZ010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: CLC NGS Cell v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1006x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016892285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:32:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,924
            CDSs (total)                      :: 2,861
            Genes (coding)                    :: 2,834
            CDSs (with protein)               :: 2,834
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 2 of 27
            Pseudo Genes (incomplete)         :: 22 of 27
            Pseudo Genes (internal stop)      :: 4 of 27
            Pseudo Genes (multiple problems)  :: 1 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851925
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDX8P112P-1"
                     /isolation_source="environment"
                     /db_xref="taxon:1296"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2018-12-27"
WGS         JAFENZ010000001-JAFENZ010000012
WGS_SCAFLD  NZ_JAFENZ010000001-NZ_JAFENZ010000012
//
LOCUS       NZ_WIPC01000000      2485026 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis strain A12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WIPC00000000
VERSION     NZ_WIPC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13018492
            Assembly: GCF_009497135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis
  ORGANISM  Lactococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2485026)
  AUTHORS   Melo Bolivar,J., Marino-Ramirez,L. and Villamil Diaz,L.M.
  TITLE     WGS of Lactococcus lactis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2485026)
  AUTHORS   Melo Bolivar,J., Marino-Ramirez,L. and Villamil Diaz,L.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2019) NCBI / NLM, NIH, 8600 Rockville Pike,
            Bethesda, MD 20894, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WIPC00000000.1.
            The Lactococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_WIPC00000000.  This version of the project
            (01) has the accession number NZ_WIPC01000000, and consists of
            sequences WIPC01000001-WIPC01000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Javier Melo Bolivar -
            UniSabana.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 10-OCT-2019
            Assembly Method        :: SKESA v. 2.4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009497135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:54:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,455
            CDSs (total)                      :: 2,396
            Genes (coding)                    :: 2,357
            CDSs (with protein)               :: 2,357
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 9 of 39
            Pseudo Genes (incomplete)         :: 29 of 39
            Pseudo Genes (internal stop)      :: 5 of 39
            Pseudo Genes (multiple problems)  :: 3 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485026
                     /organism="Lactococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="A12"
                     /isolation_source="tilapia intestine"
                     /host="Oreochromis niloticus"
                     /db_xref="taxon:1358"
                     /geo_loc_name="Colombia: Llanos and Atlantic"
                     /collection_date="2018"
WGS         WIPC01000001-WIPC01000043
WGS_SCAFLD  NZ_WIPC01000001-NZ_WIPC01000043
//
LOCUS       NZ_JAFENP010000000   2874273 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GFQ9D239A, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFENP000000000
VERSION     NZ_JAFENP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17386252
            Assembly: GCF_016892085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2874273)
  AUTHORS   Chen,L.
  TITLE     optrA-positive Staphylococcus spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2874273)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2021) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Guangzhou, Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFENP000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFENP000000000.  This version of the
            project (01) has the accession number NZ_JAFENP010000000, and
            consists of sequences JAFENP010000001-JAFENP010000024.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: CLC NGS Cell v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1006x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016892085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,933
            CDSs (total)                      :: 2,874
            Genes (coding)                    :: 2,846
            CDSs (with protein)               :: 2,846
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 3 of 28
            Pseudo Genes (incomplete)         :: 22 of 28
            Pseudo Genes (internal stop)      :: 3 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2874273
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GFQ9D239A"
                     /host="Homo sapiens"
                     /db_xref="taxon:1296"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2019-04-12"
WGS         JAFENP010000001-JAFENP010000024
WGS_SCAFLD  NZ_JAFENP010000001-NZ_JAFENP010000024
//
LOCUS       NZ_VSUI01000000      1914975 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain FXJKS17M7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VSUI00000000
VERSION     NZ_VSUI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616945
            Assembly: GCF_009870225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1914975)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1914975)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSUI00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSUI00000000.  This version of the
            project (01) has the accession number NZ_VSUI01000000, and consists
            of sequences VSUI01000001-VSUI01000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009870225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:00:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,916
            CDSs (total)                      :: 1,866
            Genes (coding)                    :: 1,825
            CDSs (with protein)               :: 1,825
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 18 of 41
            Pseudo Genes (incomplete)         :: 21 of 41
            Pseudo Genes (internal stop)      :: 11 of 41
            Pseudo Genes (multiple problems)  :: 7 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914975
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="FXJKS17M7"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSUI01000001-VSUI01000056
WGS_SCAFLD  NZ_VSUI01000001-NZ_VSUI01000056
//
LOCUS       NZ_JAFEOY010000000   2852730 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDK8D41P, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFEOY000000000
VERSION     NZ_JAFEOY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17386217
            Assembly: GCF_016893065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2852730)
  AUTHORS   Chen,L.
  TITLE     optrA-positive Staphylococcus spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2852730)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2021) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Guangzhou, Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFEOY000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFEOY000000000.  This version of the
            project (01) has the accession number NZ_JAFEOY010000000, and
            consists of sequences JAFEOY010000001-JAFEOY010000026.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: CLC NGS Cell v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1006x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016893065.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,918
            CDSs (total)                      :: 2,855
            Genes (coding)                    :: 2,826
            CDSs (with protein)               :: 2,826
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 5 of 29
            Pseudo Genes (incomplete)         :: 19 of 29
            Pseudo Genes (internal stop)      :: 6 of 29
            Pseudo Genes (multiple problems)  :: 1 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2852730
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDK8D41P"
                     /host="duck"
                     /db_xref="taxon:1296"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2018-05-31"
WGS         JAFEOY010000001-JAFEOY010000026
WGS_SCAFLD  NZ_JAFEOY010000001-NZ_JAFEOY010000026
//
LOCUS       NZ_VSTM01000000      1984508 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain NT15_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VSTM00000000
VERSION     NZ_VSTM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616967
            Assembly: GCF_009865785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1984508)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1984508)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSTM00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSTM00000000.  This version of the
            project (01) has the accession number NZ_VSTM01000000, and consists
            of sequences VSTM01000001-VSTM01000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009865785.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:49:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,966
            CDSs (total)                      :: 1,911
            Genes (coding)                    :: 1,874
            CDSs (with protein)               :: 1,874
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 20 of 37
            Pseudo Genes (incomplete)         :: 13 of 37
            Pseudo Genes (internal stop)      :: 16 of 37
            Pseudo Genes (multiple problems)  :: 11 of 37
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984508
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="NT15_1"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSTM01000001-VSTM01000042
WGS_SCAFLD  NZ_VSTM01000001-NZ_VSTM01000042
//
LOCUS       NZ_VSWA01000000      1966387 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain E6_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VSWA00000000
VERSION     NZ_VSWA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616900
            Assembly: GCF_009863915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1966387)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1966387)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSWA00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSWA00000000.  This version of the
            project (01) has the accession number NZ_VSWA01000000, and consists
            of sequences VSWA01000001-VSWA01000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009863915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:52:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,950
            CDSs (total)                      :: 1,911
            Genes (coding)                    :: 1,871
            CDSs (with protein)               :: 1,871
            Genes (RNA)                       :: 39
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 31
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 16 of 40
            Pseudo Genes (incomplete)         :: 18 of 40
            Pseudo Genes (internal stop)      :: 11 of 40
            Pseudo Genes (multiple problems)  :: 4 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966387
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="E6_1"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSWA01000001-VSWA01000046
WGS_SCAFLD  NZ_VSWA01000001-NZ_VSWA01000046
//
LOCUS       NZ_JAFNLX010000000   2709791 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain 21_11_F9_SW, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFNLX000000000
VERSION     NZ_JAFNLX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18206619
            Assembly: GCF_017368765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2709791)
  AUTHORS   Fountain,K.
  TITLE     Staphylococci and Mammaliicocci in bats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2709791)
  AUTHORS   Fountain,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2021) Biology and Biochemistry, University of
            Bath, Claverton Down, Bath BA2 7AY, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFNLX000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFNLX000000000.  This version of the
            project (01) has the accession number NZ_JAFNLX010000000, and
            consists of sequences JAFNLX010000001-JAFNLX010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017368765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:35:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,705
            CDSs (total)                      :: 2,639
            Genes (coding)                    :: 2,618
            CDSs (with protein)               :: 2,618
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709791
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="21_11_F9_SW"
                     /host="Pteropus livingstonii"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Jersey"
                     /collection_date="2017-11-21"
WGS         JAFNLX010000001-JAFNLX010000011
WGS_SCAFLD  NZ_JAFNLX010000001-NZ_JAFNLX010000011
//
LOCUS       NZ_VSVW01000000      1942679 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain FCQHC8_L1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VSVW00000000
VERSION     NZ_VSVW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616904
            Assembly: GCF_009863835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1942679)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1942679)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSVW00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSVW00000000.  This version of the
            project (01) has the accession number NZ_VSVW01000000, and consists
            of sequences VSVW01000001-VSVW01000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009863835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:55:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,902
            CDSs (total)                      :: 1,868
            Genes (coding)                    :: 1,828
            CDSs (with protein)               :: 1,828
            Genes (RNA)                       :: 34
            rRNAs                             :: 2, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 27
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 20 of 40
            Pseudo Genes (incomplete)         :: 16 of 40
            Pseudo Genes (internal stop)      :: 15 of 40
            Pseudo Genes (multiple problems)  :: 10 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942679
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="FCQHC8_L1"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSVW01000001-VSVW01000044
WGS_SCAFLD  NZ_VSVW01000001-NZ_VSVW01000044
//
LOCUS       NZ_VSTK01000000      1910097 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ligilactobacillus salivarius strain NT4_8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VSTK00000000
VERSION     NZ_VSTK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12616969
            Assembly: GCF_009865735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ligilactobacillus salivarius
  ORGANISM  Ligilactobacillus salivarius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Ligilactobacillus.
REFERENCE   1  (bases 1 to 1910097)
  AUTHORS   Zhai,Q., Shen,X., Cen,S., Zhang,C., Tian,F., Zhao,J., Zhang,H.,
            Xue,Y. and Chen,W.
  TITLE     Screening of Lactobacillus salivarius strains from the feces of
            Chinese populations and the evaluation of their effects against
            intestinal inflammation in mice
  JOURNAL   Food Funct 11 (1), 221-235 (2020)
   PUBMED   31915776
REFERENCE   2  (bases 1 to 1910097)
  AUTHORS   Zhai,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-AUG-2019) School of Food Science and Technology,
            Jiangnan University, Jiangnan University, No. 1800 Lihu Ave., Wuxi,
            Jiangsu 214000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VSTK00000000.1.
            The Ligilactobacillus salivarius whole genome shotgun (WGS) project
            has the project accession NZ_VSTK00000000.  This version of the
            project (01) has the accession number NZ_VSTK01000000, and consists
            of sequences VSTK01000001-VSTK01000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009865735.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:55:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,933
            CDSs (total)                      :: 1,887
            Genes (coding)                    :: 1,847
            CDSs (with protein)               :: 1,847
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 17 of 40
            Pseudo Genes (incomplete)         :: 18 of 40
            Pseudo Genes (internal stop)      :: 9 of 40
            Pseudo Genes (multiple problems)  :: 4 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910097
                     /organism="Ligilactobacillus salivarius"
                     /mol_type="genomic DNA"
                     /strain="NT4_8"
                     /host="Homo sapiens"
                     /db_xref="taxon:1624"
                     /geo_loc_name="China"
WGS         VSTK01000001-VSTK01000054
WGS_SCAFLD  NZ_VSTK01000001-NZ_VSTK01000054
//
LOCUS       NZ_JAFESI010000000   2848787 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDK8D33P, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFESI000000000
VERSION     NZ_JAFESI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17385710
            Assembly: GCF_016891645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2848787)
  AUTHORS   Chen,L.
  TITLE     cfr and optrA-positive Staphylococcus spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2848787)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2021) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Guangzhou, Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFESI000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFESI000000000.  This version of the
            project (01) has the accession number NZ_JAFESI010000000, and
            consists of sequences JAFESI010000001-JAFESI010000028.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: CLC NGS Cell v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1006x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016891645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,901
            CDSs (total)                      :: 2,838
            Genes (coding)                    :: 2,812
            CDSs (with protein)               :: 2,812
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 9 of 26
            Pseudo Genes (incomplete)         :: 13 of 26
            Pseudo Genes (internal stop)      :: 6 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848787
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDK8D33P"
                     /host="duck"
                     /db_xref="taxon:1296"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2018-05-31"
WGS         JAFESI010000001-JAFESI010000028
WGS_SCAFLD  NZ_JAFESI010000001-NZ_JAFESI010000028
//
LOCUS       NZ_JAFEOK010000000   2837376 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDX8P14P, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFEOK000000000
VERSION     NZ_JAFEOK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17386231
            Assembly: GCF_016892745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2837376)
  AUTHORS   Chen,L.
  TITLE     optrA-positive Staphylococcus spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2837376)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2021) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Guangzhou, Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFEOK000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFEOK000000000.  This version of the
            project (01) has the accession number NZ_JAFEOK010000000, and
            consists of sequences JAFEOK010000001-JAFEOK010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: CLC NGS Cell v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1006x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016892745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:37:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,900
            CDSs (total)                      :: 2,836
            Genes (coding)                    :: 2,806
            CDSs (with protein)               :: 2,806
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 2 of 30
            Pseudo Genes (incomplete)         :: 24 of 30
            Pseudo Genes (internal stop)      :: 6 of 30
            Pseudo Genes (multiple problems)  :: 2 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837376
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDX8P14P"
                     /host="pig"
                     /db_xref="taxon:1296"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2018-12-27"
WGS         JAFEOK010000001-JAFEOK010000015
WGS_SCAFLD  NZ_JAFEOK010000001-NZ_JAFEOK010000015
//
LOCUS       NZ_JAFEOC010000000   2805354 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDX8P100P, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFEOC000000000
VERSION     NZ_JAFEOC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17386239
            Assembly: GCF_016892355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2805354)
  AUTHORS   Chen,L.
  TITLE     optrA-positive Staphylococcus spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2805354)
  AUTHORS   Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JAN-2021) College of Veterinary Medicine, South China
            Agricultural University, Wushan, Guangzhou, Guangdong 510642, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFEOC000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFEOC000000000.  This version of the
            project (01) has the accession number NZ_JAFEOC010000000, and
            consists of sequences JAFEOC010000001-JAFEOC010000020.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: CLC NGS Cell v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1006x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016892355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:37:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,853
            CDSs (total)                      :: 2,791
            Genes (coding)                    :: 2,761
            CDSs (with protein)               :: 2,761
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 1 of 30
            Pseudo Genes (incomplete)         :: 25 of 30
            Pseudo Genes (internal stop)      :: 5 of 30
            Pseudo Genes (multiple problems)  :: 1 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2805354
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDX8P100P"
                     /isolation_source="environment"
                     /db_xref="taxon:1296"
                     /geo_loc_name="China: Guangdong"
                     /collection_date="2018-12-27"
WGS         JAFEOC010000001-JAFEOC010000020
WGS_SCAFLD  NZ_JAFEOC010000001-NZ_JAFEOC010000020
//
LOCUS       NZ_WUAY01000000      2513815 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis subsp. lactis strain LEY13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WUAY00000000
VERSION     NZ_WUAY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13634617
            Assembly: GCF_018195735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis subsp. lactis
  ORGANISM  Lactococcus lactis subsp. lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2513815)
  AUTHORS   Redruello,B., Saidi,Y., Sampedro,L., Ladero,V., Del Rio,B. and
            Alvarez,M.A.
  TITLE     GABA-Producing Lactococcus lactis Strains Isolated from Camel's
            Milk as Starters for the Production of GABA-Enriched Cheese
  JOURNAL   Foods 10 (3), 633 (2021)
   PUBMED   33802798
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513815)
  AUTHORS   Del Rio,B., Saidi,Y., Redruello,B., Ladero,V. and Alvarez,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2019) Technology and Biotechnology of Dairy
            Products, Dairy Research Institute (IPLA-CSIC), Paseo Rio Linares
            s/n, Villaviciosa, Asturias 33300, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WUAY00000000.1.
            The Lactococcus lactis subsp. lactis whole genome shotgun (WGS)
            project has the project accession NZ_WUAY00000000.  This version of
            the project (01) has the accession number NZ_WUAY01000000, and
            consists of sequences WUAY01000001-WUAY01000034.
            Annotation modified by submitter. The annotation was added by the
            NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information
            about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 28-MAY-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018195735.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:37:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,522
            CDSs (total)                      :: 2,457
            Genes (coding)                    :: 2,412
            CDSs (with protein)               :: 2,412
            Genes (RNA)                       :: 65
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 13 of 45
            Pseudo Genes (incomplete)         :: 32 of 45
            Pseudo Genes (internal stop)      :: 9 of 45
            Pseudo Genes (multiple problems)  :: 8 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513815
                     /organism="Lactococcus lactis subsp. lactis"
                     /mol_type="genomic DNA"
                     /strain="LEY13"
                     /isolation_source="milk"
                     /host="camel"
                     /sub_species="lactis"
                     /db_xref="taxon:1360"
                     /geo_loc_name="Algeria"
                     /collection_date="2018-02-01"
WGS         WUAY01000001-WUAY01000034
WGS_SCAFLD  NZ_WUAY01000001-NZ_WUAY01000034
//
LOCUS       NZ_JAJGUR010000000   2368486 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Limosilactobacillus reuteri strain LTM_Jesus_5_1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJGUR000000000
VERSION     NZ_JAJGUR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22258626
            Assembly: GCF_020785035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Limosilactobacillus reuteri
  ORGANISM  Limosilactobacillus reuteri
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Limosilactobacillus.
REFERENCE   1  (bases 1 to 2368486)
  AUTHORS   Zheng,J., Li,F., Gaenzle,M. and Walter,J.
  TITLE     Evolutionary history and lifestyle of the vertebrate symbiont
            Limosilactobacillus reuteri
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2368486)
  AUTHORS   Zheng,J., Li,F., Gaenzle,M. and Walter,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-OCT-2021) State Key Laboratory of Agricultural
            Microbiology, Huazhong Agricultural University, 1st Shizishan,
            Wuhan, Hubei 430070, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJGUR000000000.1.
            The Limosilactobacillus reuteri whole genome shotgun (WGS) project
            has the project accession NZ_JAJGUR000000000.  This version of the
            project (01) has the accession number NZ_JAJGUR010000000, and
            consists of sequences JAJGUR010000001-JAJGUR010000135.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020785035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:40:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,413
            CDSs (total)                      :: 2,322
            Genes (coding)                    :: 2,273
            CDSs (with protein)               :: 2,273
            Genes (RNA)                       :: 91
            rRNAs                             :: 7, 10, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 10, 2 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 6 of 49
            Pseudo Genes (incomplete)         :: 44 of 49
            Pseudo Genes (internal stop)      :: 1 of 49
            Pseudo Genes (multiple problems)  :: 1 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368486
                     /organism="Limosilactobacillus reuteri"
                     /mol_type="genomic DNA"
                     /strain="LTM_Jesus_5_1"
                     /host="Lion-tailed Macaque"
                     /db_xref="taxon:1598"
                     /geo_loc_name="USA: California"
                     /collection_date="2014-02"
WGS         JAJGUR010000001-JAJGUR010000135
WGS_SCAFLD  NZ_JAJGUR010000001-NZ_JAJGUR010000135
//
LOCUS       NZ_RBYQ01000000      2850815 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Listeria innocua strain Lin13-013, whole genome shotgun sequencing
            project.
ACCESSION   NZ_RBYQ00000000
VERSION     NZ_RBYQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10147605
            Assembly: GCF_016881925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Listeria innocua
  ORGANISM  Listeria innocua
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2850815)
  AUTHORS   Fox,E.
  TITLE     Phenotypic and genotypic analysis of heavy metal resistance in
            Listeria species isolated from the dairy farm environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2850815)
  AUTHORS   Fox,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2018) Agriculture and Food, CSIRO, 671 Sneydes
            Road, Werribee VIC 3030, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RBYQ00000000.1.
            The Listeria innocua whole genome shotgun (WGS) project has the
            project accession NZ_RBYQ00000000.  This version of the project
            (01) has the accession number NZ_RBYQ01000000, and consists of
            sequences RBYQ01000001-RBYQ01000069.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 2.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016881925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:38:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,947
            CDSs (total)                      :: 2,872
            Genes (coding)                    :: 2,837
            CDSs (with protein)               :: 2,837
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 7, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 7, 3 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 9 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 6 of 35
            Pseudo Genes (multiple problems)  :: 1 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2850815
                     /organism="Listeria innocua"
                     /mol_type="genomic DNA"
                     /strain="Lin13-013"
                     /isolation_source="dairy farm"
                     /db_xref="taxon:1642"
                     /geo_loc_name="Australia: Victoria"
                     /collection_date="2013"
WGS         RBYQ01000001-RBYQ01000069
WGS_SCAFLD  NZ_RBYQ01000001-NZ_RBYQ01000069
//
LOCUS       NZ_JAFNLY010000000   2713294 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain 22_11_9_LW, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFNLY000000000
VERSION     NZ_JAFNLY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18206620
            Assembly: GCF_017368535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2713294)
  AUTHORS   Fountain,K.
  TITLE     Staphylococci and Mammaliicocci in bats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2713294)
  AUTHORS   Fountain,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2021) Biology and Biochemistry, University of
            Bath, Claverton Down, Bath BA2 7AY, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFNLY000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JAFNLY000000000.  This version of the
            project (01) has the accession number NZ_JAFNLY010000000, and
            consists of sequences JAFNLY010000001-JAFNLY010000012.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017368535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:44:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,704
            CDSs (total)                      :: 2,638
            Genes (coding)                    :: 2,617
            CDSs (with protein)               :: 2,617
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 7 of 21
            Pseudo Genes (incomplete)         :: 15 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 3 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2713294
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="22_11_9_LW"
                     /host="Pteropus livingstonii"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Jersey"
                     /collection_date="2017-11-22"
WGS         JAFNLY010000001-JAFNLY010000012
WGS_SCAFLD  NZ_JAFNLY010000001-NZ_JAFNLY010000012
//
LOCUS       NZ_CAJVGN010000000   2898343 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain IMDO-S72, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CAJVGN000000000
VERSION     NZ_CAJVGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA8963170
            Assembly: GCF_911094105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2898343)
  AUTHORS   Weckx,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) VRIJE UNIVERSITEIT BRUSSEL, Industrial
            Microbiology and Food Biotechnology (IMDO), Pleinlaan 2, B-1050
            Brussel, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJVGN000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_CAJVGN000000000.  This version of the
            project (01) has the accession number NZ_CAJVGN010000000, and
            consists of sequences CAJVGN010000001-CAJVGN010000005.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_911094105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:52:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,928
            CDSs (total)                      :: 2,847
            Genes (coding)                    :: 2,821
            CDSs (with protein)               :: 2,821
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 3 of 26
            Pseudo Genes (incomplete)         :: 21 of 26
            Pseudo Genes (internal stop)      :: 6 of 26
            Pseudo Genes (multiple problems)  :: 4 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2898343
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="IMDO-S72"
                     /isolation_source="fermented meat"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Belgium"
                     /collected_by="Vrije Universiteit Brussel, Research group
                     of Industrial Microbiology and Food Biotechnology (IMDO)"
WGS         CAJVGN010000001-CAJVGN010000005
WGS_SCAFLD  NZ_CAJVGN010000001-NZ_CAJVGN010000005
//
LOCUS       NZ_CAKOCK010000000   2582571 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis isolate Lactococcus_lactis_DSM110082, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAKOCK000000000
VERSION     NZ_CAKOCK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13256549
            Assembly: GCF_932750895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis
  ORGANISM  Lactococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2582571)
  AUTHORS   Treichel,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2022) RWTH Aachen University Hospital, Functional
            Microbiome Research Group, Pauwelsstrasse 30, 52074 Aachen, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKOCK000000000.1.
            The Lactococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_CAKOCK000000000.  This version of the project
            (01) has the accession number NZ_CAKOCK010000000, and consists of
            sequences CAKOCK010000001-CAKOCK010000070.
            Genome of pure isolate Lactococcus_lactis_DSM110082 cultured from
            mouse cecal content.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_932750895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:09:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,606
            CDSs (total)                      :: 2,542
            Genes (coding)                    :: 2,499
            CDSs (with protein)               :: 2,499
            Genes (RNA)                       :: 64
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 18 of 43
            Pseudo Genes (incomplete)         :: 24 of 43
            Pseudo Genes (internal stop)      :: 4 of 43
            Pseudo Genes (multiple problems)  :: 2 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582571
                     /organism="Lactococcus lactis"
                     /mol_type="genomic DNA"
                     /isolate="Lactococcus_lactis_DSM110082"
                     /isolation_source="gut content"
                     /db_xref="taxon:1358"
WGS         CAKOCK010000001-CAKOCK010000070
WGS_SCAFLD  NZ_CAKOCK010000001-NZ_CAKOCK010000070
//
LOCUS       NZ_JALGXH010000000   2833543 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDQ20D70P_16, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGXH000000000
VERSION     NZ_JALGXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27064488
            Assembly: GCF_022815065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2833543)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2833543)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGXH000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGXH000000000.  This version of the
            project (01) has the accession number NZ_JALGXH010000000, and
            consists of sequences JALGXH010000001-JALGXH010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815065.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:11:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,880
            CDSs (total)                      :: 2,819
            Genes (coding)                    :: 2,791
            CDSs (with protein)               :: 2,791
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 7 of 28
            Pseudo Genes (incomplete)         :: 20 of 28
            Pseudo Genes (internal stop)      :: 4 of 28
            Pseudo Genes (multiple problems)  :: 2 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833543
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDQ20D70P_16"
                     /isolation_source="nasal swab"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGXH010000001-JALGXH010000030
WGS_SCAFLD  NZ_JALGXH010000001-NZ_JALGXH010000030
//
LOCUS       NZ_JAKUHM010000000   4604145 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira interrogans strain KR84, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKUHM000000000
VERSION     NZ_JAKUHM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185630
            Assembly: GCF_022436545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira interrogans
  ORGANISM  Leptospira interrogans
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 4604145)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Comparative genomic analysis of European sttrains of Leptospira
            interrogans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4604145)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Center for Experimental and Innovative
            Medicine, University of Agriculture in Krakow, Mickiewicza 21,
            Krakow 31-120, Poland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKUHM000000000.1.
            The Leptospira interrogans whole genome shotgun (WGS) project has
            the project accession NZ_JAKUHM000000000.  This version of the
            project (01) has the accession number NZ_JAKUHM010000000, and
            consists of sequences JAKUHM010000001-JAKUHM010000009.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 22-JAN-2022
            Assembly Method           :: SPAdes v. 3.13.1
            Genome Representation     :: Full
            Expected Final Version    :: No
            Reference-guided Assembly :: GCA_001293065.1
            Genome Coverage           :: 41.79584375x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022436545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:13:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,907
            CDSs (total)                      :: 3,865
            Genes (coding)                    :: 3,675
            CDSs (with protein)               :: 3,675
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 190
            CDSs (without protein)            :: 190
            Pseudo Genes (ambiguous residues) :: 0 of 190
            Pseudo Genes (frameshifted)       :: 125 of 190
            Pseudo Genes (incomplete)         :: 94 of 190
            Pseudo Genes (internal stop)      :: 38 of 190
            Pseudo Genes (multiple problems)  :: 53 of 190
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4604145
                     /organism="Leptospira interrogans"
                     /mol_type="genomic DNA"
                     /strain="KR84"
                     /serovar="Hardjo"
                     /host="Wallaby"
                     /db_xref="taxon:173"
                     /geo_loc_name="United Kingdom"
                     /collection_date="1983"
WGS         JAKUHM010000001-JAKUHM010000009
WGS_SCAFLD  NZ_JAKUHM010000001-NZ_JAKUHM010000009
//
LOCUS       NZ_JALGPH010000000   2716724 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDQ20D70P_4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGPH000000000
VERSION     NZ_JALGPH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27022988
            Assembly: GCF_022810165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2716724)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Amuasi,G.R., Amoa,F.A. and Dsani,E.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2716724)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Amuasi,G.R., Amoa,F.A. and Dsani,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGPH000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGPH000000000.  This version of the
            project (01) has the accession number NZ_JALGPH010000000, and
            consists of sequences JALGPH010000001-JALGPH010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 46x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022810165.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:15:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,707
            CDSs (total)                      :: 2,648
            Genes (coding)                    :: 2,625
            CDSs (with protein)               :: 2,625
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 4 of 23
            Pseudo Genes (incomplete)         :: 16 of 23
            Pseudo Genes (internal stop)      :: 4 of 23
            Pseudo Genes (multiple problems)  :: 1 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716724
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDQ20D70P_4"
                     /isolation_source="nasal swab"
                     /host="Capra aegagrus hircus"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGPH010000001-JALGPH010000016
WGS_SCAFLD  NZ_JALGPH010000001-NZ_JALGPH010000016
//
LOCUS       NZ_JAKUHO010000000   4583177 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira interrogans strain N116, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKUHO000000000
VERSION     NZ_JAKUHO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185628
            Assembly: GCF_022436565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira interrogans
  ORGANISM  Leptospira interrogans
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 4583177)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Comparative genomic analysis of European sttrains of Leptospira
            interrogans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4583177)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Center for Experimental and Innovative
            Medicine, University of Agriculture in Krakow, Mickiewicza 21,
            Krakow 31-120, Poland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKUHO000000000.1.
            The Leptospira interrogans whole genome shotgun (WGS) project has
            the project accession NZ_JAKUHO000000000.  This version of the
            project (01) has the accession number NZ_JAKUHO010000000, and
            consists of sequences JAKUHO010000001-JAKUHO010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 22-JAN-2022
            Assembly Method           :: SPAdes v. 3.13.1
            Genome Representation     :: Full
            Expected Final Version    :: No
            Reference-guided Assembly :: GCA_001293065.1
            Genome Coverage           :: 54.792890625x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022436565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:14:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,901
            CDSs (total)                      :: 3,860
            Genes (coding)                    :: 3,669
            CDSs (with protein)               :: 3,669
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1 (5S, 16S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 191
            CDSs (without protein)            :: 191
            Pseudo Genes (ambiguous residues) :: 0 of 191
            Pseudo Genes (frameshifted)       :: 125 of 191
            Pseudo Genes (incomplete)         :: 99 of 191
            Pseudo Genes (internal stop)      :: 36 of 191
            Pseudo Genes (multiple problems)  :: 55 of 191
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4583177
                     /organism="Leptospira interrogans"
                     /mol_type="genomic DNA"
                     /strain="N116"
                     /serovar="Hardjo"
                     /host="bovine"
                     /db_xref="taxon:173"
                     /geo_loc_name="Belgium"
                     /collection_date="2016"
WGS         JAKUHO010000001-JAKUHO010000004
WGS_SCAFLD  NZ_JAKUHO010000001-NZ_JAKUHO010000004
//
LOCUS       NZ_JALGPJ010000000   2722052 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain SSC-7107_6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGPJ000000000
VERSION     NZ_JALGPJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27022990
            Assembly: GCF_022810115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2722052)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Amuasi,G.R., Amoa,F.A. and Dsani,E.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2722052)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Amuasi,G.R., Amoa,F.A. and Dsani,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGPJ000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGPJ000000000.  This version of the
            project (01) has the accession number NZ_JALGPJ010000000, and
            consists of sequences JALGPJ010000001-JALGPJ010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022810115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:16:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,720
            CDSs (total)                      :: 2,659
            Genes (coding)                    :: 2,640
            CDSs (with protein)               :: 2,640
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 3 of 19
            Pseudo Genes (incomplete)         :: 16 of 19
            Pseudo Genes (internal stop)      :: 2 of 19
            Pseudo Genes (multiple problems)  :: 1 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722052
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="SSC-7107_6"
                     /isolation_source="nasal swab"
                     /host="Capra aegagrus hircus"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGPJ010000001-JALGPJ010000018
WGS_SCAFLD  NZ_JALGPJ010000001-NZ_JALGPJ010000018
//
LOCUS       NZ_JAKUHN010000000   4577626 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira interrogans strain KR40, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKUHN000000000
VERSION     NZ_JAKUHN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185629
            Assembly: GCF_022436445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira interrogans
  ORGANISM  Leptospira interrogans
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 4577626)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Comparative genomic analysis of European sttrains of Leptospira
            interrogans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4577626)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Center for Experimental and Innovative
            Medicine, University of Agriculture in Krakow, Mickiewicza 21,
            Krakow 31-120, Poland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKUHN000000000.1.
            The Leptospira interrogans whole genome shotgun (WGS) project has
            the project accession NZ_JAKUHN000000000.  This version of the
            project (01) has the accession number NZ_JAKUHN010000000, and
            consists of sequences JAKUHN010000001-JAKUHN010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 22-JAN-2022
            Assembly Method           :: SPAdes v. 3.13.1
            Genome Representation     :: Full
            Expected Final Version    :: No
            Reference-guided Assembly :: GCA_001293065.1
            Genome Coverage           :: 46.323296875x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022436445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:13:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,891
            CDSs (total)                      :: 3,850
            Genes (coding)                    :: 3,652
            CDSs (with protein)               :: 3,652
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 131 of 198
            Pseudo Genes (incomplete)         :: 95 of 198
            Pseudo Genes (internal stop)      :: 38 of 198
            Pseudo Genes (multiple problems)  :: 52 of 198
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4577626
                     /organism="Leptospira interrogans"
                     /mol_type="genomic DNA"
                     /strain="KR40"
                     /serovar="Hardjo"
                     /host="equine"
                     /db_xref="taxon:173"
                     /geo_loc_name="Italy"
                     /collection_date="1997"
WGS         JAKUHN010000001-JAKUHN010000006
WGS_SCAFLD  NZ_JAKUHN010000001-NZ_JAKUHN010000006
//
LOCUS       NZ_JAKUHL010000000   4609556 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leptospira interrogans strain KR85, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKUHL000000000
VERSION     NZ_JAKUHL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185631
            Assembly: GCF_022436605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leptospira interrogans
  ORGANISM  Leptospira interrogans
            Bacteria; Pseudomonadati; Spirochaetota; Leptospiria;
            Leptospirales; Leptospiraceae; Leptospira.
REFERENCE   1  (bases 1 to 4609556)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Comparative genomic analysis of European sttrains of Leptospira
            interrogans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4609556)
  AUTHORS   Arent,Z., Gurgul,A., Jasielczuk,I., Dubniewicz,K. and Pardyak,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Center for Experimental and Innovative
            Medicine, University of Agriculture in Krakow, Mickiewicza 21,
            Krakow 31-120, Poland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKUHL000000000.1.
            The Leptospira interrogans whole genome shotgun (WGS) project has
            the project accession NZ_JAKUHL000000000.  This version of the
            project (01) has the accession number NZ_JAKUHL010000000, and
            consists of sequences JAKUHL010000001-JAKUHL010000007.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 22-JAN-2022
            Assembly Method           :: SPAdes v. 3.13.1
            Genome Representation     :: Full
            Expected Final Version    :: No
            Reference-guided Assembly :: GCA_001293065.1
            Genome Coverage           :: 41.497703125x
            Sequencing Technology     :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022436605.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:12:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,922
            CDSs (total)                      :: 3,880
            Genes (coding)                    :: 3,682
            CDSs (with protein)               :: 3,682
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 123 of 198
            Pseudo Genes (incomplete)         :: 105 of 198
            Pseudo Genes (internal stop)      :: 36 of 198
            Pseudo Genes (multiple problems)  :: 53 of 198
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4609556
                     /organism="Leptospira interrogans"
                     /mol_type="genomic DNA"
                     /strain="KR85"
                     /serovar="Hardjo"
                     /host="dog"
                     /db_xref="taxon:173"
                     /geo_loc_name="United Kingdom"
                     /collection_date="1982"
WGS         JAKUHL010000001-JAKUHL010000007
WGS_SCAFLD  NZ_JAKUHL010000001-NZ_JAKUHL010000007
//
LOCUS       NZ_JALGXJ010000000   2741508 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDQ20D70P_14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGXJ000000000
VERSION     NZ_JALGXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27064486
            Assembly: GCF_022815225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2741508)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2741508)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGXJ000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGXJ000000000.  This version of the
            project (01) has the accession number NZ_JALGXJ010000000, and
            consists of sequences JALGXJ010000001-JALGXJ010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 77x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:12:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,729
            CDSs (total)                      :: 2,671
            Genes (coding)                    :: 2,640
            CDSs (with protein)               :: 2,640
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 2 of 31
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2741508
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDQ20D70P_14"
                     /isolation_source="nasal swab"
                     /host="Capra aegagrus hircus"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGXJ010000001-JALGXJ010000027
WGS_SCAFLD  NZ_JALGXJ010000001-NZ_JALGXJ010000027
//
LOCUS       NZ_JAOWLO010000000   2601518 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis strain 593, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOWLO000000000
VERSION     NZ_JAOWLO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31221616
            Assembly: GCF_029667185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis
  ORGANISM  Lactococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2601518)
  AUTHORS   Huang,W., Dong,A., Pham,H.T., Zhou,C., Huo,Z., Watjen,A.P.,
            Prakash,S., Bang-Berthelsen,C.H. and Turner,M.S.
  TITLE     Evaluation of the fermentation potential of lactic acid bacteria
            isolated from herbs, fruits and vegetables as starter cultures in
            nut-based milk alternatives
  JOURNAL   Food Microbiol 112, 104243 (2023)
   PUBMED   36906309
REFERENCE   2  (bases 1 to 2601518)
  AUTHORS   Turner,M.S. and Huang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2022) School of Agriculture and Food Sciences,
            The University of Queensland, Keyhole road, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOWLO000000000.1.
            The Lactococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAOWLO000000000.  This version of the project
            (01) has the accession number NZ_JAOWLO010000000, and consists of
            sequences JAOWLO010000001-JAOWLO010000034.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. JUNE-2022
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1341x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029667185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:01:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,577
            CDSs (total)                      :: 2,515
            Genes (coding)                    :: 2,480
            CDSs (with protein)               :: 2,480
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 13 of 35
            Pseudo Genes (incomplete)         :: 18 of 35
            Pseudo Genes (internal stop)      :: 11 of 35
            Pseudo Genes (multiple problems)  :: 6 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601518
                     /organism="Lactococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="593"
                     /isolation_source="Dragon bean"
                     /db_xref="taxon:1358"
                     /geo_loc_name="Australia"
                     /collection_date="2010"
WGS         JAOWLO010000001-JAOWLO010000034
WGS_SCAFLD  NZ_JAOWLO010000001-NZ_JAOWLO010000034
//
LOCUS       NZ_JALGXL010000000   2837386 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDQ20D70P_12, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGXL000000000
VERSION     NZ_JALGXL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27064484
            Assembly: GCF_022814975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2837386)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2837386)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGXL000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGXL000000000.  This version of the
            project (01) has the accession number NZ_JALGXL010000000, and
            consists of sequences JALGXL010000001-JALGXL010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 92x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022814975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:16:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,884
            CDSs (total)                      :: 2,823
            Genes (coding)                    :: 2,792
            CDSs (with protein)               :: 2,792
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 7 of 31
            Pseudo Genes (incomplete)         :: 20 of 31
            Pseudo Genes (internal stop)      :: 10 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837386
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDQ20D70P_12"
                     /isolation_source="nasal swab"
                     /host="Ovis aries"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGXL010000001-JALGXL010000022
WGS_SCAFLD  NZ_JALGXL010000001-NZ_JALGXL010000022
//
LOCUS       NZ_JALGPI010000000   2821333 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain SSC-7107_5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGPI000000000
VERSION     NZ_JALGPI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27022989
            Assembly: GCF_022810185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2821333)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Amuasi,G.R., Amoa,F.A. and Dsani,E.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2821333)
  AUTHORS   Egyir,B., Owusu-Nyantakyi,C., Amuasi,G.R., Amoa,F.A. and Dsani,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGPI000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGPI000000000.  This version of the
            project (01) has the accession number NZ_JALGPI010000000, and
            consists of sequences JALGPI010000001-JALGPI010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 56x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022810185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:18:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,837
            CDSs (total)                      :: 2,776
            Genes (coding)                    :: 2,748
            CDSs (with protein)               :: 2,748
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 6 of 28
            Pseudo Genes (incomplete)         :: 22 of 28
            Pseudo Genes (internal stop)      :: 5 of 28
            Pseudo Genes (multiple problems)  :: 4 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821333
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="SSC-7107_5"
                     /isolation_source="nasal swab"
                     /host="Bos taurus"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGPI010000001-JALGPI010000019
WGS_SCAFLD  NZ_JALGPI010000001-NZ_JALGPI010000019
//
LOCUS       NZ_JAOWLN010000000   2442624 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis strain 804, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOWLN000000000
VERSION     NZ_JAOWLN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31221617
            Assembly: GCF_029664465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis
  ORGANISM  Lactococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2442624)
  AUTHORS   Huang,W., Dong,A., Pham,H.T., Zhou,C., Huo,Z., Watjen,A.P.,
            Prakash,S., Bang-Berthelsen,C.H. and Turner,M.S.
  TITLE     Evaluation of the fermentation potential of lactic acid bacteria
            isolated from herbs, fruits and vegetables as starter cultures in
            nut-based milk alternatives
  JOURNAL   Food Microbiol 112, 104243 (2023)
   PUBMED   36906309
REFERENCE   2  (bases 1 to 2442624)
  AUTHORS   Turner,M.S. and Huang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2022) School of Agriculture and Food Sciences,
            The University of Queensland, Keyhole road, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOWLN000000000.1.
            The Lactococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAOWLN000000000.  This version of the project
            (01) has the accession number NZ_JAOWLN010000000, and consists of
            sequences JAOWLN010000001-JAOWLN010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. JUNE-2022
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1310x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029664465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:00:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,410
            CDSs (total)                      :: 2,349
            Genes (coding)                    :: 2,316
            CDSs (with protein)               :: 2,316
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 12 of 33
            Pseudo Genes (incomplete)         :: 18 of 33
            Pseudo Genes (internal stop)      :: 6 of 33
            Pseudo Genes (multiple problems)  :: 3 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2442624
                     /organism="Lactococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="804"
                     /isolation_source="Bean Sprouts"
                     /db_xref="taxon:1358"
                     /geo_loc_name="Australia"
                     /collection_date="2010"
WGS         JAOWLN010000001-JAOWLN010000029
WGS_SCAFLD  NZ_JAOWLN010000001-NZ_JAOWLN010000029
//
LOCUS       NZ_JAOWLT010000000   2632911 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis strain 284, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOWLT000000000
VERSION     NZ_JAOWLT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31221611
            Assembly: GCF_029664525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis
  ORGANISM  Lactococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2632911)
  AUTHORS   Huang,W., Dong,A., Pham,H.T., Zhou,C., Huo,Z., Watjen,A.P.,
            Prakash,S., Bang-Berthelsen,C.H. and Turner,M.S.
  TITLE     Evaluation of the fermentation potential of lactic acid bacteria
            isolated from herbs, fruits and vegetables as starter cultures in
            nut-based milk alternatives
  JOURNAL   Food Microbiol 112, 104243 (2023)
   PUBMED   36906309
REFERENCE   2  (bases 1 to 2632911)
  AUTHORS   Turner,M.S. and Huang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2022) School of Agriculture and Food Sciences,
            The University of Queensland, Keyhole road, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOWLT000000000.1.
            The Lactococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAOWLT000000000.  This version of the project
            (01) has the accession number NZ_JAOWLT010000000, and consists of
            sequences JAOWLT010000001-JAOWLT010000061.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. JUNE-2022
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1222x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029664525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:58:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,658
            CDSs (total)                      :: 2,591
            Genes (coding)                    :: 2,546
            CDSs (with protein)               :: 2,546
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 12 of 45
            Pseudo Genes (incomplete)         :: 31 of 45
            Pseudo Genes (internal stop)      :: 5 of 45
            Pseudo Genes (multiple problems)  :: 3 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632911
                     /organism="Lactococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="284"
                     /isolation_source="Mint"
                     /db_xref="taxon:1358"
                     /geo_loc_name="Australia"
                     /collection_date="2010"
WGS         JAOWLT010000001-JAOWLT010000061
WGS_SCAFLD  NZ_JAOWLT010000001-NZ_JAOWLT010000061
//
LOCUS       NZ_JALGXK010000000   2842445 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDQ20D70P_13, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGXK000000000
VERSION     NZ_JALGXK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27064485
            Assembly: GCF_022815245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2842445)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2842445)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGXK000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGXK000000000.  This version of the
            project (01) has the accession number NZ_JALGXK010000000, and
            consists of sequences JALGXK010000001-JALGXK010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 74x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815245.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:17:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,862
            CDSs (total)                      :: 2,804
            Genes (coding)                    :: 2,777
            CDSs (with protein)               :: 2,777
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 6 of 27
            Pseudo Genes (incomplete)         :: 17 of 27
            Pseudo Genes (internal stop)      :: 6 of 27
            Pseudo Genes (multiple problems)  :: 2 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2842445
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDQ20D70P_13"
                     /isolation_source="nasal swab"
                     /host="Ovis aries"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGXK010000001-JALGXK010000029
WGS_SCAFLD  NZ_JALGXK010000001-NZ_JALGXK010000029
//
LOCUS       NZ_JALGXD010000000   2739948 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mammaliicoccus sciuri strain GDQ20D70P_20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALGXD000000000
VERSION     NZ_JALGXD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27064492
            Assembly: GCF_022815805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mammaliicoccus sciuri
  ORGANISM  Mammaliicoccus sciuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Mammaliicoccus.
REFERENCE   1  (bases 1 to 2739948)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Genomic Analysis and Antimicrobial Resistance in Staphylococci
            Isolated from Livestock and Farm Attendants in Northern Ghana
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2739948)
  AUTHORS   Egyir,B., Dsani,E., Owusu-Nyantakyi,C., Amuasi,G.R. and Owusu,F.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2022) Bacteriology, Noguchi Memorial Institute
            fir Medical Research, S Legon drive, Accra 00233, Ghana
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALGXD000000000.1.
            The Mammaliicoccus sciuri whole genome shotgun (WGS) project has
            the project accession NZ_JALGXD000000000.  This version of the
            project (01) has the accession number NZ_JALGXD010000000, and
            consists of sequences JALGXD010000001-JALGXD010000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 79x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022815805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:17:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,720
            CDSs (total)                      :: 2,661
            Genes (coding)                    :: 2,647
            CDSs (with protein)               :: 2,647
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 2 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739948
                     /organism="Mammaliicoccus sciuri"
                     /mol_type="genomic DNA"
                     /strain="GDQ20D70P_20"
                     /isolation_source="nasal swab"
                     /host="Bos taurus"
                     /db_xref="taxon:1296"
                     /geo_loc_name="Ghana: Northern region"
                     /collection_date="2018"
WGS         JALGXD010000001-JALGXD010000027
WGS_SCAFLD  NZ_JALGXD010000001-NZ_JALGXD010000027
//
LOCUS       NZ_JAOWLQ010000000   2452534 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis strain 577, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOWLQ000000000
VERSION     NZ_JAOWLQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31221614
            Assembly: GCF_029664435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis
  ORGANISM  Lactococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2452534)
  AUTHORS   Huang,W., Dong,A., Pham,H.T., Zhou,C., Huo,Z., Watjen,A.P.,
            Prakash,S., Bang-Berthelsen,C.H. and Turner,M.S.
  TITLE     Evaluation of the fermentation potential of lactic acid bacteria
            isolated from herbs, fruits and vegetables as starter cultures in
            nut-based milk alternatives
  JOURNAL   Food Microbiol 112, 104243 (2023)
   PUBMED   36906309
REFERENCE   2  (bases 1 to 2452534)
  AUTHORS   Turner,M.S. and Huang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2022) School of Agriculture and Food Sciences,
            The University of Queensland, Keyhole road, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOWLQ000000000.1.
            The Lactococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAOWLQ000000000.  This version of the project
            (01) has the accession number NZ_JAOWLQ010000000, and consists of
            sequences JAOWLQ010000001-JAOWLQ010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. JUNE-2022
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1439x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029664435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,431
            CDSs (total)                      :: 2,368
            Genes (coding)                    :: 2,334
            CDSs (with protein)               :: 2,334
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 13 of 34
            Pseudo Genes (incomplete)         :: 16 of 34
            Pseudo Genes (internal stop)      :: 12 of 34
            Pseudo Genes (multiple problems)  :: 6 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452534
                     /organism="Lactococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="577"
                     /isolation_source="Dragon bean"
                     /db_xref="taxon:1358"
                     /geo_loc_name="Australia"
                     /collection_date="2010"
WGS         JAOWLQ010000001-JAOWLQ010000025
WGS_SCAFLD  NZ_JAOWLQ010000001-NZ_JAOWLQ010000025
//
LOCUS       NZ_JAOWLV010000000   2672402 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Lactococcus lactis strain 54, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOWLV000000000
VERSION     NZ_JAOWLV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN31221609
            Assembly: GCF_029664535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Lactococcus lactis
  ORGANISM  Lactococcus lactis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Lactococcus.
REFERENCE   1  (bases 1 to 2672402)
  AUTHORS   Huang,W., Dong,A., Pham,H.T., Zhou,C., Huo,Z., Watjen,A.P.,
            Prakash,S., Bang-Berthelsen,C.H. and Turner,M.S.
  TITLE     Evaluation of the fermentation potential of lactic acid bacteria
            isolated from herbs, fruits and vegetables as starter cultures in
            nut-based milk alternatives
  JOURNAL   Food Microbiol 112, 104243 (2023)
   PUBMED   36906309
REFERENCE   2  (bases 1 to 2672402)
  AUTHORS   Turner,M.S. and Huang,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-OCT-2022) School of Agriculture and Food Sciences,
            The University of Queensland, Keyhole road, Brisbane, QLD 4072,
            Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOWLV000000000.1.
            The Lactococcus lactis whole genome shotgun (WGS) project has the
            project accession NZ_JAOWLV000000000.  This version of the project
            (01) has the accession number NZ_JAOWLV010000000, and consists of
            sequences JAOWLV010000001-JAOWLV010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. JUNE-2022
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1239x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029664535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:55:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,677
            CDSs (total)                      :: 2,604
            Genes (coding)                    :: 2,563
            CDSs (with protein)               :: 2,563
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 4, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 4, 5 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 13 of 41
            Pseudo Genes (incomplete)         :: 26 of 41
            Pseudo Genes (internal stop)      :: 6 of 41
            Pseudo Genes (multiple problems)  :: 4 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672402
                     /organism="Lactococcus lactis"
                     /mol_type="genomic DNA"
                     /strain="54"
                     /isolation_source="Parley"
                     /db_xref="taxon:1358"
                     /geo_loc_name="Australia"
                     /collection_date="2010"
WGS         JAOWLV010000001-JAOWLV010000050
WGS_SCAFLD  NZ_JAOWLV010000001-NZ_JAOWLV010000050
//
LOCUS       NZ_JBBEXJ010000000   2900860 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Listeria innocua strain BD_SA_D10.4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBEXJ000000000
VERSION     NZ_JBBEXJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40455136
            Assembly: GCF_037543835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Listeria innocua
  ORGANISM  Listeria innocua
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2900860)
  AUTHORS   Rivu,S., Shourav,A. and Ahmed,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2024) Microbiology, University of Dhaka, Shahbag,
            Dhaka, Bangladesh
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBEXJ000000000.1.
            The Listeria innocua whole genome shotgun (WGS) project has the
            project accession NZ_JBBEXJ000000000.  This version of the project
            (01) has the accession number NZ_JBBEXJ010000000, and consists of
            sequences JBBEXJ010000001-JBBEXJ010000016.
            Bacteria and source DNA available from Listeria innocua.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 06-JAN-2024
            Assembly Method        :: SPAdes v. JANUARY-2024
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105.4x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037543835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:22:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,954
            CDSs (total)                      :: 2,886
            Genes (coding)                    :: 2,849
            CDSs (with protein)               :: 2,849
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 13 of 37
            Pseudo Genes (incomplete)         :: 23 of 37
            Pseudo Genes (internal stop)      :: 5 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900860
                     /organism="Listeria innocua"
                     /mol_type="genomic DNA"
                     /strain="BD_SA_D10.4"
                     /isolation_source="feces"
                     /host="cow"
                     /db_xref="taxon:1642"
                     /geo_loc_name="Bangladesh"
                     /collection_date="2018-06-30"
                     /collected_by="Abir Al Hasib Shourav"
WGS         JBBEXJ010000001-JBBEXJ010000016
WGS_SCAFLD  NZ_JBBEXJ010000001-NZ_JBBEXJ010000016
//
LOCUS       NZ_JBBMED010000000   2900832 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Listeria innocua strain BD SA W3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBBMED000000000
VERSION     NZ_JBBMED000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40584810
            Assembly: GCF_037804985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Listeria innocua
  ORGANISM  Listeria innocua
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2900832)
  AUTHORS   Rivu,S., Shourav,A.H. and Ahmed,S.
  TITLE     Microbial Biotechnology Laboratory
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2900832)
  AUTHORS   Rivu,S., Shourav,A.H. and Ahmed,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAR-2024) Microbiology, University of Dhaka, Shahbag,
            Dhaka, Bangladesh
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBMED000000000.1.
            The Listeria innocua whole genome shotgun (WGS) project has the
            project accession NZ_JBBMED000000000.  This version of the project
            (01) has the accession number NZ_JBBMED010000000, and consists of
            sequences JBBMED010000001-JBBMED010000017.
            Bacteria and source DNA available from Listeria innocua.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 06-JAN-2024
            Assembly Method        :: SPAdes v. JANUARY-2024
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 118.8x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037804985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:24:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,953
            CDSs (total)                      :: 2,886
            Genes (coding)                    :: 2,849
            CDSs (with protein)               :: 2,849
            Genes (RNA)                       :: 67
            rRNAs                             :: 4, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 13 of 37
            Pseudo Genes (incomplete)         :: 23 of 37
            Pseudo Genes (internal stop)      :: 5 of 37
            Pseudo Genes (multiple problems)  :: 4 of 37
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900832
                     /organism="Listeria innocua"
                     /mol_type="genomic DNA"
                     /strain="BD SA W3"
                     /isolation_source="Cattle farm water"
                     /db_xref="taxon:1642"
                     /geo_loc_name="Bangladesh"
                     /collection_date="2018-06-30"
                     /collected_by="Abir Al Hasib Shourav"
WGS         JBBMED010000001-JBBMED010000017
WGS_SCAFLD  NZ_JBBMED010000001-NZ_JBBMED010000017
//
LOCUS       NZ_CDSCHL010000000   3076476 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Microbacterium luteum isolate MarMAG_031989, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDSCHL000000000
VERSION     NZ_CDSCHL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120656719
            Assembly: GCF_977121655.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Microbacterium luteum (marine metagenome)
  ORGANISM  Microbacterium luteum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Microbacteriaceae; Microbacterium.
REFERENCE   1  (bases 1 to 3076476)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDSCHL000000000.1.
            The Microbacterium luteum whole genome shotgun (WGS) project has
            the project accession NZ_CDSCHL000000000.  This version of the
            project (01) has the accession number NZ_CDSCHL010000000, and
            consists of sequences CDSCHL010000001-CDSCHL010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977121655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:38:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,941
            CDSs (total)                      :: 2,894
            Genes (coding)                    :: 2,866
            CDSs (with protein)               :: 2,866
            Genes (RNA)                       :: 47
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 2 of 28
            Pseudo Genes (incomplete)         :: 26 of 28
            Pseudo Genes (internal stop)      :: 1 of 28
            Pseudo Genes (multiple problems)  :: 1 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076476
                     /organism="Microbacterium luteum"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_031989"
                     /db_xref="taxon:2782167"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         CDSCHL010000001-CDSCHL010000055
WGS_SCAFLD  NZ_CDSCHL010000001-NZ_CDSCHL010000055
//
LOCUS       NZ_JBJWSA010000000   2116307 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 22_O_146, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWSA000000000
VERSION     NZ_JBJWSA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237258
            Assembly: GCF_049529835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2116307)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2116307)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWSA000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWSA000000000.  This version of the
            project (01) has the accession number NZ_JBJWSA010000000, and
            consists of sequences JBJWSA010000001-JBJWSA010000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 229x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049529835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:10:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,953
            CDSs (total)                      :: 1,892
            Genes (coding)                    :: 1,775
            CDSs (with protein)               :: 1,775
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 65 of 117
            Pseudo Genes (incomplete)         :: 20 of 117
            Pseudo Genes (internal stop)      :: 50 of 117
            Pseudo Genes (multiple problems)  :: 17 of 117
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116307
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="22_O_146"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2022"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWSA010000001-JBJWSA010000013
WGS_SCAFLD  NZ_JBJWSA010000001-NZ_JBJWSA010000013
//
LOCUS       NZ_JBJWQH010000000   2044398 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 21_H_1_06, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQH000000000
VERSION     NZ_JBJWQH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237213
            Assembly: GCF_049530715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2044398)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2044398)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQH000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQH000000000.  This version of the
            project (01) has the accession number NZ_JBJWQH010000000, and
            consists of sequences JBJWQH010000001-JBJWQH010000011.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 263x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:12:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,865
            CDSs (total)                      :: 1,804
            Genes (coding)                    :: 1,681
            CDSs (with protein)               :: 1,681
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 68 of 123
            Pseudo Genes (incomplete)         :: 21 of 123
            Pseudo Genes (internal stop)      :: 54 of 123
            Pseudo Genes (multiple problems)  :: 19 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044398
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="21_H_1_06"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2021"
                     /collected_by="Michigan State University"
                     /genotype="ST3"
WGS         JBJWQH010000001-JBJWQH010000011
WGS_SCAFLD  NZ_JBJWQH010000001-NZ_JBJWQH010000011
//
LOCUS       NZ_JBJWQO010000000   2234833 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 22_A_4_06, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQO000000000
VERSION     NZ_JBJWQO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237220
            Assembly: GCF_049530615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2234833)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2234833)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQO000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQO000000000.  This version of the
            project (01) has the accession number NZ_JBJWQO010000000, and
            consists of sequences JBJWQO010000001-JBJWQO010000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 192x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530615.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:15:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,030
            CDSs (total)                      :: 1,968
            Genes (coding)                    :: 1,935
            CDSs (with protein)               :: 1,935
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 9 of 33
            Pseudo Genes (incomplete)         :: 19 of 33
            Pseudo Genes (internal stop)      :: 8 of 33
            Pseudo Genes (multiple problems)  :: 2 of 33
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234833
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="22_A_4_06"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2022"
                     /collected_by="Michigan State University"
                     /genotype="ST12"
WGS         JBJWQO010000001-JBJWQO010000034
WGS_SCAFLD  NZ_JBJWQO010000001-NZ_JBJWQO010000034
//
LOCUS       NZ_CDVUGP010000000   5311515 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Limnospira platensis isolate MarMAG_000944, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVUGP000000000
VERSION     NZ_CDVUGP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747238
            Assembly: GCF_977770285.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Limnospira platensis (seawater metagenome)
  ORGANISM  Limnospira platensis
            Bacteria; Bacillati; Cyanobacteriota; Cyanophyceae;
            Oscillatoriophycideae; Oscillatoriales; Sirenicapillariaceae;
            Limnospira.
REFERENCE   1  (bases 1 to 5311515)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVUGP000000000.1.
            The Limnospira platensis whole genome shotgun (WGS) project has the
            project accession NZ_CDVUGP000000000.  This version of the project
            (01) has the accession number NZ_CDVUGP010000000, and consists of
            sequences CDVUGP010000001-CDVUGP010000232.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977770285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:31:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,817
            CDSs (total)                      :: 4,782
            Genes (coding)                    :: 4,614
            CDSs (with protein)               :: 4,614
            Genes (RNA)                       :: 35
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 29
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 168
            CDSs (without protein)            :: 168
            Pseudo Genes (ambiguous residues) :: 0 of 168
            Pseudo Genes (frameshifted)       :: 46 of 168
            Pseudo Genes (incomplete)         :: 125 of 168
            Pseudo Genes (internal stop)      :: 33 of 168
            Pseudo Genes (multiple problems)  :: 33 of 168
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5311515
                     /organism="Limnospira platensis"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_000944"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:118562"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-05"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVUGP010000001-CDVUGP010000232
WGS_SCAFLD  NZ_CDVUGP010000001-NZ_CDVUGP010000232
//
LOCUS       NZ_JBJWQW010000000   2135732 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 22_C_T09_2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQW000000000
VERSION     NZ_JBJWQW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237228
            Assembly: GCF_049530435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2135732)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2135732)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQW000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQW000000000.  This version of the
            project (01) has the accession number NZ_JBJWQW010000000, and
            consists of sequences JBJWQW010000001-JBJWQW010000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 206x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,983
            CDSs (total)                      :: 1,922
            Genes (coding)                    :: 1,807
            CDSs (with protein)               :: 1,807
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 65 of 115
            Pseudo Genes (incomplete)         :: 19 of 115
            Pseudo Genes (internal stop)      :: 51 of 115
            Pseudo Genes (multiple problems)  :: 19 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135732
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="22_C_T09_2"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2022"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWQW010000001-JBJWQW010000016
WGS_SCAFLD  NZ_JBJWQW010000001-NZ_JBJWQW010000016
//
LOCUS       NZ_JBJWPV010000000   2098376 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 21_B_5_01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWPV000000000
VERSION     NZ_JBJWPV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237201
            Assembly: GCF_049530995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2098376)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2098376)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWPV000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWPV000000000.  This version of the
            project (01) has the accession number NZ_JBJWPV010000000, and
            consists of sequences JBJWPV010000001-JBJWPV010000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 189x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:21:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,926
            CDSs (total)                      :: 1,865
            Genes (coding)                    :: 1,752
            CDSs (with protein)               :: 1,752
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 64 of 113
            Pseudo Genes (incomplete)         :: 17 of 113
            Pseudo Genes (internal stop)      :: 50 of 113
            Pseudo Genes (multiple problems)  :: 17 of 113
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098376
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="21_B_5_01"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2021"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWPV010000001-JBJWPV010000013
WGS_SCAFLD  NZ_JBJWPV010000001-NZ_JBJWPV010000013
//
LOCUS       NZ_JBJWQJ010000000   2134306 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 21_J_4_05, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQJ000000000
VERSION     NZ_JBJWQJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237215
            Assembly: GCF_049530755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2134306)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2134306)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQJ000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQJ000000000.  This version of the
            project (01) has the accession number NZ_JBJWQJ010000000, and
            consists of sequences JBJWQJ010000001-JBJWQJ010000016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 205x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:14:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,977
            CDSs (total)                      :: 1,916
            Genes (coding)                    :: 1,801
            CDSs (with protein)               :: 1,801
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 65 of 115
            Pseudo Genes (incomplete)         :: 19 of 115
            Pseudo Genes (internal stop)      :: 50 of 115
            Pseudo Genes (multiple problems)  :: 18 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134306
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="21_J_4_05"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2021"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWQJ010000001-JBJWQJ010000016
WGS_SCAFLD  NZ_JBJWQJ010000001-NZ_JBJWQJ010000016
//
LOCUS       NZ_JBJWPU010000000   2097217 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 21_B_3_03, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWPU000000000
VERSION     NZ_JBJWPU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237200
            Assembly: GCF_049531015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2097217)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2097217)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWPU000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWPU000000000.  This version of the
            project (01) has the accession number NZ_JBJWPU010000000, and
            consists of sequences JBJWPU010000001-JBJWPU010000013.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 252x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049531015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:15:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,922
            CDSs (total)                      :: 1,861
            Genes (coding)                    :: 1,746
            CDSs (with protein)               :: 1,746
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 64 of 115
            Pseudo Genes (incomplete)         :: 20 of 115
            Pseudo Genes (internal stop)      :: 50 of 115
            Pseudo Genes (multiple problems)  :: 18 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097217
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="21_B_3_03"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2021"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWPU010000001-JBJWPU010000013
WGS_SCAFLD  NZ_JBJWPU010000001-NZ_JBJWPU010000013
//
LOCUS       NZ_JBJWQU010000000   2135897 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 22_C_S17_2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQU000000000
VERSION     NZ_JBJWQU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237226
            Assembly: GCF_049530495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2135897)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2135897)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQU000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQU000000000.  This version of the
            project (01) has the accession number NZ_JBJWQU010000000, and
            consists of sequences JBJWQU010000001-JBJWQU010000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 261x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:18:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,980
            CDSs (total)                      :: 1,919
            Genes (coding)                    :: 1,801
            CDSs (with protein)               :: 1,801
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 66 of 118
            Pseudo Genes (incomplete)         :: 21 of 118
            Pseudo Genes (internal stop)      :: 50 of 118
            Pseudo Genes (multiple problems)  :: 18 of 118
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135897
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="22_C_S17_2"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2022"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWQU010000001-JBJWQU010000017
WGS_SCAFLD  NZ_JBJWQU010000001-NZ_JBJWQU010000017
//
LOCUS       NZ_CDVTXH010000000   5291102 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Limnospira platensis isolate MarMAG_000945, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVTXH000000000
VERSION     NZ_CDVTXH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747223
            Assembly: GCF_977767885.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Limnospira platensis (seawater metagenome)
  ORGANISM  Limnospira platensis
            Bacteria; Bacillati; Cyanobacteriota; Cyanophyceae;
            Oscillatoriophycideae; Oscillatoriales; Sirenicapillariaceae;
            Limnospira.
REFERENCE   1  (bases 1 to 5291102)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVTXH000000000.1.
            The Limnospira platensis whole genome shotgun (WGS) project has the
            project accession NZ_CDVTXH000000000.  This version of the project
            (01) has the accession number NZ_CDVTXH010000000, and consists of
            sequences CDVTXH010000001-CDVTXH010000223.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977767885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:30:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,774
            CDSs (total)                      :: 4,739
            Genes (coding)                    :: 4,589
            CDSs (with protein)               :: 4,589
            Genes (RNA)                       :: 35
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 29
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 38 of 150
            Pseudo Genes (incomplete)         :: 116 of 150
            Pseudo Genes (internal stop)      :: 23 of 150
            Pseudo Genes (multiple problems)  :: 25 of 150
            CRISPR Arrays                     :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5291102
                     /organism="Limnospira platensis"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_000945"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:118562"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-05"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVTXH010000001-CDVTXH010000223
WGS_SCAFLD  NZ_CDVTXH010000001-NZ_CDVTXH010000223
//
LOCUS       NZ_JBJWRR010000000   2097330 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 22_K_0_N40_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWRR000000000
VERSION     NZ_JBJWRR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237249
            Assembly: GCF_049530035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2097330)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2097330)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWRR000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWRR000000000.  This version of the
            project (01) has the accession number NZ_JBJWRR010000000, and
            consists of sequences JBJWRR010000001-JBJWRR010000019.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 212x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:21:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,921
            CDSs (total)                      :: 1,860
            Genes (coding)                    :: 1,744
            CDSs (with protein)               :: 1,744
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 63 of 116
            Pseudo Genes (incomplete)         :: 20 of 116
            Pseudo Genes (internal stop)      :: 52 of 116
            Pseudo Genes (multiple problems)  :: 18 of 116
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097330
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="22_K_0_N40_1"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Georgia"
                     /collection_date="2022"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWRR010000001-JBJWRR010000019
WGS_SCAFLD  NZ_JBJWRR010000001-NZ_JBJWRR010000019
//
LOCUS       NZ_JBJWQX010000000   2131766 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 22_C_T16_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQX000000000
VERSION     NZ_JBJWQX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237229
            Assembly: GCF_049530455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2131766)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2131766)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQX000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQX000000000.  This version of the
            project (01) has the accession number NZ_JBJWQX010000000, and
            consists of sequences JBJWQX010000001-JBJWQX010000020.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 207x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:19:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,975
            CDSs (total)                      :: 1,914
            Genes (coding)                    :: 1,798
            CDSs (with protein)               :: 1,798
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 64 of 116
            Pseudo Genes (incomplete)         :: 21 of 116
            Pseudo Genes (internal stop)      :: 50 of 116
            Pseudo Genes (multiple problems)  :: 18 of 116
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131766
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="22_C_T16_1"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Georgia"
                     /collection_date="2022"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWQX010000001-JBJWQX010000020
WGS_SCAFLD  NZ_JBJWQX010000001-NZ_JBJWQX010000020
//
LOCUS       NZ_JBJWQV010000000   2136802 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 22_C_T09_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQV000000000
VERSION     NZ_JBJWQV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237227
            Assembly: GCF_049530475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2136802)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2136802)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQV000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQV000000000.  This version of the
            project (01) has the accession number NZ_JBJWQV010000000, and
            consists of sequences JBJWQV010000001-JBJWQV010000017.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 172x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:19:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,976
            CDSs (total)                      :: 1,915
            Genes (coding)                    :: 1,800
            CDSs (with protein)               :: 1,800
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 64 of 115
            Pseudo Genes (incomplete)         :: 19 of 115
            Pseudo Genes (internal stop)      :: 50 of 115
            Pseudo Genes (multiple problems)  :: 17 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136802
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="22_C_T09_1"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Georgia"
                     /collection_date="2022"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWQV010000001-JBJWQV010000017
WGS_SCAFLD  NZ_JBJWQV010000001-NZ_JBJWQV010000017
//
LOCUS       NZ_JBJWQI010000000   2062144 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 21_H_2_19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWQI000000000
VERSION     NZ_JBJWQI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237214
            Assembly: GCF_049530735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2062144)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2062144)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWQI000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWQI000000000.  This version of the
            project (01) has the accession number NZ_JBJWQI010000000, and
            consists of sequences JBJWQI010000001-JBJWQI010000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 236x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530735.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:21:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,890
            CDSs (total)                      :: 1,829
            Genes (coding)                    :: 1,706
            CDSs (with protein)               :: 1,706
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 68 of 123
            Pseudo Genes (incomplete)         :: 21 of 123
            Pseudo Genes (internal stop)      :: 54 of 123
            Pseudo Genes (multiple problems)  :: 19 of 123
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062144
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="21_H_2_19"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2021"
                     /collected_by="Michigan State University"
                     /genotype="ST3"
WGS         JBJWQI010000001-JBJWQI010000012
WGS_SCAFLD  NZ_JBJWQI010000001-NZ_JBJWQI010000012
//
LOCUS       NZ_JBJWPX010000000   2116480 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Melissococcus plutonius strain 21_C_3_01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBJWPX000000000
VERSION     NZ_JBJWPX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45237203
            Assembly: GCF_049530955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Melissococcus plutonius
  ORGANISM  Melissococcus plutonius
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Melissococcus.
REFERENCE   1  (bases 1 to 2116480)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Surveillance and molecular epidemiology reveal Melissococcus
            plutonius is endemic among Michigan, US beekeeping operations
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2116480)
  AUTHORS   Fowler,P.D., Dhakal,U., Chang,J.H. and Milbrath,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2024) Comparative Medicine and Integrative
            Biology, Michigan State University, 784 Wilson Rd Room G-100, East
            Lansing, MI 48824, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJWPX000000000.1.
            The Melissococcus plutonius whole genome shotgun (WGS) project has
            the project accession NZ_JBJWPX000000000.  This version of the
            project (01) has the accession number NZ_JBJWPX010000000, and
            consists of sequences JBJWPX010000001-JBJWPX010000015.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 201x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049530955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:16:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,956
            CDSs (total)                      :: 1,895
            Genes (coding)                    :: 1,778
            CDSs (with protein)               :: 1,778
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 65 of 117
            Pseudo Genes (incomplete)         :: 21 of 117
            Pseudo Genes (internal stop)      :: 51 of 117
            Pseudo Genes (multiple problems)  :: 19 of 117
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116480
                     /organism="Melissococcus plutonius"
                     /mol_type="genomic DNA"
                     /strain="21_C_3_01"
                     /isolation_source="larvae"
                     /host="Apis mellifera"
                     /db_xref="taxon:33970"
                     /geo_loc_name="USA: Michigan"
                     /collection_date="2021"
                     /collected_by="Michigan State University"
                     /genotype="ST39"
WGS         JBJWPX010000001-JBJWPX010000015
WGS_SCAFLD  NZ_JBJWPX010000001-NZ_JBJWPX010000015
//
LOCUS       NZ_JBBWVI010000000   1984669 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leuconostoc mesenteroides strain IBUN 91.2.98, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBWVI000000000
VERSION     NZ_JBBWVI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40620118
            Assembly: GCF_038320945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leuconostoc mesenteroides
  ORGANISM  Leuconostoc mesenteroides
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Leuconostoc.
REFERENCE   1  (bases 1 to 1984669)
  AUTHORS   Garcia-Galindo,L.A., Nunez,C.A., Ceron,J.A. and Ospina,S.A.
  TITLE     Leuconostoc mesenteroides IBUN 91.2.98
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1984669)
  AUTHORS   Garcia-Galindo,L.A., Nunez,C.A., Ceron,J.A. and Ospina,S.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAR-2024) IBUN, UNIVERSIDAD NACIONAL DE COLOMBIA,
            Carrera 45 N 26 85 Instituto de Biotecnologia IBUN, Bogota,
            Cundinamarca 111321, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBWVI000000000.1.
            The Leuconostoc mesenteroides whole genome shotgun (WGS) project
            has the project accession NZ_JBBWVI000000000.  This version of the
            project (01) has the accession number NZ_JBBWVI010000000, and
            consists of sequences JBBWVI010000001-JBBWVI010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from INSTITUTO DE BIOTECNOLOGIA
            DE LA UNIVERSIDAD NACIONAL DE COLOMBIA (IBUN).
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 17-OCT-2024
            Assembly Method        :: SPAdes v. 3.15.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.6x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038320945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:44:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,011
            CDSs (total)                      :: 1,951
            Genes (coding)                    :: 1,926
            CDSs (with protein)               :: 1,926
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 12 of 25
            Pseudo Genes (incomplete)         :: 11 of 25
            Pseudo Genes (internal stop)      :: 6 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984669
                     /organism="Leuconostoc mesenteroides"
                     /mol_type="genomic DNA"
                     /strain="IBUN 91.2.98"
                     /isolation_source="Sugar cane soil"
                     /db_xref="taxon:1245"
                     /geo_loc_name="Colombia"
                     /lat_lon="5.87444444 N 73.57166666 W"
                     /collection_date="1998-10-01"
WGS         JBBWVI010000001-JBBWVI010000025
WGS_SCAFLD  NZ_JBBWVI010000001-NZ_JBBWVI010000025
//
LOCUS       NZ_JBMMUN010000000   2038420 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Leuconostoc mesenteroides strain 62-9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMMUN000000000
VERSION     NZ_JBMMUN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47572637
            Assembly: GCF_049629845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Leuconostoc mesenteroides
  ORGANISM  Leuconostoc mesenteroides
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Leuconostoc.
REFERENCE   1  (bases 1 to 2038420)
  AUTHORS   Joshi,S. and Bruni,G.
  TITLE     Whole genome sequencing of Leuconostoc suionicum, L. mesenteroides,
            and L. citreum isolates from sugar beet factory juice and biofilm
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2038420)
  AUTHORS   Joshi,S. and Bruni,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-APR-2025) Commodity Utilization Research Unit,
            USDA-ARS, 1100 ALLEN TOUSSAINT BLVD, New Orleans, LA 70124, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMMUN000000000.1.
            The Leuconostoc mesenteroides whole genome shotgun (WGS) project
            has the project accession NZ_JBMMUN000000000.  This version of the
            project (01) has the accession number NZ_JBMMUN010000000, and
            consists of sequences JBMMUN010000001-JBMMUN010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 0.5.1+galaxy0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 820x
            Sequencing Technology  :: AVITI
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049629845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:21:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,052
            CDSs (total)                      :: 1,999
            Genes (coding)                    :: 1,967
            CDSs (with protein)               :: 1,967
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 7 of 32
            Pseudo Genes (incomplete)         :: 24 of 32
            Pseudo Genes (internal stop)      :: 5 of 32
            Pseudo Genes (multiple problems)  :: 3 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038420
                     /organism="Leuconostoc mesenteroides"
                     /mol_type="genomic DNA"
                     /strain="62-9"
                     /isolation_source="sugarbeet factory juice"
                     /db_xref="taxon:1245"
                     /geo_loc_name="USA"
                     /collection_date="2023-04-03"
WGS         JBMMUN010000001-JBMMUN010000030
WGS_SCAFLD  NZ_JBMMUN010000001-NZ_JBMMUN010000030
//
LOCUS       NZ_JBSWCE010000000   7373117 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Micromonospora sp. R311, whole genome shotgun sequencing project.
ACCESSION   NZ_JBSWCE000000000
VERSION     NZ_JBSWCE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN52847953
            Assembly: GCF_056780015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Micromonospora sp. R311
  ORGANISM  Micromonospora sp. R311
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Micromonosporales; Micromonosporaceae; Micromonospora.
REFERENCE   1  (bases 1 to 7373117)
  AUTHORS   Zhong,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-OCT-2025) School of Life Sciences and Engineering,
            Northwest Minzu University, 99 Haoxieying Village, Xiaoguanying,
            Lanzhou, Gansu 730000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBSWCE000000000.1.
            The Micromonospora sp. R311 whole genome shotgun (WGS) project has
            the project accession NZ_JBSWCE000000000.  This version of the
            project (01) has the accession number NZ_JBSWCE010000000, and
            consists of sequences JBSWCE010000001-JBSWCE010000126.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 110.48x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:29:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,898
            CDSs (total)                      :: 6,819
            Genes (coding)                    :: 6,653
            CDSs (with protein)               :: 6,653
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 70
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 56 of 166
            Pseudo Genes (incomplete)         :: 136 of 166
            Pseudo Genes (internal stop)      :: 7 of 166
            Pseudo Genes (multiple problems)  :: 30 of 166
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7373117
                     /organism="Micromonospora sp. R311"
                     /mol_type="genomic DNA"
                     /strain="R311"
                     /host="rhizosphere soil"
                     /db_xref="taxon:3470135"
                     /geo_loc_name="China: Lanzhou"
WGS         JBSWCE010000001-JBSWCE010000126
WGS_SCAFLD  NZ_JBSWCE010000001-NZ_JBSWCE010000126
//
LOCUS       NZ_JBREBP010000000   6372381 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Methylobacterium brachiatum strain SB1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBREBP000000000
VERSION     NZ_JBREBP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50480395
            Assembly: GCF_056780285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Methylobacterium brachiatum
  ORGANISM  Methylobacterium brachiatum
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
REFERENCE   1  (bases 1 to 6372381)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Tso,F., Ford,N.E.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6372381)
  AUTHORS   Garrell,A.-K., Swift,J.F., Pal,G., Pestalozzi,C., Castrillo,G.,
            Schlaeppi,K., Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBREBP000000000.1.
            The Methylobacterium brachiatum whole genome shotgun (WGS) project
            has the project accession NZ_JBREBP000000000.  This version of the
            project (01) has the accession number NZ_JBREBP010000000, and
            consists of sequence JBREBP010000001.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 59x
            Sequencing Technology  :: Oxford Nanopore Technology
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:17:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,231
            CDSs (total)                      :: 6,157
            Genes (coding)                    :: 6,084
            CDSs (with protein)               :: 6,084
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 28 of 73
            Pseudo Genes (incomplete)         :: 54 of 73
            Pseudo Genes (internal stop)      :: 17 of 73
            Pseudo Genes (multiple problems)  :: 20 of 73
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6372381
                     /organism="Methylobacterium brachiatum"
                     /mol_type="genomic DNA"
                     /strain="SB1"
                     /db_xref="taxon:269660"
                     /geo_loc_name="United Kingdom"
                     /lat_lon="52.820 N 1.251 E"
WGS         JBREBP010000001
WGS_SCAFLD  NZ_CM165556
//
LOCUS       NZ_AERI01000000      1904293 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Moraxella catarrhalis BC7, whole genome shotgun sequencing project.
ACCESSION   NZ_AERI00000000
VERSION     NZ_AERI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02393790
            Assembly: GCF_000193005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Moraxella catarrhalis BC7
  ORGANISM  Moraxella catarrhalis BC7
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Moraxella.
REFERENCE   1  (bases 1 to 1904293)
  AUTHORS   Davie,J.J., Earl,J., de Vries,S.P., Ahmed,A., Hu,F.Z.,
            Bootsma,H.J., Stol,K., Hermans,P.W., Wadowsky,R.M., Ehrlich,G.D.,
            Hays,J.P. and Campagnari,A.A.
  TITLE     Comparative analysis and supragenome modeling of twelve Moraxella
            catarrhalis clinical isolates
  JOURNAL   BMC Genomics 12, 70 (2011)
   PUBMED   21269504
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904293)
  AUTHORS   Ehrlich,G.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2011) Center for Genomic Sciences,
            Allegheny-Singer Research Institute, 320 E. North Ave. 11th Floor,
            Pittsburgh, PA 15212-4772, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AERI00000000.1.
            The Moraxella catarrhalis BC7 whole genome shotgun (WGS) project
            has the project accession NZ_AERI00000000.  This version of the
            project (01) has the accession number NZ_AERI01000000, and consists
            of sequences AERI01000001-AERI01000037.
            Source DNA and Bacteria available from Garth D. Ehrlich 320 E.
            North Ave. 11th Floor, Pittsburgh PA 15212
            
            Genome was manually curated based on annotation generated by the
            NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group.
            Information about the Pipeline can be found here:
            http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.0.01.14
            Genome Coverage       :: 28.6x
            Sequencing Technology :: 454 Ti08/12/09AA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000193005.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:21:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,753
            Genes (coding)                    :: 1,688
            CDSs (with protein)               :: 1,688
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 41 of 65
            Pseudo Genes (incomplete)         :: 23 of 65
            Pseudo Genes (internal stop)      :: 11 of 65
            Pseudo Genes (multiple problems)  :: 9 of 65
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904293
                     /organism="Moraxella catarrhalis BC7"
                     /mol_type="genomic DNA"
                     /strain="BC7"
                     /db_xref="taxon:857575"
WGS         AERI01000001-AERI01000037
WGS_SCAFLD  NZ_AERI01000001-NZ_AERI01000037
//
LOCUS       NZ_CMXL01000000      2054678 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1757, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CMXL00000000
VERSION     NZ_CMXL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031738
            Assembly: GCF_001116265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CMXL00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CMXL00000000.  This version of the project
            (01) has the accession number NZ_CMXL01000000, and consists of
            sequences CMXL01000001-CMXL01000197.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001116265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:27:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,129
            CDSs (total)                      :: 2,072
            Genes (coding)                    :: 1,910
            CDSs (with protein)               :: 1,910
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 69 of 162
            Pseudo Genes (incomplete)         :: 98 of 162
            Pseudo Genes (internal stop)      :: 21 of 162
            Pseudo Genes (multiple problems)  :: 23 of 162
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054678
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1757"
                     /serovar="Serogroup A"
                     /isolation_source="pharynx"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2003"
WGS         CMXL01000001-CMXL01000197
WGS_SCAFLD  NZ_CMXL01000001-NZ_CMXL01000197
//
LOCUS       NZ_MJIX01000000       834636 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmoides pneumoniae strain G6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MJIX00000000
VERSION     NZ_MJIX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05391703
            Assembly: GCF_002563515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmoides pneumoniae (Mycoplasma pneumoniae)
  ORGANISM  Mycoplasmoides pneumoniae
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Mycoplasmoidaceae; Mycoplasmoides.
REFERENCE   1  (bases 1 to 834636)
  AUTHORS   Diaz,M.H., Desai,H.P., Morrison,S.S., Benitez,A.J., Wolff,B.J.,
            Caravas,J., Read,T.D., Dean,D. and Winchell,J.M.
  TITLE     Correction: Comprehensive bioinformatics analysis of Mycoplasma
            pneumoniae genomes to investigate underlying population structure
            and type-specific determinants
  JOURNAL   PLoS One 12 (10), e0186030 (2017)
   PUBMED   28977025
  REMARK    Correction to:[PLoS One. 2017 Apr 14;12(4):e0174701. doi:
            10.1371/journal.pone.0174701. PMID: 28410368]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 834636)
  AUTHORS   Desai,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2016) Pneumonia Response and Surveillance
            Laboratory, The Center for Disease Control and Prevention, 1600
            Clifton Road, Atlanta, GA 30333, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MJIX00000000.1.
            The Mycoplasmoides pneumoniae whole genome shotgun (WGS) project
            has the project accession NZ_MJIX00000000.  This version of the
            project (01) has the accession number NZ_MJIX01000000, and consists
            of sequences MJIX01000001-MJIX01000004.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Isolate.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-DEC-2015
            Assembly Method        :: HGAP v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 117.23x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002563515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 792
            CDSs (total)                      :: 749
            Genes (coding)                    :: 692
            CDSs (with protein)               :: 692
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 28 of 57
            Pseudo Genes (incomplete)         :: 33 of 57
            Pseudo Genes (internal stop)      :: 14 of 57
            Pseudo Genes (multiple problems)  :: 17 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..834636
                     /organism="Mycoplasmoides pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="G6"
                     /isolation_source="clinical"
                     /db_xref="taxon:2104"
                     /geo_loc_name="Guatemala"
                     /collection_date="2010"
WGS         MJIX01000001-MJIX01000004
WGS_SCAFLD  NZ_MJIX01000001-NZ_MJIX01000004
//
LOCUS       NZ_MLKZ01000000      1965363 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni strain AWRIB124, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MLKZ00000000
VERSION     NZ_MLKZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04297013
            Assembly: GCF_001867525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni
  ORGANISM  Oenococcus oeni
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 1965363)
  AUTHORS   Sternes,P.R. and Borneman,A.R.
  TITLE     Consensus pan-genome assembly of the specialised wine bacterium
            Oenococcus oeni
  JOURNAL   BMC Genomics 17, 308 (2016)
   PUBMED   27118061
  REMARK    Erratum:[BMC Genomics. 2016 Oct 20;17(1):813. doi:
            10.1186/s12864-016-2811-2. PMID: 27765012]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965363)
  AUTHORS   Borneman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2016) Research, The Australia Wine Research
            Institute, Corner of Hartley Grove and Paratoo Road, Adelaide, SA
            5064, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MLKZ00000000.1.
            The Oenococcus oeni whole genome shotgun (WGS) project has the
            project accession NZ_MLKZ00000000.  This version of the project
            (01) has the accession number NZ_MLKZ01000000, and consists of
            sequences MLKZ01000001-MLKZ01000694.
            Source DNA available from The Australian Wine Research Institute's
            culture collection.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: MIRA v. 4.0rc5
            Genome Coverage       :: 21.36x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001867525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:31:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,445
            CDSs (total)                      :: 2,384
            Genes (coding)                    :: 2,089
            CDSs (with protein)               :: 2,089
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 8 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 295
            CDSs (without protein)            :: 295
            Pseudo Genes (ambiguous residues) :: 0 of 295
            Pseudo Genes (frameshifted)       :: 43 of 295
            Pseudo Genes (incomplete)         :: 235 of 295
            Pseudo Genes (internal stop)      :: 23 of 295
            Pseudo Genes (multiple problems)  :: 6 of 295
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965363
                     /organism="Oenococcus oeni"
                     /mol_type="genomic DNA"
                     /strain="AWRIB124"
                     /isolation_source="Wine"
                     /db_xref="taxon:1247"
                     /geo_loc_name="Australia"
                     /collection_date="1988"
WGS         MLKZ01000001-MLKZ01000694
WGS_SCAFLD  NZ_MLKZ01000001-NZ_MLKZ01000694
//
LOCUS       NZ_CMYH01000000      2065033 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1891, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CMYH00000000
VERSION     NZ_CMYH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031645
            Assembly: GCF_001136445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CMYH00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CMYH00000000.  This version of the project
            (01) has the accession number NZ_CMYH01000000, and consists of
            sequences CMYH01000001-CMYH01000141.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001136445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:31:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,130
            CDSs (total)                      :: 2,073
            Genes (coding)                    :: 1,918
            CDSs (with protein)               :: 1,918
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 53 of 155
            Pseudo Genes (incomplete)         :: 103 of 155
            Pseudo Genes (internal stop)      :: 22 of 155
            Pseudo Genes (multiple problems)  :: 20 of 155
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065033
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1891"
                     /serovar="Serogroup A"
                     /isolation_source="pharynx"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2004"
WGS         CMYH01000001-CMYH01000141
WGS_SCAFLD  NZ_CMYH01000001-NZ_CMYH01000141
//
LOCUS       NZ_CNAB01000000      2072219 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM2524, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CNAB00000000
VERSION     NZ_CNAB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031714
            Assembly: GCF_001151925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CNAB00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CNAB00000000.  This version of the project
            (01) has the accession number NZ_CNAB01000000, and consists of
            sequences CNAB01000001-CNAB01000183.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001151925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:29:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,150
            CDSs (total)                      :: 2,094
            Genes (coding)                    :: 1,944
            CDSs (with protein)               :: 1,944
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 64 of 150
            Pseudo Genes (incomplete)         :: 97 of 150
            Pseudo Genes (internal stop)      :: 20 of 150
            Pseudo Genes (multiple problems)  :: 29 of 150
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072219
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM2524"
                     /serovar="Serogroup A"
                     /isolation_source="pharynx"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2007"
WGS         CNAB01000001-CNAB01000183
WGS_SCAFLD  NZ_CNAB01000001-NZ_CNAB01000183
//
LOCUS       NZ_CMYI01000000      2069857 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1826, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CMYI00000000
VERSION     NZ_CMYI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031674
            Assembly: GCF_001098105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CMYI00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CMYI00000000.  This version of the project
            (01) has the accession number NZ_CMYI01000000, and consists of
            sequences CMYI01000001-CMYI01000175.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001098105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:31:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,128
            CDSs (total)                      :: 2,068
            Genes (coding)                    :: 1,917
            CDSs (with protein)               :: 1,917
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 57 of 151
            Pseudo Genes (incomplete)         :: 98 of 151
            Pseudo Genes (internal stop)      :: 17 of 151
            Pseudo Genes (multiple problems)  :: 19 of 151
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069857
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1826"
                     /serovar="Serogroup A"
                     /isolation_source="CSF"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2004"
WGS         CMYI01000001-CMYI01000175
WGS_SCAFLD  NZ_CMYI01000001-NZ_CMYI01000175
//
LOCUS       NZ_CHII01000000      2061823 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1805, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CHII00000000
VERSION     NZ_CHII00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031677
            Assembly: GCF_001349175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CHII00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CHII00000000.  This version of the project
            (01) has the accession number NZ_CHII01000000, and consists of
            sequences CHII01000001-CHII01000156.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001349175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:28:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,135
            CDSs (total)                      :: 2,076
            Genes (coding)                    :: 1,920
            CDSs (with protein)               :: 1,920
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 68 of 156
            Pseudo Genes (incomplete)         :: 95 of 156
            Pseudo Genes (internal stop)      :: 17 of 156
            Pseudo Genes (multiple problems)  :: 22 of 156
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061823
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1805"
                     /serovar="Serogroup A"
                     /isolation_source="CSF"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2004"
WGS         CHII01000001-CHII01000156
WGS_SCAFLD  NZ_CHII01000001-NZ_CHII01000156
//
LOCUS       NZ_CMXJ01000000      2058323 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1561, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CMXJ00000000
VERSION     NZ_CMXJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031662
            Assembly: GCF_001113425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CMXJ00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CMXJ00000000.  This version of the project
            (01) has the accession number NZ_CMXJ01000000, and consists of
            sequences CMXJ01000001-CMXJ01000148.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001113425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,128
            CDSs (total)                      :: 2,072
            Genes (coding)                    :: 1,916
            CDSs (with protein)               :: 1,916
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 63 of 156
            Pseudo Genes (incomplete)         :: 101 of 156
            Pseudo Genes (internal stop)      :: 15 of 156
            Pseudo Genes (multiple problems)  :: 21 of 156
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058323
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1561"
                     /serovar="Serogroup A"
                     /isolation_source="CSF"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2003"
WGS         CMXJ01000001-CMXJ01000148
WGS_SCAFLD  NZ_CMXJ01000001-NZ_CMXJ01000148
//
LOCUS       NZ_CMYL01000000      2067268 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1845, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CMYL00000000
VERSION     NZ_CMYL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031653
            Assembly: GCF_001083305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CMYL00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CMYL00000000.  This version of the project
            (01) has the accession number NZ_CMYL01000000, and consists of
            sequences CMYL01000001-CMYL01000145.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001083305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,125
            CDSs (total)                      :: 2,065
            Genes (coding)                    :: 1,912
            CDSs (with protein)               :: 1,912
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 66 of 153
            Pseudo Genes (incomplete)         :: 102 of 153
            Pseudo Genes (internal stop)      :: 14 of 153
            Pseudo Genes (multiple problems)  :: 27 of 153
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067268
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1845"
                     /serovar="Serogroup A"
                     /isolation_source="CSF"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2004"
WGS         CMYL01000001-CMYL01000145
WGS_SCAFLD  NZ_CMYL01000001-NZ_CMYL01000145
//
LOCUS       NZ_CMWY01000000      2063138 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1573, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CMWY00000000
VERSION     NZ_CMWY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031681
            Assembly: GCF_001083765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CMWY00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CMWY00000000.  This version of the project
            (01) has the accession number NZ_CMWY01000000, and consists of
            sequences CMWY01000001-CMWY01000149.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001083765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:31:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,128
            CDSs (total)                      :: 2,068
            Genes (coding)                    :: 1,916
            CDSs (with protein)               :: 1,916
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 64 of 152
            Pseudo Genes (incomplete)         :: 95 of 152
            Pseudo Genes (internal stop)      :: 19 of 152
            Pseudo Genes (multiple problems)  :: 25 of 152
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063138
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1573"
                     /serovar="Serogroup A"
                     /isolation_source="CSF"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2003"
WGS         CMWY01000001-CMWY01000149
WGS_SCAFLD  NZ_CMWY01000001-NZ_CMWY01000149
//
LOCUS       NZ_MLOG01000000      2057836 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni strain AWRIB621, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MLOG00000000
VERSION     NZ_MLOG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04297098
            Assembly: GCF_001869015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni
  ORGANISM  Oenococcus oeni
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 2057836)
  AUTHORS   Sternes,P.R. and Borneman,A.R.
  TITLE     Consensus pan-genome assembly of the specialised wine bacterium
            Oenococcus oeni
  JOURNAL   BMC Genomics 17, 308 (2016)
   PUBMED   27118061
  REMARK    Erratum:[BMC Genomics. 2016 Oct 20;17(1):813. doi:
            10.1186/s12864-016-2811-2. PMID: 27765012]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057836)
  AUTHORS   Borneman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2016) Research, The Australia Wine Research
            Institute, Corner of Hartley Grove and Paratoo Road, Adelaide, SA
            5064, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MLOG00000000.1.
            The Oenococcus oeni whole genome shotgun (WGS) project has the
            project accession NZ_MLOG00000000.  This version of the project
            (01) has the accession number NZ_MLOG01000000, and consists of
            sequences MLOG01000001-MLOG01000725.
            Source DNA available from The Australian Wine Research Institute's
            culture collection.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: MIRA v. 4.0rc5
            Genome Coverage       :: 25.71x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001869015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,579
            CDSs (total)                      :: 2,515
            Genes (coding)                    :: 2,197
            CDSs (with protein)               :: 2,197
            Genes (RNA)                       :: 64
            rRNAs                             :: 4, 3, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 2, 6 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 318
            CDSs (without protein)            :: 318
            Pseudo Genes (ambiguous residues) :: 0 of 318
            Pseudo Genes (frameshifted)       :: 36 of 318
            Pseudo Genes (incomplete)         :: 265 of 318
            Pseudo Genes (internal stop)      :: 22 of 318
            Pseudo Genes (multiple problems)  :: 5 of 318
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057836
                     /organism="Oenococcus oeni"
                     /mol_type="genomic DNA"
                     /strain="AWRIB621"
                     /isolation_source="Sparkling wine"
                     /db_xref="taxon:1247"
                     /geo_loc_name="Australia"
                     /collection_date="2009"
WGS         MLOG01000001-MLOG01000725
WGS_SCAFLD  NZ_MLOG01000001-NZ_MLOG01000725
//
LOCUS       NZ_MLNJ01000000      2017463 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni strain AWRIB442, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MLNJ00000000
VERSION     NZ_MLNJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04297075
            Assembly: GCF_001869365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni
  ORGANISM  Oenococcus oeni
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 2017463)
  AUTHORS   Sternes,P.R. and Borneman,A.R.
  TITLE     Consensus pan-genome assembly of the specialised wine bacterium
            Oenococcus oeni
  JOURNAL   BMC Genomics 17, 308 (2016)
   PUBMED   27118061
  REMARK    Erratum:[BMC Genomics. 2016 Oct 20;17(1):813. doi:
            10.1186/s12864-016-2811-2. PMID: 27765012]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017463)
  AUTHORS   Borneman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2016) Research, The Australia Wine Research
            Institute, Corner of Hartley Grove and Paratoo Road, Adelaide, SA
            5064, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MLNJ00000000.1.
            The Oenococcus oeni whole genome shotgun (WGS) project has the
            project accession NZ_MLNJ00000000.  This version of the project
            (01) has the accession number NZ_MLNJ01000000, and consists of
            sequences MLNJ01000001-MLNJ01000491.
            Source DNA available from The Australian Wine Research Institute's
            culture collection.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: MIRA v. 4.0rc5
            Genome Coverage       :: 64.72x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001869365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:33:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,368
            CDSs (total)                      :: 2,308
            Genes (coding)                    :: 2,049
            CDSs (with protein)               :: 2,049
            Genes (RNA)                       :: 60
            rRNAs                             :: 3, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 259
            CDSs (without protein)            :: 259
            Pseudo Genes (ambiguous residues) :: 0 of 259
            Pseudo Genes (frameshifted)       :: 51 of 259
            Pseudo Genes (incomplete)         :: 189 of 259
            Pseudo Genes (internal stop)      :: 28 of 259
            Pseudo Genes (multiple problems)  :: 9 of 259
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017463
                     /organism="Oenococcus oeni"
                     /mol_type="genomic DNA"
                     /strain="AWRIB442"
                     /isolation_source="Merlot"
                     /db_xref="taxon:1247"
                     /collection_date="2002"
WGS         MLNJ01000001-MLNJ01000491
WGS_SCAFLD  NZ_MLNJ01000001-NZ_MLNJ01000491
//
LOCUS       NZ_CHIJ01000000      2082976 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM2718, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CHIJ00000000
VERSION     NZ_CHIJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031697
            Assembly: GCF_001349235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CHIJ00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CHIJ00000000.  This version of the project
            (01) has the accession number NZ_CHIJ01000000, and consists of
            sequences CHIJ01000001-CHIJ01000163.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001349235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,140
            CDSs (total)                      :: 2,085
            Genes (coding)                    :: 1,931
            CDSs (with protein)               :: 1,931
            Genes (RNA)                       :: 55
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 62 of 154
            Pseudo Genes (incomplete)         :: 95 of 154
            Pseudo Genes (internal stop)      :: 21 of 154
            Pseudo Genes (multiple problems)  :: 22 of 154
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082976
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM2718"
                     /serovar="Serogroup A"
                     /isolation_source="pharynx"
                     /db_xref="taxon:487"
                     /geo_loc_name="Burkina Faso:Nouna Health District"
                     /collection_date="2007"
WGS         CHIJ01000001-CHIJ01000163
WGS_SCAFLD  NZ_CHIJ01000001-NZ_CHIJ01000163
//
LOCUS       NZ_MLKX01000000      2014016 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni strain AWRIB118, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MLKX00000000
VERSION     NZ_MLKX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04297011
            Assembly: GCF_001868055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni
  ORGANISM  Oenococcus oeni
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 2014016)
  AUTHORS   Sternes,P.R. and Borneman,A.R.
  TITLE     Consensus pan-genome assembly of the specialised wine bacterium
            Oenococcus oeni
  JOURNAL   BMC Genomics 17, 308 (2016)
   PUBMED   27118061
  REMARK    Erratum:[BMC Genomics. 2016 Oct 20;17(1):813. doi:
            10.1186/s12864-016-2811-2. PMID: 27765012]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014016)
  AUTHORS   Borneman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2016) Research, The Australia Wine Research
            Institute, Corner of Hartley Grove and Paratoo Road, Adelaide, SA
            5064, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MLKX00000000.1.
            The Oenococcus oeni whole genome shotgun (WGS) project has the
            project accession NZ_MLKX00000000.  This version of the project
            (01) has the accession number NZ_MLKX01000000, and consists of
            sequences MLKX01000001-MLKX01000542.
            Source DNA available from The Australian Wine Research Institute's
            culture collection.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: MIRA v. 4.0rc5
            Genome Coverage       :: 36.16x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001868055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,435
            CDSs (total)                      :: 2,369
            Genes (coding)                    :: 2,110
            CDSs (with protein)               :: 2,110
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 5, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 5, 9 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 259
            CDSs (without protein)            :: 259
            Pseudo Genes (ambiguous residues) :: 1 of 259
            Pseudo Genes (frameshifted)       :: 41 of 259
            Pseudo Genes (incomplete)         :: 198 of 259
            Pseudo Genes (internal stop)      :: 25 of 259
            Pseudo Genes (multiple problems)  :: 6 of 259
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014016
                     /organism="Oenococcus oeni"
                     /mol_type="genomic DNA"
                     /strain="AWRIB118"
                     /isolation_source="Wine"
                     /db_xref="taxon:1247"
                     /geo_loc_name="Australia"
                     /collection_date="1988"
WGS         MLKX01000001-MLKX01000542
WGS_SCAFLD  NZ_MLKX01000001-NZ_MLKX01000542
//
LOCUS       NZ_AKUR01000000      5144692 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycobacteroides abscessus 6G-0212, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AKUR00000000
VERSION     NZ_AKUR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00672657
            Assembly: GCF_000270645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycobacteroides abscessus 6G-0212
  ORGANISM  Mycobacteroides abscessus 6G-0212
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides
            abscessus.
REFERENCE   1  (bases 1 to 5144692)
  AUTHORS   Holland,S., Zelazny,A., Sampaio,E., Olivier,K., Conville,P.,
            Hine,E., Su,Q., Daugherty,S., Shefchek,K., Sengamalay,N.,
            Watkins,K., Tallon,L., Sadzewicz,L., Fraser-Liggett,C. and
            Tettelin,H.
  TITLE     Comparative genomics of clinical isolates of Mycobacterium absessus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5144692)
  AUTHORS   Holland,S., Zelazny,A., Sampaio,E., Olivier,K., Conville,P.,
            Hine,E., Su,Q., Daugherty,S., Shefchek,K., Sengamalay,N.,
            Watkins,K., Tallon,L., Sadzewicz,L., Fraser-Liggett,C. and
            Tettelin,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAR-2012) Institute for Genome Sciences, University
            of Maryland School of Medicine, 801 W. Baltimore St., Baltimore, MD
            21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AKUR00000000.1.
            The Mycobacteroides abscessus 6G-0212 whole genome shotgun (WGS)
            project has the project accession NZ_AKUR00000000.  This version of
            the project (01) has the accession number NZ_AKUR01000000, and
            consists of sequences AKUR01000001-AKUR01000013.
            Bacterial source available from the Biodefense and Emerging
            Infections Research Resources Repository.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Celera Assembler v. 7.0
            Genome Coverage       :: 30x
            Sequencing Technology :: Illumina and 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000270645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:48:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,128
            CDSs (total)                      :: 5,075
            Genes (coding)                    :: 5,029
            CDSs (with protein)               :: 5,029
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 23 of 46
            Pseudo Genes (incomplete)         :: 25 of 46
            Pseudo Genes (internal stop)      :: 2 of 46
            Pseudo Genes (multiple problems)  :: 4 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5144692
                     /organism="Mycobacteroides abscessus 6G-0212"
                     /mol_type="genomic DNA"
                     /strain="6G-0212"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1001739"
                     /collection_date="12-Feb-2007"
WGS         AKUR01000001-AKUR01000013
WGS_SCAFLD  NZ_AKUR01000001-NZ_AKUR01000013
//
LOCUS       NZ_CFMD01000000      2057538 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1482, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CFMD00000000
VERSION     NZ_CFMD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031724
            Assembly: GCF_001349355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CFMD00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CFMD00000000.  This version of the project
            (01) has the accession number NZ_CFMD01000000, and consists of
            sequences CFMD01000001-CFMD01000146.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001349355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:32:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,125
            CDSs (total)                      :: 2,068
            Genes (coding)                    :: 1,916
            CDSs (with protein)               :: 1,916
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 60 of 152
            Pseudo Genes (incomplete)         :: 97 of 152
            Pseudo Genes (internal stop)      :: 18 of 152
            Pseudo Genes (multiple problems)  :: 21 of 152
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057538
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1482"
                     /serovar="Serogroup A"
                     /isolation_source="CSF"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2002"
WGS         CFMD01000001-CFMD01000146
WGS_SCAFLD  NZ_CFMD01000001-NZ_CFMD01000146
//
LOCUS       NZ_AKUE01000000      5139423 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycobacteroides abscessus 6G-0125-R, whole genome shotgun
            sequencing project.
ACCESSION   NZ_AKUE00000000
VERSION     NZ_AKUE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN00672655
            Assembly: GCF_000270985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycobacteroides abscessus 6G-0125-R
  ORGANISM  Mycobacteroides abscessus 6G-0125-R
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Mycobacteriaceae; Mycobacteroides; Mycobacteroides
            abscessus.
REFERENCE   1  (bases 1 to 5139423)
  AUTHORS   Holland,S., Zelazny,A., Sampaio,E., Olivier,K., Conville,P.,
            Hine,E., Su,Q., Daugherty,S., Shefchek,K., Sengamalay,N.,
            Watkins,K., Tallon,L., Sadzewicz,L., Fraser-Liggett,C. and
            Tettelin,H.
  TITLE     Comparative genomics of clinical isolates of Mycobacterium absessus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5139423)
  AUTHORS   Holland,S., Zelazny,A., Sampaio,E., Olivier,K., Conville,P.,
            Hine,E., Su,Q., Daugherty,S., Shefchek,K., Sengamalay,N.,
            Watkins,K., Tallon,L., Sadzewicz,L., Fraser-Liggett,C. and
            Tettelin,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2012) Institute for Genome Sciences, University
            of Maryland School of Medicine, 801 W. Baltimore St., Baltimore, MD
            21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AKUE00000000.1.
            The Mycobacteroides abscessus 6G-0125-R whole genome shotgun (WGS)
            project has the project accession NZ_AKUE00000000.  This version of
            the project (01) has the accession number NZ_AKUE01000000, and
            consists of sequences AKUE01000001-AKUE01000005.
            Bacterial source available from the Biodefense and Emerging
            Infections Research Resources Repository.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Celera Assembler v. 6.1
            Genome Coverage       :: 40x
            Sequencing Technology :: Illumina and 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000270985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:56:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,119
            CDSs (total)                      :: 5,066
            Genes (coding)                    :: 5,022
            CDSs (with protein)               :: 5,022
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 19 of 44
            Pseudo Genes (incomplete)         :: 27 of 44
            Pseudo Genes (internal stop)      :: 2 of 44
            Pseudo Genes (multiple problems)  :: 4 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5139423
                     /organism="Mycobacteroides abscessus 6G-0125-R"
                     /mol_type="genomic DNA"
                     /strain="6G-0125-R"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1001740"
                     /collection_date="25-Jan-2010"
WGS         AKUE01000001-AKUE01000005
WGS_SCAFLD  NZ_AKUE01000001-NZ_AKUE01000005
//
LOCUS       NZ_AZJW01000000      1779079 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni IOEB_B10, whole genome shotgun sequencing project.
ACCESSION   NZ_AZJW00000000
VERSION     NZ_AZJW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02902400
            Assembly: GCF_000761865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni IOEB_B10
  ORGANISM  Oenococcus oeni IOEB_B10
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 1779079)
  AUTHORS   Dimopoulou,M., Vuillemin,M., Campbell-Sills,H., Lucas,P.M.,
            Ballestra,P., Miot-Sertier,C., Favier,M., Coulon,J., Moine,V.,
            Doco,T., Roques,M., Williams,P., Petrel,M., Gontier,E., Moulis,C.,
            Remaud-Simeon,M. and Dols-Lafargue,M.
  TITLE     Exopolysaccharide (EPS) synthesis by Oenococcus oeni: from genes to
            phenotypes
  JOURNAL   PLoS One 9 (6), e98898 (2014)
   PUBMED   24901216
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779079)
  AUTHORS   Campbell-Sills,H., Favier,M., El Khouri,M., Dols-Lafargue,M. and
            Lucas,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2013) Microbiologie du Raisin et du Vin, Institut
            des Sciences de la Vigne et du Vin, 210 Chemin de Leysotte,
            Bordeaux, Aquitaine 33882, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AZJW00000000.1.
            The Oenococcus oeni IOEB_B10 whole genome shotgun (WGS) project has
            the project accession NZ_AZJW00000000.  This version of the project
            (01) has the accession number NZ_AZJW01000000, and consists of
            sequences AZJW01000001-AZJW01000042.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Assembly Name         :: Oeoe_IOEB_B10_1.0
            Genome Coverage       :: 487.35x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000761865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:33:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,852
            CDSs (total)                      :: 1,802
            Genes (coding)                    :: 1,718
            CDSs (with protein)               :: 1,718
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 36 of 84
            Pseudo Genes (incomplete)         :: 31 of 84
            Pseudo Genes (internal stop)      :: 23 of 84
            Pseudo Genes (multiple problems)  :: 6 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779079
                     /organism="Oenococcus oeni IOEB_B10"
                     /mol_type="genomic DNA"
                     /strain="IOEB_B10"
                     /db_xref="taxon:1428421"
WGS         AZJW01000001-AZJW01000042
WGS_SCAFLD  NZ_AZJW01000001-NZ_AZJW01000042
//
LOCUS       NZ_QQJC01000000      2124150 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain M29047, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QQJC00000000
VERSION     NZ_QQJC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09704735
            Assembly: GCF_003494015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2124150)
  AUTHORS   Topaz,N., Boxrud,D., Retchless,A.C., Nichols,M., Chang,H.Y., Hu,F.
            and Wang,X.
  TITLE     BMScan: using whole genome similarity to rapidly and accurately
            identify bacterial meningitis causing species
  JOURNAL   BMC Infect Dis 18 (1), 405 (2018)
   PUBMED   30111301
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124150)
  AUTHORS   Topaz,N., Retchless,A.C., Chang,H.-Y., Hu,F. and Wang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2018) Bacterial Meningitis Lab, Centers for
            Disease Control and Prevention, 1600 Clifton Rd, Atlanta, GA 30333,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQJC00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_QQJC00000000.  This version of the project
            (01) has the accession number NZ_QQJC01000000, and consists of
            sequences QQJC01000001-QQJC01000226.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 169.41104322858573x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003494015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:15:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,223
            CDSs (total)                      :: 2,164
            Genes (coding)                    :: 2,010
            CDSs (with protein)               :: 2,010
            Genes (RNA)                       :: 59
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 43 of 154
            Pseudo Genes (incomplete)         :: 118 of 154
            Pseudo Genes (internal stop)      :: 12 of 154
            Pseudo Genes (multiple problems)  :: 17 of 154
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124150
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="M29047"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /collected_by="Centers for Disease Control and Prevention"
WGS         QQJC01000001-QQJC01000226
WGS_SCAFLD  NZ_QQJC01000001-NZ_QQJC01000226
//
LOCUS       NZ_MLPR01000000      1989477 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni strain AWRIB888, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MLPR00000000
VERSION     NZ_MLPR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04297136
            Assembly: GCF_001869935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni
  ORGANISM  Oenococcus oeni
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 1989477)
  AUTHORS   Sternes,P.R. and Borneman,A.R.
  TITLE     Consensus pan-genome assembly of the specialised wine bacterium
            Oenococcus oeni
  JOURNAL   BMC Genomics 17, 308 (2016)
   PUBMED   27118061
  REMARK    Erratum:[BMC Genomics. 2016 Oct 20;17(1):813. doi:
            10.1186/s12864-016-2811-2. PMID: 27765012]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989477)
  AUTHORS   Borneman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2016) Research, The Australia Wine Research
            Institute, Corner of Hartley Grove and Paratoo Road, Adelaide, SA
            5064, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MLPR00000000.1.
            The Oenococcus oeni whole genome shotgun (WGS) project has the
            project accession NZ_MLPR00000000.  This version of the project
            (01) has the accession number NZ_MLPR01000000, and consists of
            sequences MLPR01000001-MLPR01000485.
            Source DNA available from The Australian Wine Research Institute's
            culture collection.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: MIRA v. 4.0rc5
            Genome Coverage       :: 55.98x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001869935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,388
            CDSs (total)                      :: 2,330
            Genes (coding)                    :: 2,064
            CDSs (with protein)               :: 2,064
            Genes (RNA)                       :: 58
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 266
            CDSs (without protein)            :: 266
            Pseudo Genes (ambiguous residues) :: 0 of 266
            Pseudo Genes (frameshifted)       :: 51 of 266
            Pseudo Genes (incomplete)         :: 201 of 266
            Pseudo Genes (internal stop)      :: 20 of 266
            Pseudo Genes (multiple problems)  :: 6 of 266
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989477
                     /organism="Oenococcus oeni"
                     /mol_type="genomic DNA"
                     /strain="AWRIB888"
                     /isolation_source="Wine"
                     /db_xref="taxon:1247"
                     /collection_date="1985"
WGS         MLPR01000001-MLPR01000485
WGS_SCAFLD  NZ_MLPR01000001-NZ_MLPR01000485
//
LOCUS       NZ_MLLK01000000      1978057 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni strain AWRIB141, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MLLK00000000
VERSION     NZ_MLLK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04297024
            Assembly: GCF_001868185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni
  ORGANISM  Oenococcus oeni
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 1978057)
  AUTHORS   Sternes,P.R. and Borneman,A.R.
  TITLE     Consensus pan-genome assembly of the specialised wine bacterium
            Oenococcus oeni
  JOURNAL   BMC Genomics 17, 308 (2016)
   PUBMED   27118061
  REMARK    Erratum:[BMC Genomics. 2016 Oct 20;17(1):813. doi:
            10.1186/s12864-016-2811-2. PMID: 27765012]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1978057)
  AUTHORS   Borneman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2016) Research, The Australia Wine Research
            Institute, Corner of Hartley Grove and Paratoo Road, Adelaide, SA
            5064, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MLLK00000000.1.
            The Oenococcus oeni whole genome shotgun (WGS) project has the
            project accession NZ_MLLK00000000.  This version of the project
            (01) has the accession number NZ_MLLK01000000, and consists of
            sequences MLLK01000001-MLLK01000532.
            Source DNA available from The Australian Wine Research Institute's
            culture collection.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: MIRA v. 4.0rc5
            Genome Coverage       :: 43.63x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001868185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,356
            CDSs (total)                      :: 2,294
            Genes (coding)                    :: 2,035
            CDSs (with protein)               :: 2,035
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 4, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3, 6 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 259
            CDSs (without protein)            :: 259
            Pseudo Genes (ambiguous residues) :: 0 of 259
            Pseudo Genes (frameshifted)       :: 44 of 259
            Pseudo Genes (incomplete)         :: 192 of 259
            Pseudo Genes (internal stop)      :: 30 of 259
            Pseudo Genes (multiple problems)  :: 7 of 259
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1978057
                     /organism="Oenococcus oeni"
                     /mol_type="genomic DNA"
                     /strain="AWRIB141"
                     /isolation_source="Wine"
                     /db_xref="taxon:1247"
                     /geo_loc_name="Australia"
                     /collection_date="1980"
WGS         MLLK01000001-MLLK01000532
WGS_SCAFLD  NZ_MLLK01000001-NZ_MLLK01000532
//
LOCUS       NZ_SATL01000000      3914012 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Morganella morganii strain C135, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SATL00000000
VERSION     NZ_SATL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10689945
            Assembly: GCF_004349695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 3914012)
  AUTHORS   Palm,N.W.
  TITLE     A forward chemical genetic screen reveals gut microbiota
            metabolites that modulate host physiology
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3914012)
  AUTHORS   Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2019) Immunobiology, Yale University School of
            Medicine, 333 Cedar Street, New Haven, CT 06511, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SATL00000000.1.
            The Morganella morganii whole genome shotgun (WGS) project has the
            project accession NZ_SATL00000000.  This version of the project
            (01) has the accession number NZ_SATL01000000, and consists of
            sequences SATL01000001-SATL01000046.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2018
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 142x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004349695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:55:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,744
            CDSs (total)                      :: 3,687
            Genes (coding)                    :: 3,647
            CDSs (with protein)               :: 3,647
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 7 of 40
            Pseudo Genes (incomplete)         :: 35 of 40
            Pseudo Genes (internal stop)      :: 3 of 40
            Pseudo Genes (multiple problems)  :: 5 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3914012
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="C135"
                     /host="Homo sapiens"
                     /db_xref="taxon:582"
                     /geo_loc_name="USA"
                     /lat_lon="41.31 N 72.93 W"
                     /collection_date="2018-12"
WGS         SATL01000001-SATL01000046
WGS_SCAFLD  NZ_SATL01000001-NZ_SATL01000046
//
LOCUS       NZ_CFME01000000      2075363 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain NM1264, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CFME00000000
VERSION     NZ_CFME00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1031718
            Assembly: GCF_001349335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CFME00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_CFME00000000.  This version of the project
            (01) has the accession number NZ_CFME01000000, and consists of
            sequences CFME01000001-CFME01000153.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001349335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:31:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,131
            CDSs (total)                      :: 2,075
            Genes (coding)                    :: 1,924
            CDSs (with protein)               :: 1,924
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 58 of 151
            Pseudo Genes (incomplete)         :: 97 of 151
            Pseudo Genes (internal stop)      :: 17 of 151
            Pseudo Genes (multiple problems)  :: 19 of 151
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075363
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="NM1264"
                     /serovar="Serogroup A"
                     /isolation_source="CSF"
                     /db_xref="taxon:487"
                     /geo_loc_name="Ghana:Kassena Nankana District"
                     /collection_date="2001"
WGS         CFME01000001-CFME01000153
WGS_SCAFLD  NZ_CFME01000001-NZ_CFME01000153
//
LOCUS       NZ_JADIAQ010000000   3970629 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Morganella morganii subsp. morganii strain FS110888, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JADIAQ000000000
VERSION     NZ_JADIAQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16534584
            Assembly: GCF_018475225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Morganella morganii subsp. morganii
  ORGANISM  Morganella morganii subsp. morganii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 3970629)
  AUTHORS   Zhou,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2020) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            No. 20, Dongdajie, Fengtai, Beijing 10071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADIAQ000000000.1.
            The Morganella morganii subsp. morganii whole genome shotgun (WGS)
            project has the project accession NZ_JADIAQ000000000.  This version
            of the project (01) has the accession number NZ_JADIAQ010000000,
            and consists of sequences JADIAQ010000001-JADIAQ010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018475225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:51:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,821
            CDSs (total)                      :: 3,727
            Genes (coding)                    :: 3,685
            CDSs (with protein)               :: 3,685
            Genes (RNA)                       :: 94
            rRNAs                             :: 7, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 6, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 12 of 42
            Pseudo Genes (incomplete)         :: 30 of 42
            Pseudo Genes (internal stop)      :: 8 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3970629
                     /organism="Morganella morganii subsp. morganii"
                     /mol_type="genomic DNA"
                     /strain="FS110888"
                     /isolation_source="secretions"
                     /host="Homo sapiens"
                     /sub_species="morganii"
                     /db_xref="taxon:180434"
                     /geo_loc_name="China:Foshan"
                     /collection_date="2018"
WGS         JADIAQ010000001-JADIAQ010000040
WGS_SCAFLD  NZ_JADIAQ010000001-NZ_JADIAQ010000040
//
LOCUS       NZ_MLPT01000000      2036137 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Oenococcus oeni strain AWRIB897, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MLPT00000000
VERSION     NZ_MLPT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04297138
            Assembly: GCF_001869295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Oenococcus oeni
  ORGANISM  Oenococcus oeni
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Oenococcus.
REFERENCE   1  (bases 1 to 2036137)
  AUTHORS   Sternes,P.R. and Borneman,A.R.
  TITLE     Consensus pan-genome assembly of the specialised wine bacterium
            Oenococcus oeni
  JOURNAL   BMC Genomics 17, 308 (2016)
   PUBMED   27118061
  REMARK    Erratum:[BMC Genomics. 2016 Oct 20;17(1):813. doi:
            10.1186/s12864-016-2811-2. PMID: 27765012]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036137)
  AUTHORS   Borneman,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2016) Research, The Australia Wine Research
            Institute, Corner of Hartley Grove and Paratoo Road, Adelaide, SA
            5064, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MLPT00000000.1.
            The Oenococcus oeni whole genome shotgun (WGS) project has the
            project accession NZ_MLPT00000000.  This version of the project
            (01) has the accession number NZ_MLPT01000000, and consists of
            sequences MLPT01000001-MLPT01000560.
            Source DNA available from The Australian Wine Research Institute's
            culture collection.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: MIRA v. 4.0rc5
            Genome Coverage       :: 35.38x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001869295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,488
            CDSs (total)                      :: 2,425
            Genes (coding)                    :: 2,139
            CDSs (with protein)               :: 2,139
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 3, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 6 (16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 286
            CDSs (without protein)            :: 286
            Pseudo Genes (ambiguous residues) :: 1 of 286
            Pseudo Genes (frameshifted)       :: 43 of 286
            Pseudo Genes (incomplete)         :: 224 of 286
            Pseudo Genes (internal stop)      :: 23 of 286
            Pseudo Genes (multiple problems)  :: 5 of 286
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036137
                     /organism="Oenococcus oeni"
                     /mol_type="genomic DNA"
                     /strain="AWRIB897"
                     /isolation_source="Wine"
                     /db_xref="taxon:1247"
WGS         MLPT01000001-MLPT01000560
WGS_SCAFLD  NZ_MLPT01000001-NZ_MLPT01000560
//
LOCUS       NZ_JAEHFS010000000   4111694 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Morganella morganii subsp. morganii strain 170516602, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAEHFS000000000
VERSION     NZ_JAEHFS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17080432
            Assembly: GCF_018456285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Morganella morganii subsp. morganii
  ORGANISM  Morganella morganii subsp. morganii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 4111694)
  AUTHORS   Zhou,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2020) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            No. 20, Dongdajie, Fengtai, Beijing 10071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEHFS000000000.1.
            The Morganella morganii subsp. morganii whole genome shotgun (WGS)
            project has the project accession NZ_JAEHFS000000000.  This version
            of the project (01) has the accession number NZ_JAEHFS010000000,
            and consists of sequences JAEHFS010000001-JAEHFS010000053.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_018456285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:50:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,056
            CDSs (total)                      :: 3,981
            Genes (coding)                    :: 3,939
            CDSs (with protein)               :: 3,939
            Genes (RNA)                       :: 75
            rRNAs                             :: 2, 3, 4 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 11 of 42
            Pseudo Genes (incomplete)         :: 31 of 42
            Pseudo Genes (internal stop)      :: 7 of 42
            Pseudo Genes (multiple problems)  :: 6 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111694
                     /organism="Morganella morganii subsp. morganii"
                     /mol_type="genomic DNA"
                     /strain="170516602"
                     /host="Homo sapiens"
                     /sub_species="morganii"
                     /db_xref="taxon:180434"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="2017"
WGS         JAEHFS010000001-JAEHFS010000053
WGS_SCAFLD  NZ_JAEHFS010000001-NZ_JAEHFS010000053
//
LOCUS       NZ_QQGO01000000      2049969 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain M29046, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QQGO00000000
VERSION     NZ_QQGO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09704734
            Assembly: GCF_003490795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2049969)
  AUTHORS   Topaz,N., Boxrud,D., Retchless,A.C., Nichols,M., Chang,H.Y., Hu,F.
            and Wang,X.
  TITLE     BMScan: using whole genome similarity to rapidly and accurately
            identify bacterial meningitis causing species
  JOURNAL   BMC Infect Dis 18 (1), 405 (2018)
   PUBMED   30111301
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049969)
  AUTHORS   Topaz,N., Retchless,A.C., Chang,H.-Y., Hu,F. and Wang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2018) Bacterial Meningitis Lab, Centers for
            Disease Control and Prevention, 1600 Clifton Rd, Atlanta, GA 30333,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQGO00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_QQGO00000000.  This version of the project
            (01) has the accession number NZ_QQGO01000000, and consists of
            sequences QQGO01000001-QQGO01000211.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 214.8221383723365x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003490795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:08:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,146
            CDSs (total)                      :: 2,086
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 60
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 41 of 152
            Pseudo Genes (incomplete)         :: 113 of 152
            Pseudo Genes (internal stop)      :: 17 of 152
            Pseudo Genes (multiple problems)  :: 18 of 152
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049969
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="M29046"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /collected_by="Centers for Disease Control and Prevention"
WGS         QQGO01000001-QQGO01000211
WGS_SCAFLD  NZ_QQGO01000001-NZ_QQGO01000211
//
LOCUS       NZ_JWMS01000000      2088063 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain Nm130933, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWMS00000000
VERSION     NZ_JWMS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03266442
            Assembly: GCF_003995895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2088063)
  AUTHORS   Zhu,B.
  TITLE     Subtyping of Neisseria meningitidis based on core genome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2088063)
  AUTHORS   Zhu,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2014) Department of Respiratory Infectious
            Diseases, National Institute for Communicable Disease Control and
            Prevention, Chinese Center for Disease Control and Prevention, 155,
            Changbai Road, Beijing 102206, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWMS00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_JWMS00000000.  This version of the project
            (01) has the accession number NZ_JWMS01000000, and consists of
            sequences JWMS01000001-JWMS01000081.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003995895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:23:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,128
            CDSs (total)                      :: 2,065
            Genes (coding)                    :: 1,907
            CDSs (with protein)               :: 1,907
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 46 of 158
            Pseudo Genes (incomplete)         :: 126 of 158
            Pseudo Genes (internal stop)      :: 17 of 158
            Pseudo Genes (multiple problems)  :: 27 of 158
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088063
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="Nm130933"
                     /isolation_source="nasopharyngeal swabs"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="China: Hebei province"
                     /lat_lon="38.0 N 114.5 E"
                     /collection_date="2009-01-01"
                     /collected_by="Hebei CDC"
WGS         JWMS01000001-JWMS01000081
WGS_SCAFLD  NZ_JWMS01000001-NZ_JWMS01000081
//
LOCUS       NZ_JADWTD010000000   2158574 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 1599, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWTD000000000
VERSION     NZ_JADWTD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967574
            Assembly: GCF_022574845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2158574)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2158574)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWTD000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWTD000000000.  This version of the
            project (01) has the accession number NZ_JADWTD010000000, and
            consists of sequences JADWTD010000001-JADWTD010000135.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022574845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:03:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,269
            CDSs (total)                      :: 2,218
            Genes (coding)                    :: 1,985
            CDSs (with protein)               :: 1,985
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 117 of 233
            Pseudo Genes (incomplete)         :: 128 of 233
            Pseudo Genes (internal stop)      :: 41 of 233
            Pseudo Genes (multiple problems)  :: 52 of 233
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158574
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="1599"
                     /isolation_source="Urethral"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.6006 S 30.3794 E"
                     /collection_date="2013"
                     /collected_by="UKZN"
WGS         JADWTD010000001-JADWTD010000135
WGS_SCAFLD  NZ_JADWTD010000001-NZ_JADWTD010000135
//
LOCUS       NZ_JADWUB010000000   2164749 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 1588, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWUB000000000
VERSION     NZ_JADWUB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967591
            Assembly: GCF_022575255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2164749)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2164749)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWUB000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWUB000000000.  This version of the
            project (01) has the accession number NZ_JADWUB010000000, and
            consists of sequences JADWUB010000001-JADWUB010000156.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022575255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:03:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,281
            CDSs (total)                      :: 2,230
            Genes (coding)                    :: 1,998
            CDSs (with protein)               :: 1,998
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 232
            CDSs (without protein)            :: 232
            Pseudo Genes (ambiguous residues) :: 0 of 232
            Pseudo Genes (frameshifted)       :: 113 of 232
            Pseudo Genes (incomplete)         :: 128 of 232
            Pseudo Genes (internal stop)      :: 39 of 232
            Pseudo Genes (multiple problems)  :: 47 of 232
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164749
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="1588"
                     /isolation_source="Vaginal"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.6006 S 30.3794 E"
                     /collection_date="2014"
                     /collected_by="UKZN"
WGS         JADWUB010000001-JADWUB010000156
WGS_SCAFLD  NZ_JADWUB010000001-NZ_JADWUB010000156
//
LOCUS       NZ_JADWUH010000000   2151065 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 1932, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWUH000000000
VERSION     NZ_JADWUH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967560
            Assembly: GCF_022575335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2151065)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2151065)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWUH000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWUH000000000.  This version of the
            project (01) has the accession number NZ_JADWUH010000000, and
            consists of sequences JADWUH010000001-JADWUH010000153.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022575335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:03:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,261
            CDSs (total)                      :: 2,210
            Genes (coding)                    :: 1,976
            CDSs (with protein)               :: 1,976
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 234
            CDSs (without protein)            :: 234
            Pseudo Genes (ambiguous residues) :: 0 of 234
            Pseudo Genes (frameshifted)       :: 111 of 234
            Pseudo Genes (incomplete)         :: 131 of 234
            Pseudo Genes (internal stop)      :: 37 of 234
            Pseudo Genes (multiple problems)  :: 43 of 234
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151065
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="1932"
                     /isolation_source="Urethral"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.8587 S 31.0218 E"
                     /collection_date="2015"
                     /collected_by="NICD"
WGS         JADWUH010000001-JADWUH010000153
WGS_SCAFLD  NZ_JADWUH010000001-NZ_JADWUH010000153
//
LOCUS       NZ_QEKS01000000      5052004 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain PNA 14-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QEKS00000000
VERSION     NZ_QEKS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08769424
            Assembly: GCF_003096515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5052004)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5052004)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2018) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QEKS00000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_QEKS00000000.  This version of the project
            (01) has the accession number NZ_QEKS01000000, and consists of
            sequences QEKS01000001-QEKS01000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Expected Final Version :: No
            Genome Coverage        :: 230.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003096515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:18:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,796
            CDSs (total)                      :: 4,695
            Genes (coding)                    :: 4,623
            CDSs (with protein)               :: 4,623
            Genes (RNA)                       :: 101
            rRNAs                             :: 4, 8, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 3, 8, 3 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 26 of 72
            Pseudo Genes (incomplete)         :: 49 of 72
            Pseudo Genes (internal stop)      :: 22 of 72
            Pseudo Genes (multiple problems)  :: 20 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5052004
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="PNA 14-1"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Georgia"
WGS         QEKS01000001-QEKS01000039
WGS_SCAFLD  NZ_QEKS01000001-NZ_QEKS01000039
//
LOCUS       NZ_JADWUQ010000000   2165438 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 8133, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWUQ000000000
VERSION     NZ_JADWUQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967551
            Assembly: GCF_022575475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2165438)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2165438)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWUQ000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWUQ000000000.  This version of the
            project (01) has the accession number NZ_JADWUQ010000000, and
            consists of sequences JADWUQ010000001-JADWUQ010000157.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022575475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:03:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,277
            CDSs (total)                      :: 2,226
            Genes (coding)                    :: 1,994
            CDSs (with protein)               :: 1,994
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 232
            CDSs (without protein)            :: 232
            Pseudo Genes (ambiguous residues) :: 0 of 232
            Pseudo Genes (frameshifted)       :: 110 of 232
            Pseudo Genes (incomplete)         :: 129 of 232
            Pseudo Genes (internal stop)      :: 39 of 232
            Pseudo Genes (multiple problems)  :: 45 of 232
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165438
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="8133"
                     /isolation_source="Urethral"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.8587 S 31.0218 E"
                     /collection_date="2015"
                     /collected_by="NICD"
WGS         JADWUQ010000001-JADWUQ010000157
WGS_SCAFLD  NZ_JADWUQ010000001-NZ_JADWUQ010000157
//
LOCUS       NZ_QQLF01000000      2092820 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain M25159, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QQLF00000000
VERSION     NZ_QQLF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09704704
            Assembly: GCF_003492975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2092820)
  AUTHORS   Topaz,N., Boxrud,D., Retchless,A.C., Nichols,M., Chang,H.Y., Hu,F.
            and Wang,X.
  TITLE     BMScan: using whole genome similarity to rapidly and accurately
            identify bacterial meningitis causing species
  JOURNAL   BMC Infect Dis 18 (1), 405 (2018)
   PUBMED   30111301
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092820)
  AUTHORS   Topaz,N., Retchless,A.C., Chang,H.-Y., Hu,F. and Wang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2018) Bacterial Meningitis Lab, Centers for
            Disease Control and Prevention, 1600 Clifton Rd, Atlanta, GA 30333,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQLF00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_QQLF00000000.  This version of the project
            (01) has the accession number NZ_QQLF01000000, and consists of
            sequences QQLF01000001-QQLF01000209.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 139.94489328704807x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003492975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:07:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,148
            CDSs (total)                      :: 2,095
            Genes (coding)                    :: 1,944
            CDSs (with protein)               :: 1,944
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 47 of 151
            Pseudo Genes (incomplete)         :: 114 of 151
            Pseudo Genes (internal stop)      :: 15 of 151
            Pseudo Genes (multiple problems)  :: 23 of 151
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092820
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="M25159"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /collected_by="Centers for Disease Control and Prevention"
WGS         QQLF01000001-QQLF01000209
WGS_SCAFLD  NZ_QQLF01000001-NZ_QQLF01000209
//
LOCUS       NZ_JADWUC010000000   2168056 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 1931, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWUC000000000
VERSION     NZ_JADWUC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967590
            Assembly: GCF_022575215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2168056)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2168056)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWUC000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWUC000000000.  This version of the
            project (01) has the accession number NZ_JADWUC010000000, and
            consists of sequences JADWUC010000001-JADWUC010000135.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022575215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:04:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,294
            CDSs (total)                      :: 2,243
            Genes (coding)                    :: 2,010
            CDSs (with protein)               :: 2,010
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 107 of 233
            Pseudo Genes (incomplete)         :: 130 of 233
            Pseudo Genes (internal stop)      :: 42 of 233
            Pseudo Genes (multiple problems)  :: 45 of 233
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168056
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="1931"
                     /isolation_source="Vaginal"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.6006 S 30.3794 E"
                     /collection_date="2014"
                     /collected_by="UKZN"
WGS         JADWUC010000001-JADWUC010000135
WGS_SCAFLD  NZ_JADWUC010000001-NZ_JADWUC010000135
//
LOCUS       NZ_JADWTG010000000   2107322 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 1582, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWTG000000000
VERSION     NZ_JADWTG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967563
            Assembly: GCF_022574975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2107322)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2107322)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWTG000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWTG000000000.  This version of the
            project (01) has the accession number NZ_JADWTG010000000, and
            consists of sequences JADWTG010000001-JADWTG010000128.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022574975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:09:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,217
            CDSs (total)                      :: 2,166
            Genes (coding)                    :: 1,933
            CDSs (with protein)               :: 1,933
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 111 of 233
            Pseudo Genes (incomplete)         :: 130 of 233
            Pseudo Genes (internal stop)      :: 39 of 233
            Pseudo Genes (multiple problems)  :: 45 of 233
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107322
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="1582"
                     /isolation_source="Urethral"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.6006 S 30.3794 E"
                     /collection_date="2013"
                     /collected_by="UKZN"
WGS         JADWTG010000001-JADWTG010000128
WGS_SCAFLD  NZ_JADWTG010000001-NZ_JADWTG010000128
//
LOCUS       NZ_JADWVD010000000   2126243 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 1931, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWVD000000000
VERSION     NZ_JADWVD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967570
            Assembly: GCF_022575755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2126243)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2126243)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWVD000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWVD000000000.  This version of the
            project (01) has the accession number NZ_JADWVD010000000, and
            consists of sequences JADWVD010000001-JADWVD010000150.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022575755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:59:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,238
            CDSs (total)                      :: 2,187
            Genes (coding)                    :: 1,954
            CDSs (with protein)               :: 1,954
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 112 of 233
            Pseudo Genes (incomplete)         :: 130 of 233
            Pseudo Genes (internal stop)      :: 41 of 233
            Pseudo Genes (multiple problems)  :: 48 of 233
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126243
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="1931"
                     /isolation_source="Urethral"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.6006 S 30.3794 E"
                     /collection_date="2013"
                     /collected_by="UKZN"
WGS         JADWVD010000001-JADWVD010000150
WGS_SCAFLD  NZ_JADWVD010000001-NZ_JADWVD010000150
//
LOCUS       NZ_JWNQ01000000      2092550 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria meningitidis strain Nm421014, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWNQ00000000
VERSION     NZ_JWNQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03267209
            Assembly: GCF_003995975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria meningitidis
  ORGANISM  Neisseria meningitidis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2092550)
  AUTHORS   Zhu,B.
  TITLE     Subtyping of N. meningitidis based on genome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2092550)
  AUTHORS   Zhu,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2014) Department of Respiratory Infectious
            Diseases, National Institute for Communicable Disease Control and
            Prevention, Chinese Center for Disease Control and Prevention, 155,
            Changbai Road, Beijing 102206, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWNQ00000000.1.
            The Neisseria meningitidis whole genome shotgun (WGS) project has
            the project accession NZ_JWNQ00000000.  This version of the project
            (01) has the accession number NZ_JWNQ01000000, and consists of
            sequences JWNQ01000001-JWNQ01000088.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003995975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:30:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,132
            CDSs (total)                      :: 2,070
            Genes (coding)                    :: 1,911
            CDSs (with protein)               :: 1,911
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 47 of 159
            Pseudo Genes (incomplete)         :: 120 of 159
            Pseudo Genes (internal stop)      :: 11 of 159
            Pseudo Genes (multiple problems)  :: 17 of 159
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092550
                     /organism="Neisseria meningitidis"
                     /mol_type="genomic DNA"
                     /strain="Nm421014"
                     /isolation_source="Cerebro-Spinal Fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:487"
                     /geo_loc_name="China: Hubei province"
                     /lat_lon="30.6 N 114.3 E"
                     /collection_date="2010-01-01"
                     /collected_by="Hubei CDC"
WGS         JWNQ01000001-JWNQ01000088
WGS_SCAFLD  NZ_JWNQ01000001-NZ_JWNQ01000088
//
LOCUS       NZ_MAPT01000000      2258903 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pasteurella multocida strain Pm72-4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MAPT00000000
VERSION     NZ_MAPT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05281834
            Assembly: GCF_004286965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pasteurella multocida
  ORGANISM  Pasteurella multocida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Pasteurella.
REFERENCE   1  (bases 1 to 2258903)
  AUTHORS   Cao,P., Guo,D., Liu,J., Jiang,Q., Xu,Z. and Qu,L.
  TITLE     Genome-Wide Analyses Reveal Genes Subject to Positive Selection in
            Pasteurella multocida
  JOURNAL   Front Microbiol 8, 961 (2017)
   PUBMED   28611758
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258903)
  AUTHORS   Guo,D., Cao,P. and Qu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2016) Division of Zoonosis, Harbin Veterinary
            Research Institute, 427 Maduan Street, Nanggang District, Harbin,
            Heilongjiang 150001, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MAPT00000000.1.
            The Pasteurella multocida whole genome shotgun (WGS) project has
            the project accession NZ_MAPT00000000.  This version of the project
            (01) has the accession number NZ_MAPT01000000, and consists of
            sequences MAPT01000001-MAPT01000026.
            Annotated using prokka 1.12-beta from
            https://github.com/tseemann/prokka.
            
            ##Genome-Assembly-Data-START##
            Assembly Method :: SOAPdenovo v. v2.04
            Genome Coverage :: 528.0x
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004286965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:28:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,126
            CDSs (total)                      :: 2,066
            Genes (coding)                    :: 2,051
            CDSs (with protein)               :: 2,051
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 6 of 15
            Pseudo Genes (incomplete)         :: 6 of 15
            Pseudo Genes (internal stop)      :: 3 of 15
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258903
                     /organism="Pasteurella multocida"
                     /mol_type="genomic DNA"
                     /strain="Pm72-4"
                     /host="goose"
                     /db_xref="taxon:747"
                     /geo_loc_name="China: Jiangsu"
                     /collection_date="1972"
WGS         MAPT01000001-MAPT01000026
WGS_SCAFLD  NZ_MAPT01000001-NZ_MAPT01000026
//
LOCUS       NZ_JADWVA010000000   2111445 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 8136, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWVA000000000
VERSION     NZ_JADWVA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967541
            Assembly: GCF_022575765.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2111445)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2111445)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWVA000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWVA000000000.  This version of the
            project (01) has the accession number NZ_JADWVA010000000, and
            consists of sequences JADWVA010000001-JADWVA010000167.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022575765.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:04:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,222
            CDSs (total)                      :: 2,173
            Genes (coding)                    :: 1,941
            CDSs (with protein)               :: 1,941
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 232
            CDSs (without protein)            :: 232
            Pseudo Genes (ambiguous residues) :: 0 of 232
            Pseudo Genes (frameshifted)       :: 110 of 232
            Pseudo Genes (incomplete)         :: 130 of 232
            Pseudo Genes (internal stop)      :: 36 of 232
            Pseudo Genes (multiple problems)  :: 42 of 232
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111445
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="8136"
                     /isolation_source="Vaginal"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.8587 S 31.0218 E"
                     /collection_date="2016-05-19"
                     /collected_by="CAPRISA"
WGS         JADWVA010000001-JADWVA010000167
WGS_SCAFLD  NZ_JADWVA010000001-NZ_JADWVA010000167
//
LOCUS       NZ_MAPR01000000      2265782 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pasteurella multocida strain C51-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MAPR00000000
VERSION     NZ_MAPR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05281837
            Assembly: GCF_004287035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pasteurella multocida
  ORGANISM  Pasteurella multocida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Pasteurella.
REFERENCE   1  (bases 1 to 2265782)
  AUTHORS   Cao,P., Guo,D., Liu,J., Jiang,Q., Xu,Z. and Qu,L.
  TITLE     Genome-Wide Analyses Reveal Genes Subject to Positive Selection in
            Pasteurella multocida
  JOURNAL   Front Microbiol 8, 961 (2017)
   PUBMED   28611758
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265782)
  AUTHORS   Guo,D., Cao,P. and Qu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUN-2016) Division of Zoonosis, Harbin Veterinary
            Research Institute, 427 Maduan Street, Nanggang District, Harbin,
            Heilongjiang 150001, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MAPR00000000.1.
            The Pasteurella multocida whole genome shotgun (WGS) project has
            the project accession NZ_MAPR00000000.  This version of the project
            (01) has the accession number NZ_MAPR01000000, and consists of
            sequences MAPR01000001-MAPR01000025.
            Annotated using prokka 1.12-beta from
            https://github.com/tseemann/prokka.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. v2.04
            Genome Coverage       :: 612.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004287035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:32:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,132
            CDSs (total)                      :: 2,075
            Genes (coding)                    :: 2,061
            CDSs (with protein)               :: 2,061
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 3 of 14
            Pseudo Genes (incomplete)         :: 8 of 14
            Pseudo Genes (internal stop)      :: 4 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265782
                     /organism="Pasteurella multocida"
                     /mol_type="genomic DNA"
                     /strain="C51-3"
                     /host="rabbit"
                     /db_xref="taxon:747"
                     /geo_loc_name="China: Inner Mongolia"
                     /collection_date="1986"
WGS         MAPR01000001-MAPR01000025
WGS_SCAFLD  NZ_MAPR01000001-NZ_MAPR01000025
//
LOCUS       NZ_JADWVF010000000   2164109 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain 1599, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADWVF000000000
VERSION     NZ_JADWVF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16967568
            Assembly: GCF_022575795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2164109)
  AUTHORS   Mitchev,N.
  TITLE     Neisseria gonorrhoeae genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2164109)
  AUTHORS   Mitchev,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2020) Medical Microbiology, University of
            KwaZulu-Natal, 719 Umbilo Road, Durban, KwaZulu-Natal 4001, South
            Africa
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADWVF000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_JADWVF000000000.  This version of the
            project (01) has the accession number NZ_JADWVF010000000, and
            consists of sequences JADWVF010000001-JADWVF010000145.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022575795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:04:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,280
            CDSs (total)                      :: 2,229
            Genes (coding)                    :: 1,995
            CDSs (with protein)               :: 1,995
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 234
            CDSs (without protein)            :: 234
            Pseudo Genes (ambiguous residues) :: 0 of 234
            Pseudo Genes (frameshifted)       :: 115 of 234
            Pseudo Genes (incomplete)         :: 128 of 234
            Pseudo Genes (internal stop)      :: 40 of 234
            Pseudo Genes (multiple problems)  :: 48 of 234
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164109
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="1599"
                     /isolation_source="Urethral"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="South Africa: KwaZulu-Natal"
                     /lat_lon="29.6006 S 30.3794 E"
                     /collection_date="2013"
                     /collected_by="UKZN"
WGS         JADWVF010000001-JADWVF010000145
WGS_SCAFLD  NZ_JADWVF010000001-NZ_JADWVF010000145
//
LOCUS       NZ_MBAG01000000      2253947 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pasteurella multocida strain C51-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MBAG00000000
VERSION     NZ_MBAG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05281836
            Assembly: GCF_004286935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pasteurella multocida
  ORGANISM  Pasteurella multocida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Pasteurella.
REFERENCE   1  (bases 1 to 2253947)
  AUTHORS   Cao,P., Guo,D., Liu,J., Jiang,Q., Xu,Z. and Qu,L.
  TITLE     Genome-Wide Analyses Reveal Genes Subject to Positive Selection in
            Pasteurella multocida
  JOURNAL   Front Microbiol 8, 961 (2017)
   PUBMED   28611758
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253947)
  AUTHORS   Guo,D., Cao,P. and Qu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2016) Division of Zoonosis, Harbin Veterinary
            Research Institute, 427 Maduan Street, Nanggang District, Harbin,
            Heilongjiang 150001, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MBAG00000000.1.
            The Pasteurella multocida whole genome shotgun (WGS) project has
            the project accession NZ_MBAG00000000.  This version of the project
            (01) has the accession number NZ_MBAG01000000, and consists of
            sequences MBAG01000001-MBAG01000031.
            Annotated using prokka 1.12-beta from
            https://github.com/tseemann/prokka.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. v2.04
            Genome Coverage       :: 504.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004286935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:41:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,147
            CDSs (total)                      :: 2,083
            Genes (coding)                    :: 2,068
            CDSs (with protein)               :: 2,068
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 6 of 15
            Pseudo Genes (incomplete)         :: 7 of 15
            Pseudo Genes (internal stop)      :: 3 of 15
            Pseudo Genes (multiple problems)  :: 1 of 15
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253947
                     /organism="Pasteurella multocida"
                     /mol_type="genomic DNA"
                     /strain="C51-2"
                     /host="rabbit"
                     /db_xref="taxon:747"
                     /geo_loc_name="China: Henan"
                     /collection_date="1987"
WGS         MBAG01000001-MBAG01000031
WGS_SCAFLD  NZ_MBAG01000001-NZ_MBAG01000031
//
LOCUS       NZ_CAXDZN010000000   2149486 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Neisseria gonorrhoeae strain FF05-02-104 isolate FF05_02-104, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAXDZN000000000
VERSION     NZ_CAXDZN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114565899
            Sequence Read Archive: ERR12188081
            Assembly: GCF_963994205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Neisseria gonorrhoeae
  ORGANISM  Neisseria gonorrhoeae
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Neisseriales; Neisseriaceae; Neisseria.
REFERENCE   1  (bases 1 to 2149486)
  AUTHORS   Kelvin,L.Sarenje., Marco van,Zwetselaar., Owen,Ngalamika.,
            Happiness,Kumburu., Margaret,C.Maimbolwa., Amon,Siame.,
            Sody,M.Munsaka. and Geoffrey,Kwenda.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2024) School of Health Sciences, University of
            Zambia, Lusaka, Zambia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAXDZN000000000.1.
            The Neisseria gonorrhoeae whole genome shotgun (WGS) project has
            the project accession NZ_CAXDZN000000000.  This version of the
            project (01) has the accession number NZ_CAXDZN010000000, and
            consists of sequences CAXDZN010000001-CAXDZN010000162.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963994205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:10:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,266
            CDSs (total)                      :: 2,209
            Genes (coding)                    :: 1,979
            CDSs (with protein)               :: 1,979
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 230
            CDSs (without protein)            :: 230
            Pseudo Genes (ambiguous residues) :: 0 of 230
            Pseudo Genes (frameshifted)       :: 112 of 230
            Pseudo Genes (incomplete)         :: 125 of 230
            Pseudo Genes (internal stop)      :: 35 of 230
            Pseudo Genes (multiple problems)  :: 41 of 230
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149486
                     /organism="Neisseria gonorrhoeae"
                     /mol_type="genomic DNA"
                     /strain="FF05-02-104"
                     /isolate="FF05_02-104"
                     /host="Homo sapiens"
                     /db_xref="taxon:485"
                     /geo_loc_name="Zambia"
                     /collection_date="2020-01-28"
                     /collected_by="Chipata Hospital"
WGS         CAXDZN010000001-CAXDZN010000162
WGS_SCAFLD  NZ_CAXDZN010000001-NZ_CAXDZN010000162
//
LOCUS       NZ_PPVG01000000      2275427 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pasteurella multocida strain HNA01, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PPVG00000000
VERSION     NZ_PPVG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08386586
            Assembly: GCF_013012845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pasteurella multocida
  ORGANISM  Pasteurella multocida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Pasteurella.
REFERENCE   1  (bases 1 to 2275427)
  AUTHORS   Peng,Z., Liang,W., Wang,F., Xu,Z., Xie,Z., Lian,Z., Hua,L.,
            Zhou,R., Chen,H. and Wu,B.
  TITLE     Genetic and Phylogenetic Characteristics of Pasteurella multocida
            Isolates From Different Host Species
  JOURNAL   Front Microbiol 9, 1408 (2018)
   PUBMED   29997608
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275427)
  AUTHORS   Peng,Z. and Wu,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2018) College of Veterinary Medicine, Huazhong
            Agricultural University, No. 1 Shizishan Street, Wuhan, Hubei
            430070, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PPVG00000000.1.
            The Pasteurella multocida whole genome shotgun (WGS) project has
            the project accession NZ_PPVG00000000.  This version of the project
            (01) has the accession number NZ_PPVG01000000, and consists of
            sequences PPVG01000001-PPVG01000029.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Prof. Bin Wu lab at Huazhong
            Agricultural University in China.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 604.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013012845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:02:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,151
            CDSs (total)                      :: 2,085
            Genes (coding)                    :: 2,073
            CDSs (with protein)               :: 2,073
            Genes (RNA)                       :: 66
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 3 of 12
            Pseudo Genes (incomplete)         :: 6 of 12
            Pseudo Genes (internal stop)      :: 3 of 12
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275427
                     /organism="Pasteurella multocida"
                     /mol_type="genomic DNA"
                     /strain="HNA01"
                     /isolation_source="Tissue sample"
                     /host="pig"
                     /db_xref="taxon:747"
                     /geo_loc_name="China"
                     /lat_lon="29.01 N 108.21 E"
                     /collection_date="2017-12"
WGS         PPVG01000001-PPVG01000029
WGS_SCAFLD  NZ_PPVG01000001-NZ_PPVG01000029
//
LOCUS       NZ_JBJZRC010000000   3896202 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Morganella morganii strain GK10, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBJZRC000000000
VERSION     NZ_JBJZRC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45903632
            Assembly: GCF_049191065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 3896202)
  AUTHORS   Zhang,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2024) Department of Clinical Laboratory, Weifang
            People's Hospital, 151 Guangwen Street, Weifang 261041, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJZRC000000000.1.
            The Morganella morganii whole genome shotgun (WGS) project has the
            project accession NZ_JBJZRC000000000.  This version of the project
            (01) has the accession number NZ_JBJZRC010000000, and consists of
            sequences JBJZRC010000001-JBJZRC010000041.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049191065.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:06:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,775
            CDSs (total)                      :: 3,694
            Genes (coding)                    :: 3,648
            CDSs (with protein)               :: 3,648
            Genes (RNA)                       :: 81
            rRNAs                             :: 3, 3, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 8 of 46
            Pseudo Genes (incomplete)         :: 40 of 46
            Pseudo Genes (internal stop)      :: 3 of 46
            Pseudo Genes (multiple problems)  :: 5 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3896202
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="GK10"
                     /isolation_source="pus"
                     /host="Homo sapiens"
                     /db_xref="taxon:582"
                     /geo_loc_name="China: Shandong"
                     /lat_lon="36.62 N 119.00 E"
                     /collection_date="2021-10"
                     /collected_by="Cong Zhang"
WGS         JBJZRC010000001-JBJZRC010000041
WGS_SCAFLD  NZ_JBJZRC010000001-NZ_JBJZRC010000041
//
LOCUS       NZ_JBMUQT010000000    915087 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 69LV, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQT000000000
VERSION     NZ_JBMUQT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611081
            Assembly: GCF_049542455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 915087)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 915087)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQT000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQT000000000.  This version of the project
            (01) has the accession number NZ_JBMUQT010000000, and consists of
            sequences JBMUQT010000001-JBMUQT010000067.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 414,61x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:07:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 815
            CDSs (total)                      :: 774
            Genes (coding)                    :: 739
            CDSs (with protein)               :: 739
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 12 of 35
            Pseudo Genes (incomplete)         :: 28 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 7 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915087
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="69LV"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2019"
                     /genotype="ST60"
WGS         JBMUQT010000001-JBMUQT010000067
WGS_SCAFLD  NZ_JBMUQT010000001-NZ_JBMUQT010000067
//
LOCUS       NZ_JBMUQY010000000    916922 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 7F, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQY000000000
VERSION     NZ_JBMUQY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611086
            Assembly: GCF_049542395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 916922)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 916922)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQY000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQY000000000.  This version of the project
            (01) has the accession number NZ_JBMUQY010000000, and consists of
            sequences JBMUQY010000001-JBMUQY010000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 554,4479x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:04:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 823
            CDSs (total)                      :: 782
            Genes (coding)                    :: 746
            CDSs (with protein)               :: 746
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 13 of 36
            Pseudo Genes (incomplete)         :: 29 of 36
            Pseudo Genes (internal stop)      :: 3 of 36
            Pseudo Genes (multiple problems)  :: 8 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916922
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="7F"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2020"
                     /genotype="ST60"
WGS         JBMUQY010000001-JBMUQY010000071
WGS_SCAFLD  NZ_JBMUQY010000001-NZ_JBMUQY010000071
//
LOCUS       NZ_JBMUQM010000000    914527 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 2LV, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQM000000000
VERSION     NZ_JBMUQM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611074
            Assembly: GCF_049542175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 914527)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 914527)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQM000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQM000000000.  This version of the project
            (01) has the accession number NZ_JBMUQM010000000, and consists of
            sequences JBMUQM010000001-JBMUQM010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 492,3051x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:04:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 817
            CDSs (total)                      :: 776
            Genes (coding)                    :: 738
            CDSs (with protein)               :: 738
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 15 of 38
            Pseudo Genes (incomplete)         :: 28 of 38
            Pseudo Genes (internal stop)      :: 1 of 38
            Pseudo Genes (multiple problems)  :: 6 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..914527
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="2LV"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2019"
                     /genotype="ST60"
WGS         JBMUQM010000001-JBMUQM010000063
WGS_SCAFLD  NZ_JBMUQM010000001-NZ_JBMUQM010000063
//
LOCUS       NZ_JBMUQR010000000    906283 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 25LV, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQR000000000
VERSION     NZ_JBMUQR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611079
            Assembly: GCF_049542235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 906283)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 906283)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQR000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQR000000000.  This version of the project
            (01) has the accession number NZ_JBMUQR010000000, and consists of
            sequences JBMUQR010000001-JBMUQR010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 450,1234x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:06:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 806
            CDSs (total)                      :: 765
            Genes (coding)                    :: 730
            CDSs (with protein)               :: 730
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 13 of 35
            Pseudo Genes (incomplete)         :: 27 of 35
            Pseudo Genes (internal stop)      :: 1 of 35
            Pseudo Genes (multiple problems)  :: 6 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..906283
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="25LV"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2019"
                     /genotype="ST60"
WGS         JBMUQR010000001-JBMUQR010000060
WGS_SCAFLD  NZ_JBMUQR010000001-NZ_JBMUQR010000060
//
LOCUS       NZ_JACGET010000000   5101294 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:384, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACGET000000000
VERSION     NZ_JACGET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660271
            Assembly: GCF_016949355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5101294)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5101294)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGET000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGET000000000.  This version of the
            project (01) has the accession number NZ_JACGET010000000, and
            consists of sequences JACGET010000001-JACGET010000077.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 496x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:47:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,583
            CDSs (total)                      :: 4,506
            Genes (coding)                    :: 4,457
            CDSs (with protein)               :: 4,457
            Genes (RNA)                       :: 77
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 14 of 49
            Pseudo Genes (incomplete)         :: 43 of 49
            Pseudo Genes (internal stop)      :: 9 of 49
            Pseudo Genes (multiple problems)  :: 13 of 49
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5101294
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:384"
                     /host="insect"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACGET010000001-JACGET010000077
WGS_SCAFLD  NZ_JACGET010000001-NZ_JACGET010000077
//
LOCUS       NZ_JBMURL010000000    917501 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 8P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURL000000000
VERSION     NZ_JBMURL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611099
            Assembly: GCF_049542295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 917501)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 917501)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURL000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURL000000000.  This version of the project
            (01) has the accession number NZ_JBMURL010000000, and consists of
            sequences JBMURL010000001-JBMURL010000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 358,2062x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:04:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 818
            CDSs (total)                      :: 777
            Genes (coding)                    :: 741
            CDSs (with protein)               :: 741
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 27 of 36
            Pseudo Genes (internal stop)      :: 1 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..917501
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="8P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURL010000001-JBMURL010000062
WGS_SCAFLD  NZ_JBMURL010000001-NZ_JBMURL010000062
//
LOCUS       NZ_JBMUQL010000000    915766 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain FU35, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQL000000000
VERSION     NZ_JBMUQL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611073
            Assembly: GCF_049542555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 915766)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 915766)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQL000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQL000000000.  This version of the project
            (01) has the accession number NZ_JBMUQL010000000, and consists of
            sequences JBMUQL010000001-JBMUQL010000045.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 605,3746x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:06:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 814
            CDSs (total)                      :: 769
            Genes (coding)                    :: 730
            CDSs (with protein)               :: 730
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 16 of 39
            Pseudo Genes (incomplete)         :: 24 of 39
            Pseudo Genes (internal stop)      :: 3 of 39
            Pseudo Genes (multiple problems)  :: 4 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915766
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="FU35"
                     /isolation_source="Bulk tank milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2012"
                     /genotype="ST12"
WGS         JBMUQL010000001-JBMUQL010000045
WGS_SCAFLD  NZ_JBMUQL010000001-NZ_JBMUQL010000045
//
LOCUS       NZ_JBMURV010000000    916677 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 6422N, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURV000000000
VERSION     NZ_JBMURV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611109
            Assembly: GCF_049542715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 916677)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 916677)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURV000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURV000000000.  This version of the project
            (01) has the accession number NZ_JBMURV010000000, and consists of
            sequences JBMURV010000001-JBMURV010000069.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 570,777x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 822
            CDSs (total)                      :: 781
            Genes (coding)                    :: 744
            CDSs (with protein)               :: 744
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 12 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 1 of 37
            Pseudo Genes (multiple problems)  :: 6 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916677
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="6422N"
                     /isolation_source="lung tissue"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURV010000001-JBMURV010000069
WGS_SCAFLD  NZ_JBMURV010000001-NZ_JBMURV010000069
//
LOCUS       NZ_JBMURH010000000    919239 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 4P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURH000000000
VERSION     NZ_JBMURH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611095
            Assembly: GCF_049542215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 919239)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 919239)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURH000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURH000000000.  This version of the project
            (01) has the accession number NZ_JBMURH010000000, and consists of
            sequences JBMURH010000001-JBMURH010000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 556,453x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:07:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 819
            CDSs (total)                      :: 778
            Genes (coding)                    :: 740
            CDSs (with protein)               :: 740
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 14 of 38
            Pseudo Genes (incomplete)         :: 28 of 38
            Pseudo Genes (internal stop)      :: 2 of 38
            Pseudo Genes (multiple problems)  :: 6 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919239
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="4P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURH010000001-JBMURH010000062
WGS_SCAFLD  NZ_JBMURH010000001-NZ_JBMURH010000062
//
LOCUS       NZ_JBMUQN010000000    909147 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 5LV, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQN000000000
VERSION     NZ_JBMUQN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611075
            Assembly: GCF_049542475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 909147)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 909147)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQN000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQN000000000.  This version of the project
            (01) has the accession number NZ_JBMUQN010000000, and consists of
            sequences JBMUQN010000001-JBMUQN010000061.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 498,1724x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 809
            CDSs (total)                      :: 768
            Genes (coding)                    :: 731
            CDSs (with protein)               :: 731
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 12 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 7 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..909147
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="5LV"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2019"
                     /genotype="ST60"
WGS         JBMUQN010000001-JBMUQN010000061
WGS_SCAFLD  NZ_JBMUQN010000001-NZ_JBMUQN010000061
//
LOCUS       NZ_JBMUQW010000000    916966 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 4F, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQW000000000
VERSION     NZ_JBMUQW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611084
            Assembly: GCF_049542375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 916966)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 916966)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQW000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQW000000000.  This version of the project
            (01) has the accession number NZ_JBMUQW010000000, and consists of
            sequences JBMUQW010000001-JBMUQW010000070.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 397,3291x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:08:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 822
            CDSs (total)                      :: 781
            Genes (coding)                    :: 744
            CDSs (with protein)               :: 744
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 14 of 37
            Pseudo Genes (incomplete)         :: 29 of 37
            Pseudo Genes (internal stop)      :: 3 of 37
            Pseudo Genes (multiple problems)  :: 8 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916966
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="4F"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2020"
                     /genotype="ST60"
WGS         JBMUQW010000001-JBMUQW010000070
WGS_SCAFLD  NZ_JBMUQW010000001-NZ_JBMUQW010000070
//
LOCUS       NZ_JBMUQU010000000    916977 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 2F, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMUQU000000000
VERSION     NZ_JBMUQU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611082
            Assembly: GCF_049542675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 916977)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 916977)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMUQU000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMUQU000000000.  This version of the project
            (01) has the accession number NZ_JBMUQU010000000, and consists of
            sequences JBMUQU010000001-JBMUQU010000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 309,3321x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542675.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:07:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 821
            CDSs (total)                      :: 780
            Genes (coding)                    :: 745
            CDSs (with protein)               :: 745
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 13 of 35
            Pseudo Genes (incomplete)         :: 28 of 35
            Pseudo Genes (internal stop)      :: 3 of 35
            Pseudo Genes (multiple problems)  :: 8 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916977
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="2F"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2020"
                     /genotype="ST60"
WGS         JBMUQU010000001-JBMUQU010000071
WGS_SCAFLD  NZ_JBMUQU010000001-NZ_JBMUQU010000071
//
LOCUS       NZ_JACGZY010000000   5065040 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:3649 NAK:55, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JACGZY000000000
VERSION     NZ_JACGZY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660330
            Assembly: GCF_016988595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5065040)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5065040)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGZY000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGZY000000000.  This version of the
            project (01) has the accession number NZ_JACGZY010000000, and
            consists of sequences JACGZY010000001-JACGZY010000247.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. v0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 36x
            Sequencing Technology  :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016988595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:51:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,635
            CDSs (total)                      :: 4,556
            Genes (coding)                    :: 4,483
            CDSs (with protein)               :: 4,483
            Genes (RNA)                       :: 79
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 68
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 19 of 73
            Pseudo Genes (incomplete)         :: 61 of 73
            Pseudo Genes (internal stop)      :: 12 of 73
            Pseudo Genes (multiple problems)  :: 17 of 73
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5065040
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:3649 NAK:55"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /geo_loc_name="Netherlands: Flevoland, Emmeloord"
                     /collection_date="2013"
                     /collected_by="Robert Vreeburg"
WGS         JACGZY010000001-JACGZY010000247
WGS_SCAFLD  NZ_JACGZY010000001-NZ_JACGZY010000247
//
LOCUS       NZ_JBMURI010000000    919288 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 5P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURI000000000
VERSION     NZ_JBMURI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611096
            Assembly: GCF_049542195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 919288)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 919288)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURI000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURI000000000.  This version of the project
            (01) has the accession number NZ_JBMURI010000000, and consists of
            sequences JBMURI010000001-JBMURI010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 475,3842x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:05:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 820
            CDSs (total)                      :: 779
            Genes (coding)                    :: 740
            CDSs (with protein)               :: 740
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 13 of 39
            Pseudo Genes (incomplete)         :: 31 of 39
            Pseudo Genes (internal stop)      :: 1 of 39
            Pseudo Genes (multiple problems)  :: 6 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919288
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="5P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURI010000001-JBMURI010000063
WGS_SCAFLD  NZ_JBMURI010000001-NZ_JBMURI010000063
//
LOCUS       NZ_JBMURM010000000    919221 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 9P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURM000000000
VERSION     NZ_JBMURM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611100
            Assembly: GCF_049543055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 919221)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 919221)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURM000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURM000000000.  This version of the project
            (01) has the accession number NZ_JBMURM010000000, and consists of
            sequences JBMURM010000001-JBMURM010000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 523,2344x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049543055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:11:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 820
            CDSs (total)                      :: 779
            Genes (coding)                    :: 744
            CDSs (with protein)               :: 744
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 11 of 35
            Pseudo Genes (incomplete)         :: 29 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 7 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919221
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="9P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURM010000001-JBMURM010000062
WGS_SCAFLD  NZ_JBMURM010000001-NZ_JBMURM010000062
//
LOCUS       NZ_JBMURG010000000    918613 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 3P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURG000000000
VERSION     NZ_JBMURG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611094
            Assembly: GCF_049542255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 918613)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 918613)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURG000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURG000000000.  This version of the project
            (01) has the accession number NZ_JBMURG010000000, and consists of
            sequences JBMURG010000001-JBMURG010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 564,8724x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:07:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 819
            CDSs (total)                      :: 778
            Genes (coding)                    :: 743
            CDSs (with protein)               :: 743
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 12 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 5 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..918613
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="3P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURG010000001-JBMURG010000063
WGS_SCAFLD  NZ_JBMURG010000001-NZ_JBMURG010000063
//
LOCUS       NZ_JACHAO010000000   5033066 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:243, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACHAO000000000
VERSION     NZ_JACHAO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660300
            Assembly: GCF_016949835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5033066)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5033066)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAO000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAO000000000.  This version of the
            project (01) has the accession number NZ_JACHAO010000000, and
            consists of sequences JACHAO010000001-JACHAO010000172.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 922x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:48:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,511
            CDSs (total)                      :: 4,437
            Genes (coding)                    :: 4,383
            CDSs (with protein)               :: 4,383
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 15 of 54
            Pseudo Genes (incomplete)         :: 47 of 54
            Pseudo Genes (internal stop)      :: 10 of 54
            Pseudo Genes (multiple problems)  :: 14 of 54
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5033066
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:243"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACHAO010000001-JACHAO010000172
WGS_SCAFLD  NZ_JACHAO010000001-NZ_JACHAO010000172
//
LOCUS       NZ_JBMURQ010000000    914588 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain Silo1SurA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMURQ000000000
VERSION     NZ_JBMURQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611104
            Assembly: GCF_049542835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 914588)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 914588)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURQ000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURQ000000000.  This version of the project
            (01) has the accession number NZ_JBMURQ010000000, and consists of
            sequences JBMURQ010000001-JBMURQ010000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 479,9188x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:10:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 820
            CDSs (total)                      :: 779
            Genes (coding)                    :: 743
            CDSs (with protein)               :: 743
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 10 of 36
            Pseudo Genes (incomplete)         :: 31 of 36
            Pseudo Genes (internal stop)      :: 1 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..914588
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="Silo1SurA"
                     /isolation_source="Bulk tank milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2023"
                     /genotype="ST60"
WGS         JBMURQ010000001-JBMURQ010000066
WGS_SCAFLD  NZ_JBMURQ010000001-NZ_JBMURQ010000066
//
LOCUS       NZ_JBMURJ010000000    922710 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 6P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURJ000000000
VERSION     NZ_JBMURJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611097
            Assembly: GCF_049542695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 922710)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 922710)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURJ000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURJ000000000.  This version of the project
            (01) has the accession number NZ_JBMURJ010000000, and consists of
            sequences JBMURJ010000001-JBMURJ010000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 482,0821x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 821
            CDSs (total)                      :: 780
            Genes (coding)                    :: 744
            CDSs (with protein)               :: 744
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 15 of 36
            Pseudo Genes (incomplete)         :: 26 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 7 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..922710
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="6P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURJ010000001-JBMURJ010000062
WGS_SCAFLD  NZ_JBMURJ010000001-NZ_JBMURJ010000062
//
LOCUS       NZ_JBMURK010000000    918902 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 7P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURK000000000
VERSION     NZ_JBMURK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611098
            Assembly: GCF_049542655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 918902)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 918902)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURK000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURK000000000.  This version of the project
            (01) has the accession number NZ_JBMURK010000000, and consists of
            sequences JBMURK010000001-JBMURK010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 452,7407x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 819
            CDSs (total)                      :: 778
            Genes (coding)                    :: 741
            CDSs (with protein)               :: 741
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 15 of 37
            Pseudo Genes (incomplete)         :: 27 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 7 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..918902
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="7P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURK010000001-JBMURK010000060
WGS_SCAFLD  NZ_JBMURK010000001-NZ_JBMURK010000060
//
LOCUS       NZ_JACGFC010000000   5056760 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:4055 NAK:152 GBBC:1819, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JACGFC000000000
VERSION     NZ_JACGFC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660295
            Assembly: GCF_016949995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5056760)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5056760)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGFC000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGFC000000000.  This version of the
            project (01) has the accession number NZ_JACGFC010000000, and
            consists of sequences JACGFC010000001-JACGFC010000250.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1668x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:52:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,593
            CDSs (total)                      :: 4,512
            Genes (coding)                    :: 4,420
            CDSs (with protein)               :: 4,420
            Genes (RNA)                       :: 81
            rRNAs                             :: 3, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 15 of 92
            Pseudo Genes (incomplete)         :: 76 of 92
            Pseudo Genes (internal stop)      :: 28 of 92
            Pseudo Genes (multiple problems)  :: 24 of 92
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5056760
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:4055 NAK:152 GBBC:1819"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /collected_by="Robert Vreeburg"
WGS         JACGFC010000001-JACGFC010000250
WGS_SCAFLD  NZ_JACGFC010000001-NZ_JACGFC010000250
//
LOCUS       NZ_JBMURS010000000    915526 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 3283, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURS000000000
VERSION     NZ_JBMURS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611106
            Assembly: GCF_049542775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 915526)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 915526)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURS000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURS000000000.  This version of the project
            (01) has the accession number NZ_JBMURS010000000, and consists of
            sequences JBMURS010000001-JBMURS010000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 453,9684x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:10:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 819
            CDSs (total)                      :: 778
            Genes (coding)                    :: 741
            CDSs (with protein)               :: 741
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 11 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 2 of 37
            Pseudo Genes (multiple problems)  :: 6 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915526
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="3283"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2023"
                     /genotype="ST60"
WGS         JBMURS010000001-JBMURS010000066
WGS_SCAFLD  NZ_JBMURS010000001-NZ_JBMURS010000066
//
LOCUS       NZ_JBMURP010000000    919375 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 12P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURP000000000
VERSION     NZ_JBMURP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611103
            Assembly: GCF_049542855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 919375)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 919375)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURP000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURP000000000.  This version of the project
            (01) has the accession number NZ_JBMURP010000000, and consists of
            sequences JBMURP010000001-JBMURP010000064.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 335,4686x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542855.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:09:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 821
            CDSs (total)                      :: 780
            Genes (coding)                    :: 745
            CDSs (with protein)               :: 745
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 13 of 35
            Pseudo Genes (incomplete)         :: 26 of 35
            Pseudo Genes (internal stop)      :: 2 of 35
            Pseudo Genes (multiple problems)  :: 6 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919375
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="12P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURP010000001-JBMURP010000064
WGS_SCAFLD  NZ_JBMURP010000001-NZ_JBMURP010000064
//
LOCUS       NZ_JACGEV010000000   5027001 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:3711 NAK:381, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JACGEV000000000
VERSION     NZ_JACGEV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660321
            Assembly: GCF_016949375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5027001)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5027001)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGEV000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGEV000000000.  This version of the
            project (01) has the accession number NZ_JACGEV010000000, and
            consists of sequences JACGEV010000001-JACGEV010000141.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1072x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:49:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,520
            CDSs (total)                      :: 4,441
            Genes (coding)                    :: 4,375
            CDSs (with protein)               :: 4,375
            Genes (RNA)                       :: 79
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 16 of 66
            Pseudo Genes (incomplete)         :: 55 of 66
            Pseudo Genes (internal stop)      :: 14 of 66
            Pseudo Genes (multiple problems)  :: 15 of 66
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5027001
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:3711 NAK:381"
                     /host="Solanum tuberosum"
                     /db_xref="taxon:180957"
                     /collection_date="2013"
                     /collected_by="Robert Vreeburg"
WGS         JACGEV010000001-JACGEV010000141
WGS_SCAFLD  NZ_JACGEV010000001-NZ_JACGEV010000141
//
LOCUS       NZ_JACHAH010000000   5112020 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain IPO:3709 NAK:379 112-1c, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JACHAH000000000
VERSION     NZ_JACHAH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660294
            Assembly: GCF_016949435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5112020)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5112020)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-AUG-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACHAH000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACHAH000000000.  This version of the
            project (01) has the accession number NZ_JACHAH010000000, and
            consists of sequences JACHAH010000001-JACHAH010000113.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 948x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:45:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,597
            CDSs (total)                      :: 4,518
            Genes (coding)                    :: 4,462
            CDSs (with protein)               :: 4,462
            Genes (RNA)                       :: 79
            rRNAs                             :: 4, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 5 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 14 of 56
            Pseudo Genes (incomplete)         :: 50 of 56
            Pseudo Genes (internal stop)      :: 10 of 56
            Pseudo Genes (multiple problems)  :: 14 of 56
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5112020
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="IPO:3709 NAK:379 112-1c"
                     /host="Solanum tuberosum cv Amora"
                     /db_xref="taxon:180957"
                     /geo_loc_name="Netherlands"
                     /collection_date="2013"
                     /collected_by="Robert Vreeburg"
WGS         JACHAH010000001-JACHAH010000113
WGS_SCAFLD  NZ_JACHAH010000001-NZ_JACHAH010000113
//
LOCUS       NZ_JBJZQX010000000   4024807 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Morganella morganii strain GK05, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBJZQX000000000
VERSION     NZ_JBJZQX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN45903627
            Assembly: GCF_049191115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 4024807)
  AUTHORS   Zhang,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-DEC-2024) Department of Clinical Laboratory, Weifang
            People's Hospital, 151 Guangwen Street, Weifang 261041, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBJZQX000000000.1.
            The Morganella morganii whole genome shotgun (WGS) project has the
            project accession NZ_JBJZQX000000000.  This version of the project
            (01) has the accession number NZ_JBJZQX010000000, and consists of
            sequences JBJZQX010000001-JBJZQX010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049191115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:21:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,804
            CDSs (total)                      :: 3,721
            Genes (coding)                    :: 3,678
            CDSs (with protein)               :: 3,678
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 11 of 43
            Pseudo Genes (incomplete)         :: 31 of 43
            Pseudo Genes (internal stop)      :: 11 of 43
            Pseudo Genes (multiple problems)  :: 9 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4024807
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="GK05"
                     /isolation_source="puncture fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:582"
                     /geo_loc_name="China: Shandong"
                     /lat_lon="36.62 N 119.00 E"
                     /collection_date="2019-05"
                     /collected_by="Cong Zhang"
WGS         JBJZQX010000001-JBJZQX010000040
WGS_SCAFLD  NZ_JBJZQX010000001-NZ_JBJZQX010000040
//
LOCUS       NZ_JBMURU010000000    918431 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 7722N, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURU000000000
VERSION     NZ_JBMURU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611108
            Assembly: GCF_049542795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 918431)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 918431)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURU000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURU000000000.  This version of the project
            (01) has the accession number NZ_JBMURU010000000, and consists of
            sequences JBMURU010000001-JBMURU010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 380,1794x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:22:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 820
            CDSs (total)                      :: 779
            Genes (coding)                    :: 743
            CDSs (with protein)               :: 743
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 13 of 36
            Pseudo Genes (incomplete)         :: 29 of 36
            Pseudo Genes (internal stop)      :: 3 of 36
            Pseudo Genes (multiple problems)  :: 8 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..918431
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="7722N"
                     /isolation_source="lung tissue"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURU010000001-JBMURU010000063
WGS_SCAFLD  NZ_JBMURU010000001-NZ_JBMURU010000063
//
LOCUS       NZ_JBMURY010000000    912521 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 17922N, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURY000000000
VERSION     NZ_JBMURY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611112
            Assembly: GCF_049542935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 912521)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 912521)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURY000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURY000000000.  This version of the project
            (01) has the accession number NZ_JBMURY010000000, and consists of
            sequences JBMURY010000001-JBMURY010000061.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 526,7949x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:26:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 812
            CDSs (total)                      :: 772
            Genes (coding)                    :: 736
            CDSs (with protein)               :: 736
            Genes (RNA)                       :: 40
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 14 of 36
            Pseudo Genes (incomplete)         :: 26 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..912521
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="17922N"
                     /isolation_source="lung tissue"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURY010000001-JBMURY010000061
WGS_SCAFLD  NZ_JBMURY010000001-NZ_JBMURY010000061
//
LOCUS       NZ_JBMURN010000000    925492 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Mycoplasmopsis bovis strain 10P, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMURN000000000
VERSION     NZ_JBMURN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47611101
            Assembly: GCF_049542915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Mycoplasmopsis bovis (Mycoplasma bovis)
  ORGANISM  Mycoplasmopsis bovis
            Bacteria; Bacillati; Mycoplasmatota; Mycoplasmoidales;
            Metamycoplasmataceae; Mycoplasmopsis.
REFERENCE   1  (bases 1 to 925492)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Whole-genome sequencing of Chilean isolates of Mycoplasma bovis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 925492)
  AUTHORS   Goddard,M. and Mella,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2025) Instituto de Bioquimica y Microbiologia,
            Universidad Austral de Chile, Independencia, Valdivia 5090000,
            Chile
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMURN000000000.1.
            The Mycoplasmopsis bovis whole genome shotgun (WGS) project has the
            project accession NZ_JBMURN000000000.  This version of the project
            (01) has the accession number NZ_JBMURN010000000, and consists of
            sequences JBMURN010000001-JBMURN010000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 481,3115x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049542915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:20:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 830
            CDSs (total)                      :: 789
            Genes (coding)                    :: 753
            CDSs (with protein)               :: 753
            Genes (RNA)                       :: 41
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 10 of 36
            Pseudo Genes (incomplete)         :: 30 of 36
            Pseudo Genes (internal stop)      :: 2 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..925492
                     /organism="Mycoplasmopsis bovis"
                     /mol_type="genomic DNA"
                     /strain="10P"
                     /isolation_source="milk"
                     /host="Bos taurus"
                     /db_xref="taxon:28903"
                     /geo_loc_name="Chile"
                     /collection_date="2022"
                     /genotype="ST60"
WGS         JBMURN010000001-JBMURN010000066
WGS_SCAFLD  NZ_JBMURN010000001-NZ_JBMURN010000066
//
LOCUS       NZ_CBDFFD010000000   2504759 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Necropsobacter rosorum strain RG01 isolate RG01, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CBDFFD000000000
VERSION     NZ_CBDFFD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA118003764
            Assembly: GCF_965246685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Necropsobacter rosorum
  ORGANISM  Necropsobacter rosorum
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae.
REFERENCE   1  (bases 1 to 2504759)
  CONSRTM   IHU-MI Genome
  TITLE     Direct Submission
  JOURNAL   Submitted (15-APR-2025) IHU - Mediterranee Infection, MEPHI, 19-21
            Boulevard Jean Moulin, 13005 Marseille, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBDFFD000000000.1.
            The Necropsobacter rosorum whole genome shotgun (WGS) project has
            the project accession NZ_CBDFFD000000000.  This version of the
            project (01) has the accession number NZ_CBDFFD010000000, and
            consists of sequences CBDFFD010000001-CBDFFD010000020.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965246685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:28:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,408
            CDSs (total)                      :: 2,339
            Genes (coding)                    :: 2,314
            CDSs (with protein)               :: 2,314
            Genes (RNA)                       :: 69
            rRNAs                             :: 5, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 4, 4 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 2 of 25
            Pseudo Genes (incomplete)         :: 23 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 1 of 25
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504759
                     /organism="Necropsobacter rosorum"
                     /mol_type="genomic DNA"
                     /strain="RG01"
                     /isolate="RG01"
                     /isolation_source="Myocastor coypus"
                     /db_xref="taxon:908285"
                     /geo_loc_name="France"
                     /collection_date="2024"
WGS         CBDFFD010000001-CBDFFD010000020
WGS_SCAFLD  NZ_CBDFFD010000001-NZ_CBDFFD010000020
//
LOCUS       NZ_JALKIX010000000   4968522 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 14-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKIX000000000
VERSION     NZ_JALKIX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527470
            Assembly: GCF_029081025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4968522)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4968522)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKIX000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKIX000000000.  This version of the project
            (01) has the accession number NZ_JALKIX010000000, and consists of
            sequences JALKIX010000001-JALKIX010000059.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029081025.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:46:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,680
            CDSs (total)                      :: 4,603
            Genes (coding)                    :: 4,537
            CDSs (with protein)               :: 4,537
            Genes (RNA)                       :: 77
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 54
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 23 of 66
            Pseudo Genes (incomplete)         :: 48 of 66
            Pseudo Genes (internal stop)      :: 19 of 66
            Pseudo Genes (multiple problems)  :: 18 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4968522
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="14-2"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Lyons, GA"
                     /collection_date="2014"
WGS         JALKIX010000001-JALKIX010000059
WGS_SCAFLD  NZ_JALKIX010000001-NZ_JALKIX010000059
//
LOCUS       NZ_JALKLS010000000   5080319 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 97-11, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKLS000000000
VERSION     NZ_JALKLS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527384
            Assembly: GCF_029086775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5080319)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5080319)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKLS000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKLS000000000.  This version of the project
            (01) has the accession number NZ_JALKLS010000000, and consists of
            sequences JALKLS010000001-JALKLS010000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:56:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,774
            CDSs (total)                      :: 4,677
            Genes (coding)                    :: 4,609
            CDSs (with protein)               :: 4,609
            Genes (RNA)                       :: 97
            rRNAs                             :: 2, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 27 of 68
            Pseudo Genes (incomplete)         :: 46 of 68
            Pseudo Genes (internal stop)      :: 24 of 68
            Pseudo Genes (multiple problems)  :: 26 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080319
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="97-11"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Toombs Co. GA"
                     /collection_date="1997"
WGS         JALKLS010000001-JALKLS010000039
WGS_SCAFLD  NZ_JALKLS010000001-NZ_JALKLS010000039
//
LOCUS       NZ_JALKKN010000000   4790946 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 200-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKKN000000000
VERSION     NZ_JALKKN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527420
            Assembly: GCF_029081725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4790946)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4790946)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKKN000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKKN000000000.  This version of the project
            (01) has the accession number NZ_JALKKN010000000, and consists of
            sequences JALKKN010000001-JALKKN010000050.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029081725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:57:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,454
            CDSs (total)                      :: 4,374
            Genes (coding)                    :: 4,309
            CDSs (with protein)               :: 4,309
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 28 of 65
            Pseudo Genes (incomplete)         :: 47 of 65
            Pseudo Genes (internal stop)      :: 15 of 65
            Pseudo Genes (multiple problems)  :: 23 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4790946
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="200-2"
                     /host="Portulaca sp."
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Reidsville, GA"
                     /collection_date="2000"
WGS         JALKKN010000001-JALKKN010000050
WGS_SCAFLD  NZ_JALKKN010000001-NZ_JALKKN010000050
//
LOCUS       NZ_JALKJL010000000   4951847 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 99-22, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKJL000000000
VERSION     NZ_JALKJL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527451
            Assembly: GCF_029081175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4951847)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4951847)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKJL000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKJL000000000.  This version of the project
            (01) has the accession number NZ_JALKJL010000000, and consists of
            sequences JALKJL010000001-JALKJL010000044.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029081175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:52:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,609
            CDSs (total)                      :: 4,537
            Genes (coding)                    :: 4,468
            CDSs (with protein)               :: 4,468
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 53
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 31 of 69
            Pseudo Genes (incomplete)         :: 46 of 69
            Pseudo Genes (internal stop)      :: 17 of 69
            Pseudo Genes (multiple problems)  :: 21 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4951847
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="99-22"
                     /host="Digitaria sp."
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tift Co. GA"
                     /collection_date="1999"
WGS         JALKJL010000001-JALKJL010000044
WGS_SCAFLD  NZ_JALKJL010000001-NZ_JALKJL010000044
//
LOCUS       NZ_JALKJJ010000000   4997812 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 99-18, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKJJ000000000
VERSION     NZ_JALKJJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527454
            Assembly: GCF_029081105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4997812)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4997812)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKJJ000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKJJ000000000.  This version of the project
            (01) has the accession number NZ_JALKJJ010000000, and consists of
            sequences JALKJJ010000001-JALKJJ010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029081105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:54:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,666
            CDSs (total)                      :: 4,582
            Genes (coding)                    :: 4,512
            CDSs (with protein)               :: 4,512
            Genes (RNA)                       :: 84
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 66
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 27 of 70
            Pseudo Genes (incomplete)         :: 46 of 70
            Pseudo Genes (internal stop)      :: 16 of 70
            Pseudo Genes (multiple problems)  :: 16 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4997812
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="99-18"
                     /host="Richardia scabra L."
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tift Co. GA"
                     /collection_date="1999"
WGS         JALKJJ010000001-JALKJJ010000063
WGS_SCAFLD  NZ_JALKJJ010000001-NZ_JALKJJ010000063
//
LOCUS       NZ_JALKKK010000000   4988952 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 19-13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKKK000000000
VERSION     NZ_JALKKK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527425
            Assembly: GCF_029081665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4988952)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4988952)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKKK000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKKK000000000.  This version of the project
            (01) has the accession number NZ_JALKKK010000000, and consists of
            sequences JALKKK010000001-JALKKK010000055.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029081665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:52:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,688
            CDSs (total)                      :: 4,599
            Genes (coding)                    :: 4,530
            CDSs (with protein)               :: 4,530
            Genes (RNA)                       :: 89
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 30 of 69
            Pseudo Genes (incomplete)         :: 43 of 69
            Pseudo Genes (internal stop)      :: 17 of 69
            Pseudo Genes (multiple problems)  :: 19 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4988952
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="19-13"
                     /host="Verbena bonariensis"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tift Co. GA"
                     /collection_date="2019"
WGS         JALKKK010000001-JALKKK010000055
WGS_SCAFLD  NZ_JALKKK010000001-NZ_JALKKK010000055
//
LOCUS       NZ_JALKKY010000000   4944989 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 97-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKKY000000000
VERSION     NZ_JALKKY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527404
            Assembly: GCF_029086445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4944989)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4944989)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKKY000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKKY000000000.  This version of the project
            (01) has the accession number NZ_JALKKY010000000, and consists of
            sequences JALKKY010000001-JALKKY010000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:03:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,601
            CDSs (total)                      :: 4,528
            Genes (coding)                    :: 4,459
            CDSs (with protein)               :: 4,459
            Genes (RNA)                       :: 73
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 54
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 25 of 69
            Pseudo Genes (incomplete)         :: 50 of 69
            Pseudo Genes (internal stop)      :: 24 of 69
            Pseudo Genes (multiple problems)  :: 27 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4944989
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="97-3"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Toombs Co. GA"
                     /collection_date="1997"
WGS         JALKKY010000001-JALKKY010000039
WGS_SCAFLD  NZ_JALKKY010000001-NZ_JALKKY010000039
//
LOCUS       NZ_JALKLQ010000000   5082593 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 2-6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKLQ000000000
VERSION     NZ_JALKLQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527386
            Assembly: GCF_029086725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5082593)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5082593)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKLQ000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKLQ000000000.  This version of the project
            (01) has the accession number NZ_JALKLQ010000000, and consists of
            sequences JALKLQ010000001-JALKLQ010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:01:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,749
            CDSs (total)                      :: 4,671
            Genes (coding)                    :: 4,600
            CDSs (with protein)               :: 4,600
            Genes (RNA)                       :: 78
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 25 of 72
            Pseudo Genes (incomplete)         :: 49 of 72
            Pseudo Genes (internal stop)      :: 26 of 72
            Pseudo Genes (multiple problems)  :: 25 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5082593
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="2-6"
                     /isolation_source="peanut blossom"
                     /host="thrips"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tift Co. GA"
                     /collection_date="2002"
WGS         JALKLQ010000001-JALKLQ010000040
WGS_SCAFLD  NZ_JALKLQ010000001-NZ_JALKLQ010000040
//
LOCUS       NZ_JALKIU010000000   4901563 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 4-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKIU000000000
VERSION     NZ_JALKIU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527473
            Assembly: GCF_029086145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4901563)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4901563)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKIU000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKIU000000000.  This version of the project
            (01) has the accession number NZ_JALKIU010000000, and consists of
            sequences JALKIU010000001-JALKIU010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086145.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:01:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,543
            CDSs (total)                      :: 4,472
            Genes (coding)                    :: 4,400
            CDSs (with protein)               :: 4,400
            Genes (RNA)                       :: 71
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3, 2 (5S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 32 of 72
            Pseudo Genes (incomplete)         :: 46 of 72
            Pseudo Genes (internal stop)      :: 16 of 72
            Pseudo Genes (multiple problems)  :: 19 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4901563
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="4-2"
                     /isolation_source="peanut"
                     /host="thrips"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tift Co. GA"
                     /collection_date="2004"
WGS         JALKIU010000001-JALKIU010000047
WGS_SCAFLD  NZ_JALKIU010000001-NZ_JALKIU010000047
//
LOCUS       NZ_JALKKA010000000   4961112 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 92-7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKKA000000000
VERSION     NZ_JALKKA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527436
            Assembly: GCF_029081455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4961112)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4961112)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKKA000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKKA000000000.  This version of the project
            (01) has the accession number NZ_JALKKA010000000, and consists of
            sequences JALKKA010000001-JALKKA010000045.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029081455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:54:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,629
            CDSs (total)                      :: 4,552
            Genes (coding)                    :: 4,480
            CDSs (with protein)               :: 4,480
            Genes (RNA)                       :: 77
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 26 of 72
            Pseudo Genes (incomplete)         :: 47 of 72
            Pseudo Genes (internal stop)      :: 26 of 72
            Pseudo Genes (multiple problems)  :: 25 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4961112
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="92-7"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Vidalia Region GA"
                     /collection_date="1992"
WGS         JALKKA010000001-JALKKA010000045
WGS_SCAFLD  NZ_JALKKA010000001-NZ_JALKKA010000045
//
LOCUS       NZ_JALKLM010000000   5048213 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 05-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKLM000000000
VERSION     NZ_JALKLM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527390
            Assembly: GCF_029169365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5048213)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5048213)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKLM000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKLM000000000.  This version of the project
            (01) has the accession number NZ_JALKLM010000000, and consists of
            sequences JALKLM010000001-JALKLM010000059.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029169365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:03:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,715
            CDSs (total)                      :: 4,634
            Genes (coding)                    :: 4,559
            CDSs (with protein)               :: 4,559
            Genes (RNA)                       :: 81
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 57
            ncRNAs                            :: 18
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 32 of 75
            Pseudo Genes (incomplete)         :: 54 of 75
            Pseudo Genes (internal stop)      :: 27 of 75
            Pseudo Genes (multiple problems)  :: 33 of 75
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5048213
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="05-1"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Vidalia Region, GA"
                     /collection_date="2005"
WGS         JALKLM010000001-JALKLM010000059
WGS_SCAFLD  NZ_JALKLM010000001-NZ_JALKLM010000059
//
LOCUS       NZ_JALKKX010000000   5063507 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 98-7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKKX000000000
VERSION     NZ_JALKKX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527405
            Assembly: GCF_029086425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5063507)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5063507)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKKX000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKKX000000000.  This version of the project
            (01) has the accession number NZ_JALKKX010000000, and consists of
            sequences JALKKX010000001-JALKKX010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:06:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,716
            CDSs (total)                      :: 4,640
            Genes (coding)                    :: 4,572
            CDSs (with protein)               :: 4,572
            Genes (RNA)                       :: 76
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 56
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 33 of 68
            Pseudo Genes (incomplete)         :: 41 of 68
            Pseudo Genes (internal stop)      :: 19 of 68
            Pseudo Genes (multiple problems)  :: 21 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5063507
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="98-7"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tift Co. GA"
                     /collection_date="1998"
WGS         JALKKX010000001-JALKKX010000040
WGS_SCAFLD  NZ_JALKKX010000001-NZ_JALKKX010000040
//
LOCUS       NZ_JALKLW010000000   5045896 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 99-7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKLW000000000
VERSION     NZ_JALKLW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527380
            Assembly: GCF_029086845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5045896)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5045896)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKLW000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKLW000000000.  This version of the project
            (01) has the accession number NZ_JALKLW010000000, and consists of
            sequences JALKLW010000001-JALKLW010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:08:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,720
            CDSs (total)                      :: 4,643
            Genes (coding)                    :: 4,575
            CDSs (with protein)               :: 4,575
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 54
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 26 of 68
            Pseudo Genes (incomplete)         :: 47 of 68
            Pseudo Genes (internal stop)      :: 25 of 68
            Pseudo Genes (multiple problems)  :: 27 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5045896
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="99-7"
                     /isolation_source="leaf"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tattnall Co. GA"
                     /collection_date="1999"
WGS         JALKLW010000001-JALKLW010000043
WGS_SCAFLD  NZ_JALKLW010000001-NZ_JALKLW010000043
//
LOCUS       NZ_JALKMC010000000   4917318 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 15-3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKMC000000000
VERSION     NZ_JALKMC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527373
            Assembly: GCF_029086965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4917318)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4917318)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKMC000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKMC000000000.  This version of the project
            (01) has the accession number NZ_JALKMC010000000, and consists of
            sequences JALKMC010000001-JALKMC010000041.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:04:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,600
            CDSs (total)                      :: 4,517
            Genes (coding)                    :: 4,448
            CDSs (with protein)               :: 4,448
            Genes (RNA)                       :: 83
            rRNAs                             :: 3, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 36 of 69
            Pseudo Genes (incomplete)         :: 44 of 69
            Pseudo Genes (internal stop)      :: 21 of 69
            Pseudo Genes (multiple problems)  :: 28 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4917318
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="15-3"
                     /host="onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Tattnall Co. GA"
                     /collection_date="2015"
WGS         JALKMC010000001-JALKMC010000041
WGS_SCAFLD  NZ_JALKMC010000001-NZ_JALKMC010000041
//
LOCUS       NZ_JALKKG010000000   5079981 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 99-6, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKKG000000000
VERSION     NZ_JALKKG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527430
            Assembly: GCF_029081615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5079981)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5079981)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKKG000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKKG000000000.  This version of the project
            (01) has the accession number NZ_JALKKG010000000, and consists of
            sequences JALKKG010000001-JALKKG010000044.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029081615.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:07:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,768
            CDSs (total)                      :: 4,691
            Genes (coding)                    :: 4,621
            CDSs (with protein)               :: 4,621
            Genes (RNA)                       :: 77
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 55
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 26 of 70
            Pseudo Genes (incomplete)         :: 49 of 70
            Pseudo Genes (internal stop)      :: 26 of 70
            Pseudo Genes (multiple problems)  :: 27 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5079981
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="99-6"
                     /isolation_source="leaf"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Toombs Co. GA"
                     /collection_date="1999"
WGS         JALKKG010000001-JALKKG010000044
WGS_SCAFLD  NZ_JALKKG010000001-NZ_JALKKG010000044
//
LOCUS       NZ_JALKKT010000000   4906502 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea ananatis strain 07-14, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALKKT000000000
VERSION     NZ_JALKKT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27527409
            Assembly: GCF_029086405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea ananatis
  ORGANISM  Pantoea ananatis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 4906502)
  AUTHORS   Myers,B.K., Shin,G.Y., Agarwal,G., Stice,S.P., Gitaitis,R.D.,
            Kvitko,B.H. and Dutta,B.
  TITLE     Genome-wide association and dissociation studies in Pantoea
            ananatis reveal potential virulence factors affecting Allium porrum
            and Allium fistulosum x Allium cepa hybrid
  JOURNAL   Front Microbiol 13, 1094155 (2023)
   PUBMED   36817114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4906502)
  AUTHORS   Myers,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2022) Plant Pathology, University of Georgia,
            2806 Rebecca Rd, Tifton, GA 31794, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALKKT000000000.1.
            The Pantoea ananatis whole genome shotgun (WGS) project has the
            project accession NZ_JALKKT000000000.  This version of the project
            (01) has the accession number NZ_JALKKT010000000, and consists of
            sequences JALKKT010000001-JALKKT010000045.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 10-20x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029086405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:06:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,557
            CDSs (total)                      :: 4,485
            Genes (coding)                    :: 4,413
            CDSs (with protein)               :: 4,413
            Genes (RNA)                       :: 72
            rRNAs                             :: 3, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 31 of 72
            Pseudo Genes (incomplete)         :: 46 of 72
            Pseudo Genes (internal stop)      :: 17 of 72
            Pseudo Genes (multiple problems)  :: 19 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4906502
                     /organism="Pantoea ananatis"
                     /mol_type="genomic DNA"
                     /strain="07-14"
                     /host="Onion"
                     /db_xref="taxon:553"
                     /geo_loc_name="USA: Toombs Co. GA"
                     /collection_date="2007"
WGS         JALKKT010000001-JALKKT010000045
WGS_SCAFLD  NZ_JALKKT010000001-NZ_JALKKT010000045
//
LOCUS       NZ_JBRAZS010000000   5007404 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pantoea dispersa strain SD811, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBRAZS000000000
VERSION     NZ_JBRAZS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50480398
            Assembly: GCF_056780175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pantoea dispersa
  ORGANISM  Pantoea dispersa
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Erwiniaceae; Pantoea.
REFERENCE   1  (bases 1 to 5007404)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Tso,F., Ford,N.E.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5007404)
  AUTHORS   Garrell,A.-K., Swift,J.F., Pal,G., Pestalozzi,C., Castrillo,G.,
            Schlaeppi,K., Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRAZS000000000.1.
            The Pantoea dispersa whole genome shotgun (WGS) project has the
            project accession NZ_JBRAZS000000000.  This version of the project
            (01) has the accession number NZ_JBRAZS010000000, and consists of
            sequences JBRAZS010000001-JBRAZS010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 107x
            Sequencing Technology  :: Oxford Nanopore Technology
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:13:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,712
            CDSs (total)                      :: 4,602
            Genes (coding)                    :: 4,559
            CDSs (with protein)               :: 4,559
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 21 of 43
            Pseudo Genes (incomplete)         :: 27 of 43
            Pseudo Genes (internal stop)      :: 10 of 43
            Pseudo Genes (multiple problems)  :: 13 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5007404
                     /organism="Pantoea dispersa"
                     /mol_type="genomic DNA"
                     /strain="SD811"
                     /db_xref="taxon:59814"
                     /geo_loc_name="Cape Verde"
                     /lat_lon="15.028 N 23.563 W"
WGS         JBRAZS010000001-JBRAZS010000003
WGS_SCAFLD  NZ_JBRAZS010000001-NZ_JBRAZS010000003
//
LOCUS       NZ_JBQUVI010000000   4646565 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Nitratireductor sp. J20-h4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBQUVI000000000
VERSION     NZ_JBQUVI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50771689
            Assembly: GCF_056780505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Nitratireductor sp. J20-h4
  ORGANISM  Nitratireductor sp. J20-h4
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Phyllobacteriaceae; Nitratireductor.
REFERENCE   1  (bases 1 to 4646565)
  AUTHORS   Lee,J.K., Kim,J.M., Choi,B.J. and Jeon,C.O.
  TITLE     Nitratireductor sp. nov., isolated from Marine Algae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4646565)
  AUTHORS   Lee,J.K., Kim,J.M., Choi,B.J. and Jeon,C.O.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2025) life science, Chung-Ang university, 84,
            Heukseok-ro, Dongjak-gu, Seoul 06974, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBQUVI000000000.1.
            The Nitratireductor sp. J20-h4 whole genome shotgun (WGS) project
            has the project accession NZ_JBQUVI000000000.  This version of the
            project (01) has the accession number NZ_JBQUVI010000000, and
            consists of sequences JBQUVI010000001-JBQUVI010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 23-AUG-2025
            Assembly Method        :: flye v. 2.9.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53.0x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780505.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:26:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,483
            CDSs (total)                      :: 4,426
            Genes (coding)                    :: 4,373
            CDSs (with protein)               :: 4,373
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 23 of 53
            Pseudo Genes (incomplete)         :: 39 of 53
            Pseudo Genes (internal stop)      :: 8 of 53
            Pseudo Genes (multiple problems)  :: 15 of 53
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4646565
                     /organism="Nitratireductor sp. J20-h4"
                     /mol_type="genomic DNA"
                     /strain="J20-h4"
                     /host="Marine algae"
                     /db_xref="taxon:3458247"
                     /geo_loc_name="South Korea: Goseong-gun, Gangwon-do"
                     /collection_date="2021-07"
WGS         JBQUVI010000001-JBQUVI010000003
WGS_SCAFLD  NZ_CM165557
WGS_SCAFLD  NZ_JBQUVI010000001
WGS_SCAFLD  NZ_JBQUVI010000003
//
LOCUS       NZ_JBKUSK010000000   2299722 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate 20-2_60, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBKUSK000000000
VERSION     NZ_JBKUSK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43246170
            Sequence Read Archive: SRR31671879
            Assembly: GCF_046961315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2299722)
  AUTHORS   Sawhney,S., Thaenert,R., Thaenert,A., Hall-Moore,C., Ndao,M.,
            Mahmud,B., Warner,B., Tarr,P. and Dantas,G.
  TITLE     The role of early feeding patterns on microbiome development and
            strain persistence, sharing, and in-host adaptation, from infancy
            to middle childhood
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2299722)
  AUTHORS   Sawhney,S., Thaenert,R., Thaenert,A., Hall-Moore,C., Ndao,M.,
            Mahmud,B., Warner,B., Tarr,P. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2024) Center for Genome Sciences, Washington
            University in Saint Louis, 4515 McKinley Ave, Saint Louis, MO
            63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKUSK000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_JBKUSK000000000.  This version of the
            project (01) has the accession number NZ_JBKUSK010000000, and
            consists of sequences JBKUSK010000001-JBKUSK010000124.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 21.509631007999875x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_046961315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:17:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,031
            CDSs (total)                      :: 1,992
            Genes (coding)                    :: 1,979
            CDSs (with protein)               :: 1,979
            Genes (RNA)                       :: 39
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 0 of 13
            Pseudo Genes (incomplete)         :: 11 of 13
            Pseudo Genes (internal stop)      :: 2 of 13
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299722
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="20-2_60"
                     /isolation_source="infant stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="USA: Saint Louis"
                     /lat_lon="38.6270 N 90.1994 W"
                     /collection_date="2014-03-10"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         JBKUSK010000001-JBKUSK010000124
WGS_SCAFLD  NZ_JBKUSK010000001-NZ_JBKUSK010000124
//
LOCUS       NZ_JAXYQA010000000   2305770 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate P051L1-38, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXYQA000000000
VERSION     NZ_JAXYQA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37829302
            Assembly: GCF_037378645.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2305770)
  AUTHORS   Huang,K.D., Amend,L., Galvez,E.J.C., Lesker,T.R., de Oliveira,R.,
            Bielecka,A., Blanco-Miguez,A., Valles-Colomer,M., Ruf,I.,
            Pasolli,E., Buer,J., Segata,N., Esser,S., Strowig,T. and
            Kehrmann,J.
  TITLE     Establishment of a non-Westernized gut microbiota in men who have
            sex with men is associated with sexual practices
  JOURNAL   Cell Rep Med 5 (3), 101426 (2024)
   PUBMED   38366600
REFERENCE   2  (bases 1 to 2305770)
  AUTHORS   Huang,K.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2023) MIKI, Helmholtz Centre for Infection
            Research, 7 Inhoffenstrasse, Brunswick, Lower-Saxony 38124, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXYQA000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_JAXYQA000000000.  This version of the
            project (01) has the accession number NZ_JAXYQA010000000, and
            consists of sequences JAXYQA010000001-JAXYQA010000149.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-OCT-2021
            Assembly Method        :: metaWRAP v. 1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037378645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:22:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,013
            CDSs (total)                      :: 1,975
            Genes (coding)                    :: 1,963
            CDSs (with protein)               :: 1,963
            Genes (RNA)                       :: 38
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 0 of 12
            Pseudo Genes (incomplete)         :: 12 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305770
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="P051L1-38"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Germany: Essen"
                     /lat_lon="51.4361 N 6.9895 E"
                     /collection_date="2016-11-14"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         JAXYQA010000001-JAXYQA010000149
WGS_SCAFLD  NZ_JAXYQA010000001-NZ_JAXYQA010000149
//
LOCUS       NZ_JAYAWX010000000   2175367 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate P024-50, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAYAWX000000000
VERSION     NZ_JAYAWX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37826533
            Assembly: GCF_037271995.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2175367)
  AUTHORS   Huang,K.D., Amend,L., Galvez,E.J.C., Lesker,T.R., de Oliveira,R.,
            Bielecka,A., Blanco-Miguez,A., Valles-Colomer,M., Ruf,I.,
            Pasolli,E., Buer,J., Segata,N., Esser,S., Strowig,T. and
            Kehrmann,J.
  TITLE     Establishment of a non-Westernized gut microbiota in men who have
            sex with men is associated with sexual practices
  JOURNAL   Cell Rep Med 5 (3), 101426 (2024)
   PUBMED   38366600
REFERENCE   2  (bases 1 to 2175367)
  AUTHORS   Huang,K.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2023) MIKI, Helmholtz Centre for Infection
            Research, 7 Inhoffenstrasse, Brunswick, Lower-Saxony 38124, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAYAWX000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_JAYAWX000000000.  This version of the
            project (01) has the accession number NZ_JAYAWX010000000, and
            consists of sequences JAYAWX010000001-JAYAWX010000508.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-OCT-2021
            Assembly Method        :: metaWRAP v. 1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 8x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037271995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:16:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,022
            CDSs (total)                      :: 2,002
            Genes (coding)                    :: 1,967
            CDSs (with protein)               :: 1,967
            Genes (RNA)                       :: 20
            tRNAs                             :: 16
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 0 of 35
            Pseudo Genes (incomplete)         :: 34 of 35
            Pseudo Genes (internal stop)      :: 1 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175367
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="P024-50"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Germany: Essen"
                     /lat_lon="51.4361 N 6.9895 E"
                     /collection_date="2019-07-09"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         JAYAWX010000001-JAYAWX010000508
WGS_SCAFLD  NZ_JAYAWX010000001-NZ_JAYAWX010000508
//
LOCUS       NZ_CDWMCG010000000   2278992 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate SRR6915170_bin_14837, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CDWMCG000000000
VERSION     NZ_CDWMCG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120791366
            Sequence Read Archive: SRR6915170
            Assembly: GCF_977893365.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2278992)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2025) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDWMCG000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CDWMCG000000000.  This version of the
            project (01) has the accession number NZ_CDWMCG010000000, and
            consists of sequences CDWMCG010000001-CDWMCG010000298.
            This is a Third Party Annotation (TPA) bin derived from the primary
            whole genome shotgun (WGS) data set SRP136711. This sample
            represents a Metagenome-Assembled Genome (MAG) from the metagenomic
            run SRR6915170.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977893365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:18:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,034
            CDSs (total)                      :: 1,994
            Genes (coding)                    :: 1,973
            CDSs (with protein)               :: 1,973
            Genes (RNA)                       :: 40
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 1 of 21
            Pseudo Genes (incomplete)         :: 20 of 21
            Pseudo Genes (internal stop)      :: 0 of 21
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2278992
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="SRR6915170_bin_14837"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Italy"
                     /collection_date="2016-01-11"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CDWMCG010000001-CDWMCG010000298
WGS_SCAFLD  NZ_CDWMCG010000001-NZ_CDWMCG010000298
//
LOCUS       NZ_DBFDZY010000000   2318434 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate MAG6716, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DBFDZY000000000
VERSION     NZ_DBFDZY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46331737
            Sequence Read Archive: SRR13068827
            Assembly: GCF_048319355.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2318434)
  AUTHORS   Olekhnovich,E.I. and Kanaeva,V.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2025) genomic research and computational biology
            lab, Federal Research and Clinical Centre of Physical-Chemical
            Medicine, Malaya Pirogovskaya, Moscow 119160, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DBFDZY000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_DBFDZY000000000.  This version of the
            project (01) has the accession number NZ_DBFDZY010000000, and
            consists of sequences DBFDZY010000001-DBFDZY010000157.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048319355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:19:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,023
            CDSs (total)                      :: 1,975
            Genes (coding)                    :: 1,959
            CDSs (with protein)               :: 1,959
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 42
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 2 of 16
            Pseudo Genes (incomplete)         :: 14 of 16
            Pseudo Genes (internal stop)      :: 0 of 16
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318434
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="MAG6716"
                     /isolation_source="gut"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Israel"
                     /lat_lon="32.0467 N 34.8429 E"
                     /collection_date="2018-06/2019-06"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         DBFDZY010000001-DBFDZY010000157
WGS_SCAFLD  NZ_DBFDZY010000001-NZ_DBFDZY010000157
//
LOCUS       NZ_UTLA01000000      5984610 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p1.F5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTLA00000000
VERSION     NZ_UTLA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472058
            Assembly: GCF_900583245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTLA00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTLA00000000.  This version of the project
            (01) has the accession number NZ_UTLA01000000, and consists of
            sequences UTLA01000001-UTLA01000056.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900583245.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:28:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,368
            CDSs (total)                      :: 5,294
            Genes (coding)                    :: 5,212
            CDSs (with protein)               :: 5,212
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 13 of 82
            Pseudo Genes (incomplete)         :: 65 of 82
            Pseudo Genes (internal stop)      :: 11 of 82
            Pseudo Genes (multiple problems)  :: 7 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5984610
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p1.F5"
                     /db_xref="taxon:33069"
WGS         UTLA01000001-UTLA01000056
WGS_SCAFLD  NZ_UTLA01000001-NZ_UTLA01000056
//
LOCUS       NZ_UTUG01000000      5960412 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.H2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTUG00000000
VERSION     NZ_UTUG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472301
            Assembly: GCF_900585645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTUG00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTUG00000000.  This version of the project
            (01) has the accession number NZ_UTUG01000000, and consists of
            sequences UTUG01000001-UTUG01000043.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585645.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:33:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,390
            CDSs (total)                      :: 5,315
            Genes (coding)                    :: 5,235
            CDSs (with protein)               :: 5,235
            Genes (RNA)                       :: 75
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 14 of 80
            Pseudo Genes (incomplete)         :: 62 of 80
            Pseudo Genes (internal stop)      :: 14 of 80
            Pseudo Genes (multiple problems)  :: 10 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5960412
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.H2"
                     /db_xref="taxon:33069"
WGS         UTUG01000001-UTUG01000043
WGS_SCAFLD  NZ_UTUG01000001-NZ_UTUG01000043
//
LOCUS       NZ_UTSH01000000      5986365 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p21.H3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTSH00000000
VERSION     NZ_UTSH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472248
            Assembly: GCF_900585115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTSH00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTSH00000000.  This version of the project
            (01) has the accession number NZ_UTSH01000000, and consists of
            sequences UTSH01000001-UTSH01000056.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:35:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,369
            CDSs (total)                      :: 5,295
            Genes (coding)                    :: 5,215
            CDSs (with protein)               :: 5,215
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 13 of 80
            Pseudo Genes (incomplete)         :: 63 of 80
            Pseudo Genes (internal stop)      :: 12 of 80
            Pseudo Genes (multiple problems)  :: 8 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5986365
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p21.H3"
                     /db_xref="taxon:33069"
WGS         UTSH01000001-UTSH01000056
WGS_SCAFLD  NZ_UTSH01000001-NZ_UTSH01000056
//
LOCUS       NZ_UUID01000000      5919918 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p2.B9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUID00000000
VERSION     NZ_UUID00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472661
            Assembly: GCF_900589225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUID00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUID00000000.  This version of the project
            (01) has the accession number NZ_UUID01000000, and consists of
            sequences UUID01000001-UUID01000037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900589225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:34:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,312
            CDSs (total)                      :: 5,239
            Genes (coding)                    :: 5,158
            CDSs (with protein)               :: 5,158
            Genes (RNA)                       :: 73
            rRNAs                             :: 6, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 15 of 81
            Pseudo Genes (incomplete)         :: 69 of 81
            Pseudo Genes (internal stop)      :: 8 of 81
            Pseudo Genes (multiple problems)  :: 11 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5919918
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p2.B9"
                     /db_xref="taxon:33069"
WGS         UUID01000001-UUID01000037
WGS_SCAFLD  NZ_UUID01000001-NZ_UUID01000037
//
LOCUS       NZ_JVFU01000000      3922742 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain 47_PMIR, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JVFU00000000
VERSION     NZ_JVFU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197664
            Assembly: GCF_001065085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 3922742)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3922742)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVFU00000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JVFU00000000.  This version of the project
            (01) has the accession number NZ_JVFU01000000, and consists of
            sequences JVFU01000001-JVFU01000085.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 10x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001065085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:35:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,600
            CDSs (total)                      :: 3,528
            Genes (coding)                    :: 3,470
            CDSs (with protein)               :: 3,470
            Genes (RNA)                       :: 72
            rRNAs                             :: 3, 1, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 6 (23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 14 of 58
            Pseudo Genes (incomplete)         :: 43 of 58
            Pseudo Genes (internal stop)      :: 12 of 58
            Pseudo Genes (multiple problems)  :: 9 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3922742
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="47_PMIR"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVFU01000001-JVFU01000085
WGS_SCAFLD  NZ_JVFU01000001-NZ_JVFU01000085
//
LOCUS       NZ_UTUP01000000      5983980 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.H4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTUP00000000
VERSION     NZ_UTUP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472303
            Assembly: GCF_900585695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTUP00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTUP00000000.  This version of the project
            (01) has the accession number NZ_UTUP01000000, and consists of
            sequences UTUP01000001-UTUP01000046.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:36:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,367
            CDSs (total)                      :: 5,293
            Genes (coding)                    :: 5,209
            CDSs (with protein)               :: 5,209
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 13 of 84
            Pseudo Genes (incomplete)         :: 66 of 84
            Pseudo Genes (internal stop)      :: 12 of 84
            Pseudo Genes (multiple problems)  :: 7 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983980
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.H4"
                     /db_xref="taxon:33069"
WGS         UTUP01000001-UTUP01000046
WGS_SCAFLD  NZ_UTUP01000001-NZ_UTUP01000046
//
LOCUS       NZ_UULP01000000      5920187 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p3.C4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UULP00000000
VERSION     NZ_UULP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472750
            Assembly: GCF_900590135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UULP00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UULP00000000.  This version of the project
            (01) has the accession number NZ_UULP01000000, and consists of
            sequences UULP01000001-UULP01000032.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900590135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:38:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,317
            CDSs (total)                      :: 5,243
            Genes (coding)                    :: 5,163
            CDSs (with protein)               :: 5,163
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 13 of 80
            Pseudo Genes (incomplete)         :: 70 of 80
            Pseudo Genes (internal stop)      :: 8 of 80
            Pseudo Genes (multiple problems)  :: 11 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5920187
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p3.C4"
                     /db_xref="taxon:33069"
WGS         UULP01000001-UULP01000032
WGS_SCAFLD  NZ_UULP01000001-NZ_UULP01000032
//
LOCUS       NZ_UUCC01000000      5981847 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p25.E2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUCC00000000
VERSION     NZ_UUCC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472501
            Assembly: GCF_900587625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUCC00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUCC00000000.  This version of the project
            (01) has the accession number NZ_UUCC01000000, and consists of
            sequences UUCC01000001-UUCC01000058.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900587625.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:40:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,358
            CDSs (total)                      :: 5,288
            Genes (coding)                    :: 5,206
            CDSs (with protein)               :: 5,206
            Genes (RNA)                       :: 70
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 13 of 82
            Pseudo Genes (incomplete)         :: 65 of 82
            Pseudo Genes (internal stop)      :: 11 of 82
            Pseudo Genes (multiple problems)  :: 7 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981847
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p25.E2"
                     /db_xref="taxon:33069"
WGS         UUCC01000001-UUCC01000058
WGS_SCAFLD  NZ_UUCC01000001-NZ_UUCC01000058
//
LOCUS       NZ_UTBJ01000000      5983930 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p11.D8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTBJ00000000
VERSION     NZ_UTBJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104471803
            Assembly: GCF_900580715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTBJ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTBJ00000000.  This version of the project
            (01) has the accession number NZ_UTBJ01000000, and consists of
            sequences UTBJ01000001-UTBJ01000064.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900580715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:38:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,363
            CDSs (total)                      :: 5,294
            Genes (coding)                    :: 5,211
            CDSs (with protein)               :: 5,211
            Genes (RNA)                       :: 69
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 13 of 83
            Pseudo Genes (incomplete)         :: 66 of 83
            Pseudo Genes (internal stop)      :: 11 of 83
            Pseudo Genes (multiple problems)  :: 7 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983930
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p11.D8"
                     /db_xref="taxon:33069"
WGS         UTBJ01000001-UTBJ01000064
WGS_SCAFLD  NZ_UTBJ01000001-NZ_UTBJ01000064
//
LOCUS       NZ_JYHG01000000      5739983 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas amygdali pv. dendropanacis strain CFBP 3226, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JYHG00000000
VERSION     NZ_JYHG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03328994
            Assembly: GCF_000935735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas amygdali pv. dendropanacis (Pseudomonas syringae pv.
            dendropanacis)
  ORGANISM  Pseudomonas amygdali pv. dendropanacis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas
            amygdali.
REFERENCE   1  (bases 1 to 5739983)
  AUTHORS   Bartoli,C., Carrere,S., Lamichhane,J.R., Varvaro,L. and Morris,C.E.
  TITLE     Whole-Genome Sequencing of 10 Pseudomonas syringae Strains
            Representing Different Host Range Spectra
  JOURNAL   Genome Announc 3 (2), e00379-15 (2015)
   PUBMED   25931602
  REMARK    Erratum:[Genome Announc. 2015 Jun 04;3(3):e00628-15. doi:
            10.1128/genomeA.00628-15. PMID: 26044440]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5739983)
  AUTHORS   Bartoli,C., Carrere,S., Lamichhane,J.R., Varvaro,L. and Morris,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2015) Laboratoire des Interactions Plantes
            Micro-organismes, INRA/CNRS, Chemin de Borderouge, Castanet-Tolosan
            31200, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JYHG00000000.1.
            The Pseudomonas amygdali pv. dendropanacis whole genome shotgun
            (WGS) project has the project accession NZ_JYHG00000000.  This
            version of the project (01) has the accession number
            NZ_JYHG01000000, and consists of sequences
            JYHG01000001-JYHG01000247.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 11-FEB-2015
            Assembly Method        :: Velvet v. 1.2.02; SOAPdenovo v. 2.04
            Assembly Name          :: PSDCFBP3226-G1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 95.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000935735.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:48:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,313
            CDSs (total)                      :: 5,256
            Genes (coding)                    :: 4,831
            CDSs (with protein)               :: 4,831
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 425
            CDSs (without protein)            :: 425
            Pseudo Genes (ambiguous residues) :: 0 of 425
            Pseudo Genes (frameshifted)       :: 178 of 425
            Pseudo Genes (incomplete)         :: 249 of 425
            Pseudo Genes (internal stop)      :: 51 of 425
            Pseudo Genes (multiple problems)  :: 47 of 425
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5739983
                     /organism="Pseudomonas amygdali pv. dendropanacis"
                     /mol_type="genomic DNA"
                     /strain="CFBP 3226"
                     /host="Dendropanax trifidus"
                     /culture_collection="CFBP:3226"
                     /db_xref="taxon:235272"
                     /geo_loc_name="Japan"
                     /collection_date="1979-05-01"
                     /pathovar="dendropanacis"
WGS         JYHG01000001-JYHG01000247
WGS_SCAFLD  NZ_JYHG01000001-NZ_JYHG01000247
//
LOCUS       NZ_UTVT01000000      5875955 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p23.D6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTVT00000000
VERSION     NZ_UTVT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472337
            Assembly: GCF_900585985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTVT00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTVT00000000.  This version of the project
            (01) has the accession number NZ_UTVT01000000, and consists of
            sequences UTVT01000001-UTVT01000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:37:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,285
            CDSs (total)                      :: 5,215
            Genes (coding)                    :: 5,134
            CDSs (with protein)               :: 5,134
            Genes (RNA)                       :: 70
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 20 of 81
            Pseudo Genes (incomplete)         :: 65 of 81
            Pseudo Genes (internal stop)      :: 10 of 81
            Pseudo Genes (multiple problems)  :: 13 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5875955
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p23.D6"
                     /db_xref="taxon:33069"
WGS         UTVT01000001-UTVT01000060
WGS_SCAFLD  NZ_UTVT01000001-NZ_UTVT01000060
//
LOCUS       NZ_NHTC01000000      6189597 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain LMC.P80, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NHTC00000000
VERSION     NZ_NHTC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07158950
            Assembly: GCF_002318825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6189597)
  AUTHORS   Karasov,T.L., Barrett,L., Hershberg,R. and Bergelson,J.
  TITLE     Similar levels of gene content variation observed for Pseudomonas
            syringae populations extracted from single and multiple host
            species
  JOURNAL   PLoS One 12 (9), e0184195 (2017)
   PUBMED   28880925
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6189597)
  AUTHORS   Karasov,T. and Bergelson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2017) Developmental Biology, Max Planck
            Institute, Spemanstrasse 35 - 39, Tuebingen 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHTC00000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_NHTC00000000.  This version of the project
            (01) has the accession number NZ_NHTC01000000, and consists of
            sequences NHTC01000001-NHTC01000137.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 25-NOV-2011
            Assembly Method        :: Velvet v. 1.1.05
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 219x
            Sequencing Technology  :: Illumina GAII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002318825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:13:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,448
            CDSs (total)                      :: 5,391
            Genes (coding)                    :: 5,257
            CDSs (with protein)               :: 5,257
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 32 of 134
            Pseudo Genes (incomplete)         :: 127 of 134
            Pseudo Genes (internal stop)      :: 12 of 134
            Pseudo Genes (multiple problems)  :: 30 of 134
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6189597
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="LMC.P80"
                     /host="Arabidopsis thaliana"
                     /db_xref="taxon:317"
                     /geo_loc_name="USA: Lake College, Michigan"
WGS         NHTC01000001-NHTC01000137
WGS_SCAFLD  NZ_NHTC01000001-NZ_NHTC01000137
//
LOCUS       NZ_UTEZ01000000      5922110 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p12.G6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTEZ00000000
VERSION     NZ_UTEZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104471905
            Assembly: GCF_900581655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTEZ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTEZ00000000.  This version of the project
            (01) has the accession number NZ_UTEZ01000000, and consists of
            sequences UTEZ01000001-UTEZ01000454.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900581655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:36:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,503
            CDSs (total)                      :: 5,436
            Genes (coding)                    :: 5,215
            CDSs (with protein)               :: 5,215
            Genes (RNA)                       :: 67
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 221
            CDSs (without protein)            :: 221
            Pseudo Genes (ambiguous residues) :: 0 of 221
            Pseudo Genes (frameshifted)       :: 51 of 221
            Pseudo Genes (incomplete)         :: 161 of 221
            Pseudo Genes (internal stop)      :: 21 of 221
            Pseudo Genes (multiple problems)  :: 12 of 221
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5922110
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p12.G6"
                     /db_xref="taxon:33069"
WGS         UTEZ01000001-UTEZ01000454
WGS_SCAFLD  NZ_UTEZ01000001-NZ_UTEZ01000454
//
LOCUS       NZ_LGYB01000000      4438322 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Providencia stuartii strain INSRA21868, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LGYB00000000
VERSION     NZ_LGYB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03940593
            Assembly: GCF_001267785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Providencia stuartii
  ORGANISM  Providencia stuartii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Providencia.
REFERENCE   1  (bases 1 to 4438322)
  AUTHORS   Manageiro,V., Sampaio,D.A., Pereira,P., Rodrigues,P., Vieira,L.,
            Palos,C. and Canica,M.
  TITLE     Draft Genome Sequence of the First NDM-1-Producing Providencia
            stuartii Strain Isolated in Portugal
  JOURNAL   Genome Announc 3 (5), e01077-15 (2015)
   PUBMED   26404603
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4438322)
  AUTHORS   Manageiro,V., Sampaio,D.A., Pereira,P., Rodrigues,P., Palos,C.,
            Vieira,L. and Canica,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUL-2015) National Reference Laboratory of Antibiotic
            Resistances and Healthcare Associated Infections, National
            Institute of Health Dr. Ricardo Jorge, Av. Padre Cruz, Lisbon
            1649-016, Portugal
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LGYB00000000.1.
            The Providencia stuartii whole genome shotgun (WGS) project has the
            project accession NZ_LGYB00000000.  This version of the project
            (01) has the accession number NZ_LGYB01000000, and consists of
            sequences LGYB01000001-LGYB01000059.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 28-JUL-2015
            Assembly Method        :: CLC Genomics Workbench v. 8.0.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 290.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001267785.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:14:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,204
            CDSs (total)                      :: 4,124
            Genes (coding)                    :: 3,998
            CDSs (with protein)               :: 3,998
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 50 of 126
            Pseudo Genes (incomplete)         :: 96 of 126
            Pseudo Genes (internal stop)      :: 32 of 126
            Pseudo Genes (multiple problems)  :: 42 of 126
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4438322
                     /organism="Providencia stuartii"
                     /mol_type="genomic DNA"
                     /strain="INSRA21868"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /db_xref="taxon:588"
                     /geo_loc_name="Portugal: Lisbon"
                     /collection_date="2014-10-27"
                     /collected_by="HBA"
WGS         LGYB01000001-LGYB01000059
WGS_SCAFLD  NZ_LGYB01000001-NZ_LGYB01000059
//
LOCUS       NZ_UUBA01000000      5943031 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p25.C10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUBA00000000
VERSION     NZ_UUBA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472475
            Assembly: GCF_900587385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUBA00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUBA00000000.  This version of the project
            (01) has the accession number NZ_UUBA01000000, and consists of
            sequences UUBA01000001-UUBA01000052.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900587385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:36:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,351
            CDSs (total)                      :: 5,284
            Genes (coding)                    :: 5,199
            CDSs (with protein)               :: 5,199
            Genes (RNA)                       :: 67
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 22 of 85
            Pseudo Genes (incomplete)         :: 67 of 85
            Pseudo Genes (internal stop)      :: 9 of 85
            Pseudo Genes (multiple problems)  :: 12 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5943031
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p25.C10"
                     /db_xref="taxon:33069"
WGS         UUBA01000001-UUBA01000052
WGS_SCAFLD  NZ_UUBA01000001-NZ_UUBA01000052
//
LOCUS       NZ_UUBQ01000000      5958797 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p25.D1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUBQ00000000
VERSION     NZ_UUBQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472489
            Assembly: GCF_900587555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUBQ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUBQ00000000.  This version of the project
            (01) has the accession number NZ_UUBQ01000000, and consists of
            sequences UUBQ01000001-UUBQ01000174.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900587555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:37:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,430
            CDSs (total)                      :: 5,361
            Genes (coding)                    :: 5,232
            CDSs (with protein)               :: 5,232
            Genes (RNA)                       :: 69
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2 (5S, 16S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 27 of 129
            Pseudo Genes (incomplete)         :: 98 of 129
            Pseudo Genes (internal stop)      :: 13 of 129
            Pseudo Genes (multiple problems)  :: 9 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5958797
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p25.D1"
                     /db_xref="taxon:33069"
WGS         UUBQ01000001-UUBQ01000174
WGS_SCAFLD  NZ_UUBQ01000001-NZ_UUBQ01000174
//
LOCUS       NZ_UUIU01000000      5983516 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p2.D6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUIU00000000
VERSION     NZ_UUIU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472679
            Assembly: GCF_900589415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUIU00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUIU00000000.  This version of the project
            (01) has the accession number NZ_UUIU01000000, and consists of
            sequences UUIU01000001-UUIU01000050.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900589415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:40:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,366
            CDSs (total)                      :: 5,292
            Genes (coding)                    :: 5,209
            CDSs (with protein)               :: 5,209
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 13 of 83
            Pseudo Genes (incomplete)         :: 66 of 83
            Pseudo Genes (internal stop)      :: 11 of 83
            Pseudo Genes (multiple problems)  :: 7 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983516
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p2.D6"
                     /db_xref="taxon:33069"
WGS         UUIU01000001-UUIU01000050
WGS_SCAFLD  NZ_UUIU01000001-NZ_UUIU01000050
//
LOCUS       NZ_UUEF01000000      5979813 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.C4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUEF00000000
VERSION     NZ_UUEF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472562
            Assembly: GCF_900588215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUEF00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUEF00000000.  This version of the project
            (01) has the accession number NZ_UUEF01000000, and consists of
            sequences UUEF01000001-UUEF01000053.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:39:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,355
            CDSs (total)                      :: 5,286
            Genes (coding)                    :: 5,202
            CDSs (with protein)               :: 5,202
            Genes (RNA)                       :: 69
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 13 of 84
            Pseudo Genes (incomplete)         :: 66 of 84
            Pseudo Genes (internal stop)      :: 12 of 84
            Pseudo Genes (multiple problems)  :: 7 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5979813
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.C4"
                     /db_xref="taxon:33069"
WGS         UUEF01000001-UUEF01000053
WGS_SCAFLD  NZ_UUEF01000001-NZ_UUEF01000053
//
LOCUS       NZ_LFQJ01000000      5669134 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Priestia megaterium strain Riq5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LFQJ00000000
VERSION     NZ_LFQJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03793180
            Assembly: GCF_001238505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Priestia megaterium (Bacillus megaterium)
  ORGANISM  Priestia megaterium
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Priestia.
REFERENCE   1  (bases 1 to 5669134)
  AUTHORS   Chan,K.G., Hong,K.W., Chong,T.M. and Kher,H.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2015) Genetics and Molecular, University of
            Malaya, Jalan Universiti, Kuala Lumpur, Wilayah Persekutuan 50603,
            Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LFQJ00000000.1.
            The Priestia megaterium whole genome shotgun (WGS) project has the
            project accession NZ_LFQJ00000000.  This version of the project
            (01) has the accession number NZ_LFQJ01000000, and consists of
            sequences LFQJ01000001-LFQJ01000194.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            The organism was changed from 'Bacillus flexus' to 'Bacillus
            megaterium' in August 2018.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_001238505.1
            Current Name        :: Bacillus megaterium
            Previous Name       :: Bacillus flexus
            Date Updated        :: 2018-08-16
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_001591525.1
            A1 Name             :: Bacillus megaterium
            A1 ANI              :: 96.91019%
            A1 Query Coverage   :: 82.45%
            A1 Subject Coverage :: 84.77%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_001591565.1
            A2 Name             :: Bacillus flexus
            A2 ANI              :: 81.238%
            A2 Query Coverage   :: 9.52%
            A2 Subject Coverage :: 13.82%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 24-JUN-2015
            Assembly Method        :: CLC Genomics Workbench v. 7.0.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 212300.037488442x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001238505.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:53:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,918
            CDSs (total)                      :: 5,808
            Genes (coding)                    :: 5,729
            CDSs (with protein)               :: 5,729
            Genes (RNA)                       :: 110
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 17 of 79
            Pseudo Genes (incomplete)         :: 59 of 79
            Pseudo Genes (internal stop)      :: 9 of 79
            Pseudo Genes (multiple problems)  :: 6 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5669134
                     /organism="Priestia megaterium"
                     /mol_type="genomic DNA"
                     /strain="Riq5"
                     /isolation_source="soil"
                     /db_xref="taxon:1404"
                     /geo_loc_name="France: Riquewhr"
                     /collection_date="2014-09-01"
                     /collected_by="Hong Kar Wai, Chong Teik Meng"
                     /identified_by="Kher Heng Leong"
WGS         LFQJ01000001-LFQJ01000194
WGS_SCAFLD  NZ_LFQJ01000001-NZ_LFQJ01000194
//
LOCUS       NZ_UULN01000000      6009238 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p3.C8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UULN00000000
VERSION     NZ_UULN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472753
            Assembly: GCF_900590105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UULN00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UULN00000000.  This version of the project
            (01) has the accession number NZ_UULN01000000, and consists of
            sequences UULN01000001-UULN01000033.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900590105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:42:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,400
            CDSs (total)                      :: 5,326
            Genes (coding)                    :: 5,248
            CDSs (with protein)               :: 5,248
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 17 of 78
            Pseudo Genes (incomplete)         :: 59 of 78
            Pseudo Genes (internal stop)      :: 9 of 78
            Pseudo Genes (multiple problems)  :: 7 of 78
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6009238
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p3.C8"
                     /db_xref="taxon:33069"
WGS         UULN01000001-UULN01000033
WGS_SCAFLD  NZ_UULN01000001-NZ_UULN01000033
//
LOCUS       NZ_NHSR01000000      6229891 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain RM.P20, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NHSR00000000
VERSION     NZ_NHSR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07158962
            Assembly: GCF_002318655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 6229891)
  AUTHORS   Karasov,T.L., Barrett,L., Hershberg,R. and Bergelson,J.
  TITLE     Similar levels of gene content variation observed for Pseudomonas
            syringae populations extracted from single and multiple host
            species
  JOURNAL   PLoS One 12 (9), e0184195 (2017)
   PUBMED   28880925
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6229891)
  AUTHORS   Karasov,T. and Bergelson,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-MAY-2017) Developmental Biology, Max Planck
            Institute, Spemanstrasse 35 - 39, Tuebingen 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHSR00000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_NHSR00000000.  This version of the project
            (01) has the accession number NZ_NHSR01000000, and consists of
            sequences NHSR01000001-NHSR01000159.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 25-NOV-2011
            Assembly Method        :: Velvet v. 1.1.05
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 154x
            Sequencing Technology  :: Illumina GAII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002318655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:05:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,528
            CDSs (total)                      :: 5,480
            Genes (coding)                    :: 5,333
            CDSs (with protein)               :: 5,333
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 46 of 147
            Pseudo Genes (incomplete)         :: 120 of 147
            Pseudo Genes (internal stop)      :: 13 of 147
            Pseudo Genes (multiple problems)  :: 28 of 147
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6229891
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="RM.P20"
                     /host="Arabidopsis thaliana"
                     /db_xref="taxon:317"
                     /geo_loc_name="USA: La Porte, Indiana"
                     /collection_date="2008"
WGS         NHSR01000001-NHSR01000159
WGS_SCAFLD  NZ_NHSR01000001-NZ_NHSR01000159
//
LOCUS       NZ_UUAQ01000000      6034294 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p25.B1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUAQ00000000
VERSION     NZ_UUAQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472467
            Assembly: GCF_900587285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUAQ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUAQ00000000.  This version of the project
            (01) has the accession number NZ_UUAQ01000000, and consists of
            sequences UUAQ01000001-UUAQ01000719.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900587285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:41:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,911
            CDSs (total)                      :: 5,839
            Genes (coding)                    :: 5,532
            CDSs (with protein)               :: 5,532
            Genes (RNA)                       :: 72
            rRNAs                             :: 5, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 307
            CDSs (without protein)            :: 307
            Pseudo Genes (ambiguous residues) :: 0 of 307
            Pseudo Genes (frameshifted)       :: 45 of 307
            Pseudo Genes (incomplete)         :: 254 of 307
            Pseudo Genes (internal stop)      :: 24 of 307
            Pseudo Genes (multiple problems)  :: 16 of 307
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6034294
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p25.B1"
                     /db_xref="taxon:33069"
WGS         UUAQ01000001-UUAQ01000719
WGS_SCAFLD  NZ_UUAQ01000001-NZ_UUAQ01000719
//
LOCUS       NZ_UTSY01000000      5957528 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.B2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTSY00000000
VERSION     NZ_UTSY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472262
            Assembly: GCF_900585285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTSY00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTSY00000000.  This version of the project
            (01) has the accession number NZ_UTSY01000000, and consists of
            sequences UTSY01000001-UTSY01000048.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:39:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,391
            CDSs (total)                      :: 5,316
            Genes (coding)                    :: 5,234
            CDSs (with protein)               :: 5,234
            Genes (RNA)                       :: 75
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 16 of 82
            Pseudo Genes (incomplete)         :: 62 of 82
            Pseudo Genes (internal stop)      :: 13 of 82
            Pseudo Genes (multiple problems)  :: 9 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5957528
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.B2"
                     /db_xref="taxon:33069"
WGS         UTSY01000001-UTSY01000048
WGS_SCAFLD  NZ_UTSY01000001-NZ_UTSY01000048
//
LOCUS       NZ_QSFK01000000      5154677 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain AM43-4BH, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QSFK00000000
VERSION     NZ_QSFK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09736569
            Assembly: GCF_003466945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5154677)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     A genome reference for cultivated species of the human gut
            microbiota
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5154677)
  AUTHORS   Zou,Y., Xue,W. and Luo,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2018) BGI-CNGB, BGI, No. 11, Beishan IZ., Yantian
            Dist., Shenzhen, Guangdong 518083, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QSFK00000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_QSFK00000000.  This version of the project
            (01) has the accession number NZ_QSFK01000000, and consists of
            sequences QSFK01000001-QSFK01000115.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina Hiseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003466945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:26:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,384
            CDSs (total)                      :: 4,306
            Genes (coding)                    :: 4,169
            CDSs (with protein)               :: 4,169
            Genes (RNA)                       :: 78
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 43 of 137
            Pseudo Genes (incomplete)         :: 96 of 137
            Pseudo Genes (internal stop)      :: 19 of 137
            Pseudo Genes (multiple problems)  :: 17 of 137
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5154677
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="AM43-4BH"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China: Shenzhen"
                     /collection_date="2014-01-01"
WGS         QSFK01000001-QSFK01000115
WGS_SCAFLD  NZ_QSFK01000001-NZ_QSFK01000115
//
LOCUS       NZ_UTSV01000000      5983454 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.B5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTSV00000000
VERSION     NZ_UTSV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472265
            Assembly: GCF_900585245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTSV00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTSV00000000.  This version of the project
            (01) has the accession number NZ_UTSV01000000, and consists of
            sequences UTSV01000001-UTSV01000052.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585245.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:42:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,360
            CDSs (total)                      :: 5,290
            Genes (coding)                    :: 5,209
            CDSs (with protein)               :: 5,209
            Genes (RNA)                       :: 70
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 13 of 81
            Pseudo Genes (incomplete)         :: 64 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983454
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.B5"
                     /db_xref="taxon:33069"
WGS         UTSV01000001-UTSV01000052
WGS_SCAFLD  NZ_UTSV01000001-NZ_UTSV01000052
//
LOCUS       NZ_UUAP01000000      5980503 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p25.B3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUAP00000000
VERSION     NZ_UUAP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472469
            Assembly: GCF_900587295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUAP00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUAP00000000.  This version of the project
            (01) has the accession number NZ_UUAP01000000, and consists of
            sequences UUAP01000001-UUAP01000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900587295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:40:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,359
            CDSs (total)                      :: 5,290
            Genes (coding)                    :: 5,211
            CDSs (with protein)               :: 5,211
            Genes (RNA)                       :: 69
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 12 of 79
            Pseudo Genes (incomplete)         :: 63 of 79
            Pseudo Genes (internal stop)      :: 11 of 79
            Pseudo Genes (multiple problems)  :: 7 of 79
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980503
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p25.B3"
                     /db_xref="taxon:33069"
WGS         UUAP01000001-UUAP01000060
WGS_SCAFLD  NZ_UUAP01000001-NZ_UUAP01000060
//
LOCUS       NZ_SDQV01000000      2093749 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pediococcus acidilactici strain F7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SDQV00000000
VERSION     NZ_SDQV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10822531
            Assembly: GCF_011009715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pediococcus acidilactici
  ORGANISM  Pediococcus acidilactici
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Pediococcus; Pediococcus acidilactici group.
REFERENCE   1  (bases 1 to 2093749)
  AUTHORS   Stedman,A., Van Vliet,A.H.M., Chambers,M. and Gutierrez-Merino,J.
  TITLE     The phenotype and complete genome sequence of lactic acid bacteria
            from European badgers (Meles meles) reveal potentially functional
            probiotic properties associated with antimicrobial activity and
            immunomodulation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2093749)
  AUTHORS   Stedman,A., Van Vliet,A.H.M., Chambers,M. and Gutierrez-Merino,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2019) School of Veterinary Medicine, Department
            of Pathology and Infectious Diseases, University of Surrey, Daphne
            Jackson Road, Guildford GU2 7AL, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SDQV00000000.1.
            The Pediococcus acidilactici whole genome shotgun (WGS) project has
            the project accession NZ_SDQV00000000.  This version of the project
            (01) has the accession number NZ_SDQV01000000, and consists of
            sequences SDQV01000001-SDQV01000027.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011009715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:54:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,064
            CDSs (total)                      :: 1,996
            Genes (coding)                    :: 1,959
            CDSs (with protein)               :: 1,959
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 9 of 37
            Pseudo Genes (incomplete)         :: 26 of 37
            Pseudo Genes (internal stop)      :: 8 of 37
            Pseudo Genes (multiple problems)  :: 6 of 37
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093749
                     /organism="Pediococcus acidilactici"
                     /mol_type="genomic DNA"
                     /strain="F7"
                     /isolation_source="fecal sample"
                     /host="Meles meles"
                     /db_xref="taxon:1254"
                     /geo_loc_name="United Kingdom"
                     /collection_date="2017"
WGS         SDQV01000001-SDQV01000027
WGS_SCAFLD  NZ_SDQV01000001-NZ_SDQV01000027
//
LOCUS       NZ_UTFG01000000      6007388 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p12.H1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTFG00000000
VERSION     NZ_UTFG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104471909
            Assembly: GCF_900581755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTFG00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTFG00000000.  This version of the project
            (01) has the accession number NZ_UTFG01000000, and consists of
            sequences UTFG01000001-UTFG01000151.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900581755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:43:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,472
            CDSs (total)                      :: 5,402
            Genes (coding)                    :: 5,273
            CDSs (with protein)               :: 5,273
            Genes (RNA)                       :: 70
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 129
            CDSs (without protein)            :: 129
            Pseudo Genes (ambiguous residues) :: 0 of 129
            Pseudo Genes (frameshifted)       :: 27 of 129
            Pseudo Genes (incomplete)         :: 108 of 129
            Pseudo Genes (internal stop)      :: 12 of 129
            Pseudo Genes (multiple problems)  :: 16 of 129
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6007388
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p12.H1"
                     /db_xref="taxon:33069"
WGS         UTFG01000001-UTFG01000151
WGS_SCAFLD  NZ_UTFG01000001-NZ_UTFG01000151
//
LOCUS       NZ_UTTR01000000      5958750 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p22.E2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTTR00000000
VERSION     NZ_UTTR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472283
            Assembly: GCF_900585475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTTR00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTTR00000000.  This version of the project
            (01) has the accession number NZ_UTTR01000000, and consists of
            sequences UTTR01000001-UTTR01000044.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:42:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,392
            CDSs (total)                      :: 5,317
            Genes (coding)                    :: 5,236
            CDSs (with protein)               :: 5,236
            Genes (RNA)                       :: 75
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 13 of 81
            Pseudo Genes (incomplete)         :: 63 of 81
            Pseudo Genes (internal stop)      :: 13 of 81
            Pseudo Genes (multiple problems)  :: 8 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5958750
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p22.E2"
                     /db_xref="taxon:33069"
WGS         UTTR01000001-UTTR01000044
WGS_SCAFLD  NZ_UTTR01000001-NZ_UTTR01000044
//
LOCUS       NZ_UUPC01000000      5979421 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p4.E6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUPC00000000
VERSION     NZ_UUPC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472843
            Assembly: GCF_900591045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUPC00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUPC00000000.  This version of the project
            (01) has the accession number NZ_UUPC01000000, and consists of
            sequences UUPC01000001-UUPC01000050.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900591045.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:44:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,351
            CDSs (total)                      :: 5,284
            Genes (coding)                    :: 5,202
            CDSs (with protein)               :: 5,202
            Genes (RNA)                       :: 67
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 13 of 82
            Pseudo Genes (incomplete)         :: 65 of 82
            Pseudo Genes (internal stop)      :: 11 of 82
            Pseudo Genes (multiple problems)  :: 7 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5979421
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p4.E6"
                     /db_xref="taxon:33069"
WGS         UUPC01000001-UUPC01000050
WGS_SCAFLD  NZ_UUPC01000001-NZ_UUPC01000050
//
LOCUS       NZ_UUBE01000000      5981941 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p25.C3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUBE00000000
VERSION     NZ_UUBE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472480
            Assembly: GCF_900587425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUBE00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUBE00000000.  This version of the project
            (01) has the accession number NZ_UUBE01000000, and consists of
            sequences UUBE01000001-UUBE01000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900587425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:40:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,357
            CDSs (total)                      :: 5,287
            Genes (coding)                    :: 5,206
            CDSs (with protein)               :: 5,206
            Genes (RNA)                       :: 70
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 12 of 81
            Pseudo Genes (incomplete)         :: 65 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981941
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p25.C3"
                     /db_xref="taxon:33069"
WGS         UUBE01000001-UUBE01000055
WGS_SCAFLD  NZ_UUBE01000001-NZ_UUBE01000055
//
LOCUS       NZ_UUEV01000000      5884334 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.D6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUEV00000000
VERSION     NZ_UUEV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472571
            Assembly: GCF_900588295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUEV00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUEV00000000.  This version of the project
            (01) has the accession number NZ_UUEV01000000, and consists of
            sequences UUEV01000001-UUEV01000618.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:45:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,715
            CDSs (total)                      :: 5,647
            Genes (coding)                    :: 5,399
            CDSs (with protein)               :: 5,399
            Genes (RNA)                       :: 68
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 248
            CDSs (without protein)            :: 248
            Pseudo Genes (ambiguous residues) :: 0 of 248
            Pseudo Genes (frameshifted)       :: 23 of 248
            Pseudo Genes (incomplete)         :: 216 of 248
            Pseudo Genes (internal stop)      :: 20 of 248
            Pseudo Genes (multiple problems)  :: 11 of 248
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5884334
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.D6"
                     /db_xref="taxon:33069"
WGS         UUEV01000001-UUEV01000618
WGS_SCAFLD  NZ_UUEV01000001-NZ_UUEV01000618
//
LOCUS       NZ_UTUZ01000000      5878498 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p23.A8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UTUZ00000000
VERSION     NZ_UTUZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472312
            Assembly: GCF_900585805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UTUZ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UTUZ00000000.  This version of the project
            (01) has the accession number NZ_UTUZ01000000, and consists of
            sequences UTUZ01000001-UTUZ01000056.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900585805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:46:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,294
            CDSs (total)                      :: 5,216
            Genes (coding)                    :: 5,134
            CDSs (with protein)               :: 5,134
            Genes (RNA)                       :: 78
            rRNAs                             :: 7, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 22 of 82
            Pseudo Genes (incomplete)         :: 64 of 82
            Pseudo Genes (internal stop)      :: 10 of 82
            Pseudo Genes (multiple problems)  :: 13 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5878498
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p23.A8"
                     /db_xref="taxon:33069"
WGS         UTUZ01000001-UTUZ01000056
WGS_SCAFLD  NZ_UTUZ01000001-NZ_UTUZ01000056
//
LOCUS       NZ_UUGA01000000      6014308 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.H1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUGA00000000
VERSION     NZ_UUGA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472605
            Assembly: GCF_900588675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUGA00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUGA00000000.  This version of the project
            (01) has the accession number NZ_UUGA01000000, and consists of
            sequences UUGA01000001-UUGA01000052.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588675.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:45:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,448
            CDSs (total)                      :: 5,369
            Genes (coding)                    :: 5,286
            CDSs (with protein)               :: 5,286
            Genes (RNA)                       :: 79
            rRNAs                             :: 7, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 16S)
            partial rRNAs                     :: 2, 5 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 22 of 83
            Pseudo Genes (incomplete)         :: 64 of 83
            Pseudo Genes (internal stop)      :: 10 of 83
            Pseudo Genes (multiple problems)  :: 10 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6014308
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.H1"
                     /db_xref="taxon:33069"
WGS         UUGA01000001-UUGA01000052
WGS_SCAFLD  NZ_UUGA01000001-NZ_UUGA01000052
//
LOCUS       NZ_UUIX01000000      5984506 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p2.D7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUIX00000000
VERSION     NZ_UUIX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472680
            Assembly: GCF_900589425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUIX00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUIX00000000.  This version of the project
            (01) has the accession number NZ_UUIX01000000, and consists of
            sequences UUIX01000001-UUIX01000046.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900589425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:46:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,365
            CDSs (total)                      :: 5,291
            Genes (coding)                    :: 5,208
            CDSs (with protein)               :: 5,208
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 15 of 83
            Pseudo Genes (incomplete)         :: 64 of 83
            Pseudo Genes (internal stop)      :: 11 of 83
            Pseudo Genes (multiple problems)  :: 7 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5984506
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p2.D7"
                     /db_xref="taxon:33069"
WGS         UUIX01000001-UUIX01000046
WGS_SCAFLD  NZ_UUIX01000001-NZ_UUIX01000046
//
LOCUS       NZ_VYTX01000000      5817483 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Priestia megaterium strain RmBm31, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VYTX00000000
VERSION     NZ_VYTX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12779970
            Assembly: GCF_009728545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Priestia megaterium (Bacillus megaterium)
  ORGANISM  Priestia megaterium
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Priestia.
REFERENCE   1  (bases 1 to 5817483)
  AUTHORS   Dahmani,M.A., Desrut,A., Moumen,B., Verdon,J., Mermouri,L.,
            Kacem,M., Coutos-Thevenot,P., Kaid-Harche,M., Berges,T. and
            Vriet,C.
  TITLE     Unearthing the Plant Growth-Promoting Traits of Bacillus megaterium
            RmBm31, an Endophytic Bacterium Isolated From Root Nodules of
            Retama monosperma
  JOURNAL   Front Plant Sci 11, 124 (2020)
   PUBMED   32174934
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5817483)
  AUTHORS   Moumen,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2019) UMR7267, Universite de Poitiers ecologie et
            Biologie des Interactions, UMR CNRS 7267, 5, rue Albert Turpain TSA
            51106, Poitiers 86000, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VYTX00000000.1.
            The Priestia megaterium whole genome shotgun (WGS) project has the
            project accession NZ_VYTX00000000.  This version of the project
            (01) has the accession number NZ_VYTX01000000, and consists of
            sequences VYTX01000001-VYTX01000081.
            Bacteria and source DNA available from Cecile Vriet
            cecile.vriet@univ-poitiers.fr.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 02-AUG-2019
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009728545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:14:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,050
            CDSs (total)                      :: 5,886
            Genes (coding)                    :: 5,795
            CDSs (with protein)               :: 5,795
            Genes (RNA)                       :: 164
            rRNAs                             :: 18, 12, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 13, 12, 5 (5S, 16S, 23S)
            tRNAs                             :: 121
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 26 of 93
            Pseudo Genes (incomplete)         :: 66 of 93
            Pseudo Genes (internal stop)      :: 14 of 93
            Pseudo Genes (multiple problems)  :: 13 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5817483
                     /organism="Priestia megaterium"
                     /mol_type="genomic DNA"
                     /strain="RmBm31"
                     /isolation_source="root nodules"
                     /host="Retama monosperma"
                     /db_xref="taxon:1404"
                     /geo_loc_name="Algeria: Oran"
                     /lat_lon="35.42 N 0.34 W"
                     /altitude="162 m"
                     /collection_date="2016-05-10"
                     /collected_by="Universite Oran Ahmed Ben Bella, Faculte
                     SNV, Departement de Biotechnologie"
WGS         VYTX01000001-VYTX01000081
WGS_SCAFLD  NZ_VYTX01000001-NZ_VYTX01000081
//
LOCUS       NZ_UUCF01000000      5943149 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p25.F10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUCF00000000
VERSION     NZ_UUCF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472508
            Assembly: GCF_900587685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUCF00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUCF00000000.  This version of the project
            (01) has the accession number NZ_UUCF01000000, and consists of
            sequences UUCF01000001-UUCF01000038.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900587685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:45:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,350
            CDSs (total)                      :: 5,282
            Genes (coding)                    :: 5,197
            CDSs (with protein)               :: 5,197
            Genes (RNA)                       :: 68
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 85
            CDSs (without protein)            :: 85
            Pseudo Genes (ambiguous residues) :: 0 of 85
            Pseudo Genes (frameshifted)       :: 23 of 85
            Pseudo Genes (incomplete)         :: 67 of 85
            Pseudo Genes (internal stop)      :: 9 of 85
            Pseudo Genes (multiple problems)  :: 13 of 85
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5943149
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p25.F10"
                     /db_xref="taxon:33069"
WGS         UUCF01000001-UUCF01000038
WGS_SCAFLD  NZ_UUCF01000001-NZ_UUCF01000038
//
LOCUS       NZ_UVTH01000000      6059547 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p4.H8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UVTH00000000
VERSION     NZ_UVTH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472872
            Assembly: GCF_900598915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UVTH00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UVTH00000000.  This version of the project
            (01) has the accession number NZ_UVTH01000000, and consists of
            sequences UVTH01000001-UVTH01000051.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900598915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:47:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,436
            CDSs (total)                      :: 5,361
            Genes (coding)                    :: 5,279
            CDSs (with protein)               :: 5,279
            Genes (RNA)                       :: 75
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5, 2 (5S, 16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 19 of 82
            Pseudo Genes (incomplete)         :: 63 of 82
            Pseudo Genes (internal stop)      :: 15 of 82
            Pseudo Genes (multiple problems)  :: 11 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6059547
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p4.H8"
                     /db_xref="taxon:33069"
WGS         UVTH01000001-UVTH01000051
WGS_SCAFLD  NZ_UVTH01000001-NZ_UVTH01000051
//
LOCUS       NZ_JADMOQ010000000   5112334 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain BSD2780120874b_170522_B7, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JADMOQ000000000
VERSION     NZ_JADMOQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15532970
            Assembly: GCF_015558775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5112334)
  AUTHORS   Aggarwala,V. and Faith,J.
  TITLE     Quantification of discrete gut bacterial strains following fecal
            transplantation for recurrent Clostridioides difficile infection
            demonstrates long-term stable engraftment in non-relapsing
            recipients
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5112334)
  AUTHORS   Aggarwala,V. and Faith,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-SEP-2020) Genetics and Genomic Sciences, Icahn School
            of Medicine at Mount Sinai, 1470 Madison Ave, New York, NY 10029,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADMOQ000000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_JADMOQ000000000.  This version of the project
            (01) has the accession number NZ_JADMOQ010000000, and consists of
            sequences JADMOQ010000001-JADMOQ010000142.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37.59x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015558775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:30:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,337
            CDSs (total)                      :: 4,258
            Genes (coding)                    :: 4,115
            CDSs (with protein)               :: 4,115
            Genes (RNA)                       :: 79
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 72
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 143
            Pseudo Genes (ambiguous residues) :: 0 of 143
            Pseudo Genes (frameshifted)       :: 47 of 143
            Pseudo Genes (incomplete)         :: 101 of 143
            Pseudo Genes (internal stop)      :: 12 of 143
            Pseudo Genes (multiple problems)  :: 14 of 143
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5112334
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="BSD2780120874b_170522_B7"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="USA"
                     /collection_date="2017-05-22"
WGS         JADMOQ010000001-JADMOQ010000142
WGS_SCAFLD  NZ_JADMOQ010000001-NZ_JADMOQ010000142
//
LOCUS       NZ_UUDZ01000000      5982892 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.B5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUDZ00000000
VERSION     NZ_UUDZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472554
            Assembly: GCF_900588165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUDZ00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUDZ00000000.  This version of the project
            (01) has the accession number NZ_UUDZ01000000, and consists of
            sequences UUDZ01000001-UUDZ01000042.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588165.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:46:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,357
            CDSs (total)                      :: 5,283
            Genes (coding)                    :: 5,202
            CDSs (with protein)               :: 5,202
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 13 of 81
            Pseudo Genes (incomplete)         :: 63 of 81
            Pseudo Genes (internal stop)      :: 12 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982892
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.B5"
                     /db_xref="taxon:33069"
WGS         UUDZ01000001-UUDZ01000042
WGS_SCAFLD  NZ_UUDZ01000001-NZ_UUDZ01000042
//
LOCUS       NZ_UWBE01000000      5988364 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p7.D2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UWBE00000000
VERSION     NZ_UWBE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104473074
            Assembly: GCF_900600885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UWBE00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UWBE00000000.  This version of the project
            (01) has the accession number NZ_UWBE01000000, and consists of
            sequences UWBE01000001-UWBE01000049.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900600885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:55:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,373
            CDSs (total)                      :: 5,299
            Genes (coding)                    :: 5,218
            CDSs (with protein)               :: 5,218
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 15 of 81
            Pseudo Genes (incomplete)         :: 62 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5988364
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p7.D2"
                     /db_xref="taxon:33069"
WGS         UWBE01000001-UWBE01000049
WGS_SCAFLD  NZ_UWBE01000001-NZ_UWBE01000049
//
LOCUS       NZ_UUJE01000000      5982899 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p2.E9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUJE00000000
VERSION     NZ_UUJE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472691
            Assembly: GCF_900589515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUJE00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUJE00000000.  This version of the project
            (01) has the accession number NZ_UUJE01000000, and consists of
            sequences UUJE01000001-UUJE01000046.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900589515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:44:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,360
            CDSs (total)                      :: 5,286
            Genes (coding)                    :: 5,205
            CDSs (with protein)               :: 5,205
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 5, 3 (5S, 16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 13 of 81
            Pseudo Genes (incomplete)         :: 64 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 7 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982899
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p2.E9"
                     /db_xref="taxon:33069"
WGS         UUJE01000001-UUJE01000046
WGS_SCAFLD  NZ_UUJE01000001-NZ_UUJE01000046
//
LOCUS       NZ_UUNH01000000      5955208 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p3.G4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUNH00000000
VERSION     NZ_UUNH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472788
            Assembly: GCF_900590565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUNH00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUNH00000000.  This version of the project
            (01) has the accession number NZ_UUNH01000000, and consists of
            sequences UUNH01000001-UUNH01000293.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900590565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:51:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,523
            CDSs (total)                      :: 5,457
            Genes (coding)                    :: 5,297
            CDSs (with protein)               :: 5,297
            Genes (RNA)                       :: 66
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 30 of 160
            Pseudo Genes (incomplete)         :: 127 of 160
            Pseudo Genes (internal stop)      :: 19 of 160
            Pseudo Genes (multiple problems)  :: 13 of 160
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5955208
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p3.G4"
                     /db_xref="taxon:33069"
WGS         UUNH01000001-UUNH01000293
WGS_SCAFLD  NZ_UUNH01000001-NZ_UUNH01000293
//
LOCUS       NZ_UUGL01000000      5891274 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p27.B1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUGL00000000
VERSION     NZ_UUGL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472619
            Assembly: GCF_900588805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUGL00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUGL00000000.  This version of the project
            (01) has the accession number NZ_UUGL01000000, and consists of
            sequences UUGL01000001-UUGL01000080.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:49:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,312
            CDSs (total)                      :: 5,234
            Genes (coding)                    :: 5,151
            CDSs (with protein)               :: 5,151
            Genes (RNA)                       :: 78
            rRNAs                             :: 7, 5, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 5, 1 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 22 of 83
            Pseudo Genes (incomplete)         :: 67 of 83
            Pseudo Genes (internal stop)      :: 10 of 83
            Pseudo Genes (multiple problems)  :: 15 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5891274
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p27.B1"
                     /db_xref="taxon:33069"
WGS         UUGL01000001-UUGL01000080
WGS_SCAFLD  NZ_UUGL01000001-NZ_UUGL01000080
//
LOCUS       NZ_VLIH01000000      5909654 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain P139, whole genome shotgun sequencing
            project.
ACCESSION   NZ_VLIH00000000
VERSION     NZ_VLIH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12288625
            Assembly: GCF_009898585.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5909654)
  AUTHORS   Lacault,C., Briand,M., Jacques,M.A. and Darrasse,A.
  TITLE     Zucchini Vein Clearing Disease Is Caused by Several Lineages Within
            Pseudomonas syringae Species Complex
  JOURNAL   Phytopathology 110 (4), 744-757 (2020)
   PUBMED   31909688
REFERENCE   2  (bases 1 to 5909654)
  AUTHORS   Lacault,C., Briand,M., Jacques,M.-A. and Darrasse,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2019) IRHS (Institut de Recherche en Horticulture
            et Semences), INRA, 42 rue Georges Morel, Beaucouze F-49071, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VLIH00000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_VLIH00000000.  This version of the project
            (01) has the accession number NZ_VLIH01000000, and consists of
            sequences VLIH01000001-VLIH01000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from P139.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 273.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009898585.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,177
            CDSs (total)                      :: 5,112
            Genes (coding)                    :: 4,966
            CDSs (with protein)               :: 4,966
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 44 of 146
            Pseudo Genes (incomplete)         :: 121 of 146
            Pseudo Genes (internal stop)      :: 20 of 146
            Pseudo Genes (multiple problems)  :: 35 of 146
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5909654
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="P139"
                     /host="Cucurbita pepo subsp. pepo"
                     /db_xref="taxon:317"
                     /geo_loc_name="China"
                     /collection_date="2015"
WGS         VLIH01000001-VLIH01000066
WGS_SCAFLD  NZ_VLIH01000001-NZ_VLIH01000066
//
LOCUS       NZ_UUEP01000000      5980267 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p26.D5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUEP00000000
VERSION     NZ_UUEP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472570
            Assembly: GCF_900588335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUEP00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUEP00000000.  This version of the project
            (01) has the accession number NZ_UUEP01000000, and consists of
            sequences UUEP01000001-UUEP01000065.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900588335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:48:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,360
            CDSs (total)                      :: 5,291
            Genes (coding)                    :: 5,209
            CDSs (with protein)               :: 5,209
            Genes (RNA)                       :: 69
            rRNAs                             :: 7, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (5S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 14 of 82
            Pseudo Genes (incomplete)         :: 64 of 82
            Pseudo Genes (internal stop)      :: 11 of 82
            Pseudo Genes (multiple problems)  :: 7 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980267
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p26.D5"
                     /db_xref="taxon:33069"
WGS         UUEP01000001-UUEP01000065
WGS_SCAFLD  NZ_UUEP01000001-NZ_UUEP01000065
//
LOCUS       NZ_UUMO01000000      6026150 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas viridiflava isolate p3.F1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_UUMO00000000
VERSION     NZ_UUMO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA104472777
            Assembly: GCF_900590395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas viridiflava
  ORGANISM  Pseudomonas viridiflava
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1
  AUTHORS   Karasov L,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-OCT-2018) MAX PLANCK INSTITUTE FOR DEVELOPMENTAL
            BIOLOGY, Paul Ehrlich Strasse 20, Tuebingen, 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            UUMO00000000.1.
            The Pseudomonas viridiflava whole genome shotgun (WGS) project has
            the project accession NZ_UUMO00000000.  This version of the project
            (01) has the accession number NZ_UUMO01000000, and consists of
            sequences UUMO01000001-UUMO01000054.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900590395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:51:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,432
            CDSs (total)                      :: 5,358
            Genes (coding)                    :: 5,276
            CDSs (with protein)               :: 5,276
            Genes (RNA)                       :: 74
            rRNAs                             :: 7, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 19 of 82
            Pseudo Genes (incomplete)         :: 71 of 82
            Pseudo Genes (internal stop)      :: 9 of 82
            Pseudo Genes (multiple problems)  :: 13 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6026150
                     /organism="Pseudomonas viridiflava"
                     /mol_type="genomic DNA"
                     /isolate="p3.F1"
                     /db_xref="taxon:33069"
WGS         UUMO01000001-UUMO01000054
WGS_SCAFLD  NZ_UUMO01000001-NZ_UUMO01000054
//
LOCUS       NZ_JABFHW010000000   5026650 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain FSDTA-HCM-XY-14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABFHW000000000
VERSION     NZ_JABFHW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14260668
            Assembly: GCF_019802665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5026650)
  AUTHORS   Wang,C.
  TITLE     A new Illumina MiSeq high-throughput sequencing-based method for
            evaluating the composition of the Bacteroides community in the
            intestine using the rpsD gene sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5026650)
  AUTHORS   Wang,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2020) State Key Laboratory of Food Science and
            Technology, Jiangnan, Lihu 1800, Wuxi 214122, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABFHW000000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_JABFHW000000000.  This version of the project
            (01) has the accession number NZ_JABFHW010000000, and consists of
            sequences JABFHW010000001-JABFHW010000104.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. 2.3 OR MAY-2011
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019802665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:47:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,194
            CDSs (total)                      :: 4,110
            Genes (coding)                    :: 3,970
            CDSs (with protein)               :: 3,970
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 45 of 140
            Pseudo Genes (incomplete)         :: 101 of 140
            Pseudo Genes (internal stop)      :: 16 of 140
            Pseudo Genes (multiple problems)  :: 18 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5026650
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="FSDTA-HCM-XY-14"
                     /isolation_source="fecal sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China"
                     /collection_date="2019-01-10"
WGS         JABFHW010000001-JABFHW010000104
WGS_SCAFLD  NZ_JABFHW010000001-NZ_JABFHW010000104
//
LOCUS       NZ_JAFJBR010000000   4467472 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Providencia stuartii strain PRV00022, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFJBR000000000
VERSION     NZ_JAFJBR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17965016
            Assembly: GCF_017152365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Providencia stuartii
  ORGANISM  Providencia stuartii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Providencia.
REFERENCE   1  (bases 1 to 4467472)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Enhanced detection system for hospital associated transmission
            using whole genome sequencing surveillance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4467472)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) School of Medicine, University of
            Pittsburgh, 4200 Fifth Ave, Pittsburgh, PA 15260, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFJBR000000000.1.
            The Providencia stuartii whole genome shotgun (WGS) project has the
            project accession NZ_JAFJBR000000000.  This version of the project
            (01) has the accession number NZ_JAFJBR010000000, and consists of
            sequences JAFJBR010000001-JAFJBR010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 129x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017152365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:44:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,263
            CDSs (total)                      :: 4,186
            Genes (coding)                    :: 4,061
            CDSs (with protein)               :: 4,061
            Genes (RNA)                       :: 77
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 54 of 125
            Pseudo Genes (incomplete)         :: 86 of 125
            Pseudo Genes (internal stop)      :: 43 of 125
            Pseudo Genes (multiple problems)  :: 50 of 125
            CRISPR Arrays                     :: 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4467472
                     /organism="Providencia stuartii"
                     /mol_type="genomic DNA"
                     /strain="PRV00022"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:588"
                     /geo_loc_name="USA: Pittsburgh, Pennsylvania"
                     /lat_lon="40.44 N 79.97 W"
                     /collection_date="2019"
                     /collected_by="University of Pittsburgh Medical Center"
WGS         JAFJBR010000001-JAFJBR010000080
WGS_SCAFLD  NZ_JAFJBR010000001-NZ_JAFJBR010000080
//
LOCUS       NZ_WJPZ01000000      5909019 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain P12831, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WJPZ00000000
VERSION     NZ_WJPZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12289147
            Assembly: GCF_009898785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5909019)
  AUTHORS   Lacault,C., Briand,M., Jacques,M.A. and Darrasse,A.
  TITLE     Zucchini Vein Clearing Disease Is Caused by Several Lineages Within
            Pseudomonas syringae Species Complex
  JOURNAL   Phytopathology 110 (4), 744-757 (2020)
   PUBMED   31909688
REFERENCE   2  (bases 1 to 5909019)
  AUTHORS   Lacault,C., Briand,M., Jacques,M.-A. and Darrasse,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2019) IRHS (Institut de Recherche en Horticulture
            et Semences), INRA, 42 rue Georges Morel, Beaucouze F-49071, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WJPZ00000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_WJPZ00000000.  This version of the project
            (01) has the accession number NZ_WJPZ01000000, and consists of
            sequences WJPZ01000001-WJPZ01000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 204.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009898785.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:19:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,171
            CDSs (total)                      :: 5,103
            Genes (coding)                    :: 4,965
            CDSs (with protein)               :: 4,965
            Genes (RNA)                       :: 68
            rRNAs                             :: 4, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 40 of 138
            Pseudo Genes (incomplete)         :: 111 of 138
            Pseudo Genes (internal stop)      :: 21 of 138
            Pseudo Genes (multiple problems)  :: 30 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5909019
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="P12831"
                     /host="Cucurbita pepo subsp. pepo"
                     /db_xref="taxon:317"
                     /geo_loc_name="France"
                     /collection_date="2005"
WGS         WJPZ01000001-WJPZ01000073
WGS_SCAFLD  NZ_WJPZ01000001-NZ_WJPZ01000073
//
LOCUS       NZ_WJPQ01000000      5908014 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain P22, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WJPQ00000000
VERSION     NZ_WJPQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12288683
            Assembly: GCF_009898635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5908014)
  AUTHORS   Lacault,C., Briand,M., Jacques,M.A. and Darrasse,A.
  TITLE     Zucchini Vein Clearing Disease Is Caused by Several Lineages Within
            Pseudomonas syringae Species Complex
  JOURNAL   Phytopathology 110 (4), 744-757 (2020)
   PUBMED   31909688
REFERENCE   2  (bases 1 to 5908014)
  AUTHORS   Lacault,C., Briand,M., Jacques,M.-A. and Darrasse,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2019) IRHS (Institut de Recherche en Horticulture
            et Semences), INRA, 42 rue Georges Morel, Beaucouze F-49071, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WJPQ00000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_WJPQ00000000.  This version of the project
            (01) has the accession number NZ_WJPQ01000000, and consists of
            sequences WJPQ01000001-WJPQ01000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2018
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 182.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009898635.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,178
            CDSs (total)                      :: 5,111
            Genes (coding)                    :: 4,967
            CDSs (with protein)               :: 4,967
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 43 of 144
            Pseudo Genes (incomplete)         :: 117 of 144
            Pseudo Genes (internal stop)      :: 20 of 144
            Pseudo Genes (multiple problems)  :: 32 of 144
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5908014
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="P22"
                     /host="Cucurbita pepo subsp. pepo"
                     /db_xref="taxon:317"
                     /geo_loc_name="USA"
                     /collection_date="2009"
WGS         WJPQ01000001-WJPQ01000074
WGS_SCAFLD  NZ_WJPQ01000001-NZ_WJPQ01000074
//
LOCUS       NZ_JAJISX010000000   5895294 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain BRIP65014-b, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJISX000000000
VERSION     NZ_JAJISX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23013832
            Assembly: GCF_028526895.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5895294)
  AUTHORS   Djitro,N., Roach,R., Mann,R., Campbell,P.R., Rodoni,B. and
            Gambley,C.
  TITLE     Comparative genomics and genomic diversity of Pseudomonas syringae
            clade 2b-a in Australia
  JOURNAL   BMC Microbiol 22 (1), 278 (2022)
   PUBMED   36411421
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5895294)
  AUTHORS   Djitro,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2021) School of Applied Systems Biology, La Trobe
            University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3083, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJISX000000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_JAJISX000000000.  This version of the project
            (01) has the accession number NZ_JAJISX010000000, and consists of
            sequences JAJISX010000001-JAJISX010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028526895.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:58:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,164
            CDSs (total)                      :: 5,101
            Genes (coding)                    :: 4,969
            CDSs (with protein)               :: 4,969
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 40 of 132
            Pseudo Genes (incomplete)         :: 107 of 132
            Pseudo Genes (internal stop)      :: 21 of 132
            Pseudo Genes (multiple problems)  :: 32 of 132
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5895294
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="BRIP65014-b"
                     /isolation_source="leaf"
                     /host="Cucurbita pepo (Zucchini) var. Eva"
                     /db_xref="taxon:317"
                     /geo_loc_name="Australia: Bundaberg"
                     /collection_date="2016-06-13"
WGS         JAJISX010000001-JAJISX010000070
WGS_SCAFLD  NZ_JAJISX010000001-NZ_JAJISX010000070
//
LOCUS       NZ_JACBPW010000000   5026650 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain FSDTA11B14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACBPW000000000
VERSION     NZ_JACBPW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15186850
            Assembly: GCF_020827715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5026650)
  AUTHORS   Li,S., Wang,C., Zhang,C., Luo,Y., Cheng,Q., Yu,L. and Sun,Z.
  TITLE     Evaluation of the Effects of Different Bacteroides vulgatus Strains
            against DSS-Induced Colitis
  JOURNAL   J Immunol Res 2021, 9117805 (2021)
   PUBMED   34195297
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5026650)
  AUTHORS   Wang,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUN-2020) Food, Jiangnan University, Lihu 1800, Wuxi
            214122, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACBPW000000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_JACBPW000000000.  This version of the project
            (01) has the accession number NZ_JACBPW010000000, and consists of
            sequences JACBPW010000001-JACBPW010000104.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. 2.3 OR MAY-2011
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020827715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:48:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,194
            CDSs (total)                      :: 4,110
            Genes (coding)                    :: 3,970
            CDSs (with protein)               :: 3,970
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 140
            CDSs (without protein)            :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 45 of 140
            Pseudo Genes (incomplete)         :: 101 of 140
            Pseudo Genes (internal stop)      :: 16 of 140
            Pseudo Genes (multiple problems)  :: 18 of 140
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5026650
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="FSDTA11B14"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China: Shan Dong"
                     /collection_date="2018-10-10"
WGS         JACBPW010000001-JACBPW010000104
WGS_SCAFLD  NZ_JACBPW010000001-NZ_JACBPW010000104
//
LOCUS       NZ_JAFELX010000000   2265104 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Riemerella anatipestifer strain RCAD1097, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFELX000000000
VERSION     NZ_JAFELX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17817051
            Assembly: GCF_037861355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Riemerella anatipestifer
  ORGANISM  Riemerella anatipestifer
            Bacteria; Pseudomonadati; Bacteroidota; Flavobacteriia;
            Flavobacteriales; Weeksellaceae; Riemerella.
REFERENCE   1  (bases 1 to 2265104)
  AUTHORS   Yang,Z., Lu,J., Zhu,D. and Wang,M.
  TITLE     Adaptability characteristics of respiratory tract isolates of
            Riemerella anatipestifer
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2265104)
  AUTHORS   Yang,Z., Lu,J., Zhu,D. and Wang,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2021) College of Veterinary Medicine, Sichuan
            Agricultural University, No. 211, Huimin Road, Chengdu, Sichuan
            611130, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFELX000000000.1.
            The Riemerella anatipestifer whole genome shotgun (WGS) project has
            the project accession NZ_JAFELX000000000.  This version of the
            project (01) has the accession number NZ_JAFELX010000000, and
            consists of sequences JAFELX010000001-JAFELX010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 04-JAN-2021
            Assembly Method        :: SPAdes v. v3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037861355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:07:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,171
            CDSs (total)                      :: 2,125
            Genes (coding)                    :: 2,082
            CDSs (with protein)               :: 2,082
            Genes (RNA)                       :: 46
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 1 (5S, 16S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 10 of 43
            Pseudo Genes (incomplete)         :: 31 of 43
            Pseudo Genes (internal stop)      :: 7 of 43
            Pseudo Genes (multiple problems)  :: 4 of 43
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265104
                     /organism="Riemerella anatipestifer"
                     /mol_type="genomic DNA"
                     /strain="RCAD1097"
                     /isolation_source="throat"
                     /host="duck"
                     /db_xref="taxon:34085"
                     /geo_loc_name="China: Sichuan,Meishan"
                     /lat_lon="30.104026 N 103.865478 E"
                     /collection_date="2020-09-18"
                     /collected_by="Research Center of Avian Diseases, College
                     of Veterinary Medicine, Sichuan Agricultural University,
                     Chengdu, Sichuan, 611130, China"
WGS         JAFELX010000001-JAFELX010000040
WGS_SCAFLD  NZ_JAFELX010000001-NZ_JAFELX010000040
//
LOCUS       NZ_JACGEQ010000000   5091224 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:431, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACGEQ000000000
VERSION     NZ_JACGEQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660280
            Assembly: GCF_016949275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 5091224)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5091224)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGEQ000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGEQ000000000.  This version of the
            project (01) has the accession number NZ_JACGEQ010000000, and
            consists of sequences JACGEQ010000001-JACGEQ010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 132x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949275.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:47:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,571
            CDSs (total)                      :: 4,494
            Genes (coding)                    :: 4,446
            CDSs (with protein)               :: 4,446
            Genes (RNA)                       :: 77
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 14 of 48
            Pseudo Genes (incomplete)         :: 42 of 48
            Pseudo Genes (internal stop)      :: 7 of 48
            Pseudo Genes (multiple problems)  :: 11 of 48
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5091224
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:431"
                     /host="Insect"
                     /db_xref="taxon:180957"
                     /geo_loc_name="Netherlands"
                     /collection_date="2018"
                     /collected_by="Robert Vreeburg"
WGS         JACGEQ010000001-JACGEQ010000068
WGS_SCAFLD  NZ_JACGEQ010000001-NZ_JACGEQ010000068
//
LOCUS       NZ_CBBLCL010000000   2422613 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Rhodoferax sp. isolate
            PELAGICS-MAG-m2-bin112859-MEDDE-SM-14jul20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBLCL000000000
VERSION     NZ_CBBLCL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460661
            Assembly: GCF_964911865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Rhodoferax sp. (freshwater metagenome)
  ORGANISM  Rhodoferax sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Comamonadaceae; Rhodoferax.
REFERENCE   1  (bases 1 to 2422613)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBLCL000000000.1.
            The Rhodoferax sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBLCL000000000.  This version of the project
            (01) has the accession number NZ_CBBLCL010000000, and consists of
            sequences CBBLCL010000001-CBBLCL010000070.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964911865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:32:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,388
            CDSs (total)                      :: 2,349
            Genes (coding)                    :: 2,309
            CDSs (with protein)               :: 2,309
            Genes (RNA)                       :: 39
            tRNAs                             :: 37
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 2 of 40
            Pseudo Genes (incomplete)         :: 35 of 40
            Pseudo Genes (internal stop)      :: 4 of 40
            Pseudo Genes (multiple problems)  :: 1 of 40
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422613
                     /organism="Rhodoferax sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin112859-MEDDE-SM-14jul20."
                     /isolation_source="Medard lake"
                     /db_xref="taxon:50421"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-07-14"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBLCL010000001-CBBLCL010000070
WGS_SCAFLD  NZ_CBBLCL010000001-NZ_CBBLCL010000070
//
LOCUS       NZ_JACGEO010000000   4729904 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pectobacterium brasiliense strain NAK:434, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACGEO000000000
VERSION     NZ_JACGEO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15660283
            Assembly: GCF_016949135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pectobacterium brasiliense
  ORGANISM  Pectobacterium brasiliense
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Pectobacteriaceae; Pectobacterium.
REFERENCE   1  (bases 1 to 4729904)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     A pangenomic view of the genus Pectobacterium provides insights
            into genome organization, phylogeny, and virulence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4729904)
  AUTHORS   Jonkheer,E., Brankovics,B., Houwers,I., Van Der Wolf,J.,
            Bonants,P., Vreeburg,R., Bollema,R., De Haan,J., Berke,L., De
            Ridder,D., Smit,S. and Van Der Lee,T.A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2020) B.U. Biointeractions and Plant Health,
            Wageningen Plant Research, Droevendaalsesteeg 1, Wageningen 6708
            PB, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACGEO000000000.1.
            The Pectobacterium brasiliense whole genome shotgun (WGS) project
            has the project accession NZ_JACGEO000000000.  This version of the
            project (01) has the accession number NZ_JACGEO010000000, and
            consists of sequences JACGEO010000001-JACGEO010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 12
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 507x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016949135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:41:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,263
            CDSs (total)                      :: 4,181
            Genes (coding)                    :: 4,125
            CDSs (with protein)               :: 4,125
            Genes (RNA)                       :: 82
            rRNAs                             :: 4, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 21 of 56
            Pseudo Genes (incomplete)         :: 45 of 56
            Pseudo Genes (internal stop)      :: 13 of 56
            Pseudo Genes (multiple problems)  :: 18 of 56
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4729904
                     /organism="Pectobacterium brasiliense"
                     /mol_type="genomic DNA"
                     /strain="NAK:434"
                     /host="Insect"
                     /db_xref="taxon:180957"
                     /geo_loc_name="Netherlands"
                     /collection_date="2018"
                     /collected_by="Robert Vreeburg"
WGS         JACGEO010000001-JACGEO010000078
WGS_SCAFLD  NZ_JACGEO010000001-NZ_JACGEO010000078
//
LOCUS       NZ_JAHYLK010000000   5251977 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain BJH_99, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAHYLK000000000
VERSION     NZ_JAHYLK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20148086
            Assembly: GCF_021406345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5251977)
  AUTHORS   Wallace,M.J., Jean,S., Wallace,M.A., Carey-Ann,B.D. and Dantas,G.
  TITLE     Comparative genomics of Bacteroides fragilis group isolates reveals
            species-dependent resistance mechanisms and validates clinical
            tools for resistance prediction
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5251977)
  AUTHORS   Wallace,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JUL-2021) Pathology and Immunology, Washington
            University School of Medicine in St. Louis, 4515 McKinley Avenue,
            St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAHYLK000000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_JAHYLK000000000.  This version of the project
            (01) has the accession number NZ_JAHYLK010000000, and consists of
            sequences JAHYLK010000001-JAHYLK010000159.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 52x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021406345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:55:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,476
            CDSs (total)                      :: 4,402
            Genes (coding)                    :: 4,264
            CDSs (with protein)               :: 4,264
            Genes (RNA)                       :: 74
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 67
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 47 of 138
            Pseudo Genes (incomplete)         :: 93 of 138
            Pseudo Genes (internal stop)      :: 19 of 138
            Pseudo Genes (multiple problems)  :: 17 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5251977
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="BJH_99"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="USA: St. Louis, MO"
WGS         JAHYLK010000001-JAHYLK010000159
WGS_SCAFLD  NZ_JAHYLK010000001-NZ_JAHYLK010000159
//
LOCUS       NZ_JACBPS010000000   5190687 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain FBJS10K3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACBPS000000000
VERSION     NZ_JACBPS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15064826
            Assembly: GCF_020827685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5190687)
  AUTHORS   Li,S., Wang,C., Zhang,C., Luo,Y., Cheng,Q., Yu,L. and Sun,Z.
  TITLE     Evaluation of the Effects of Different Bacteroides vulgatus Strains
            against DSS-Induced Colitis
  JOURNAL   J Immunol Res 2021, 9117805 (2021)
   PUBMED   34195297
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5190687)
  AUTHORS   Wang,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAY-2020) Food, Jiangnan University, Lihu 1800, Wuxi
            214122, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACBPS000000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_JACBPS000000000.  This version of the project
            (01) has the accession number NZ_JACBPS010000000, and consists of
            sequences JACBPS010000001-JACBPS010000104.
            Bacteria and source DNA available from Jiangnan University.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: FALCON v. 2.3 OR MAY-2011
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_020827685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,383
            CDSs (total)                      :: 4,306
            Genes (coding)                    :: 4,154
            CDSs (with protein)               :: 4,154
            Genes (RNA)                       :: 77
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 44 of 152
            Pseudo Genes (incomplete)         :: 120 of 152
            Pseudo Genes (internal stop)      :: 19 of 152
            Pseudo Genes (multiple problems)  :: 23 of 152
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5190687
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="FBJS10K3"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China"
                     /collection_date="2018-10-10"
WGS         JACBPS010000001-JACBPS010000104
WGS_SCAFLD  NZ_JACBPS010000001-NZ_JACBPS010000104
//
LOCUS       NZ_JAKKXT010000000   5188029 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Phocaeicola vulgatus strain Bv5458, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKKXT000000000
VERSION     NZ_JAKKXT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25258028
            Assembly: GCF_021891345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Phocaeicola vulgatus
  ORGANISM  Phocaeicola vulgatus
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Phocaeicola.
REFERENCE   1  (bases 1 to 5188029)
  AUTHORS   Mingchao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2022) Chinese Center for Disease Control and
            Prevention, National Institute for Communicable Disease Control and
            Prevention, Changping, Beijing 102206, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKKXT000000000.1.
            The Phocaeicola vulgatus whole genome shotgun (WGS) project has the
            project accession NZ_JAKKXT000000000.  This version of the project
            (01) has the accession number NZ_JAKKXT010000000, and consists of
            sequences JAKKXT010000001-JAKKXT010000102.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021891345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:53:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,343
            CDSs (total)                      :: 4,263
            Genes (coding)                    :: 4,126
            CDSs (with protein)               :: 4,126
            Genes (RNA)                       :: 80
            rRNAs                             :: 4, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 44 of 137
            Pseudo Genes (incomplete)         :: 98 of 137
            Pseudo Genes (internal stop)      :: 18 of 137
            Pseudo Genes (multiple problems)  :: 18 of 137
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5188029
                     /organism="Phocaeicola vulgatus"
                     /mol_type="genomic DNA"
                     /strain="Bv5458"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:821"
                     /geo_loc_name="China: Guangzhou"
                     /collection_date="2018-10"
WGS         JAKKXT010000001-JAKKXT010000102
WGS_SCAFLD  NZ_JAKKXT010000001-NZ_JAKKXT010000102
//
LOCUS       NZ_CBCGIO010000000   3951738 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Rhodovarius sp. isolate
            PELAGICS-MAG-mu-bin021807-NVALM-SM-11aug21., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCGIO000000000
VERSION     NZ_CBCGIO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460536
            Assembly: GCF_965055215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Rhodovarius sp. (freshwater metagenome)
  ORGANISM  Rhodovarius sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Roseomonadaceae; Rhodovarius.
REFERENCE   1  (bases 1 to 3951738)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCGIO000000000.1.
            The Rhodovarius sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCGIO000000000.  This version of the project
            (01) has the accession number NZ_CBCGIO010000000, and consists of
            sequences CBCGIO010000001-CBCGIO010000174.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965055215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:41:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,872
            CDSs (total)                      :: 3,825
            Genes (coding)                    :: 3,771
            CDSs (with protein)               :: 3,771
            Genes (RNA)                       :: 47
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 4 of 54
            Pseudo Genes (incomplete)         :: 50 of 54
            Pseudo Genes (internal stop)      :: 3 of 54
            Pseudo Genes (multiple problems)  :: 3 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3951738
                     /organism="Rhodovarius sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-mu-bin021807-NVALM-SM-11aug21."
                     /isolation_source="Nohipalu Valgjarv lake"
                     /db_xref="taxon:2972673"
                     /environmental_sample
                     /geo_loc_name="Estonia"
                     /collection_date="2021-08-11"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCGIO010000001-CBCGIO010000174
WGS_SCAFLD  NZ_CBCGIO010000001-NZ_CBCGIO010000174
//
LOCUS       NZ_JAJPRM010000000   4041377 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain L00022968, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAJPRM000000000
VERSION     NZ_JAJPRM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23771448
            Assembly: GCF_022407695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4041377)
  AUTHORS   Simner,P.J., Musser,K.A., Mitchell,K., Wise,M.G., Lewis,S., Yee,R.,
            Bergman,Y., Good,C.E., Abdelhamed,A.M., Li,H., Laseman,E.M.,
            Sahm,D., Pitzer,K., Quan,J., Walker,G.T., Jacobs,M.R. and
            Rhoads,D.D.
  TITLE     Multicenter Evaluation of the Acuitas AMR Gene Panel for Detection
            of an Extended Panel of Antimicrobial Resistance Genes among
            Bacterial Isolates
  JOURNAL   J Clin Microbiol 60 (3), e0209821 (2022)
   PUBMED   35138924
REFERENCE   2  (bases 1 to 4041377)
  AUTHORS   Simner,P.J., Musser,K.A., Mitchell,K., Wise,M.G., Lewis,S., Yee,R.,
            Bergman,Y., Good,C.E., Abdelhamed,A.M., Li,H., Laseman,E.M.,
            Sahm,D., Pitzer,K., Quan,J., Walker,T.G., Jacobs,M.R. and Rhoads,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2021) Bioinformatics, Ares Genetics GmbH,
            Karl-Farkas-Gasse 18, Vienna 1030, Austria
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJPRM000000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JAJPRM000000000.  This version of the project
            (01) has the accession number NZ_JAJPRM010000000, and consists of
            sequences JAJPRM010000001-JAJPRM010000103.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Ridom SeqSphere+ v. 7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 163.9202888x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022407695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:03:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,774
            CDSs (total)                      :: 3,685
            Genes (coding)                    :: 3,625
            CDSs (with protein)               :: 3,625
            Genes (RNA)                       :: 89
            rRNAs                             :: 4, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 76
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 19 of 60
            Pseudo Genes (incomplete)         :: 41 of 60
            Pseudo Genes (internal stop)      :: 14 of 60
            Pseudo Genes (multiple problems)  :: 11 of 60
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4041377
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="L00022968"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /collected_by="Johns Hopkins University School of
                     Medicine, University Hospitals Cleveland Medical Center"
WGS         JAJPRM010000001-JAJPRM010000103
WGS_SCAFLD  NZ_JAJPRM010000001-NZ_JAJPRM010000103
//
LOCUS       NZ_JBNBOC010000000   4102200 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudooceanicola nitratireducens strain NEH7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNBOC000000000
VERSION     NZ_JBNBOC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47772560
            Assembly: GCF_049725135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudooceanicola nitratireducens
  ORGANISM  Pseudooceanicola nitratireducens
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Paracoccaceae; Pseudooceanicola.
REFERENCE   1  (bases 1 to 4102200)
  AUTHORS   Samson,J.S., Murphy,S., Rowley,D.C. and Gomez-Chiarri,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2025) Fisheries, Animal, and Veterinary Sciences,
            University of Rhode Island, 120 Flagg Rd. CBLS, Kingston, RI 02881,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNBOC000000000.1.
            The Pseudooceanicola nitratireducens whole genome shotgun (WGS)
            project has the project accession NZ_JBNBOC000000000.  This version
            of the project (01) has the accession number NZ_JBNBOC010000000,
            and consists of sequences JBNBOC010000001-JBNBOC010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2025
            Assembly Method        :: SPAdes v. JAN-2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 118.16x
            Sequencing Technology  :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049725135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:00:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,984
            CDSs (total)                      :: 3,932
            Genes (coding)                    :: 3,899
            CDSs (with protein)               :: 3,899
            Genes (RNA)                       :: 52
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 13 of 33
            Pseudo Genes (incomplete)         :: 20 of 33
            Pseudo Genes (internal stop)      :: 5 of 33
            Pseudo Genes (multiple problems)  :: 4 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102200
                     /organism="Pseudooceanicola nitratireducens"
                     /mol_type="genomic DNA"
                     /strain="NEH7"
                     /isolation_source="Larvae"
                     /host="Crassostrea virginica"
                     /db_xref="taxon:517719"
                     /lab_host="Marta Gomez-Chiarri"
                     /geo_loc_name="USA: Northeast"
                     /altitude="0 m"
                     /collection_date="2023"
                     /collected_by="Jaypee Samson"
                     /identified_by="Jaypee Samson"
WGS         JBNBOC010000001-JBNBOC010000016
WGS_SCAFLD  NZ_JBNBOC010000001-NZ_JBNBOC010000016
//
LOCUS       NZ_JBQUVJ010000000   4351121 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Ruegeria sp. S263, whole genome shotgun sequencing project.
ACCESSION   NZ_JBQUVJ000000000
VERSION     NZ_JBQUVJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50771690
            Assembly: GCF_056780525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Ruegeria sp. S263
  ORGANISM  Ruegeria sp. S263
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Roseobacteraceae; Ruegeria.
REFERENCE   1  (bases 1 to 4351121)
  AUTHORS   Lee,J.K., Kim,J.M., Choi,B.J., Bayburt,H. and Jeon,C.O.
  TITLE     Ruegeria sp. nov., isolated from Marine Algae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4351121)
  AUTHORS   Lee,J.K., Kim,J.M., Choi,B.J., Bayburt,H. and Jeon,C.O.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2025) life science, Chung-Ang university, 84,
            Heukseok-ro, Dongjak-gu, Seoul 06974, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBQUVJ000000000.1.
            The Ruegeria sp. S263 whole genome shotgun (WGS) project has the
            project accession NZ_JBQUVJ000000000.  This version of the project
            (01) has the accession number NZ_JBQUVJ010000000, and consists of
            sequences JBQUVJ010000001-JBQUVJ010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 23-AUG-2025
            Assembly Method        :: flye v. 2.9.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 55.0x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:49:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,252
            CDSs (total)                      :: 4,189
            Genes (coding)                    :: 4,157
            CDSs (with protein)               :: 4,157
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 11 of 32
            Pseudo Genes (incomplete)         :: 18 of 32
            Pseudo Genes (internal stop)      :: 7 of 32
            Pseudo Genes (multiple problems)  :: 4 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4351121
                     /organism="Ruegeria sp. S263"
                     /mol_type="genomic DNA"
                     /strain="S263"
                     /host="Marine algae"
                     /db_xref="taxon:3458248"
                     /geo_loc_name="South Korea: Namhae-gun, Gyeongsangnam-do"
                     /collection_date="2022-10"
WGS         JBQUVJ010000001-JBQUVJ010000003
WGS_SCAFLD  NZ_CM165558
WGS_SCAFLD  NZ_JBQUVJ010000002-NZ_JBQUVJ010000003
//
LOCUS       NZ_JAMSAG010000000   4013524 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain JZ56, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAMSAG000000000
VERSION     NZ_JAMSAG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28928623
            Assembly: GCF_029435375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4013524)
  AUTHORS   Ma,W.Q., Han,Y.Y., Zhou,L., Peng,W.Q., Mao,L.Y., Yang,X., Wang,Q.,
            Zhang,T.J., Wang,H.N. and Lei,C.W.
  TITLE     Contamination of Proteus mirabilis harbouring various clinically
            important antimicrobial resistance genes in retail meat and aquatic
            products from food markets in China
  JOURNAL   Front Microbiol 13, 1086800 (2022)
   PUBMED   36590410
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4013524)
  AUTHORS   Lei,C.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUN-2022) College of Life Sciences, Sichuan
            University, No. 29 Wangjiang Road, Chengdu 610064, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMSAG000000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JAMSAG000000000.  This version of the project
            (01) has the accession number NZ_JAMSAG010000000, and consists of
            sequences JAMSAG010000001-JAMSAG010000077.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAR-2022
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029435375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:48:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,735
            CDSs (total)                      :: 3,651
            Genes (coding)                    :: 3,597
            CDSs (with protein)               :: 3,597
            Genes (RNA)                       :: 84
            rRNAs                             :: 4, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 18 of 54
            Pseudo Genes (incomplete)         :: 43 of 54
            Pseudo Genes (internal stop)      :: 8 of 54
            Pseudo Genes (multiple problems)  :: 13 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4013524
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="JZ56"
                     /isolation_source="Pork meat"
                     /db_xref="taxon:584"
                     /geo_loc_name="China: Chengdu"
                     /lat_lon="30.64 N 104.09 E"
                     /collection_date="2022"
                     /collected_by="Chang-Wei Lei"
WGS         JAMSAG010000001-JAMSAG010000077
WGS_SCAFLD  NZ_JAMSAG010000001-NZ_JAMSAG010000077
//
LOCUS       NZ_JAMSAL010000000   3991146 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain JZ50, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAMSAL000000000
VERSION     NZ_JAMSAL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28928618
            Assembly: GCF_029435495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 3991146)
  AUTHORS   Ma,W.Q., Han,Y.Y., Zhou,L., Peng,W.Q., Mao,L.Y., Yang,X., Wang,Q.,
            Zhang,T.J., Wang,H.N. and Lei,C.W.
  TITLE     Contamination of Proteus mirabilis harbouring various clinically
            important antimicrobial resistance genes in retail meat and aquatic
            products from food markets in China
  JOURNAL   Front Microbiol 13, 1086800 (2022)
   PUBMED   36590410
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3991146)
  AUTHORS   Lei,C.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUN-2022) College of Life Sciences, Sichuan
            University, No. 29 Wangjiang Road, Chengdu 610064, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMSAL000000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JAMSAL000000000.  This version of the project
            (01) has the accession number NZ_JAMSAL010000000, and consists of
            sequences JAMSAL010000001-JAMSAL010000081.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-MAR-2022
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029435495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:46:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,734
            CDSs (total)                      :: 3,648
            Genes (coding)                    :: 3,587
            CDSs (with protein)               :: 3,587
            Genes (RNA)                       :: 86
            rRNAs                             :: 5, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 10 of 61
            Pseudo Genes (incomplete)         :: 51 of 61
            Pseudo Genes (internal stop)      :: 14 of 61
            Pseudo Genes (multiple problems)  :: 11 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3991146
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="JZ50"
                     /isolation_source="Chicken meat"
                     /db_xref="taxon:584"
                     /geo_loc_name="China: Chengdu"
                     /lat_lon="30.64 N 104.09 E"
                     /collection_date="2021"
                     /collected_by="Chang-Wei Lei"
WGS         JAMSAL010000001-JAMSAL010000081
WGS_SCAFLD  NZ_JAMSAL010000001-NZ_JAMSAL010000081
//
LOCUS       NZ_JAJISY010000000   5894999 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain BRIP65014-a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJISY000000000
VERSION     NZ_JAJISY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23013831
            Assembly: GCF_028526865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5894999)
  AUTHORS   Djitro,N., Roach,R., Mann,R., Campbell,P.R., Rodoni,B. and
            Gambley,C.
  TITLE     Comparative genomics and genomic diversity of Pseudomonas syringae
            clade 2b-a in Australia
  JOURNAL   BMC Microbiol 22 (1), 278 (2022)
   PUBMED   36411421
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5894999)
  AUTHORS   Djitro,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2021) School of Applied Systems Biology, La Trobe
            University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3083, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJISY000000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_JAJISY000000000.  This version of the project
            (01) has the accession number NZ_JAJISY010000000, and consists of
            sequences JAJISY010000001-JAJISY010000071.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028526865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:59:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,164
            CDSs (total)                      :: 5,101
            Genes (coding)                    :: 4,968
            CDSs (with protein)               :: 4,968
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 40 of 133
            Pseudo Genes (incomplete)         :: 108 of 133
            Pseudo Genes (internal stop)      :: 21 of 133
            Pseudo Genes (multiple problems)  :: 32 of 133
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5894999
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="BRIP65014-a"
                     /isolation_source="leaf"
                     /host="Cucurbita pepo (Zucchini) var. Rosa"
                     /db_xref="taxon:317"
                     /geo_loc_name="Australia: Bundaberg"
                     /collection_date="2016-06-13"
WGS         JAJISY010000001-JAJISY010000071
WGS_SCAFLD  NZ_JAJISY010000001-NZ_JAJISY010000071
//
LOCUS       NZ_JAEFYD010000000   3928642 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain PN-037-E1-U01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEFYD000000000
VERSION     NZ_JAEFYD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17038835
            Assembly: GCF_029124145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 3928642)
  AUTHORS   Thaenert,R.
  TITLE     The gut reservoir facilitates uropathogen persistence and in-host
            adaptation in UTIs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3928642)
  AUTHORS   Choi,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2020) Pathology and Immunology, Washington
            University in St. Louis School of Medicine, 660 S Euclid Ave, St.
            Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEFYD000000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JAEFYD000000000.  This version of the project
            (01) has the accession number NZ_JAEFYD010000000, and consists of
            sequences JAEFYD010000001-JAEFYD010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 120.680632461062x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029124145.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:53:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,638
            CDSs (total)                      :: 3,548
            Genes (coding)                    :: 3,489
            CDSs (with protein)               :: 3,489
            Genes (RNA)                       :: 90
            rRNAs                             :: 5, 2, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 5, 1, 10 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 13 of 59
            Pseudo Genes (incomplete)         :: 42 of 59
            Pseudo Genes (internal stop)      :: 13 of 59
            Pseudo Genes (multiple problems)  :: 8 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3928642
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PN-037-E1-U01"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /geo_loc_name="USA"
                     /lat_lon="39.95 N 75.19 W"
                     /collection_date="2018-12-24"
                     /collected_by="University of Pennsylvania"
WGS         JAEFYD010000001-JAEFYD010000063
WGS_SCAFLD  NZ_JAEFYD010000001-NZ_JAEFYD010000063
//
LOCUS       NZ_JAEFTL010000000   4039282 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Proteus mirabilis strain WU-023-E1-DxU, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAEFTL000000000
VERSION     NZ_JAEFTL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17039075
            Assembly: GCF_029118715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4039282)
  AUTHORS   Thaenert,R.
  TITLE     The gut reservoir facilitates uropathogen persistence and in-host
            adaptation in UTIs
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4039282)
  AUTHORS   Choi,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2020) Pathology and Immunology, Washington
            University in St. Louis School of Medicine, 660 S Euclid Ave, St.
            Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAEFTL000000000.1.
            The Proteus mirabilis whole genome shotgun (WGS) project has the
            project accession NZ_JAEFTL000000000.  This version of the project
            (01) has the accession number NZ_JAEFTL010000000, and consists of
            sequences JAEFTL010000001-JAEFTL010000069.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 88.8075719607012x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029118715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:54:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,802
            CDSs (total)                      :: 3,717
            Genes (coding)                    :: 3,659
            CDSs (with protein)               :: 3,659
            Genes (RNA)                       :: 85
            rRNAs                             :: 4, 1, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3, 6 (5S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 15 of 58
            Pseudo Genes (incomplete)         :: 42 of 58
            Pseudo Genes (internal stop)      :: 15 of 58
            Pseudo Genes (multiple problems)  :: 10 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4039282
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="WU-023-E1-DxU"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /geo_loc_name="USA"
                     /lat_lon="38.63 N 90.27 W"
                     /collection_date="2018-01-12"
                     /collected_by="Washington University"
WGS         JAEFTL010000001-JAEFTL010000069
WGS_SCAFLD  NZ_JAEFTL010000001-NZ_JAEFTL010000069
//
LOCUS       NZ_JAJISS010000000   5895781 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas syringae strain BRIP65019-a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJISS000000000
VERSION     NZ_JAJISS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23013837
            Assembly: GCF_028526665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas syringae
  ORGANISM  Pseudomonas syringae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 5895781)
  AUTHORS   Djitro,N., Roach,R., Mann,R., Campbell,P.R., Rodoni,B. and
            Gambley,C.
  TITLE     Comparative genomics and genomic diversity of Pseudomonas syringae
            clade 2b-a in Australia
  JOURNAL   BMC Microbiol 22 (1), 278 (2022)
   PUBMED   36411421
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5895781)
  AUTHORS   Djitro,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2021) School of Applied Systems Biology, La Trobe
            University, Plenty Rd & Kingsbury Dr, Bundoora, VIC 3083, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJISS000000000.1.
            The Pseudomonas syringae whole genome shotgun (WGS) project has the
            project accession NZ_JAJISS000000000.  This version of the project
            (01) has the accession number NZ_JAJISS010000000, and consists of
            sequences JAJISS010000001-JAJISS010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028526665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:57:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,170
            CDSs (total)                      :: 5,107
            Genes (coding)                    :: 4,969
            CDSs (with protein)               :: 4,969
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 40 of 138
            Pseudo Genes (incomplete)         :: 114 of 138
            Pseudo Genes (internal stop)      :: 20 of 138
            Pseudo Genes (multiple problems)  :: 32 of 138
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5895781
                     /organism="Pseudomonas syringae"
                     /mol_type="genomic DNA"
                     /strain="BRIP65019-a"
                     /isolation_source="crown"
                     /host="Cucurbita pepo (Zucchini) var. Eva"
                     /db_xref="taxon:317"
                     /geo_loc_name="Australia: Bundaberg"
                     /collection_date="2016-08-10"
WGS         JAJISS010000001-JAJISS010000072
WGS_SCAFLD  NZ_JAJISS010000001-NZ_JAJISS010000072
//
LOCUS       NZ_CDVRJK010000000   5215901 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Pedobacter agri isolate MarMAG_126477, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CDVRJK000000000
VERSION     NZ_CDVRJK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747283
            Assembly: GCF_977750795.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pedobacter agri (seawater metagenome)
  ORGANISM  Pedobacter agri
            Bacteria; Pseudomonadati; Bacteroidota; Sphingobacteriia;
            Sphingobacteriales; Sphingobacteriaceae; Pedobacter.
REFERENCE   1  (bases 1 to 5215901)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVRJK000000000.1.
            The Pedobacter agri whole genome shotgun (WGS) project has the
            project accession NZ_CDVRJK000000000.  This version of the project
            (01) has the accession number NZ_CDVRJK010000000, and consists of
            sequences CDVRJK010000001-CDVRJK010000011.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977750795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:17:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,583
            CDSs (total)                      :: 4,531
            Genes (coding)                    :: 4,517
            CDSs (with protein)               :: 4,517
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 4 of 14
            Pseudo Genes (incomplete)         :: 8 of 14
            Pseudo Genes (internal stop)      :: 3 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5215901
                     /organism="Pedobacter agri"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126477"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:454586"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-06"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVRJK010000001-CDVRJK010000011
WGS_SCAFLD  NZ_CDVRJK010000001-NZ_CDVRJK010000011
//
LOCUS       NZ_CDVSBA010000000   2600445 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Planktomarina temperata isolate MarMAG_070365, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVSBA000000000
VERSION     NZ_CDVSBA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120748482
            Assembly: GCF_977755395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Planktomarina temperata (seawater metagenome)
  ORGANISM  Planktomarina temperata
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Paracoccaceae; Planktomarina.
REFERENCE   1  (bases 1 to 2600445)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVSBA000000000.1.
            The Planktomarina temperata whole genome shotgun (WGS) project has
            the project accession NZ_CDVSBA000000000.  This version of the
            project (01) has the accession number NZ_CDVSBA010000000, and
            consists of sequences CDVSBA010000001-CDVSBA010000141.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977755395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:16:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,559
            CDSs (total)                      :: 2,528
            Genes (coding)                    :: 2,503
            CDSs (with protein)               :: 2,503
            Genes (RNA)                       :: 31
            tRNAs                             :: 28
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 4 of 25
            Pseudo Genes (incomplete)         :: 22 of 25
            Pseudo Genes (internal stop)      :: 1 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2600445
                     /organism="Planktomarina temperata"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_070365"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:1284658"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2012-01-17"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVSBA010000001-CDVSBA010000141
WGS_SCAFLD  NZ_CDVSBA010000001-NZ_CDVSBA010000141
//
LOCUS       NZ_CBCAAP010000000   1957544 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Polynucleobacter sp. isolate
            PELAGICS-MAG-x7-bin056079-GOSKE-SM-22jun22., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCAAP000000000
VERSION     NZ_CBCAAP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117457522
            Assembly: GCF_965012665.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Polynucleobacter sp. (freshwater metagenome)
  ORGANISM  Polynucleobacter sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Polynucleobacter.
REFERENCE   1  (bases 1 to 1957544)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCAAP000000000.1.
            The Polynucleobacter sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCAAP000000000.  This version of the project
            (01) has the accession number NZ_CBCAAP010000000, and consists of
            sequences CBCAAP010000001-CBCAAP010000018.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965012665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:18:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,059
            CDSs (total)                      :: 2,023
            Genes (coding)                    :: 2,002
            CDSs (with protein)               :: 2,002
            Genes (RNA)                       :: 36
            tRNAs                             :: 32
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 4 of 21
            Pseudo Genes (incomplete)         :: 17 of 21
            Pseudo Genes (internal stop)      :: 2 of 21
            Pseudo Genes (multiple problems)  :: 2 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957544
                     /organism="Polynucleobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-x7-bin056079-GOSKE-SM-22jun22."
                     /isolation_source="Gossenkollesee lake"
                     /db_xref="taxon:2029855"
                     /environmental_sample
                     /geo_loc_name="Austria"
                     /collection_date="2022-06-22"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCAAP010000001-CBCAAP010000018
WGS_SCAFLD  NZ_CBCAAP010000001-NZ_CBCAAP010000018
//
LOCUS       NZ_CDWBLK010000000   5212799 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Pedobacter agri isolate MarMAG_126479, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CDWBLK000000000
VERSION     NZ_CDWBLK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747247
            Assembly: GCF_977818875.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pedobacter agri (seawater metagenome)
  ORGANISM  Pedobacter agri
            Bacteria; Pseudomonadati; Bacteroidota; Sphingobacteriia;
            Sphingobacteriales; Sphingobacteriaceae; Pedobacter.
REFERENCE   1  (bases 1 to 5212799)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDWBLK000000000.1.
            The Pedobacter agri whole genome shotgun (WGS) project has the
            project accession NZ_CDWBLK000000000.  This version of the project
            (01) has the accession number NZ_CDWBLK010000000, and consists of
            sequences CDWBLK010000001-CDWBLK010000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977818875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:18:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,567
            CDSs (total)                      :: 4,513
            Genes (coding)                    :: 4,499
            CDSs (with protein)               :: 4,499
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 4 of 14
            Pseudo Genes (incomplete)         :: 8 of 14
            Pseudo Genes (internal stop)      :: 3 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5212799
                     /organism="Pedobacter agri"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126479"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:454586"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-06"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDWBLK010000001-CDWBLK010000010
WGS_SCAFLD  NZ_CDWBLK010000001-NZ_CDWBLK010000010
//
LOCUS       NZ_CDVSGD010000000   5210581 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Pedobacter agri isolate MarMAG_126476, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CDVSGD000000000
VERSION     NZ_CDVSGD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747243
            Assembly: GCF_977756695.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Pedobacter agri (seawater metagenome)
  ORGANISM  Pedobacter agri
            Bacteria; Pseudomonadati; Bacteroidota; Sphingobacteriia;
            Sphingobacteriales; Sphingobacteriaceae; Pedobacter.
REFERENCE   1  (bases 1 to 5210581)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVSGD000000000.1.
            The Pedobacter agri whole genome shotgun (WGS) project has the
            project accession NZ_CDVSGD000000000.  This version of the project
            (01) has the accession number NZ_CDVSGD010000000, and consists of
            sequences CDVSGD010000001-CDVSGD010000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977756695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:20:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,576
            CDSs (total)                      :: 4,520
            Genes (coding)                    :: 4,506
            CDSs (with protein)               :: 4,506
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 4 of 14
            Pseudo Genes (incomplete)         :: 8 of 14
            Pseudo Genes (internal stop)      :: 3 of 14
            Pseudo Genes (multiple problems)  :: 1 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5210581
                     /organism="Pedobacter agri"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126476"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:454586"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-05"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVSGD010000001-CDVSGD010000010
WGS_SCAFLD  NZ_CDVSGD010000001-NZ_CDVSGD010000010
//
LOCUS       NZ_CDWAQW010000000   2285076 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Planktomarina temperata isolate MarMAG_070366, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDWAQW000000000
VERSION     NZ_CDWAQW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120748486
            Assembly: GCF_977813535.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Planktomarina temperata (seawater metagenome)
  ORGANISM  Planktomarina temperata
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Paracoccaceae; Planktomarina.
REFERENCE   1  (bases 1 to 2285076)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDWAQW000000000.1.
            The Planktomarina temperata whole genome shotgun (WGS) project has
            the project accession NZ_CDWAQW000000000.  This version of the
            project (01) has the accession number NZ_CDWAQW010000000, and
            consists of sequences CDWAQW010000001-CDWAQW010000226.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977813535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:21:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,300
            CDSs (total)                      :: 2,278
            Genes (coding)                    :: 2,248
            CDSs (with protein)               :: 2,248
            Genes (RNA)                       :: 22
            tRNAs                             :: 19
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 1 of 30
            Pseudo Genes (incomplete)         :: 29 of 30
            Pseudo Genes (internal stop)      :: 0 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2285076
                     /organism="Planktomarina temperata"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_070366"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:1284658"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2013-02-06"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDWAQW010000001-CDWAQW010000226
WGS_SCAFLD  NZ_CDWAQW010000001-NZ_CDWAQW010000226
//
LOCUS       NZ_CBCISW010000000   2675724 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Phenylobacterium sp. isolate
            PELAGICS-MAG-x4-bin077337-BANYE-SM-15sep21., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCISW000000000
VERSION     NZ_CBCISW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460726
            Assembly: GCF_965071395.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Phenylobacterium sp. (freshwater metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Caulobacterales; Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2675724)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCISW000000000.1.
            The Phenylobacterium sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCISW000000000.  This version of the project
            (01) has the accession number NZ_CBCISW010000000, and consists of
            sequences CBCISW010000001-CBCISW010000017.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965071395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:30:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,618
            CDSs (total)                      :: 2,565
            Genes (coding)                    :: 2,548
            CDSs (with protein)               :: 2,548
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 2 of 17
            Pseudo Genes (incomplete)         :: 15 of 17
            Pseudo Genes (internal stop)      :: 0 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675724
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-x4-bin077337-BANYE-SM-15sep21."
                     /isolation_source="Banyoles lake"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /geo_loc_name="Spain"
                     /collection_date="2021-09-15"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCISW010000001-CBCISW010000017
WGS_SCAFLD  NZ_CBCISW010000001-NZ_CBCISW010000017
//
LOCUS       NZ_CBCFIM010000000   1956064 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Polynucleobacter sp. isolate
            PELAGICS-MAG-ms-bin012343-GOSKH-SM-21jul20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCFIM000000000
VERSION     NZ_CBCFIM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460593
            Assembly: GCF_965048555.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Polynucleobacter sp. (freshwater metagenome)
  ORGANISM  Polynucleobacter sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Burkholderiaceae; Polynucleobacter.
REFERENCE   1  (bases 1 to 1956064)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCFIM000000000.1.
            The Polynucleobacter sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCFIM000000000.  This version of the project
            (01) has the accession number NZ_CBCFIM010000000, and consists of
            sequences CBCFIM010000001-CBCFIM010000033.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965048555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:32:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,057
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,993
            CDSs (with protein)               :: 1,993
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 0 of 23
            Pseudo Genes (incomplete)         :: 22 of 23
            Pseudo Genes (internal stop)      :: 1 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956064
                     /organism="Polynucleobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-ms-bin012343-GOSKH-SM-21jul20."
                     /isolation_source="Gossenkollesee lake"
                     /db_xref="taxon:2029855"
                     /environmental_sample
                     /geo_loc_name="Austria"
                     /collection_date="2020-07-21"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCFIM010000001-CBCFIM010000033
WGS_SCAFLD  NZ_CBCFIM010000001-NZ_CBCFIM010000033
//
LOCUS       NZ_JBBPIW010000000   5729707 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Priestia aryabhattai strain FSL H7-0740, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBPIW000000000
VERSION     NZ_JBBPIW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25893907
            Assembly: GCF_038039225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Priestia aryabhattai
  ORGANISM  Priestia aryabhattai
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Priestia.
REFERENCE   1  (bases 1 to 5729707)
  AUTHORS   Kovac,J.
  TITLE     Bacilli Hybrid Assemblies
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5729707)
  AUTHORS   Kovac,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2024) Department of Food Science, Penn State, 437
            Rodney A. Erickson Food Science Building, University Park, PA
            16802, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBPIW000000000.1.
            The Priestia aryabhattai whole genome shotgun (WGS) project has the
            project accession NZ_JBBPIW000000000.  This version of the project
            (01) has the accession number NZ_JBBPIW010000000, and consists of
            sequences JBBPIW010000001-JBBPIW010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 357.7563974x
            Sequencing Technology  :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038039225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:11:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,976
            CDSs (total)                      :: 5,907
            Genes (coding)                    :: 5,811
            CDSs (with protein)               :: 5,811
            Genes (RNA)                       :: 69
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 36 of 96
            Pseudo Genes (incomplete)         :: 65 of 96
            Pseudo Genes (internal stop)      :: 21 of 96
            Pseudo Genes (multiple problems)  :: 22 of 96
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5729707
                     /organism="Priestia aryabhattai"
                     /mol_type="genomic DNA"
                     /strain="FSL H7-0740"
                     /isolation_source="haylage"
                     /db_xref="taxon:412384"
WGS         JBBPIW010000001-JBBPIW010000054
WGS_SCAFLD  NZ_JBBPIW010000001-NZ_JBBPIW010000054
//
LOCUS       NZ_JBNBLK010000000   5977892 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Peribacillus frigoritolerans strain DT69, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNBLK000000000
VERSION     NZ_JBNBLK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47884541
            Assembly: GCF_049726085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Peribacillus frigoritolerans
  ORGANISM  Peribacillus frigoritolerans
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Peribacillus.
REFERENCE   1  (bases 1 to 5977892)
  AUTHORS   Tellatin,D. and Rigali,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2025) InBioS - CIP, University of Liege, Allee du
            Six Aout, 13, Liege 4000, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNBLK000000000.1.
            The Peribacillus frigoritolerans whole genome shotgun (WGS) project
            has the project accession NZ_JBNBLK000000000.  This version of the
            project (01) has the accession number NZ_JBNBLK010000000, and
            consists of sequences JBNBLK010000001-JBNBLK010000185.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-JAN-2023
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 54.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049726085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:01:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,932
            CDSs (total)                      :: 5,847
            Genes (coding)                    :: 5,665
            CDSs (with protein)               :: 5,665
            Genes (RNA)                       :: 85
            rRNAs                             :: 8, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 5, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 91 of 182
            Pseudo Genes (incomplete)         :: 127 of 182
            Pseudo Genes (internal stop)      :: 31 of 182
            Pseudo Genes (multiple problems)  :: 57 of 182
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5977892
                     /organism="Peribacillus frigoritolerans"
                     /mol_type="genomic DNA"
                     /strain="DT69"
                     /isolation_source="Laboratory"
                     /db_xref="taxon:450367"
                     /geo_loc_name="Belgium: Liege"
                     /collection_date="2022-01-11"
WGS         JBNBLK010000001-JBNBLK010000185
WGS_SCAFLD  NZ_JBNBLK010000001-NZ_JBNBLK010000185
//
LOCUS       NZ_JBMVGM010000000   7086438 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Pseudomonas chlororaphis strain R212R1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMVGM000000000
VERSION     NZ_JBMVGM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN44109746
            Assembly: GCF_049534495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Pseudomonas chlororaphis
  ORGANISM  Pseudomonas chlororaphis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 7086438)
  AUTHORS   Kolytaite,A., Aleliunas,A., Kurgonaite,M., Paskeviciute,G.,
            Rakleviciute,S., Mazeikiene,I. and Frercks,B.
  TITLE     WGS of microbial antagonists against Monilinia spp.
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7086438)
  AUTHORS   Kolytaite,A., Aleliunas,A., Kurgonaite,M., Mazeikiene,I. and
            Frercks,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2025) Department of Orchard Plant Genetics and
            Biotechnology, Lithuanian Research Centre for Agriculture and
            Forestry, Kauno St. 30, Babtai LT-54333, Lithuania
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMVGM000000000.1.
            The Pseudomonas chlororaphis whole genome shotgun (WGS) project has
            the project accession NZ_JBMVGM000000000.  This version of the
            project (01) has the accession number NZ_JBMVGM010000000, and
            consists of sequences JBMVGM010000001-JBMVGM010000250.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-APR-2024
            Assembly Method        :: SPAdes v. v3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.04x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049534495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:57:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,594
            CDSs (total)                      :: 6,527
            Genes (coding)                    :: 6,367
            CDSs (with protein)               :: 6,367
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 27 of 160
            Pseudo Genes (incomplete)         :: 139 of 160
            Pseudo Genes (internal stop)      :: 14 of 160
            Pseudo Genes (multiple problems)  :: 18 of 160
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7086438
                     /organism="Pseudomonas chlororaphis"
                     /mol_type="genomic DNA"
                     /strain="R212R1"
                     /isolation_source="soil"
                     /host="Prunus domestica"
                     /db_xref="taxon:587753"
                     /geo_loc_name="Lithuania"
                     /collection_date="2024"
WGS         JBMVGM010000001-JBMVGM010000250
WGS_SCAFLD  NZ_JBMVGM010000001-NZ_JBMVGM010000250
//
LOCUS       NZ_CBADQQ010000000   5948303 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Prosthecobacter sp. isolate
            PELAGICS-MAG-m2-bin128821-ZLH-20nov18., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBADQQ000000000
VERSION     NZ_CBADQQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460655
            Assembly: GCF_964685485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Prosthecobacter sp. (freshwater metagenome)
  ORGANISM  Prosthecobacter sp.
            Bacteria; Pseudomonadati; Verrucomicrobiota; Verrucomicrobiia;
            Verrucomicrobiales; Verrucomicrobiaceae; Prosthecobacter.
REFERENCE   1  (bases 1 to 5948303)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBADQQ000000000.1.
            The Prosthecobacter sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBADQQ000000000.  This version of the project
            (01) has the accession number NZ_CBADQQ010000000, and consists of
            sequences CBADQQ010000001-CBADQQ010000266.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964685485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:06:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,989
            CDSs (total)                      :: 4,939
            Genes (coding)                    :: 4,859
            CDSs (with protein)               :: 4,859
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 2 of 80
            Pseudo Genes (incomplete)         :: 77 of 80
            Pseudo Genes (internal stop)      :: 4 of 80
            Pseudo Genes (multiple problems)  :: 3 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5948303
                     /organism="Prosthecobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin128821-ZLH-20nov18."
                     /isolation_source="Zlutice reservoir"
                     /db_xref="taxon:1965333"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2018-11-20"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBADQQ010000001-CBADQQ010000266
WGS_SCAFLD  NZ_CBADQQ010000001-NZ_CBADQQ010000266
//
LOCUS       NZ_FTXD01000000      4475604 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5488130, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTXD00000000
VERSION     NZ_FTXD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1967582
            Assembly: GCF_900158825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTXD00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTXD00000000.  This version of the project
            (01) has the accession number NZ_FTXD01000000, and consists of
            sequences FTXD01000001-FTXD01000370.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,740
            CDSs (total)                      :: 4,634
            Genes (coding)                    :: 4,064
            CDSs (with protein)               :: 4,064
            Genes (RNA)                       :: 106
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 7, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 570
            CDSs (without protein)            :: 570
            Pseudo Genes (ambiguous residues) :: 0 of 570
            Pseudo Genes (frameshifted)       :: 138 of 570
            Pseudo Genes (incomplete)         :: 394 of 570
            Pseudo Genes (internal stop)      :: 94 of 570
            Pseudo Genes (multiple problems)  :: 51 of 570
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4475604
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5488130"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Guatemala"
                     /collection_date="2012"
WGS         FTXD01000001-FTXD01000370
WGS_SCAFLD  NZ_FTXD01000001-NZ_FTXD01000370
//
LOCUS       NZ_FTWT01000000      4457526 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5488120, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTWT00000000
VERSION     NZ_FTWT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2056889
            Assembly: GCF_900158725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTWT00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTWT00000000.  This version of the project
            (01) has the accession number NZ_FTWT01000000, and consists of
            sequences FTWT01000001-FTWT01000366.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158725.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,721
            CDSs (total)                      :: 4,616
            Genes (coding)                    :: 4,052
            CDSs (with protein)               :: 4,052
            Genes (RNA)                       :: 105
            rRNAs                             :: 7, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 5, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 564
            CDSs (without protein)            :: 564
            Pseudo Genes (ambiguous residues) :: 0 of 564
            Pseudo Genes (frameshifted)       :: 134 of 564
            Pseudo Genes (incomplete)         :: 391 of 564
            Pseudo Genes (internal stop)      :: 93 of 564
            Pseudo Genes (multiple problems)  :: 49 of 564
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4457526
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5488120"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Guatemala"
                     /collection_date="2012"
WGS         FTWT01000001-FTWT01000366
WGS_SCAFLD  NZ_FTWT01000001-NZ_FTWT01000366
//
LOCUS       NZ_DBFJFE010000000   2410150 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate MAG8014, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DBFJFE000000000
VERSION     NZ_DBFJFE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46333054
            Sequence Read Archive: SRR16554652
            Assembly: GCF_048395425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2410150)
  AUTHORS   Olekhnovich,E.I. and Kanaeva,V.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-FEB-2025) genomic research and computational biology
            lab, Federal Research and Clinical Centre of Physical-Chemical
            Medicine, Malaya Pirogovskaya, Moscow 119160, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DBFJFE000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_DBFJFE000000000.  This version of the
            project (01) has the accession number NZ_DBFJFE010000000, and
            consists of sequences DBFJFE010000001-DBFJFE010000232.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048395425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:07:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,175
            CDSs (total)                      :: 2,119
            Genes (coding)                    :: 2,101
            CDSs (with protein)               :: 2,101
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 2 (5S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 1 of 18
            Pseudo Genes (incomplete)         :: 17 of 18
            Pseudo Genes (internal stop)      :: 0 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410150
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="MAG8014"
                     /isolation_source="gut"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="29.7604 N 95.3698 W"
                     /collection_date="2015-04/2019-01"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         DBFJFE010000001-DBFJFE010000232
WGS_SCAFLD  NZ_DBFJFE010000001-NZ_DBFJFE010000232
//
LOCUS       NZ_FUCJ01000000      4481324 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1433, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUCJ00000000
VERSION     NZ_FUCJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569915
            Assembly: GCF_900160185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUCJ00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUCJ00000000.  This version of the project
            (01) has the accession number NZ_FUCJ01000000, and consists of
            sequences FUCJ01000001-FUCJ01000379.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,753
            CDSs (total)                      :: 4,657
            Genes (coding)                    :: 4,088
            CDSs (with protein)               :: 4,088
            Genes (RNA)                       :: 96
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 569
            CDSs (without protein)            :: 569
            Pseudo Genes (ambiguous residues) :: 0 of 569
            Pseudo Genes (frameshifted)       :: 138 of 569
            Pseudo Genes (incomplete)         :: 395 of 569
            Pseudo Genes (internal stop)      :: 92 of 569
            Pseudo Genes (multiple problems)  :: 51 of 569
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4481324
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1433"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Argentina"
                     /collection_date="2010"
WGS         FUCJ01000001-FUCJ01000379
WGS_SCAFLD  NZ_FUCJ01000001-NZ_FUCJ01000379
//
LOCUS       NZ_CDRXVS010000000   2367353 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate SRR24315742_bin_14186, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CDRXVS000000000
VERSION     NZ_CDRXVS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120615794
            Sequence Read Archive: SRR24315742
            Assembly: GCF_977088315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2367353)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2025) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDRXVS000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CDRXVS000000000.  This version of the
            project (01) has the accession number NZ_CDRXVS010000000, and
            consists of sequences CDRXVS010000001-CDRXVS010000177.
            This is a Third Party Annotation (TPA) bin derived from the primary
            whole genome shotgun (WGS) data set SRP434700. This sample
            represents a Metagenome-Assembled Genome (MAG) from the metagenomic
            run SRR24315742.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977088315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:15:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,065
            CDSs (total)                      :: 2,034
            Genes (coding)                    :: 2,021
            CDSs (with protein)               :: 2,021
            Genes (RNA)                       :: 31
            tRNAs                             :: 27
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 13
            CDSs (without protein)            :: 13
            Pseudo Genes (ambiguous residues) :: 0 of 13
            Pseudo Genes (frameshifted)       :: 1 of 13
            Pseudo Genes (incomplete)         :: 11 of 13
            Pseudo Genes (internal stop)      :: 1 of 13
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2367353
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="SRR24315742_bin_14186"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Spain"
                     /collection_date="2017/2018"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CDRXVS010000001-CDRXVS010000177
WGS_SCAFLD  NZ_CDRXVS010000001-NZ_CDRXVS010000177
//
LOCUS       NZ_FUDA01000000      4718424 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1448, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUDA00000000
VERSION     NZ_FUDA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569938
            Assembly: GCF_900160335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUDA00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUDA00000000.  This version of the project
            (01) has the accession number NZ_FUDA01000000, and consists of
            sequences FUDA01000001-FUDA01000368.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:44:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,055
            CDSs (total)                      :: 4,957
            Genes (coding)                    :: 4,392
            CDSs (with protein)               :: 4,392
            Genes (RNA)                       :: 98
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 565
            CDSs (without protein)            :: 565
            Pseudo Genes (ambiguous residues) :: 0 of 565
            Pseudo Genes (frameshifted)       :: 131 of 565
            Pseudo Genes (incomplete)         :: 397 of 565
            Pseudo Genes (internal stop)      :: 90 of 565
            Pseudo Genes (multiple problems)  :: 49 of 565
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4718424
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1448"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2002"
WGS         FUDA01000001-FUDA01000368
WGS_SCAFLD  NZ_FUDA01000001-NZ_FUDA01000368
//
LOCUS       NZ_CAKXHM010000000   2343139 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate MTG247_bin.4.fa, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAKXHM000000000
VERSION     NZ_CAKXHM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13567488
            Sequence Read Archive: ERR8477562
            Assembly: GCF_934875325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2343139)
  AUTHORS   Kaakoush O,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2022) UNIVERSITY OF NEW SOUTH WALES, School of
            Medical Sciences, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKXHM000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CAKXHM000000000.  This version of the
            project (01) has the accession number NZ_CAKXHM010000000, and
            consists of sequences CAKXHM010000001-CAKXHM010000416.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934875325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:17:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,319
            CDSs (total)                      :: 2,277
            Genes (coding)                    :: 2,209
            CDSs (with protein)               :: 2,209
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 11 of 68
            Pseudo Genes (incomplete)         :: 59 of 68
            Pseudo Genes (internal stop)      :: 1 of 68
            Pseudo Genes (multiple problems)  :: 3 of 68
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343139
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="MTG247_bin.4.fa"
                     /isolation_source="human gut"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKXHM010000001-CAKXHM010000416
WGS_SCAFLD  NZ_CAKXHM010000001-NZ_CAKXHM010000416
//
LOCUS       NZ_FUEB01000000      4618738 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1477, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUEB00000000
VERSION     NZ_FUEB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569725
            Assembly: GCF_900160595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUEB00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUEB00000000.  This version of the project
            (01) has the accession number NZ_FUEB01000000, and consists of
            sequences FUEB01000001-FUEB01000348.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:42:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,892
            CDSs (total)                      :: 4,784
            Genes (coding)                    :: 4,223
            CDSs (with protein)               :: 4,223
            Genes (RNA)                       :: 108
            rRNAs                             :: 7, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 5, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 561
            CDSs (without protein)            :: 561
            Pseudo Genes (ambiguous residues) :: 0 of 561
            Pseudo Genes (frameshifted)       :: 133 of 561
            Pseudo Genes (incomplete)         :: 396 of 561
            Pseudo Genes (internal stop)      :: 87 of 561
            Pseudo Genes (multiple problems)  :: 50 of 561
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4618738
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1477"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2007"
WGS         FUEB01000001-FUEB01000348
WGS_SCAFLD  NZ_FUEB01000001-NZ_FUEB01000348
//
LOCUS       NZ_FTUI01000000      4585268 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461824, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTUI00000000
VERSION     NZ_FTUI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054480
            Assembly: GCF_900158105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTUI00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTUI00000000.  This version of the project
            (01) has the accession number NZ_FTUI01000000, and consists of
            sequences FTUI01000001-FTUI01000349.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:44:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,843
            CDSs (total)                      :: 4,735
            Genes (coding)                    :: 4,169
            CDSs (with protein)               :: 4,169
            Genes (RNA)                       :: 108
            rRNAs                             :: 6, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 4, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 566
            CDSs (without protein)            :: 566
            Pseudo Genes (ambiguous residues) :: 0 of 566
            Pseudo Genes (frameshifted)       :: 135 of 566
            Pseudo Genes (incomplete)         :: 396 of 566
            Pseudo Genes (internal stop)      :: 91 of 566
            Pseudo Genes (multiple problems)  :: 51 of 566
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4585268
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461824"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2010"
WGS         FTUI01000001-FTUI01000349
WGS_SCAFLD  NZ_FTUI01000001-NZ_FTUI01000349
//
LOCUS       NZ_FTUY01000000      4690911 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461840, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTUY00000000
VERSION     NZ_FTUY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054567
            Assembly: GCF_900158255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTUY00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTUY00000000.  This version of the project
            (01) has the accession number NZ_FTUY01000000, and consists of
            sequences FTUY01000001-FTUY01000345.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:43:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,972
            CDSs (total)                      :: 4,866
            Genes (coding)                    :: 4,303
            CDSs (with protein)               :: 4,303
            Genes (RNA)                       :: 106
            rRNAs                             :: 6, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 563
            CDSs (without protein)            :: 563
            Pseudo Genes (ambiguous residues) :: 0 of 563
            Pseudo Genes (frameshifted)       :: 133 of 563
            Pseudo Genes (incomplete)         :: 397 of 563
            Pseudo Genes (internal stop)      :: 89 of 563
            Pseudo Genes (multiple problems)  :: 51 of 563
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4690911
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461840"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Uruguay"
                     /collection_date="2005"
WGS         FTUY01000001-FTUY01000345
WGS_SCAFLD  NZ_FTUY01000001-NZ_FTUY01000345
//
LOCUS       NZ_JALFTH010000000   2149686 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate SUG992, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALFTH000000000
VERSION     NZ_JALFTH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26526216
            Assembly: GCF_022779325.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (pig gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2149686)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Metagenome-assembled genomes from swine fecal metagenomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2149686)
  AUTHORS   Holman,D.B. and Kommadath,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2022) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALFTH000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_JALFTH000000000.  This version of the
            project (01) has the accession number NZ_JALFTH010000000, and
            consists of sequences JALFTH010000001-JALFTH010000235.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-JUN-2021
            Assembly Method        :: MEGAHIT v. v. 1.29.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022779325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:17:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,959
            CDSs (total)                      :: 1,913
            Genes (coding)                    :: 1,886
            CDSs (with protein)               :: 1,886
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 0 of 27
            Pseudo Genes (incomplete)         :: 27 of 27
            Pseudo Genes (internal stop)      :: 0 of 27
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149686
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="SUG992"
                     /isolation_source="feces"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /altitude="850 m"
                     /collection_date="2019"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JALFTH010000001-JALFTH010000235
WGS_SCAFLD  NZ_JALFTH010000001-NZ_JALFTH010000235
//
LOCUS       NZ_CEVPTU010000000   2172642 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate ERR14205106_bin_87, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CEVPTU000000000
VERSION     NZ_CEVPTU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA121994784
            Sequence Read Archive: ERR14205106
            Assembly: GCF_982336985.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2172642)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVPTU000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CEVPTU000000000.  This version of the
            project (01) has the accession number NZ_CEVPTU010000000, and
            consists of sequences CEVPTU010000001-CEVPTU010000208.
            This is a Third Party Annotation (TPA) bin derived from the primary
            whole genome shotgun (WGS) data set ERP157308. This sample
            represents a Metagenome-Assembled Genome (MAG) from the metagenomic
            run ERR14205106.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982336985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:20:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,934
            CDSs (total)                      :: 1,896
            Genes (coding)                    :: 1,881
            CDSs (with protein)               :: 1,881
            Genes (RNA)                       :: 38
            tRNAs                             :: 34
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 0 of 15
            Pseudo Genes (incomplete)         :: 15 of 15
            Pseudo Genes (internal stop)      :: 2 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172642
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="ERR14205106_bin_87"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Italy"
                     /collection_date="2019"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVPTU010000001-CEVPTU010000208
WGS_SCAFLD  NZ_CEVPTU010000001-NZ_CEVPTU010000208
//
LOCUS       NZ_LIRM01000000      4763736 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain MN-01, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LIRM00000000
VERSION     NZ_LIRM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04009396
            Assembly: GCF_002237105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4763736)
  AUTHORS   Szeinbaum,N.H., Dichristina,T.J. and Vannberg,F.O.
  TITLE     Draft Genome Sequence of Shewanella algae strain MN-01
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4763736)
  AUTHORS   Szeinbaum,N.H., Dichristina,T.J. and Vannberg,F.O.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2015) Biology, Georgia Institute of Technology,
            311 Ferst Drive, Atlanta, GA 30332, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LIRM00000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_LIRM00000000.  This version of the project
            (01) has the accession number NZ_LIRM01000000, and consists of
            sequences LIRM01000001-LIRM01000102.
            
            Strain originally designated as MN01.
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: AUG-2015
            Assembly Method        :: CLC Genomics Workbench v. 8.0.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 130.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002237105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:48:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,252
            CDSs (total)                      :: 4,175
            Genes (coding)                    :: 4,130
            CDSs (with protein)               :: 4,130
            Genes (RNA)                       :: 77
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 12 of 45
            Pseudo Genes (incomplete)         :: 37 of 45
            Pseudo Genes (internal stop)      :: 5 of 45
            Pseudo Genes (multiple problems)  :: 7 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4763736
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="MN-01"
                     /isolation_source="salt marsh sediment"
                     /db_xref="taxon:38313"
                     /geo_loc_name="USA: GA, Skidaway Island"
                     /collection_date="2010-05-20"
                     /identified_by="Nadia Szeinbaum"
WGS         LIRM01000001-LIRM01000102
WGS_SCAFLD  NZ_LIRM01000001-NZ_LIRM01000102
//
LOCUS       NZ_CAKXQE010000000   2308369 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate MTG238_bin.3.fa, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAKXQE000000000
VERSION     NZ_CAKXQE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA13566996
            Sequence Read Archive: ERR8477571
            Assembly: GCF_934879825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2308369)
  AUTHORS   Kaakoush O,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2022) UNIVERSITY OF NEW SOUTH WALES, School of
            Medical Sciences, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAKXQE000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CAKXQE000000000.  This version of the
            project (01) has the accession number NZ_CAKXQE010000000, and
            consists of sequences CAKXQE010000001-CAKXQE010000351.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_934879825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:20:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,208
            CDSs (total)                      :: 2,179
            Genes (coding)                    :: 2,134
            CDSs (with protein)               :: 2,134
            Genes (RNA)                       :: 29
            tRNAs                             :: 25
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 0 of 45
            Pseudo Genes (incomplete)         :: 44 of 45
            Pseudo Genes (internal stop)      :: 2 of 45
            Pseudo Genes (multiple problems)  :: 1 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308369
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="MTG238_bin.3.fa"
                     /isolation_source="human gut"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CAKXQE010000001-CAKXQE010000351
WGS_SCAFLD  NZ_CAKXQE010000001-NZ_CAKXQE010000351
//
LOCUS       NZ_FTTZ01000000      4616814 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461816, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTTZ00000000
VERSION     NZ_FTTZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054474
            Assembly: GCF_900157995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTTZ00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTTZ00000000.  This version of the project
            (01) has the accession number NZ_FTTZ01000000, and consists of
            sequences FTTZ01000001-FTTZ01000364.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900157995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:44:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,888
            CDSs (total)                      :: 4,782
            Genes (coding)                    :: 4,222
            CDSs (with protein)               :: 4,222
            Genes (RNA)                       :: 106
            rRNAs                             :: 6, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 1, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 560
            CDSs (without protein)            :: 560
            Pseudo Genes (ambiguous residues) :: 0 of 560
            Pseudo Genes (frameshifted)       :: 134 of 560
            Pseudo Genes (incomplete)         :: 388 of 560
            Pseudo Genes (internal stop)      :: 91 of 560
            Pseudo Genes (multiple problems)  :: 48 of 560
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4616814
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461816"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2008"
WGS         FTTZ01000001-FTTZ01000364
WGS_SCAFLD  NZ_FTTZ01000001-NZ_FTTZ01000364
//
LOCUS       NZ_CEVEPY010000000   2354360 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate ERR12764757_bin_14520, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEVEPY000000000
VERSION     NZ_CEVEPY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA121952758
            Sequence Read Archive: ERR12764757
            Assembly: GCF_982260965.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2354360)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVEPY000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CEVEPY000000000.  This version of the
            project (01) has the accession number NZ_CEVEPY010000000, and
            consists of sequences CEVEPY010000001-CEVEPY010000181.
            This is a Third Party Annotation (TPA) bin derived from the primary
            whole genome shotgun (WGS) data set ERP158559. This sample
            represents a Metagenome-Assembled Genome (MAG) from the metagenomic
            run ERR12764757.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982260965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:18:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,083
            CDSs (total)                      :: 2,041
            Genes (coding)                    :: 2,029
            CDSs (with protein)               :: 2,029
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 11 of 12
            Pseudo Genes (internal stop)      :: 0 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354360
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="ERR12764757_bin_14520"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Austria"
                     /collection_date="2020-01-01"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVEPY010000001-CEVEPY010000181
WGS_SCAFLD  NZ_CEVEPY010000001-NZ_CEVEPY010000181
//
LOCUS       NZ_FUCX01000000      4730932 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1446, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUCX00000000
VERSION     NZ_FUCX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569776
            Assembly: GCF_900160315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUCX00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUCX00000000.  This version of the project
            (01) has the accession number NZ_FUCX01000000, and consists of
            sequences FUCX01000001-FUCX01000355.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:47:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,078
            CDSs (total)                      :: 4,973
            Genes (coding)                    :: 4,409
            CDSs (with protein)               :: 4,409
            Genes (RNA)                       :: 105
            rRNAs                             :: 7, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 1, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 564
            CDSs (without protein)            :: 564
            Pseudo Genes (ambiguous residues) :: 0 of 564
            Pseudo Genes (frameshifted)       :: 131 of 564
            Pseudo Genes (incomplete)         :: 399 of 564
            Pseudo Genes (internal stop)      :: 91 of 564
            Pseudo Genes (multiple problems)  :: 52 of 564
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4730932
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1446"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Argentina"
                     /collection_date="2010"
WGS         FUCX01000001-FUCX01000355
WGS_SCAFLD  NZ_FUCX01000001-NZ_FUCX01000355
//
LOCUS       NZ_DBGFUE010000000   2291374 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate MAG10059, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DBGFUE000000000
VERSION     NZ_DBGFUE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46335335
            Sequence Read Archive: SRR23364197
            Assembly: GCF_048532365.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2291374)
  AUTHORS   Olekhnovich,E.I. and Kanaeva,V.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-FEB-2025) genomic research and computational biology
            lab, Federal Research and Clinical Centre of Physical-Chemical
            Medicine, Malaya Pirogovskaya, Moscow 119160, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DBGFUE000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_DBGFUE000000000.  This version of the
            project (01) has the accession number NZ_DBGFUE010000000, and
            consists of sequences DBGFUE010000001-DBGFUE010000298.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048532365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:21:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,048
            CDSs (total)                      :: 2,011
            Genes (coding)                    :: 1,990
            CDSs (with protein)               :: 1,990
            Genes (RNA)                       :: 37
            tRNAs                             :: 32
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 21
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 21
            Pseudo Genes (frameshifted)       :: 0 of 21
            Pseudo Genes (incomplete)         :: 20 of 21
            Pseudo Genes (internal stop)      :: 1 of 21
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291374
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="MAG10059"
                     /isolation_source="gut"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Canada"
                     /lat_lon="45.51 N 73.56 W"
                     /collection_date="2023-01-20"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         DBGFUE010000001-DBGFUE010000298
WGS_SCAFLD  NZ_DBGFUE010000001-NZ_DBGFUE010000298
//
LOCUS       NZ_FUCE01000000      4598649 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1426, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUCE00000000
VERSION     NZ_FUCE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569870
            Assembly: GCF_900160115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUCE00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUCE00000000.  This version of the project
            (01) has the accession number NZ_FUCE01000000, and consists of
            sequences FUCE01000001-FUCE01000386.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:45:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,905
            CDSs (total)                      :: 4,809
            Genes (coding)                    :: 4,238
            CDSs (with protein)               :: 4,238
            Genes (RNA)                       :: 96
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 571
            CDSs (without protein)            :: 571
            Pseudo Genes (ambiguous residues) :: 0 of 571
            Pseudo Genes (frameshifted)       :: 136 of 571
            Pseudo Genes (incomplete)         :: 396 of 571
            Pseudo Genes (internal stop)      :: 94 of 571
            Pseudo Genes (multiple problems)  :: 50 of 571
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4598649
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1426"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Argentina"
                     /collection_date="2007"
WGS         FUCE01000001-FUCE01000386
WGS_SCAFLD  NZ_FUCE01000001-NZ_FUCE01000386
//
LOCUS       NZ_DBGDQI010000000   2362123 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate MAG12382, whole genome shotgun
            sequencing project.
ACCESSION   NZ_DBGDQI000000000
VERSION     NZ_DBGDQI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46337722
            Sequence Read Archive: SRR5930534
            Assembly: GCF_048345035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2362123)
  AUTHORS   Olekhnovich,E.I. and Kanaeva,V.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-FEB-2025) genomic research and computational biology
            lab, Federal Research and Clinical Centre of Physical-Chemical
            Medicine, Malaya Pirogovskaya, Moscow 119160, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            DBGDQI000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_DBGDQI000000000.  This version of the
            project (01) has the accession number NZ_DBGDQI010000000, and
            consists of sequences DBGDQI010000001-DBGDQI010000191.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 1x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048345035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:25:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,099
            CDSs (total)                      :: 2,055
            Genes (coding)                    :: 2,031
            CDSs (with protein)               :: 2,031
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 2 of 24
            Pseudo Genes (incomplete)         :: 23 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362123
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="MAG12382"
                     /isolation_source="gut"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="32.8094 N 96.8365 W"
                     /collection_date="2016-10-11"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         DBGDQI010000001-DBGDQI010000191
WGS_SCAFLD  NZ_DBGDQI010000001-NZ_DBGDQI010000191
//
LOCUS       NZ_FUGH01000000      4645833 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1460, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUGH00000000
VERSION     NZ_FUGH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA954713
            Assembly: GCF_900163485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUGH00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUGH00000000.  This version of the project
            (01) has the accession number NZ_FUGH01000000, and consists of
            sequences FUGH01000001-FUGH01000370.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900163485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:51:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,941
            CDSs (total)                      :: 4,841
            Genes (coding)                    :: 4,280
            CDSs (with protein)               :: 4,280
            Genes (RNA)                       :: 100
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 561
            CDSs (without protein)            :: 561
            Pseudo Genes (ambiguous residues) :: 0 of 561
            Pseudo Genes (frameshifted)       :: 132 of 561
            Pseudo Genes (incomplete)         :: 391 of 561
            Pseudo Genes (internal stop)      :: 88 of 561
            Pseudo Genes (multiple problems)  :: 47 of 561
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4645833
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1460"
                     /isolation_source="stool"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2004"
WGS         FUGH01000001-FUGH01000370
WGS_SCAFLD  NZ_FUGH01000001-NZ_FUGH01000370
//
LOCUS       NZ_FUEC01000000      4625262 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1478, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUEC00000000
VERSION     NZ_FUEC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569704
            Assembly: GCF_900160615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUEC00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUEC00000000.  This version of the project
            (01) has the accession number NZ_FUEC01000000, and consists of
            sequences FUEC01000001-FUEC01000358.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160615.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:14:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,914
            CDSs (total)                      :: 4,811
            Genes (coding)                    :: 4,243
            CDSs (with protein)               :: 4,243
            Genes (RNA)                       :: 103
            rRNAs                             :: 7, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 5, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 568
            CDSs (without protein)            :: 568
            Pseudo Genes (ambiguous residues) :: 0 of 568
            Pseudo Genes (frameshifted)       :: 133 of 568
            Pseudo Genes (incomplete)         :: 399 of 568
            Pseudo Genes (internal stop)      :: 89 of 568
            Pseudo Genes (multiple problems)  :: 48 of 568
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4625262
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1478"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2007"
WGS         FUEC01000001-FUEC01000358
WGS_SCAFLD  NZ_FUEC01000001-NZ_FUEC01000358
//
LOCUS       NZ_JAXEGB010000000   2164049 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate SUG2980, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAXEGB000000000
VERSION     NZ_JAXEGB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37948757
            Assembly: GCF_034103245.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (pig gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2164049)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     MAGs from fecal, vaginal, and milk samples from sows and piglets
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2164049)
  AUTHORS   Holman,D.B., Kommadath,A. and Gzyl,K.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-NOV-2023) Lacombe Research and Development Centre,
            Agriculture and Agri-Food Canada, 6000 C & E Trail, Lacombe, AB T4L
            1W1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAXEGB000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_JAXEGB000000000.  This version of the
            project (01) has the accession number NZ_JAXEGB010000000, and
            consists of sequences JAXEGB010000001-JAXEGB010000272.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: MEGAHIT v. 1.2.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.5123549x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_034103245.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:24:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,005
            CDSs (total)                      :: 1,948
            Genes (coding)                    :: 1,916
            CDSs (with protein)               :: 1,916
            Genes (RNA)                       :: 57
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 1 of 32
            Pseudo Genes (incomplete)         :: 32 of 32
            Pseudo Genes (internal stop)      :: 0 of 32
            Pseudo Genes (multiple problems)  :: 1 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164049
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="SUG2980"
                     /isolation_source="feces"
                     /host="swine"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Canada: Lacombe"
                     /lat_lon="52.4685 N 113.7307 W"
                     /collection_date="2020"
                     /metagenome_source="pig gut metagenome"
                     /metagenomic
WGS         JAXEGB010000001-JAXEGB010000272
WGS_SCAFLD  NZ_JAXEGB010000001-NZ_JAXEGB010000272
//
LOCUS       NZ_CEVMXC010000000   2400870 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate SRR16124243_bin_9551, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CEVMXC000000000
VERSION     NZ_CEVMXC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA121973179
            Sequence Read Archive: SRR16124243
            Assembly: GCF_982317415.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2400870)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2026) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CEVMXC000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CEVMXC000000000.  This version of the
            project (01) has the accession number NZ_CEVMXC010000000, and
            consists of sequences CEVMXC010000001-CEVMXC010000452.
            This is a Third Party Annotation (TPA) bin derived from the primary
            whole genome shotgun (WGS) data set SRP336949. This sample
            represents a Metagenome-Assembled Genome (MAG) from the metagenomic
            run SRR16124243.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_982317415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:24:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,227
            CDSs (total)                      :: 2,200
            Genes (coding)                    :: 2,165
            CDSs (with protein)               :: 2,165
            Genes (RNA)                       :: 27
            tRNAs                             :: 22
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 2 of 35
            Pseudo Genes (incomplete)         :: 30 of 35
            Pseudo Genes (internal stop)      :: 4 of 35
            Pseudo Genes (multiple problems)  :: 1 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400870
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="SRR16124243_bin_9551"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="China"
                     /collection_date="2018-01-01"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CEVMXC010000001-CEVMXC010000452
WGS_SCAFLD  NZ_CEVMXC010000001-NZ_CEVMXC010000452
//
LOCUS       NZ_QWSV01000000      4917633 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella boydii strain DMB SH20032, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QWSV00000000
VERSION     NZ_QWSV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07974670
            Assembly: GCF_003572455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4917633)
  AUTHORS   Gangiredla,J., Mammel,M.K., Lacher,D.W., Tartera,C., Jackson,S.A.,
            Patel,I.R., Elkins,C.A. and Mukherjee,A.
  TITLE     Draft Genome Sequences of 72 Isolates from All Four Species of
            Shigella
  JOURNAL   Microbiol Resour Announc 7 (21), e01399-18 (2018)
   PUBMED   30533843
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4917633)
  AUTHORS   Gangiredla,J., Mammel,M.K., Lacher,D.W., Tartera,C., Jackson,S.A.,
            Patel,I.R., Elkins,C.A. and Mukherjee,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) CFSAN-ORS-DM-MMSB, US Food and Drug
            Administration, 5100 Paint Branch Parkway, College Park, MD 20740,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QWSV00000000.1.
            The Shigella boydii whole genome shotgun (WGS) project has the
            project accession NZ_QWSV00000000.  This version of the project
            (01) has the accession number NZ_QWSV01000000, and consists of
            sequences QWSV01000001-QWSV01000456.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 181x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003572455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,112
            CDSs (total)                      :: 5,040
            Genes (coding)                    :: 4,341
            CDSs (with protein)               :: 4,341
            Genes (RNA)                       :: 72
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 699
            CDSs (without protein)            :: 699
            Pseudo Genes (ambiguous residues) :: 0 of 699
            Pseudo Genes (frameshifted)       :: 247 of 699
            Pseudo Genes (incomplete)         :: 384 of 699
            Pseudo Genes (internal stop)      :: 153 of 699
            Pseudo Genes (multiple problems)  :: 78 of 699
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4917633
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /strain="DMB SH20032"
                     /serotype="SB9:H14"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /geo_loc_name="USA"
                     /lat_lon="39.04 N 76.64 W"
                     /collection_date="1988-07-01"
                     /collected_by="Walter Reed Army Medical Center"
                     /group="Shigella 2"
WGS         QWSV01000001-QWSV01000456
WGS_SCAFLD  NZ_QWSV01000001-NZ_QWSV01000456
//
LOCUS       NZ_CDXCTC010000000   2290979 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate ERR2726406_bin_14581, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CDXCTC000000000
VERSION     NZ_CDXCTC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120855678
            Sequence Read Archive: ERR2726406
            Assembly: GCF_978011335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq; TPA:assembly.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 2290979)
  CONSRTM   EMBL-EBI Metagenomics Team
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2025) EBI-EMG, Wellcome Genome Campus, CB10 1SD,
            United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDXCTC000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_CDXCTC000000000.  This version of the
            project (01) has the accession number NZ_CDXCTC010000000, and
            consists of sequences CDXCTC010000001-CDXCTC010000238.
            This is a Third Party Annotation (TPA) bin derived from the primary
            whole genome shotgun (WGS) data set ERP110064. This sample
            represents a Metagenome-Assembled Genome (MAG) from the metagenomic
            run ERR2726406.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_978011335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:24:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,025
            CDSs (total)                      :: 1,989
            Genes (coding)                    :: 1,980
            CDSs (with protein)               :: 1,980
            Genes (RNA)                       :: 36
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 9
            CDSs (without protein)            :: 9
            Pseudo Genes (ambiguous residues) :: 0 of 9
            Pseudo Genes (frameshifted)       :: 2 of 9
            Pseudo Genes (incomplete)         :: 7 of 9
            Pseudo Genes (internal stop)      :: 0 of 9
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290979
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="ERR2726406_bin_14581"
                     /isolation_source="human gut metagenome"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="Germany"
                     /collection_date="2013/2016"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         CDXCTC010000001-CDXCTC010000238
WGS_SCAFLD  NZ_CDXCTC010000001-NZ_CDXCTC010000238
//
LOCUS       NZ_FTTY01000000      4617533 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain 2090STDY5461814, whole genome shotgun
            sequencing project.
ACCESSION   NZ_FTTY00000000
VERSION     NZ_FTTY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA2054472
            Assembly: GCF_900158015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FTTY00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FTTY00000000.  This version of the project
            (01) has the accession number NZ_FTTY01000000, and consists of
            sequences FTTY01000001-FTTY01000352.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900158015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:25:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,894
            CDSs (total)                      :: 4,786
            Genes (coding)                    :: 4,221
            CDSs (with protein)               :: 4,221
            Genes (RNA)                       :: 108
            rRNAs                             :: 7, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 4 (5S, 16S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 565
            CDSs (without protein)            :: 565
            Pseudo Genes (ambiguous residues) :: 0 of 565
            Pseudo Genes (frameshifted)       :: 136 of 565
            Pseudo Genes (incomplete)         :: 395 of 565
            Pseudo Genes (internal stop)      :: 89 of 565
            Pseudo Genes (multiple problems)  :: 49 of 565
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4617533
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="2090STDY5461814"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2008"
WGS         FTTY01000001-FTTY01000352
WGS_SCAFLD  NZ_FTTY01000001-NZ_FTTY01000352
//
LOCUS       NZ_FUDJ01000000      4625692 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1456, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUDJ00000000
VERSION     NZ_FUDJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569819
            Assembly: GCF_900160415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUDJ00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUDJ00000000.  This version of the project
            (01) has the accession number NZ_FUDJ01000000, and consists of
            sequences FUDJ01000001-FUDJ01000353.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,917
            CDSs (total)                      :: 4,814
            Genes (coding)                    :: 4,252
            CDSs (with protein)               :: 4,252
            Genes (RNA)                       :: 103
            rRNAs                             :: 6, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 562
            CDSs (without protein)            :: 562
            Pseudo Genes (ambiguous residues) :: 0 of 562
            Pseudo Genes (frameshifted)       :: 133 of 562
            Pseudo Genes (incomplete)         :: 394 of 562
            Pseudo Genes (internal stop)      :: 89 of 562
            Pseudo Genes (multiple problems)  :: 50 of 562
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4625692
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1456"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2003"
WGS         FUDJ01000001-FUDJ01000353
WGS_SCAFLD  NZ_FUDJ01000001-NZ_FUDJ01000353
//
LOCUS       NZ_JBKTGU010000000   3705731 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Ruminococcus callidus isolate 19-1_67, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBKTGU000000000
VERSION     NZ_JBKTGU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN43245961
            Sequence Read Archive: SRR31671744
            Assembly: GCF_047240565.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Ruminococcus callidus (human gut metagenome)
  ORGANISM  Ruminococcus callidus
            Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales;
            Oscillospiraceae; Ruminococcus.
REFERENCE   1  (bases 1 to 3705731)
  AUTHORS   Sawhney,S., Thanert,R., Thanert,A., Hall-Moore,C., Ndao,M.,
            Mahmud,B., Warner,B., Tarr,P.I. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2024) Center for Genome Sciences, Washington
            University in Saint Louis, 1397 Whispering Oaks Way, Pleasanton, CA
            94566, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBKTGU000000000.1.
            The Ruminococcus callidus whole genome shotgun (WGS) project has
            the project accession NZ_JBKTGU000000000.  This version of the
            project (01) has the accession number NZ_JBKTGU010000000, and
            consists of sequences JBKTGU010000001-JBKTGU010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.080224927281554x
            Sequencing Technology  :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_047240565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:33:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,578
            CDSs (total)                      :: 3,502
            Genes (coding)                    :: 3,376
            CDSs (with protein)               :: 3,376
            Genes (RNA)                       :: 76
            rRNAs                             :: 4, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 3 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 76 of 126
            Pseudo Genes (incomplete)         :: 63 of 126
            Pseudo Genes (internal stop)      :: 4 of 126
            Pseudo Genes (multiple problems)  :: 17 of 126
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3705731
                     /organism="Ruminococcus callidus"
                     /mol_type="genomic DNA"
                     /isolate="19-1_67"
                     /isolation_source="infant stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:40519"
                     /environmental_sample
                     /geo_loc_name="USA: Saint Louis"
                     /lat_lon="38.6270 N 90.1994 W"
                     /collection_date="2018-03-12"
                     /metagenome_source="human gut metagenome"
                     /metagenomic
WGS         JBKTGU010000001-JBKTGU010000032
WGS_SCAFLD  NZ_JBKTGU010000001-NZ_JBKTGU010000032
//
LOCUS       NZ_JADZHQ010000000   4790201 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain CCUG-38646, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHQ000000000
VERSION     NZ_JADZHQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670450
            Assembly: GCF_017580485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4790201)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4790201)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHQ000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHQ000000000.  This version of the project
            (01) has the accession number NZ_JADZHQ010000000, and consists of
            sequences JADZHQ010000001-JADZHQ010000035.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 140.0860473287029x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:41:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,296
            CDSs (total)                      :: 4,184
            Genes (coding)                    :: 4,133
            CDSs (with protein)               :: 4,133
            Genes (RNA)                       :: 112
            rRNAs                             :: 6, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 2, 3, 4 (5S, 16S, 23S)
            tRNAs                             :: 94
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 13 of 51
            Pseudo Genes (incomplete)         :: 43 of 51
            Pseudo Genes (internal stop)      :: 5 of 51
            Pseudo Genes (multiple problems)  :: 8 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4790201
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="CCUG-38646"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Norway"
                     /collection_date="1997"
WGS         JADZHQ010000001-JADZHQ010000035
WGS_SCAFLD  NZ_JADZHQ010000001-NZ_JADZHQ010000035
//
LOCUS       NZ_JADZHY010000000   4784369 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain CCUG-526, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHY000000000
VERSION     NZ_JADZHY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670455
            Assembly: GCF_017580685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4784369)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4784369)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHY000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHY000000000.  This version of the project
            (01) has the accession number NZ_JADZHY010000000, and consists of
            sequences JADZHY010000001-JADZHY010000045.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 124.93477554643403x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:49:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,314
            CDSs (total)                      :: 4,207
            Genes (coding)                    :: 4,161
            CDSs (with protein)               :: 4,161
            Genes (RNA)                       :: 107
            rRNAs                             :: 5, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 12 of 47
            Pseudo Genes (incomplete)         :: 34 of 47
            Pseudo Genes (internal stop)      :: 7 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4784369
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="CCUG-526"
                     /isolation_source="ear"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Sweden"
                     /collection_date="1969"
WGS         JADZHY010000001-JADZHY010000045
WGS_SCAFLD  NZ_JADZHY010000001-NZ_JADZHY010000045
//
LOCUS       NZ_JAFIZH010000000   5108417 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia ureilytica strain SER00298, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFIZH000000000
VERSION     NZ_JAFIZH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17965078
            Assembly: GCF_017152795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia ureilytica
  ORGANISM  Serratia ureilytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5108417)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Enhanced detection system for hospital associated transmission
            using whole genome sequencing surveillance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5108417)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) School of Medicine, University of
            Pittsburgh, 4200 Fifth Ave, Pittsburgh, PA 15260, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFIZH000000000.1.
            The Serratia ureilytica whole genome shotgun (WGS) project has the
            project accession NZ_JAFIZH000000000.  This version of the project
            (01) has the accession number NZ_JAFIZH010000000, and consists of
            sequences JAFIZH010000001-JAFIZH010000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017152795.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:48:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,897
            CDSs (total)                      :: 4,798
            Genes (coding)                    :: 4,766
            CDSs (with protein)               :: 4,766
            Genes (RNA)                       :: 99
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 82
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 14 of 34
            Pseudo Genes (incomplete)         :: 23 of 34
            Pseudo Genes (internal stop)      :: 6 of 34
            Pseudo Genes (multiple problems)  :: 11 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5108417
                     /organism="Serratia ureilytica"
                     /mol_type="genomic DNA"
                     /strain="SER00298"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:300181"
                     /geo_loc_name="USA: Pittsburgh, Pennsylvania"
                     /lat_lon="40.44 N 79.97 W"
                     /collection_date="2019"
                     /collected_by="University of Pittsburgh Medical Center"
WGS         JAFIZH010000001-JAFIZH010000039
WGS_SCAFLD  NZ_JAFIZH010000001-NZ_JAFIZH010000039
//
LOCUS       NZ_JADZHW010000000   4997180 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain 5043, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHW000000000
VERSION     NZ_JADZHW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670467
            Assembly: GCF_017580635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4997180)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4997180)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHW000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHW000000000.  This version of the project
            (01) has the accession number NZ_JADZHW010000000, and consists of
            sequences JADZHW010000001-JADZHW010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-OCT-2018
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 58.11051573087221x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580635.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:49:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,527
            CDSs (total)                      :: 4,429
            Genes (coding)                    :: 4,384
            CDSs (with protein)               :: 4,384
            Genes (RNA)                       :: 98
            rRNAs                             :: 6, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 16 of 45
            Pseudo Genes (incomplete)         :: 33 of 45
            Pseudo Genes (internal stop)      :: 3 of 45
            Pseudo Genes (multiple problems)  :: 6 of 45
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4997180
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="5043"
                     /isolation_source="wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Spain: Gran Canaria"
                     /collection_date="2015"
WGS         JADZHW010000001-JADZHW010000052
WGS_SCAFLD  NZ_JADZHW010000001-NZ_JADZHW010000052
//
LOCUS       NZ_JAFIZC010000000   5119882 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia ureilytica strain SER00303, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFIZC000000000
VERSION     NZ_JAFIZC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17965083
            Assembly: GCF_017152155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia ureilytica
  ORGANISM  Serratia ureilytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5119882)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Enhanced detection system for hospital associated transmission
            using whole genome sequencing surveillance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5119882)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) School of Medicine, University of
            Pittsburgh, 4200 Fifth Ave, Pittsburgh, PA 15260, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFIZC000000000.1.
            The Serratia ureilytica whole genome shotgun (WGS) project has the
            project accession NZ_JAFIZC000000000.  This version of the project
            (01) has the accession number NZ_JAFIZC010000000, and consists of
            sequences JAFIZC010000001-JAFIZC010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 79x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017152155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:48:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,865
            CDSs (total)                      :: 4,769
            Genes (coding)                    :: 4,737
            CDSs (with protein)               :: 4,737
            Genes (RNA)                       :: 96
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 10 of 34
            Pseudo Genes (incomplete)         :: 20 of 34
            Pseudo Genes (internal stop)      :: 9 of 34
            Pseudo Genes (multiple problems)  :: 7 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5119882
                     /organism="Serratia ureilytica"
                     /mol_type="genomic DNA"
                     /strain="SER00303"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:300181"
                     /geo_loc_name="USA: Pittsburgh, Pennsylvania"
                     /lat_lon="40.44 N 79.97 W"
                     /collection_date="2019"
                     /collected_by="University of Pittsburgh Medical Center"
WGS         JAFIZC010000001-JAFIZC010000040
WGS_SCAFLD  NZ_JAFIZC010000001-NZ_JAFIZC010000040
//
LOCUS       NZ_JADZHE010000000   4870277 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain 6F5, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHE000000000
VERSION     NZ_JADZHE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670462
            Assembly: GCF_017580285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4870277)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4870277)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHE000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHE000000000.  This version of the project
            (01) has the accession number NZ_JADZHE010000000, and consists of
            sequences JADZHE010000001-JADZHE010000071.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-OCT-2018
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 113.59612502533223x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:48:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,395
            CDSs (total)                      :: 4,281
            Genes (coding)                    :: 4,235
            CDSs (with protein)               :: 4,235
            Genes (RNA)                       :: 114
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 3, 4 (16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 19 of 46
            Pseudo Genes (incomplete)         :: 32 of 46
            Pseudo Genes (internal stop)      :: 3 of 46
            Pseudo Genes (multiple problems)  :: 6 of 46
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870277
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="6F5"
                     /isolation_source="Bronchial aspirate"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Spain: Gran Canaria"
                     /collection_date="2011"
WGS         JADZHE010000001-JADZHE010000071
WGS_SCAFLD  NZ_JADZHE010000001-NZ_JADZHE010000071
//
LOCUS       NZ_JBTVXZ010000000   4701752 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 6-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXZ000000000
VERSION     NZ_JBTVXZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708966
            Assembly: GCF_056775095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4701752)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4701752)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXZ000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXZ000000000.  This version of the project
            (01) has the accession number NZ_JBTVXZ010000000, and consists of
            sequences JBTVXZ010000001-JBTVXZ010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775095.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:52:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,569
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,358
            CDSs (with protein)               :: 4,358
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 52 of 128
            Pseudo Genes (incomplete)         :: 94 of 128
            Pseudo Genes (internal stop)      :: 17 of 128
            Pseudo Genes (multiple problems)  :: 33 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701752
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="6-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXZ010000001-JBTVXZ010000040
WGS_SCAFLD  NZ_JBTVXZ010000001-NZ_JBTVXZ010000040
//
LOCUS       NZ_JADZHZ010000000   4880812 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain 404, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHZ000000000
VERSION     NZ_JADZHZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670460
            Assembly: GCF_017580715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4880812)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4880812)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHZ000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHZ000000000.  This version of the project
            (01) has the accession number NZ_JADZHZ010000000, and consists of
            sequences JADZHZ010000001-JADZHZ010000071.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-OCT-2018
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 87.8071281991603x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:50:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,419
            CDSs (total)                      :: 4,310
            Genes (coding)                    :: 4,265
            CDSs (with protein)               :: 4,265
            Genes (RNA)                       :: 109
            rRNAs                             :: 7, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 11 of 46
            Pseudo Genes (incomplete)         :: 37 of 46
            Pseudo Genes (internal stop)      :: 3 of 46
            Pseudo Genes (multiple problems)  :: 5 of 46
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880812
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="404"
                     /isolation_source="cutaneous biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Spain: Gran Canaria"
                     /collection_date="2008"
WGS         JADZHZ010000001-JADZHZ010000071
WGS_SCAFLD  NZ_JADZHZ010000001-NZ_JADZHZ010000071
//
LOCUS       NZ_JBTVYC010000000   4694810 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 3-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVYC000000000
VERSION     NZ_JBTVYC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708963
            Assembly: GCF_056775175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4694810)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4694810)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVYC000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVYC000000000.  This version of the project
            (01) has the accession number NZ_JBTVYC010000000, and consists of
            sequences JBTVYC010000001-JBTVYC010000046.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:51:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,602
            CDSs (total)                      :: 4,515
            Genes (coding)                    :: 4,368
            CDSs (with protein)               :: 4,368
            Genes (RNA)                       :: 87
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 53 of 147
            Pseudo Genes (incomplete)         :: 108 of 147
            Pseudo Genes (internal stop)      :: 17 of 147
            Pseudo Genes (multiple problems)  :: 30 of 147
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4694810
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="3-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVYC010000001-JBTVYC010000046
WGS_SCAFLD  NZ_JBTVYC010000001-NZ_JBTVYC010000046
//
LOCUS       NZ_JBTWCT010000000   4696260 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCT000000000
VERSION     NZ_JBTWCT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711984
            Assembly: GCF_056775535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4696260)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4696260)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCT000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCT000000000.  This version of the project
            (01) has the accession number NZ_JBTWCT010000000, and consists of
            sequences JBTWCT010000001-JBTWCT010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:54:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,604
            CDSs (total)                      :: 4,517
            Genes (coding)                    :: 4,368
            CDSs (with protein)               :: 4,368
            Genes (RNA)                       :: 87
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 52 of 149
            Pseudo Genes (incomplete)         :: 110 of 149
            Pseudo Genes (internal stop)      :: 17 of 149
            Pseudo Genes (multiple problems)  :: 29 of 149
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4696260
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_1"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCT010000001-JBTWCT010000047
WGS_SCAFLD  NZ_JBTWCT010000001-NZ_JBTWCT010000047
//
LOCUS       NZ_JBTVXX010000000   4701339 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 8-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXX000000000
VERSION     NZ_JBTVXX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708968
            Assembly: GCF_056775115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4701339)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4701339)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXX000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXX000000000.  This version of the project
            (01) has the accession number NZ_JBTVXX010000000, and consists of
            sequences JBTVXX010000001-JBTVXX010000041.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:47:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,569
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,358
            CDSs (with protein)               :: 4,358
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 52 of 128
            Pseudo Genes (incomplete)         :: 94 of 128
            Pseudo Genes (internal stop)      :: 17 of 128
            Pseudo Genes (multiple problems)  :: 33 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701339
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="8-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXX010000001-JBTVXX010000041
WGS_SCAFLD  NZ_JBTVXX010000001-NZ_JBTVXX010000041
//
LOCUS       NZ_JADZHK010000000   4870233 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shewanella algae strain CCUG-72678, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JADZHK000000000
VERSION     NZ_JADZHK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16670456
            Assembly: GCF_017580415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shewanella algae
  ORGANISM  Shewanella algae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Alteromonadales; Shewanellaceae; Shewanella.
REFERENCE   1  (bases 1 to 4870233)
  AUTHORS   Martin-Rodriguez,A.J., Higdon,S.M., Thorell,K., Tellgren-Roth,C.,
            Sjoling,A., Galperin,M.Y., Krell,T. and Romling,U.
  TITLE     Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory
            Pathways in Shewanella algae Strains: Novel Bacterial Sensory
            Domains and Functional Insights into Lifestyle Regulation
  JOURNAL   mSystems 7 (2), e0151821 (2022)
   PUBMED   35311563
REFERENCE   2  (bases 1 to 4870233)
  AUTHORS   Martin-Rodriguez,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Microbiology, Tumor and Cell Biology,
            Shewanella, Solnavagen 9, Stockholm 171 65, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JADZHK000000000.1.
            The Shewanella algae whole genome shotgun (WGS) project has the
            project accession NZ_JADZHK000000000.  This version of the project
            (01) has the accession number NZ_JADZHK010000000, and consists of
            sequences JADZHK010000001-JADZHK010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 13-SEP-2019
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 125.28925330677198x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017580415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,374
            CDSs (total)                      :: 4,253
            Genes (coding)                    :: 4,205
            CDSs (with protein)               :: 4,205
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 16S)
            partial rRNAs                     :: 3, 5, 4 (5S, 16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 16 of 48
            Pseudo Genes (incomplete)         :: 40 of 48
            Pseudo Genes (internal stop)      :: 4 of 48
            Pseudo Genes (multiple problems)  :: 10 of 48
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870233
                     /organism="Shewanella algae"
                     /mol_type="genomic DNA"
                     /strain="CCUG-72678"
                     /isolation_source="crushwound"
                     /host="Homo sapiens"
                     /db_xref="taxon:38313"
                     /geo_loc_name="Sweden"
                     /collection_date="2018"
WGS         JADZHK010000001-JADZHK010000046
WGS_SCAFLD  NZ_JADZHK010000001-NZ_JADZHK010000046
//
LOCUS       NZ_JAFJAA010000000   5256150 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia ureilytica strain SER00278, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFJAA000000000
VERSION     NZ_JAFJAA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17965059
            Assembly: GCF_017153255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia ureilytica
  ORGANISM  Serratia ureilytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5256150)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Enhanced detection system for hospital associated transmission
            using whole genome sequencing surveillance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5256150)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) School of Medicine, University of
            Pittsburgh, 4200 Fifth Ave, Pittsburgh, PA 15260, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFJAA000000000.1.
            The Serratia ureilytica whole genome shotgun (WGS) project has the
            project accession NZ_JAFJAA000000000.  This version of the project
            (01) has the accession number NZ_JAFJAA010000000, and consists of
            sequences JAFJAA010000001-JAFJAA010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 68x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017153255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:50:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,024
            CDSs (total)                      :: 4,929
            Genes (coding)                    :: 4,900
            CDSs (with protein)               :: 4,900
            Genes (RNA)                       :: 95
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 77
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 8 of 30
            Pseudo Genes (incomplete)         :: 22 of 30
            Pseudo Genes (internal stop)      :: 6 of 30
            Pseudo Genes (multiple problems)  :: 6 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5256150
                     /organism="Serratia ureilytica"
                     /mol_type="genomic DNA"
                     /strain="SER00278"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:300181"
                     /geo_loc_name="USA: Pittsburgh, Pennsylvania"
                     /lat_lon="40.44 N 79.97 W"
                     /collection_date="2019"
                     /collected_by="University of Pittsburgh Medical Center"
WGS         JAFJAA010000001-JAFJAA010000047
WGS_SCAFLD  NZ_JAFJAA010000001-NZ_JAFJAA010000047
//
LOCUS       NZ_JBTWCL010000000   4771836 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_9, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCL000000000
VERSION     NZ_JBTWCL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711992
            Assembly: GCF_056775375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4771836)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4771836)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCL000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCL000000000.  This version of the project
            (01) has the accession number NZ_JBTWCL010000000, and consists of
            sequences JBTWCL010000001-JBTWCL010000052.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:47:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,664
            CDSs (total)                      :: 4,581
            Genes (coding)                    :: 4,425
            CDSs (with protein)               :: 4,425
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 68 of 156
            Pseudo Genes (incomplete)         :: 109 of 156
            Pseudo Genes (internal stop)      :: 25 of 156
            Pseudo Genes (multiple problems)  :: 40 of 156
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4771836
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_9"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCL010000001-JBTWCL010000052
WGS_SCAFLD  NZ_JBTWCL010000001-NZ_JBTWCL010000052
//
LOCUS       NZ_JAFIYW010000000   5171054 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia ureilytica strain SER00309, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFIYW000000000
VERSION     NZ_JAFIYW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17965089
            Assembly: GCF_017152515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia ureilytica
  ORGANISM  Serratia ureilytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5171054)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Enhanced detection system for hospital associated transmission
            using whole genome sequencing surveillance
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5171054)
  AUTHORS   Harrison,L.H., Van Tyne,D., Marsh,J.W., Griffith,M.P., Snyder,D.J.,
            Cooper,V.S. and Mustapha,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2021) School of Medicine, University of
            Pittsburgh, 4200 Fifth Ave, Pittsburgh, PA 15260, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFIYW000000000.1.
            The Serratia ureilytica whole genome shotgun (WGS) project has the
            project accession NZ_JAFIYW000000000.  This version of the project
            (01) has the accession number NZ_JAFIYW010000000, and consists of
            sequences JAFIYW010000001-JAFIYW010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 82x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017152515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:55:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,894
            CDSs (total)                      :: 4,800
            Genes (coding)                    :: 4,765
            CDSs (with protein)               :: 4,765
            Genes (RNA)                       :: 94
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 78
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 15 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 15 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5171054
                     /organism="Serratia ureilytica"
                     /mol_type="genomic DNA"
                     /strain="SER00309"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:300181"
                     /geo_loc_name="USA: Pittsburgh, Pennsylvania"
                     /lat_lon="40.44 N 79.97 W"
                     /collection_date="2019"
                     /collected_by="University of Pittsburgh Medical Center"
WGS         JAFIYW010000001-JAFIYW010000036
WGS_SCAFLD  NZ_JAFIYW010000001-NZ_JAFIYW010000036
//
LOCUS       NZ_JAJPFZ010000000   5104368 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia ureilytica strain AR_0130, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAJPFZ000000000
VERSION     NZ_JAJPFZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23719944
            Assembly: GCF_022406185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia ureilytica
  ORGANISM  Serratia ureilytica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5104368)
  AUTHORS   Simner,P.J., Musser,K.A., Mitchell,K., Wise,M.G., Lewis,S., Yee,R.,
            Bergman,Y., Good,C.E., Abdelhamed,A.M., Li,H., Laseman,E.M.,
            Sahm,D., Pitzer,K., Quan,J., Walker,G.T., Jacobs,M.R. and
            Rhoads,D.D.
  TITLE     Multicenter Evaluation of the Acuitas AMR Gene Panel for Detection
            of an Extended Panel of Antimicrobial Resistance Genes among
            Bacterial Isolates
  JOURNAL   J Clin Microbiol 60 (3), e0209821 (2022)
   PUBMED   35138924
REFERENCE   2  (bases 1 to 5104368)
  AUTHORS   Simner,P.J., Musser,K.A., Mitchell,K., Wise,M.G., Lewis,S., Yee,R.,
            Bergman,Y., Good,C.E., Abdelhamed,A.M., Li,H., Laseman,E.M.,
            Sahm,D., Pitzer,K., Quan,J., Walker,T.G., Jacobs,M.R. and Rhoads,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2021) Bioinformatics, Ares Genetics GmbH,
            Karl-Farkas-Gasse 18, Vienna 1030, Austria
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJPFZ000000000.1.
            The Serratia ureilytica whole genome shotgun (WGS) project has the
            project accession NZ_JAJPFZ000000000.  This version of the project
            (01) has the accession number NZ_JAJPFZ010000000, and consists of
            sequences JAJPFZ010000001-JAJPFZ010000083.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Ridom SeqSphere+ v. 7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 190.0525646153846x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022406185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:12:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,921
            CDSs (total)                      :: 4,824
            Genes (coding)                    :: 4,784
            CDSs (with protein)               :: 4,784
            Genes (RNA)                       :: 97
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 76
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 14 of 42
            Pseudo Genes (incomplete)         :: 25 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5104368
                     /organism="Serratia ureilytica"
                     /mol_type="genomic DNA"
                     /strain="AR_0130"
                     /db_xref="taxon:300181"
WGS         JAJPFZ010000001-JAJPFZ010000083
WGS_SCAFLD  NZ_JAJPFZ010000001-NZ_JAJPFZ010000083
//
LOCUS       NZ_JBTVYA010000000   4849071 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 5-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVYA000000000
VERSION     NZ_JBTVYA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708965
            Assembly: GCF_056775135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4849071)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4849071)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVYA000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVYA000000000.  This version of the project
            (01) has the accession number NZ_JBTVYA010000000, and consists of
            sequences JBTVYA010000001-JBTVYA010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:56:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,749
            CDSs (total)                      :: 4,665
            Genes (coding)                    :: 4,531
            CDSs (with protein)               :: 4,531
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 43 of 134
            Pseudo Genes (incomplete)         :: 99 of 134
            Pseudo Genes (internal stop)      :: 23 of 134
            Pseudo Genes (multiple problems)  :: 28 of 134
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4849071
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="5-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVYA010000001-JBTVYA010000063
WGS_SCAFLD  NZ_JBTVYA010000001-NZ_JBTVYA010000063
//
LOCUS       NZ_JBTWCM010000000   4701339 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_8, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCM000000000
VERSION     NZ_JBTWCM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711991
            Assembly: GCF_056775395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4701339)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4701339)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCM000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCM000000000.  This version of the project
            (01) has the accession number NZ_JBTWCM010000000, and consists of
            sequences JBTWCM010000001-JBTWCM010000041.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:51:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,569
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,358
            CDSs (with protein)               :: 4,358
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 52 of 128
            Pseudo Genes (incomplete)         :: 94 of 128
            Pseudo Genes (internal stop)      :: 17 of 128
            Pseudo Genes (multiple problems)  :: 33 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701339
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_8"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCM010000001-JBTWCM010000041
WGS_SCAFLD  NZ_JBTWCM010000001-NZ_JBTWCM010000041
//
LOCUS       NZ_JBTVXQ010000000   4713827 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 20-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXQ000000000
VERSION     NZ_JBTVXQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708975
            Assembly: GCF_056774935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4713827)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4713827)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXQ000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXQ000000000.  This version of the project
            (01) has the accession number NZ_JBTVXQ010000000, and consists of
            sequences JBTVXQ010000001-JBTVXQ010000036.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056774935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:52:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,625
            CDSs (total)                      :: 4,542
            Genes (coding)                    :: 4,431
            CDSs (with protein)               :: 4,431
            Genes (RNA)                       :: 83
            rRNAs                             :: 3, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 38 of 111
            Pseudo Genes (incomplete)         :: 91 of 111
            Pseudo Genes (internal stop)      :: 18 of 111
            Pseudo Genes (multiple problems)  :: 31 of 111
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4713827
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="20-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXQ010000001-JBTVXQ010000036
WGS_SCAFLD  NZ_JBTVXQ010000001-NZ_JBTVXQ010000036
//
LOCUS       NZ_JBTVXY010000000   4702203 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 7-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXY000000000
VERSION     NZ_JBTVXY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708967
            Assembly: GCF_056775075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4702203)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4702203)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXY000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXY000000000.  This version of the project
            (01) has the accession number NZ_JBTVXY010000000, and consists of
            sequences JBTVXY010000001-JBTVXY010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775075.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:58:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,568
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,360
            CDSs (with protein)               :: 4,360
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 50 of 126
            Pseudo Genes (incomplete)         :: 93 of 126
            Pseudo Genes (internal stop)      :: 17 of 126
            Pseudo Genes (multiple problems)  :: 32 of 126
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4702203
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="7-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXY010000001-JBTVXY010000043
WGS_SCAFLD  NZ_JBTVXY010000001-NZ_JBTVXY010000043
//
LOCUS       NZ_JBTWCN010000000   4702203 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCN000000000
VERSION     NZ_JBTWCN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711990
            Assembly: GCF_056775415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4702203)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4702203)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCN000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCN000000000.  This version of the project
            (01) has the accession number NZ_JBTWCN010000000, and consists of
            sequences JBTWCN010000001-JBTWCN010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:54:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,568
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,360
            CDSs (with protein)               :: 4,360
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 50 of 126
            Pseudo Genes (incomplete)         :: 93 of 126
            Pseudo Genes (internal stop)      :: 17 of 126
            Pseudo Genes (multiple problems)  :: 32 of 126
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4702203
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_7"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCN010000001-JBTWCN010000043
WGS_SCAFLD  NZ_JBTWCN010000001-NZ_JBTWCN010000043
//
LOCUS       NZ_JBTWCE010000000   4870132 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_21, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCE000000000
VERSION     NZ_JBTWCE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711999
            Assembly: GCF_056775235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4870132)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4870132)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCE000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCE000000000.  This version of the project
            (01) has the accession number NZ_JBTWCE010000000, and consists of
            sequences JBTWCE010000001-JBTWCE010000070.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:47:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,820
            CDSs (total)                      :: 4,736
            Genes (coding)                    :: 4,585
            CDSs (with protein)               :: 4,585
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 48 of 151
            Pseudo Genes (incomplete)         :: 116 of 151
            Pseudo Genes (internal stop)      :: 22 of 151
            Pseudo Genes (multiple problems)  :: 32 of 151
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870132
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_21"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCE010000001-JBTWCE010000070
WGS_SCAFLD  NZ_JBTWCE010000001-NZ_JBTWCE010000070
//
LOCUS       NZ_JBTWCH010000000   4698360 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_17, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCH000000000
VERSION     NZ_JBTWCH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711996
            Assembly: GCF_056775295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4698360)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4698360)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCH000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCH000000000.  This version of the project
            (01) has the accession number NZ_JBTWCH010000000, and consists of
            sequences JBTWCH010000001-JBTWCH010000035.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:53:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,587
            CDSs (total)                      :: 4,505
            Genes (coding)                    :: 4,400
            CDSs (with protein)               :: 4,400
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 43 of 105
            Pseudo Genes (incomplete)         :: 81 of 105
            Pseudo Genes (internal stop)      :: 15 of 105
            Pseudo Genes (multiple problems)  :: 30 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4698360
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_17"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCH010000001-JBTWCH010000035
WGS_SCAFLD  NZ_JBTWCH010000001-NZ_JBTWCH010000035
//
LOCUS       NZ_JBTWCQ010000000   4934267 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCQ000000000
VERSION     NZ_JBTWCQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711987
            Assembly: GCF_056775455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4934267)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4934267)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCQ000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCQ000000000.  This version of the project
            (01) has the accession number NZ_JBTWCQ010000000, and consists of
            sequences JBTWCQ010000001-JBTWCQ010000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:10:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,925
            CDSs (total)                      :: 4,842
            Genes (coding)                    :: 4,633
            CDSs (with protein)               :: 4,633
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 64
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 209
            CDSs (without protein)            :: 209
            Pseudo Genes (ambiguous residues) :: 0 of 209
            Pseudo Genes (frameshifted)       :: 75 of 209
            Pseudo Genes (incomplete)         :: 157 of 209
            Pseudo Genes (internal stop)      :: 37 of 209
            Pseudo Genes (multiple problems)  :: 52 of 209
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934267
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_4"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCQ010000001-JBTWCQ010000071
WGS_SCAFLD  NZ_JBTWCQ010000001-NZ_JBTWCQ010000071
//
LOCUS       NZ_JBTVYE010000000   4696260 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 1-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVYE000000000
VERSION     NZ_JBTVYE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708961
            Assembly: GCF_056775215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4696260)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4696260)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVYE000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVYE000000000.  This version of the project
            (01) has the accession number NZ_JBTVYE010000000, and consists of
            sequences JBTVYE010000001-JBTVYE010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:48:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,604
            CDSs (total)                      :: 4,517
            Genes (coding)                    :: 4,368
            CDSs (with protein)               :: 4,368
            Genes (RNA)                       :: 87
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 52 of 149
            Pseudo Genes (incomplete)         :: 110 of 149
            Pseudo Genes (internal stop)      :: 17 of 149
            Pseudo Genes (multiple problems)  :: 29 of 149
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4696260
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVYE010000001-JBTVYE010000047
WGS_SCAFLD  NZ_JBTVYE010000001-NZ_JBTVYE010000047
//
LOCUS       NZ_JBTVXT010000000   4683498 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 16-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXT000000000
VERSION     NZ_JBTVXT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708972
            Assembly: GCF_056774965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4683498)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4683498)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXT000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXT000000000.  This version of the project
            (01) has the accession number NZ_JBTVXT010000000, and consists of
            sequences JBTVXT010000001-JBTVXT010000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056774965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:54:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,540
            CDSs (total)                      :: 4,461
            Genes (coding)                    :: 4,356
            CDSs (with protein)               :: 4,356
            Genes (RNA)                       :: 79
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 43 of 105
            Pseudo Genes (incomplete)         :: 81 of 105
            Pseudo Genes (internal stop)      :: 15 of 105
            Pseudo Genes (multiple problems)  :: 30 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4683498
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="16-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXT010000001-JBTVXT010000034
WGS_SCAFLD  NZ_JBTVXT010000001-NZ_JBTVXT010000034
//
LOCUS       NZ_JBTWCF010000000   4713827 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_20, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCF000000000
VERSION     NZ_JBTWCF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711998
            Assembly: GCF_056775255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4713827)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4713827)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCF000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCF000000000.  This version of the project
            (01) has the accession number NZ_JBTWCF010000000, and consists of
            sequences JBTWCF010000001-JBTWCF010000036.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:49:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,625
            CDSs (total)                      :: 4,542
            Genes (coding)                    :: 4,431
            CDSs (with protein)               :: 4,431
            Genes (RNA)                       :: 83
            rRNAs                             :: 3, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 38 of 111
            Pseudo Genes (incomplete)         :: 91 of 111
            Pseudo Genes (internal stop)      :: 18 of 111
            Pseudo Genes (multiple problems)  :: 31 of 111
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4713827
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_20"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCF010000001-JBTWCF010000036
WGS_SCAFLD  NZ_JBTWCF010000001-NZ_JBTWCF010000036
//
LOCUS       NZ_JBTWCS010000000   4695100 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCS000000000
VERSION     NZ_JBTWCS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711985
            Assembly: GCF_056775515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4695100)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4695100)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCS000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCS000000000.  This version of the project
            (01) has the accession number NZ_JBTWCS010000000, and consists of
            sequences JBTWCS010000001-JBTWCS010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:44:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,602
            CDSs (total)                      :: 4,517
            Genes (coding)                    :: 4,368
            CDSs (with protein)               :: 4,368
            Genes (RNA)                       :: 85
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 53 of 149
            Pseudo Genes (incomplete)         :: 110 of 149
            Pseudo Genes (internal stop)      :: 17 of 149
            Pseudo Genes (multiple problems)  :: 30 of 149
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4695100
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_2"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCS010000001-JBTWCS010000047
WGS_SCAFLD  NZ_JBTWCS010000001-NZ_JBTWCS010000047
//
LOCUS       NZ_JBTWCO010000000   4701752 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCO000000000
VERSION     NZ_JBTWCO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711989
            Assembly: GCF_056775435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4701752)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4701752)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCO000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCO000000000.  This version of the project
            (01) has the accession number NZ_JBTWCO010000000, and consists of
            sequences JBTWCO010000001-JBTWCO010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775435.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:55:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,569
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,358
            CDSs (with protein)               :: 4,358
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 52 of 128
            Pseudo Genes (incomplete)         :: 94 of 128
            Pseudo Genes (internal stop)      :: 17 of 128
            Pseudo Genes (multiple problems)  :: 33 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4701752
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_6"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCO010000001-JBTWCO010000040
WGS_SCAFLD  NZ_JBTWCO010000001-NZ_JBTWCO010000040
//
LOCUS       NZ_JBTWCP010000000   4849071 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_5, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCP000000000
VERSION     NZ_JBTWCP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711988
            Assembly: GCF_056775475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4849071)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4849071)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCP000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCP000000000.  This version of the project
            (01) has the accession number NZ_JBTWCP010000000, and consists of
            sequences JBTWCP010000001-JBTWCP010000063.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:52:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,749
            CDSs (total)                      :: 4,665
            Genes (coding)                    :: 4,531
            CDSs (with protein)               :: 4,531
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 3 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 43 of 134
            Pseudo Genes (incomplete)         :: 99 of 134
            Pseudo Genes (internal stop)      :: 23 of 134
            Pseudo Genes (multiple problems)  :: 28 of 134
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4849071
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_5"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCP010000001-JBTWCP010000063
WGS_SCAFLD  NZ_JBTWCP010000001-NZ_JBTWCP010000063
//
LOCUS       NZ_JBTWCG010000000   4859818 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCG000000000
VERSION     NZ_JBTWCG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711997
            Assembly: GCF_056775275.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4859818)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4859818)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCG000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCG000000000.  This version of the project
            (01) has the accession number NZ_JBTWCG010000000, and consists of
            sequences JBTWCG010000001-JBTWCG010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775275.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:00:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,853
            CDSs (total)                      :: 4,773
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 74 of 160
            Pseudo Genes (incomplete)         :: 111 of 160
            Pseudo Genes (internal stop)      :: 24 of 160
            Pseudo Genes (multiple problems)  :: 42 of 160
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4859818
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_19"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCG010000001-JBTWCG010000043
WGS_SCAFLD  NZ_JBTWCG010000001-NZ_JBTWCG010000043
//
LOCUS       NZ_JBTVXV010000000   4878331 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 14-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXV000000000
VERSION     NZ_JBTVXV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708970
            Assembly: GCF_056775015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4878331)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4878331)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXV000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXV000000000.  This version of the project
            (01) has the accession number NZ_JBTVXV010000000, and consists of
            sequences JBTVXV010000001-JBTVXV010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775015.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:57:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,878
            CDSs (total)                      :: 4,794
            Genes (coding)                    :: 4,638
            CDSs (with protein)               :: 4,638
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 72 of 156
            Pseudo Genes (incomplete)         :: 111 of 156
            Pseudo Genes (internal stop)      :: 22 of 156
            Pseudo Genes (multiple problems)  :: 42 of 156
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4878331
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="14-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXV010000001-JBTVXV010000047
WGS_SCAFLD  NZ_JBTVXV010000001-NZ_JBTVXV010000047
//
LOCUS       NZ_JBTVYD010000000   4695100 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 2-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVYD000000000
VERSION     NZ_JBTVYD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708962
            Assembly: GCF_056775195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4695100)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4695100)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVYD000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVYD000000000.  This version of the project
            (01) has the accession number NZ_JBTVYD010000000, and consists of
            sequences JBTVYD010000001-JBTVYD010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:54:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,602
            CDSs (total)                      :: 4,517
            Genes (coding)                    :: 4,368
            CDSs (with protein)               :: 4,368
            Genes (RNA)                       :: 85
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 53 of 149
            Pseudo Genes (incomplete)         :: 110 of 149
            Pseudo Genes (internal stop)      :: 17 of 149
            Pseudo Genes (multiple problems)  :: 30 of 149
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4695100
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVYD010000001-JBTVYD010000047
WGS_SCAFLD  NZ_JBTVYD010000001-NZ_JBTVYD010000047
//
LOCUS       NZ_JBTVXW010000000   4771836 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 9-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXW000000000
VERSION     NZ_JBTVXW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708969
            Assembly: GCF_056775055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4771836)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4771836)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXW000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXW000000000.  This version of the project
            (01) has the accession number NZ_JBTVXW010000000, and consists of
            sequences JBTVXW010000001-JBTVXW010000052.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:52:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,664
            CDSs (total)                      :: 4,581
            Genes (coding)                    :: 4,425
            CDSs (with protein)               :: 4,425
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 4, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 68 of 156
            Pseudo Genes (incomplete)         :: 109 of 156
            Pseudo Genes (internal stop)      :: 25 of 156
            Pseudo Genes (multiple problems)  :: 40 of 156
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4771836
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="9-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXW010000001-JBTVXW010000052
WGS_SCAFLD  NZ_JBTVXW010000001-NZ_JBTVXW010000052
//
LOCUS       NZ_JBTWCR010000000   4694810 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCR000000000
VERSION     NZ_JBTWCR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711986
            Assembly: GCF_056775495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4694810)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4694810)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCR000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCR000000000.  This version of the project
            (01) has the accession number NZ_JBTWCR010000000, and consists of
            sequences JBTWCR010000001-JBTWCR010000046.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:41:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,602
            CDSs (total)                      :: 4,515
            Genes (coding)                    :: 4,368
            CDSs (with protein)               :: 4,368
            Genes (RNA)                       :: 87
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 147
            CDSs (without protein)            :: 147
            Pseudo Genes (ambiguous residues) :: 0 of 147
            Pseudo Genes (frameshifted)       :: 53 of 147
            Pseudo Genes (incomplete)         :: 108 of 147
            Pseudo Genes (internal stop)      :: 17 of 147
            Pseudo Genes (multiple problems)  :: 30 of 147
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4694810
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_3"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCR010000001-JBTWCR010000046
WGS_SCAFLD  NZ_JBTWCR010000001-NZ_JBTWCR010000046
//
LOCUS       NZ_JBTVXS010000000   4698360 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 17-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXS000000000
VERSION     NZ_JBTVXS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708973
            Assembly: GCF_056774975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4698360)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4698360)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXS000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXS000000000.  This version of the project
            (01) has the accession number NZ_JBTVXS010000000, and consists of
            sequences JBTVXS010000001-JBTVXS010000035.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056774975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:59:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,587
            CDSs (total)                      :: 4,505
            Genes (coding)                    :: 4,400
            CDSs (with protein)               :: 4,400
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 43 of 105
            Pseudo Genes (incomplete)         :: 81 of 105
            Pseudo Genes (internal stop)      :: 15 of 105
            Pseudo Genes (multiple problems)  :: 30 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4698360
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="17-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXS010000001-JBTVXS010000035
WGS_SCAFLD  NZ_JBTVXS010000001-NZ_JBTVXS010000035
//
LOCUS       NZ_JBTWCI010000000   4683498 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_16, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCI000000000
VERSION     NZ_JBTWCI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711995
            Assembly: GCF_056775315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4683498)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4683498)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCI000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCI000000000.  This version of the project
            (01) has the accession number NZ_JBTWCI010000000, and consists of
            sequences JBTWCI010000001-JBTWCI010000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:57:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,540
            CDSs (total)                      :: 4,461
            Genes (coding)                    :: 4,356
            CDSs (with protein)               :: 4,356
            Genes (RNA)                       :: 79
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 43 of 105
            Pseudo Genes (incomplete)         :: 81 of 105
            Pseudo Genes (internal stop)      :: 15 of 105
            Pseudo Genes (multiple problems)  :: 30 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4683498
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_16"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCI010000001-JBTWCI010000034
WGS_SCAFLD  NZ_JBTWCI010000001-NZ_JBTWCI010000034
//
LOCUS       NZ_JBTWCJ010000000   4700892 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_15, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCJ000000000
VERSION     NZ_JBTWCJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711994
            Assembly: GCF_056775335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4700892)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4700892)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCJ000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCJ000000000.  This version of the project
            (01) has the accession number NZ_JBTWCJ010000000, and consists of
            sequences JBTWCJ010000001-JBTWCJ010000042.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:47:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,566
            CDSs (total)                      :: 4,484
            Genes (coding)                    :: 4,357
            CDSs (with protein)               :: 4,357
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 51 of 127
            Pseudo Genes (incomplete)         :: 93 of 127
            Pseudo Genes (internal stop)      :: 17 of 127
            Pseudo Genes (multiple problems)  :: 32 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4700892
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_15"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCJ010000001-JBTWCJ010000042
WGS_SCAFLD  NZ_JBTWCJ010000001-NZ_JBTWCJ010000042
//
LOCUS       NZ_JBTVYB010000000   4934267 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 4-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVYB000000000
VERSION     NZ_JBTVYB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708964
            Assembly: GCF_056775155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4934267)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4934267)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVYB000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVYB000000000.  This version of the project
            (01) has the accession number NZ_JBTVYB010000000, and consists of
            sequences JBTVYB010000001-JBTVYB010000071.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:01:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,925
            CDSs (total)                      :: 4,842
            Genes (coding)                    :: 4,633
            CDSs (with protein)               :: 4,633
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 64
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 209
            CDSs (without protein)            :: 209
            Pseudo Genes (ambiguous residues) :: 0 of 209
            Pseudo Genes (frameshifted)       :: 75 of 209
            Pseudo Genes (incomplete)         :: 157 of 209
            Pseudo Genes (internal stop)      :: 37 of 209
            Pseudo Genes (multiple problems)  :: 52 of 209
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934267
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="4-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVYB010000001-JBTVYB010000071
WGS_SCAFLD  NZ_JBTVYB010000001-NZ_JBTVYB010000071
//
LOCUS       NZ_JBTWCK010000000   4878331 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain CP06182_14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTWCK000000000
VERSION     NZ_JBTWCK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54711993
            Assembly: GCF_056775355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4878331)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4878331)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTWCK000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTWCK000000000.  This version of the project
            (01) has the accession number NZ_JBTWCK010000000, and consists of
            sequences JBTWCK010000001-JBTWCK010000047.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. 4.1.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 180x
            Sequencing Technology  :: Element
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:45:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,878
            CDSs (total)                      :: 4,794
            Genes (coding)                    :: 4,638
            CDSs (with protein)               :: 4,638
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 72 of 156
            Pseudo Genes (incomplete)         :: 111 of 156
            Pseudo Genes (internal stop)      :: 22 of 156
            Pseudo Genes (multiple problems)  :: 42 of 156
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4878331
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="CP06182_14"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTWCK010000001-JBTWCK010000047
WGS_SCAFLD  NZ_JBTWCK010000001-NZ_JBTWCK010000047
//
LOCUS       NZ_JBTVXU010000000   4700892 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 15-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXU000000000
VERSION     NZ_JBTVXU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708971
            Assembly: GCF_056775035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4700892)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4700892)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXU000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXU000000000.  This version of the project
            (01) has the accession number NZ_JBTVXU010000000, and consists of
            sequences JBTVXU010000001-JBTVXU010000042.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056775035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:52:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,566
            CDSs (total)                      :: 4,484
            Genes (coding)                    :: 4,357
            CDSs (with protein)               :: 4,357
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 51 of 127
            Pseudo Genes (incomplete)         :: 93 of 127
            Pseudo Genes (internal stop)      :: 17 of 127
            Pseudo Genes (multiple problems)  :: 32 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4700892
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="15-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXU010000001-JBTVXU010000042
WGS_SCAFLD  NZ_JBTVXU010000001-NZ_JBTVXU010000042
//
LOCUS       NZ_JBTVXP010000000   4870132 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 21-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXP000000000
VERSION     NZ_JBTVXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708976
            Assembly: GCF_056774915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4870132)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4870132)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXP000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXP000000000.  This version of the project
            (01) has the accession number NZ_JBTVXP010000000, and consists of
            sequences JBTVXP010000001-JBTVXP010000070.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056774915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:55:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,820
            CDSs (total)                      :: 4,736
            Genes (coding)                    :: 4,585
            CDSs (with protein)               :: 4,585
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 48 of 151
            Pseudo Genes (incomplete)         :: 116 of 151
            Pseudo Genes (internal stop)      :: 22 of 151
            Pseudo Genes (multiple problems)  :: 32 of 151
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870132
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="21-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXP010000001-JBTVXP010000070
WGS_SCAFLD  NZ_JBTVXP010000001-NZ_JBTVXP010000070
//
LOCUS       NZ_JBTVXR010000000   4859818 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Salmonella enterica strain 19-CP06182, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBTVXR000000000
VERSION     NZ_JBTVXR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN54708974
            Assembly: GCF_056774955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4859818)
  AUTHORS   Oh,S., Haley,B.J. and Patel,J.
  TITLE     Whole-Genome Analysis Revealed Antimicrobial Resistance and
            Virulence-Associated Genome Features in Environmental Salmonella
            enterica Isolates from Creek Sediments in the Mid-Atlantic United
            States
  JOURNAL   Microbiol Res (Pavia) 17 (4), 72 (2026)
  REMARK    DOI: 10.3390/microbiolres17040072
REFERENCE   2  (bases 1 to 4859818)
  AUTHORS   Oh,S. and Patel,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2026) ARS-EMFSL, USDA, 10300 Baltimore Ave,
            Beltsville, MD 20705, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBTVXR000000000.1.
            The Salmonella enterica whole genome shotgun (WGS) project has the
            project accession NZ_JBTVXR000000000.  This version of the project
            (01) has the accession number NZ_JBTVXR010000000, and consists of
            sequences JBTVXR010000001-JBTVXR010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 18-MAR-2025
            Assembly Method        :: SPAdes v. March 2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: ELEMENT
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056774955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:56:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,853
            CDSs (total)                      :: 4,773
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 74 of 160
            Pseudo Genes (incomplete)         :: 111 of 160
            Pseudo Genes (internal stop)      :: 24 of 160
            Pseudo Genes (multiple problems)  :: 42 of 160
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4859818
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="19-CP06182"
                     /isolation_source="Creek Sediments"
                     /db_xref="taxon:28901"
                     /collection_date="2019/2021"
                     /collected_by="USDA"
WGS         JBTVXR010000001-JBTVXR010000043
WGS_SCAFLD  NZ_JBTVXR010000001-NZ_JBTVXR010000043
//
LOCUS       NZ_JAAGOJ010000000   5114102 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain S697, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAGOJ000000000
VERSION     NZ_JAAGOJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14013646
            Assembly: GCF_010499415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5114102)
  AUTHORS   Xiao,X.
  TITLE     epidemic Serratia marcescens clones
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5114102)
  AUTHORS   Xiao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2020) Department of Laboratory Medicine, Peking
            University, North Garden Road 49, Beijing, Beijing 100191, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGOJ000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JAAGOJ000000000.  This version of the project
            (01) has the accession number NZ_JAAGOJ010000000, and consists of
            sequences JAAGOJ010000001-JAAGOJ010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010499415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:07:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,904
            CDSs (total)                      :: 4,791
            Genes (coding)                    :: 4,771
            CDSs (with protein)               :: 4,771
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 2, 5 (5S, 16S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 17 of 22
            Pseudo Genes (internal stop)      :: 1 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5114102
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="S697"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="China"
                     /lat_lon="39.56 N 116.20 E"
                     /collection_date="2017-11-08"
                     /collected_by="puh3"
WGS         JAAGOJ010000001-JAAGOJ010000020
WGS_SCAFLD  NZ_JAAGOJ010000001-NZ_JAAGOJ010000020
//
LOCUS       NZ_JAAGOK010000000   5113992 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain S708, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAGOK000000000
VERSION     NZ_JAAGOK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14013647
            Assembly: GCF_010499445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5113992)
  AUTHORS   Xiao,X.
  TITLE     epidemic Serratia marcescens clones
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5113992)
  AUTHORS   Xiao,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2020) Department of Laboratory Medicine, Peking
            University, North Garden Road 49, Beijing, Beijing 100191, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAGOK000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JAAGOK000000000.  This version of the project
            (01) has the accession number NZ_JAAGOK010000000, and consists of
            sequences JAAGOK010000001-JAAGOK010000019.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010499445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:09:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,903
            CDSs (total)                      :: 4,792
            Genes (coding)                    :: 4,771
            CDSs (with protein)               :: 4,771
            Genes (RNA)                       :: 111
            rRNAs                             :: 8, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3 (5S, 16S)
            tRNAs                             :: 83
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 23
            CDSs (without protein)            :: 21
            Pseudo Genes (ambiguous residues) :: 0 of 23
            Pseudo Genes (frameshifted)       :: 7 of 23
            Pseudo Genes (incomplete)         :: 18 of 23
            Pseudo Genes (internal stop)      :: 1 of 23
            Pseudo Genes (multiple problems)  :: 5 of 23
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5113992
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="S708"
                     /isolation_source="Tracheal aspiration"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="China"
                     /lat_lon="39.56 N 116.20 E"
                     /collection_date="2017-10-19"
                     /collected_by="puh3"
WGS         JAAGOK010000001-JAAGOK010000019
WGS_SCAFLD  NZ_JAAGOK010000001-NZ_JAAGOK010000019
//
LOCUS       NZ_JABDSP010000000   5156262 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain 50995, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JABDSP000000000
VERSION     NZ_JABDSP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14120179
            Assembly: GCF_013277715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5156262)
  AUTHORS   Keck,N., Dunie-Merigot,A., Dazas,M., Hirchaud,E., Laurence,S.,
            Gervais,B., Madec,J.Y. and Haenni,M.
  TITLE     Long-lasting nosocomial persistence of chlorhexidine-resistant
            Serratia marcescens in a veterinary hospital
  JOURNAL   Vet Microbiol 245, 108686 (2020)
   PUBMED   32456825
REFERENCE   2  (bases 1 to 5156262)
  AUTHORS   Keck,N., Dunie-Merigot,A., Dazas,M., Hirchaud,E., Laurence,S.,
            Gervais,B., Madec,J.-Y. and Haenni,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2020) AVB, ANSES, 31 Avenue Tony Garnier, Lyon
            69007, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABDSP000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JABDSP000000000.  This version of the project
            (01) has the accession number NZ_JABDSP010000000, and consists of
            sequences JABDSP010000001-JABDSP010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 31-DEC-2019
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013277715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:30:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,903
            CDSs (total)                      :: 4,795
            Genes (coding)                    :: 4,772
            CDSs (with protein)               :: 4,772
            Genes (RNA)                       :: 108
            rRNAs                             :: 6, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 23
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 17 of 24
            Pseudo Genes (internal stop)      :: 4 of 24
            Pseudo Genes (multiple problems)  :: 4 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5156262
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="50995"
                     /host="Felis silvestris"
                     /db_xref="taxon:615"
                     /geo_loc_name="France"
                     /collection_date="2014-08-25"
WGS         JABDSP010000001-JABDSP010000025
WGS_SCAFLD  NZ_JABDSP010000001-NZ_JABDSP010000025
//
LOCUS       NZ_LNTW01000000      2208223 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain MMP2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LNTW00000000
VERSION     NZ_LNTW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04296816
            Assembly: GCF_002026385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2208223)
  AUTHORS   Kashuba,E., Dmitriev,A., Griva,G., Melefors,O., Ernberg,I.,
            Kashuba,V. and Brouchkov,A.
  TITLE     Ancient permafrost Staphylococcus resemble modern strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2208223)
  AUTHORS   Kashuba,E., Dmitriev,A., Griva,G., Melefors,O., Ernberg,I.,
            Kashuba,V. and Brouchkov,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2015) Department of Microbiology, Tumor and Cell
            Biology (MTC), Karolinska Institutet, Nobels Vag, Stockholm SE-171
            77, Sweden
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LNTW00000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_LNTW00000000.  This version of the project
            (01) has the accession number NZ_LNTW01000000, and consists of
            sequences LNTW01000001-LNTW01000074.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: GS De Novo Assembler v. 2.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002026385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:41:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,259
            CDSs (total)                      :: 2,189
            Genes (coding)                    :: 2,123
            CDSs (with protein)               :: 2,123
            Genes (RNA)                       :: 70
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 20 of 66
            Pseudo Genes (incomplete)         :: 47 of 66
            Pseudo Genes (internal stop)      :: 10 of 66
            Pseudo Genes (multiple problems)  :: 10 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208223
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="MMP2"
                     /isolation_source="Ancient permafrost from Mammoth
                     Mountain"
                     /db_xref="taxon:1290"
                     /geo_loc_name="Russia: Mammoth Mountain, Aldan River
                     Valley, Central Yakutia (Eastern Siberia)"
                     /collection_date="2009-07"
WGS         LNTW01000001-LNTW01000074
WGS_SCAFLD  NZ_LNTW01000001-NZ_LNTW01000074
//
LOCUS       NZ_JBVWDT010000000   2482273 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus epidermidis strain Sepi_C107, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBVWDT000000000
VERSION     NZ_JBVWDT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56390538
            Assembly: GCF_056770495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2482273)
  AUTHORS   Evers,A.N., De Nisco,N., Dong,X. and Dillon,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2026) Biological Sciences, University of Texas at
            Dallas, 800 West Cambell Rd, Richardson, TX 75080, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBVWDT000000000.1.
            The Staphylococcus epidermidis whole genome shotgun (WGS) project
            has the project accession NZ_JBVWDT000000000.  This version of the
            project (01) has the accession number NZ_JBVWDT010000000, and
            consists of sequences JBVWDT010000001-JBVWDT010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 03-NOV-2025
            Assembly Method        :: Unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 115.0x
            Sequencing Technology  :: Oxford Nanopore; Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056770495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:47:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,368
            CDSs (total)                      :: 2,288
            Genes (coding)                    :: 2,228
            CDSs (with protein)               :: 2,228
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 31 of 60
            Pseudo Genes (incomplete)         :: 37 of 60
            Pseudo Genes (internal stop)      :: 20 of 60
            Pseudo Genes (multiple problems)  :: 21 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482273
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="Sepi_C107"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1282"
                     /geo_loc_name="USA: Dallas"
                     /lat_lon="32.82057999 N 96.84792371 W"
                     /collection_date="2019-04-08"
                     /collected_by="Nicole De Nisco"
WGS         JBVWDT010000001-JBVWDT010000003
WGS_SCAFLD  NZ_CM165266
WGS_SCAFLD  NZ_JBVWDT010000002-NZ_JBVWDT010000003
//
LOCUS       NZ_PZIN01000000      2515489 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain SNUC 1361, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZIN00000000
VERSION     NZ_PZIN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173059
            Assembly: GCF_003042515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2515489)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515489)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZIN00000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_PZIN00000000.  This version of the
            project (01) has the accession number NZ_PZIN01000000, and consists
            of sequences PZIN01000001-PZIN01000100.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 55x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003042515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:08:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,546
            CDSs (total)                      :: 2,458
            Genes (coding)                    :: 2,396
            CDSs (with protein)               :: 2,396
            Genes (RNA)                       :: 88
            rRNAs                             :: 8, 8, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1 (5S, 23S)
            partial rRNAs                     :: 8, 3 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 18 of 62
            Pseudo Genes (incomplete)         :: 37 of 62
            Pseudo Genes (internal stop)      :: 15 of 62
            Pseudo Genes (multiple problems)  :: 8 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515489
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1361"
                     /isolation_source="Herd 415"
                     /host="Bos taurus"
                     /db_xref="taxon:1283"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2008-07-07"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZIN01000001-PZIN01000100
WGS_SCAFLD  NZ_PZIN01000001-NZ_PZIN01000100
//
LOCUS       NZ_LSKZ01000000      2463311 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus capitis strain MF1871, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LSKZ00000000
VERSION     NZ_LSKZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04479465
            Assembly: GCF_001651285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus capitis
  ORGANISM  Staphylococcus capitis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2463311)
  AUTHORS   Fagerlund,A., Langsrud,S., Heir,E., Mikkelsen,M.I. and Moretro,T.
  TITLE     Biofilm Matrix Composition Affects the Susceptibility of Food
            Associated Staphylococci to Cleaning and Disinfection Agents
  JOURNAL   Front Microbiol 7, 856 (2016)
   PUBMED   27375578
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463311)
  AUTHORS   Fagerlund,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2016) Division Food Science, Nofima, Osloveien 1,
            AAs NO-1430, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LSKZ00000000.1.
            The Staphylococcus capitis whole genome shotgun (WGS) project has
            the project accession NZ_LSKZ00000000.  This version of the project
            (01) has the accession number NZ_LSKZ01000000, and consists of
            sequences LSKZ01000001-LSKZ01000046.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-DEC-2015
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001651285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,444
            CDSs (total)                      :: 2,376
            Genes (coding)                    :: 2,338
            CDSs (with protein)               :: 2,338
            Genes (RNA)                       :: 68
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 3 (23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 15 of 38
            Pseudo Genes (incomplete)         :: 21 of 38
            Pseudo Genes (internal stop)      :: 8 of 38
            Pseudo Genes (multiple problems)  :: 6 of 38
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463311
                     /organism="Staphylococcus capitis"
                     /mol_type="genomic DNA"
                     /strain="MF1871"
                     /isolation_source="Bakery industry product"
                     /db_xref="taxon:29388"
                     /geo_loc_name="Norway"
                     /collected_by="Nofima"
WGS         LSKZ01000001-LSKZ01000046
WGS_SCAFLD  NZ_LSKZ01000001-NZ_LSKZ01000046
//
LOCUS       NZ_LSLA01000000      2471539 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus capitis strain MF1872, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LSLA00000000
VERSION     NZ_LSLA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04479466
            Assembly: GCF_001651335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus capitis
  ORGANISM  Staphylococcus capitis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2471539)
  AUTHORS   Fagerlund,A., Langsrud,S., Heir,E., Mikkelsen,M.I. and Moretro,T.
  TITLE     Biofilm Matrix Composition Affects the Susceptibility of Food
            Associated Staphylococci to Cleaning and Disinfection Agents
  JOURNAL   Front Microbiol 7, 856 (2016)
   PUBMED   27375578
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471539)
  AUTHORS   Fagerlund,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2016) Division Food Science, Nofima, Osloveien 1,
            AAs NO-1430, Norway
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LSLA00000000.1.
            The Staphylococcus capitis whole genome shotgun (WGS) project has
            the project accession NZ_LSLA00000000.  This version of the project
            (01) has the accession number NZ_LSLA01000000, and consists of
            sequences LSLA01000001-LSLA01000045.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 15-DEC-2015
            Assembly Method        :: SPAdes v. 3.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 71.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001651335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,452
            CDSs (total)                      :: 2,388
            Genes (coding)                    :: 2,347
            CDSs (with protein)               :: 2,347
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 3 (16S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 16 of 41
            Pseudo Genes (incomplete)         :: 25 of 41
            Pseudo Genes (internal stop)      :: 7 of 41
            Pseudo Genes (multiple problems)  :: 7 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471539
                     /organism="Staphylococcus capitis"
                     /mol_type="genomic DNA"
                     /strain="MF1872"
                     /isolation_source="Poultry"
                     /db_xref="taxon:29388"
                     /geo_loc_name="Norway"
                     /collection_date="1990"
                     /collected_by="Nofima"
WGS         LSLA01000001-LSLA01000045
WGS_SCAFLD  NZ_LSLA01000001-NZ_LSLA01000045
//
LOCUS       NZ_QQPJ01000000      2670859 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius strain ST496-6, whole genome
            shotgun sequencing project.
ACCESSION   NZ_QQPJ00000000
VERSION     NZ_QQPJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09708405
            Assembly: GCF_003383925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2670859)
  AUTHORS   Worthing,K.A., Brown,J., Gerber,L., Abraham,S., Trott,D. and
            Norris,J.M.
  TITLE     Molecular epidemiology of methicillin-resistant staphylococci
            amongst veterinary personnel, personnel-owned pets, patients and
            the hospital environment of two companion animal veterinary
            hospitals
  JOURNAL   Vet. Microbiol. (2018) In press
REFERENCE   2  (bases 1 to 2670859)
  AUTHORS   Worthing,K.A., Brown,J., Gerber,L., Abraham,S., Trott,D. and
            Norris,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2018) Sydney School of Veterinary Science,
            University of Sydney, Parramatta Rd, Sydney, NSW 2006, Australia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QQPJ00000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_QQPJ00000000.  This version of
            the project (01) has the accession number NZ_QQPJ01000000, and
            consists of sequences QQPJ01000001-QQPJ01000084.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2017
            Assembly Method        :: CLC NGS Cell v. 10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003383925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:14:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,596
            CDSs (total)                      :: 2,553
            Genes (coding)                    :: 2,485
            CDSs (with protein)               :: 2,485
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 18 of 68
            Pseudo Genes (incomplete)         :: 50 of 68
            Pseudo Genes (internal stop)      :: 11 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670859
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="ST496-6"
                     /isolation_source="nares"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:283734"
                     /geo_loc_name="Australia: Sydney"
                     /collection_date="2017"
                     /collected_by="University of Sydney"
WGS         QQPJ01000001-QQPJ01000084
WGS_SCAFLD  NZ_QQPJ01000001-NZ_QQPJ01000084
//
LOCUS       NZ_QHIN01000000      2642475 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius strain SP87a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QHIN00000000
VERSION     NZ_QHIN00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09258680
            Assembly: GCF_004166535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2642475)
  AUTHORS   Nisa,S., Bercker,C., Midwinter,A.C., Bruce,I., Graham,C.F.,
            Venter,P., Bell,A., French,N.P., Benschop,J., Bailey,K.M. and
            Wilkinson,D.A.
  TITLE     Combining MALDI-TOF and genomics in the study of methicillin
            resistant and multidrug resistant Staphylococcus pseudintermedius
            in New Zealand
  JOURNAL   Sci Rep 9 (1), 1271 (2019)
   PUBMED   30718644
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642475)
  AUTHORS   Wilkinson,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2018) School of Veterinary Science, Massey
            University, Molecular Epidemiology and Public Health Laboratory
            (mEpiLab), Hopkirk Research Institute, Massey Un, Palmerston North,
            Manawatu 4474, New Zealand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QHIN00000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_QHIN00000000.  This version of
            the project (01) has the accession number NZ_QHIN01000000, and
            consists of sequences QHIN01000001-QHIN01000077.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 31-JAN-2018
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 122x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004166535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:29:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,581
            CDSs (total)                      :: 2,496
            Genes (coding)                    :: 2,425
            CDSs (with protein)               :: 2,425
            Genes (RNA)                       :: 85
            rRNAs                             :: 7, 10, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 9, 3 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 17 of 71
            Pseudo Genes (incomplete)         :: 55 of 71
            Pseudo Genes (internal stop)      :: 17 of 71
            Pseudo Genes (multiple problems)  :: 15 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642475
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="SP87a"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:283734"
                     /geo_loc_name="New Zealand"
                     /collection_date="2016"
WGS         QHIN01000001-QHIN01000077
WGS_SCAFLD  NZ_QHIN01000001-NZ_QHIN01000077
//
LOCUS       NZ_QHIS01000000      2684582 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius strain SP53a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QHIS00000000
VERSION     NZ_QHIS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09258675
            Assembly: GCF_004166575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2684582)
  AUTHORS   Nisa,S., Bercker,C., Midwinter,A.C., Bruce,I., Graham,C.F.,
            Venter,P., Bell,A., French,N.P., Benschop,J., Bailey,K.M. and
            Wilkinson,D.A.
  TITLE     Combining MALDI-TOF and genomics in the study of methicillin
            resistant and multidrug resistant Staphylococcus pseudintermedius
            in New Zealand
  JOURNAL   Sci Rep 9 (1), 1271 (2019)
   PUBMED   30718644
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684582)
  AUTHORS   Wilkinson,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2018) School of Veterinary Science, Massey
            University, Molecular Epidemiology and Public Health Laboratory
            (mEpiLab), Hopkirk Research Institute, Massey Un, Palmerston North,
            Manawatu 4474, New Zealand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QHIS00000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_QHIS00000000.  This version of
            the project (01) has the accession number NZ_QHIS01000000, and
            consists of sequences QHIS01000001-QHIS01000079.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 31-JAN-2018
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004166575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:39:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,672
            CDSs (total)                      :: 2,590
            Genes (coding)                    :: 2,527
            CDSs (with protein)               :: 2,527
            Genes (RNA)                       :: 82
            rRNAs                             :: 6, 10, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 9, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 16 of 63
            Pseudo Genes (incomplete)         :: 50 of 63
            Pseudo Genes (internal stop)      :: 12 of 63
            Pseudo Genes (multiple problems)  :: 13 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684582
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="SP53a"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:283734"
                     /geo_loc_name="New Zealand"
                     /collection_date="2016"
WGS         QHIS01000001-QHIS01000079
WGS_SCAFLD  NZ_QHIS01000001-NZ_QHIS01000079
//
LOCUS       NZ_CDSEHV010000000   5064914 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Salipiger bermudensis isolate MarMAG_005438, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDSEHV000000000
VERSION     NZ_CDSEHV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120656648
            Assembly: GCF_977135265.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Salipiger bermudensis (marine metagenome)
  ORGANISM  Salipiger bermudensis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Roseobacteraceae; Salipiger.
REFERENCE   1  (bases 1 to 5064914)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDSEHV000000000.1.
            The Salipiger bermudensis whole genome shotgun (WGS) project has
            the project accession NZ_CDSEHV000000000.  This version of the
            project (01) has the accession number NZ_CDSEHV010000000, and
            consists of sequences CDSEHV010000001-CDSEHV010000081.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977135265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:38:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,813
            CDSs (total)                      :: 4,770
            Genes (coding)                    :: 4,725
            CDSs (with protein)               :: 4,725
            Genes (RNA)                       :: 43
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 6 of 45
            Pseudo Genes (incomplete)         :: 34 of 45
            Pseudo Genes (internal stop)      :: 10 of 45
            Pseudo Genes (multiple problems)  :: 4 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5064914
                     /organism="Salipiger bermudensis"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_005438"
                     /db_xref="taxon:344736"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         CDSEHV010000001-CDSEHV010000081
WGS_SCAFLD  NZ_CDSEHV010000001-NZ_CDSEHV010000081
//
LOCUS       NZ_QHJC01000000      2638918 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius strain SP18a, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QHJC00000000
VERSION     NZ_QHJC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09258665
            Assembly: GCF_004166875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2638918)
  AUTHORS   Nisa,S., Bercker,C., Midwinter,A.C., Bruce,I., Graham,C.F.,
            Venter,P., Bell,A., French,N.P., Benschop,J., Bailey,K.M. and
            Wilkinson,D.A.
  TITLE     Combining MALDI-TOF and genomics in the study of methicillin
            resistant and multidrug resistant Staphylococcus pseudintermedius
            in New Zealand
  JOURNAL   Sci Rep 9 (1), 1271 (2019)
   PUBMED   30718644
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2638918)
  AUTHORS   Wilkinson,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2018) School of Veterinary Science, Massey
            University, Molecular Epidemiology and Public Health Laboratory
            (mEpiLab), Hopkirk Research Institute, Massey Un, Palmerston North,
            Manawatu 4474, New Zealand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QHJC00000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_QHJC00000000.  This version of
            the project (01) has the accession number NZ_QHJC01000000, and
            consists of sequences QHJC01000001-QHJC01000088.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 31-JAN-2018
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 108x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004166875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:35:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,599
            CDSs (total)                      :: 2,515
            Genes (coding)                    :: 2,443
            CDSs (with protein)               :: 2,443
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 10, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 9, 3 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 13 of 72
            Pseudo Genes (incomplete)         :: 60 of 72
            Pseudo Genes (internal stop)      :: 11 of 72
            Pseudo Genes (multiple problems)  :: 10 of 72
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638918
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="SP18a"
                     /host="Canis lupus familiaris"
                     /db_xref="taxon:283734"
                     /geo_loc_name="New Zealand"
                     /collection_date="2016"
WGS         QHJC01000001-QHJC01000088
WGS_SCAFLD  NZ_QHJC01000001-NZ_QHJC01000088
//
LOCUS       NZ_JBAJWB010000000   5143479 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Serratia marcescens strain MIC00066006, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBAJWB000000000
VERSION     NZ_JBAJWB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39983288
            Assembly: GCF_048963205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Serratia marcescens
  ORGANISM  Serratia marcescens
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Serratia.
REFERENCE   1  (bases 1 to 5143479)
  AUTHORS   Boceska,B.K.
  TITLE     Identification of potential novel combination antibiotic regimens
            based on drug-susceptibility and genetic diversity of Gram-negative
            bacteria causing neonatal sepsis in low- and middle-income
            countries
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5143479)
  AUTHORS   Lin,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2024) Laboratory of Medical Microbiology,
            University of Antwerp, Universiteitsplein, 1, Wilrijk 2610, Belgium
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBAJWB000000000.1.
            The Serratia marcescens whole genome shotgun (WGS) project has the
            project accession NZ_JBAJWB000000000.  This version of the project
            (01) has the accession number NZ_JBAJWB010000000, and consists of
            sequences JBAJWB010000001-JBAJWB010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v.3.11.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_048963205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:13:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,935
            CDSs (total)                      :: 4,847
            Genes (coding)                    :: 4,825
            CDSs (with protein)               :: 4,825
            Genes (RNA)                       :: 88
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 6 of 24
            Pseudo Genes (incomplete)         :: 18 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 3 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5143479
                     /organism="Serratia marcescens"
                     /mol_type="genomic DNA"
                     /strain="MIC00066006"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:615"
                     /geo_loc_name="Greece: Thessaloniki"
                     /lat_lon="40.643611 N 22.930861 E"
                     /collection_date="2019-12-06"
                     /collected_by="NeoOBS Study"
WGS         JBAJWB010000001-JBAJWB010000029
WGS_SCAFLD  NZ_JBAJWB010000001-NZ_JBAJWB010000029
//
LOCUS       NZ_SCHB01000000      2770273 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain E7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SCHB00000000
VERSION     NZ_SCHB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10735326
            Assembly: GCF_004329485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2770273)
  AUTHORS   Williams,M.R.
  TITLE     Quorum sensing between bacterial species on the skin protects
            against epidermal injury in atopic dermatitis
  JOURNAL   Sci Transl Med (2019) In press
REFERENCE   2  (bases 1 to 2770273)
  AUTHORS   Williams,M.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2019) Dermatology, University of California San
            Diego, 9500 Gilman Drive, San Diego, CA 92093, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SCHB00000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_SCHB00000000.  This version of the
            project (01) has the accession number NZ_SCHB01000000, and consists
            of sequences SCHB01000001-SCHB01000510.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 99x
            Sequencing Technology  :: Illumina Miseq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004329485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:39:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,991
            CDSs (total)                      :: 2,914
            Genes (coding)                    :: 2,692
            CDSs (with protein)               :: 2,692
            Genes (RNA)                       :: 77
            rRNAs                             :: 6, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (16S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 222
            CDSs (without protein)            :: 222
            Pseudo Genes (ambiguous residues) :: 0 of 222
            Pseudo Genes (frameshifted)       :: 11 of 222
            Pseudo Genes (incomplete)         :: 198 of 222
            Pseudo Genes (internal stop)      :: 29 of 222
            Pseudo Genes (multiple problems)  :: 15 of 222
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2770273
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="E7"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA: California"
                     /lat_lon="32.71 N 117.16 W"
                     /collection_date="2017-07"
WGS         SCHB01000001-SCHB01000510
WGS_SCAFLD  NZ_SCHB01000001-NZ_SCHB01000510
//
LOCUS       NZ_FUDP01000000      4657768 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Shigella sonnei strain sh1470, whole genome shotgun sequencing
            project.
ACCESSION   NZ_FUDP00000000
VERSION     NZ_FUDP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA1569834
            Assembly: GCF_900160525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Shigella sonnei
  ORGANISM  Shigella sonnei
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1
  CONSRTM   Pathogen Informatics
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2017) WTSI, Pathogen Informatics, Wellcome Trust
            Sanger Institute, CB10 1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            FUDP00000000.1.
            The Shigella sonnei whole genome shotgun (WGS) project has the
            project accession NZ_FUDP00000000.  This version of the project
            (01) has the accession number NZ_FUDP01000000, and consists of
            sequences FUDP01000001-FUDP01000371.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_900160525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,951
            CDSs (total)                      :: 4,850
            Genes (coding)                    :: 4,280
            CDSs (with protein)               :: 4,280
            Genes (RNA)                       :: 101
            rRNAs                             :: 6, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 570
            CDSs (without protein)            :: 570
            Pseudo Genes (ambiguous residues) :: 0 of 570
            Pseudo Genes (frameshifted)       :: 134 of 570
            Pseudo Genes (incomplete)         :: 400 of 570
            Pseudo Genes (internal stop)      :: 92 of 570
            Pseudo Genes (multiple problems)  :: 51 of 570
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4657768
                     /organism="Shigella sonnei"
                     /mol_type="genomic DNA"
                     /strain="sh1470"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:624"
                     /geo_loc_name="Costa Rica"
                     /collection_date="2006"
WGS         FUDP01000001-FUDP01000371
WGS_SCAFLD  NZ_FUDP01000001-NZ_FUDP01000371
//
LOCUS       NZ_JACMRY010000000   2633858 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain HD104N11, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACMRY000000000
VERSION     NZ_JACMRY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15759555
            Assembly: GCF_016904985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2633858)
  AUTHORS   Both,A., Huang,J., Qi,M., Lausmann,C., Weisselberg,S., Buttner,H.,
            Lezius,S., Failla,A.V., Christner,M., Stegger,M., Gehrke,T.,
            Baig,S., Citak,M., Alawi,M., Aepfelbacher,M. and Rohde,H.
  TITLE     Distinct clonal lineages and within-host diversification shape
            invasive Staphylococcus epidermidis populations
  JOURNAL   PLoS Pathog 17 (2), e1009304 (2021)
   PUBMED   33544760
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633858)
  AUTHORS   Both,A., Huang,J., Qi,M., Lausmann,C., Weisselberg,S., Buettner,H.,
            Lezius,S., Failla,A.V., Christner,M., Gehrke,T., Alawi,M.,
            Aepfelbacher,M. and Rohde,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-AUG-2020) Institute of Medical Microbiology, Virology
            and Hygiene, University Medical Center Hamburg-Eppendorf,
            Martinistr. 52, Hamburg, Hamburg 20246, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACMRY000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JACMRY000000000.  This version of the
            project (01) has the accession number NZ_JACMRY010000000, and
            consists of sequences JACMRY010000001-JACMRY010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 165x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016904985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:31:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,574
            CDSs (total)                      :: 2,517
            Genes (coding)                    :: 2,449
            CDSs (with protein)               :: 2,449
            Genes (RNA)                       :: 57
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 22 of 68
            Pseudo Genes (incomplete)         :: 46 of 68
            Pseudo Genes (internal stop)      :: 12 of 68
            Pseudo Genes (multiple problems)  :: 10 of 68
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633858
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="HD104N11"
                     /isolation_source="nose; prosthetic joint infection"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="Germany: Hamburg"
                     /lat_lon="53.33 N 10.1 E"
                     /collection_date="2018"
                     /collected_by="Institute of Medical Microbiology, Virology
                     and Hygiene, University Medical Center Hamburg-Eppendorf"
WGS         JACMRY010000001-JACMRY010000040
WGS_SCAFLD  NZ_JACMRY010000001-NZ_JACMRY010000040
//
LOCUS       NZ_CAJETK010000000   2562361 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius isolate 18S03470-1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAJETK000000000
VERSION     NZ_CAJETK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7087036
            Assembly: GCF_903992325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2562361)
  AUTHORS   Van Der Graaf,L., Duim,B. and Zomer,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2020) UTRECHT UNIVERSITY, Clinical Infectiology,
            Yalelaan 1, 3584 CL, Utrecht, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJETK000000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_CAJETK000000000.  This version
            of the project (01) has the accession number NZ_CAJETK010000000,
            and consists of sequences CAJETK010000001-CAJETK010000076.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903992325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:38:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,491
            CDSs (total)                      :: 2,439
            Genes (coding)                    :: 2,371
            CDSs (with protein)               :: 2,371
            Genes (RNA)                       :: 52
            rRNAs                             :: 3, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 3 (5S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 17 of 68
            Pseudo Genes (incomplete)         :: 58 of 68
            Pseudo Genes (internal stop)      :: 5 of 68
            Pseudo Genes (multiple problems)  :: 11 of 68
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562361
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /isolate="18S03470-1"
                     /isolation_source="dog"
                     /db_xref="taxon:283734"
WGS         CAJETK010000001-CAJETK010000076
WGS_SCAFLD  NZ_CAJETK010000001-NZ_CAJETK010000076
//
LOCUS       NZ_PZCF01000000      2364790 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 133, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCF00000000
VERSION     NZ_PZCF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172878
            Assembly: GCF_003040395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2364790)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2364790)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCF00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCF00000000.  This version of the
            project (01) has the accession number NZ_PZCF01000000, and consists
            of sequences PZCF01000001-PZCF01000158.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 49x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040395.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:07:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,427
            CDSs (total)                      :: 2,352
            Genes (coding)                    :: 2,286
            CDSs (with protein)               :: 2,286
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 8, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7 (16S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 18 of 66
            Pseudo Genes (incomplete)         :: 48 of 66
            Pseudo Genes (internal stop)      :: 7 of 66
            Pseudo Genes (multiple problems)  :: 7 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364790
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 133"
                     /isolation_source="Herd 107"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-07-02"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCF01000001-PZCF01000158
WGS_SCAFLD  NZ_PZCF01000001-NZ_PZCF01000158
//
LOCUS       NZ_CAJESB010000000   2588831 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius isolate 17S01339-1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAJESB000000000
VERSION     NZ_CAJESB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7087021
            Assembly: GCF_903991935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2588831)
  AUTHORS   Van Der Graaf,L., Duim,B. and Zomer,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2020) UTRECHT UNIVERSITY, Clinical Infectiology,
            Yalelaan 1, 3584 CL, Utrecht, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJESB000000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_CAJESB000000000.  This version
            of the project (01) has the accession number NZ_CAJESB010000000,
            and consists of sequences CAJESB010000001-CAJESB010000051.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903991935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:48:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,529
            CDSs (total)                      :: 2,469
            Genes (coding)                    :: 2,410
            CDSs (with protein)               :: 2,410
            Genes (RNA)                       :: 60
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 15 of 59
            Pseudo Genes (incomplete)         :: 44 of 59
            Pseudo Genes (internal stop)      :: 15 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588831
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /isolate="17S01339-1"
                     /isolation_source="dog"
                     /db_xref="taxon:283734"
WGS         CAJESB010000001-CAJESB010000051
WGS_SCAFLD  NZ_CAJESB010000001-NZ_CAJESB010000051
//
LOCUS       NZ_QXRI01000000      2363128 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 429, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXRI00000000
VERSION     NZ_QXRI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172885
            Assembly: GCF_003578545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2363128)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363128)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXRI00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_QXRI00000000.  This version of the
            project (01) has the accession number NZ_QXRI01000000, and consists
            of sequences QXRI01000001-QXRI01000148.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 38x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:21:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,397
            CDSs (total)                      :: 2,319
            Genes (coding)                    :: 2,265
            CDSs (with protein)               :: 2,265
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 11, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 10, 2 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 9 of 54
            Pseudo Genes (incomplete)         :: 45 of 54
            Pseudo Genes (internal stop)      :: 5 of 54
            Pseudo Genes (multiple problems)  :: 5 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363128
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 429"
                     /isolation_source="Herd 108"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2008-04-08"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXRI01000001-QXRI01000148
WGS_SCAFLD  NZ_QXRI01000001-NZ_QXRI01000148
//
LOCUS       NZ_JAKVDP010000000   2476873 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 030P3NS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVDP000000000
VERSION     NZ_JAKVDP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185777
            Assembly: GCF_022485965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2476873)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2476873)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVDP000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVDP000000000.  This version of the
            project (01) has the accession number NZ_JAKVDP010000000, and
            consists of sequences JAKVDP010000001-JAKVDP010000076.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:56:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,480
            CDSs (total)                      :: 2,436
            Genes (coding)                    :: 2,375
            CDSs (with protein)               :: 2,375
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 18 of 61
            Pseudo Genes (incomplete)         :: 35 of 61
            Pseudo Genes (internal stop)      :: 13 of 61
            Pseudo Genes (multiple problems)  :: 5 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476873
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="030P3NS2"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVDP010000001-JAKVDP010000076
WGS_SCAFLD  NZ_JAKVDP010000001-NZ_JAKVDP010000076
//
LOCUS       NZ_PZCB01000000      2384669 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 265, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCB00000000
VERSION     NZ_PZCB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172882
            Assembly: GCF_003039655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2384669)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384669)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCB00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCB00000000.  This version of the
            project (01) has the accession number NZ_PZCB01000000, and consists
            of sequences PZCB01000001-PZCB01000099.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 59x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:04:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,457
            CDSs (total)                      :: 2,370
            Genes (coding)                    :: 2,314
            CDSs (with protein)               :: 2,314
            Genes (RNA)                       :: 87
            rRNAs                             :: 6, 15, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 15, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 10 of 56
            Pseudo Genes (incomplete)         :: 46 of 56
            Pseudo Genes (internal stop)      :: 5 of 56
            Pseudo Genes (multiple problems)  :: 5 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384669
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 265"
                     /isolation_source="Herd 101"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2008-12-10"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCB01000001-PZCB01000099
WGS_SCAFLD  NZ_PZCB01000001-NZ_PZCB01000099
//
LOCUS       NZ_CAJETI010000000   2577876 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius isolate 18S03461-1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAJETI000000000
VERSION     NZ_CAJETI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA7087025
            Assembly: GCF_903992315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2577876)
  AUTHORS   Van Der Graaf,L., Duim,B. and Zomer,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2020) UTRECHT UNIVERSITY, Clinical Infectiology,
            Yalelaan 1, 3584 CL, Utrecht, Netherlands
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAJETI000000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_CAJETI000000000.  This version
            of the project (01) has the accession number NZ_CAJETI010000000,
            and consists of sequences CAJETI010000001-CAJETI010000075.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_903992315.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:51:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,510
            CDSs (total)                      :: 2,453
            Genes (coding)                    :: 2,392
            CDSs (with protein)               :: 2,392
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 14 of 61
            Pseudo Genes (incomplete)         :: 45 of 61
            Pseudo Genes (internal stop)      :: 15 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577876
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /isolate="18S03461-1"
                     /isolation_source="dog"
                     /db_xref="taxon:283734"
WGS         CAJETI010000001-CAJETI010000075
WGS_SCAFLD  NZ_CAJETI010000001-NZ_CAJETI010000075
//
LOCUS       NZ_QXRA01000000      2362855 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1386, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXRA00000000
VERSION     NZ_QXRA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172916
            Assembly: GCF_003578265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2362855)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362855)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXRA00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_QXRA00000000.  This version of the
            project (01) has the accession number NZ_QXRA01000000, and consists
            of sequences QXRA01000001-QXRA01000047.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 117x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:15:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,396
            CDSs (total)                      :: 2,315
            Genes (coding)                    :: 2,259
            CDSs (with protein)               :: 2,259
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 8, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7 (16S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 15 of 56
            Pseudo Genes (incomplete)         :: 40 of 56
            Pseudo Genes (internal stop)      :: 4 of 56
            Pseudo Genes (multiple problems)  :: 3 of 56
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362855
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1386"
                     /isolation_source="Herd 204"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-08-14"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXRA01000001-QXRA01000047
WGS_SCAFLD  NZ_QXRA01000001-NZ_QXRA01000047
//
LOCUS       NZ_JALCVT010000000   2189068 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain acrmp, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCVT000000000
VERSION     NZ_JALCVT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962519
            Assembly: GCF_022690265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2189068)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2189068)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCVT000000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_JALCVT000000000.  This version of the
            project (01) has the accession number NZ_JALCVT010000000, and
            consists of sequences JALCVT010000001-JALCVT010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 88x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022690265.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:06:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,175
            CDSs (total)                      :: 2,129
            Genes (coding)                    :: 2,089
            CDSs (with protein)               :: 2,089
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 8 of 40
            Pseudo Genes (incomplete)         :: 29 of 40
            Pseudo Genes (internal stop)      :: 9 of 40
            Pseudo Genes (multiple problems)  :: 6 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189068
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="acrmp"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCVT010000001-JALCVT010000022
WGS_SCAFLD  NZ_JALCVT010000001-NZ_JALCVT010000022
//
LOCUS       NZ_QXRF01000000      2296423 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1158, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXRF00000000
VERSION     NZ_QXRF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172897
            Assembly: GCF_003578525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2296423)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296423)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXRF00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_QXRF00000000.  This version of the
            project (01) has the accession number NZ_QXRF01000000, and consists
            of sequences QXRF01000001-QXRF01000246.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 25x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:14:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,327
            CDSs (total)                      :: 2,253
            Genes (coding)                    :: 2,196
            CDSs (with protein)               :: 2,196
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 8, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 2 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 13 of 57
            Pseudo Genes (incomplete)         :: 45 of 57
            Pseudo Genes (internal stop)      :: 5 of 57
            Pseudo Genes (multiple problems)  :: 6 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296423
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1158"
                     /isolation_source="Herd 404"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2008-02-05"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXRF01000001-QXRF01000246
WGS_SCAFLD  NZ_QXRF01000001-NZ_QXRF01000246
//
LOCUS       NZ_JAKVGN010000000   2455995 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 038P2NS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVGN000000000
VERSION     NZ_JAKVGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185701
            Assembly: GCF_022486545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2455995)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2455995)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVGN000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVGN000000000.  This version of the
            project (01) has the accession number NZ_JAKVGN010000000, and
            consists of sequences JAKVGN010000001-JAKVGN010000097.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022486545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:58:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,460
            CDSs (total)                      :: 2,403
            Genes (coding)                    :: 2,346
            CDSs (with protein)               :: 2,346
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 21 of 57
            Pseudo Genes (incomplete)         :: 28 of 57
            Pseudo Genes (internal stop)      :: 11 of 57
            Pseudo Genes (multiple problems)  :: 3 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455995
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="038P2NS2"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVGN010000001-JAKVGN010000097
WGS_SCAFLD  NZ_JAKVGN010000001-NZ_JAKVGN010000097
//
LOCUS       NZ_PZCK01000000      2309112 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 110, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCK00000000
VERSION     NZ_PZCK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172873
            Assembly: GCF_003039775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2309112)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309112)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCK00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCK00000000.  This version of the
            project (01) has the accession number NZ_PZCK01000000, and consists
            of sequences PZCK01000001-PZCK01000076.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 48x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:01:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,322
            CDSs (total)                      :: 2,238
            Genes (coding)                    :: 2,184
            CDSs (with protein)               :: 2,184
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 11, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 10, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 14 of 54
            Pseudo Genes (incomplete)         :: 41 of 54
            Pseudo Genes (internal stop)      :: 5 of 54
            Pseudo Genes (multiple problems)  :: 6 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309112
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 110"
                     /isolation_source="Herd 107"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-06-04"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCK01000001-PZCK01000076
WGS_SCAFLD  NZ_PZCK01000001-NZ_PZCK01000076
//
LOCUS       NZ_JALCWA010000000   2225880 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain acrmh, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCWA000000000
VERSION     NZ_JALCWA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962511
            Assembly: GCF_022690105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2225880)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2225880)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCWA000000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_JALCWA000000000.  This version of the
            project (01) has the accession number NZ_JALCWA010000000, and
            consists of sequences JALCWA010000001-JALCWA010000053.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 86x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022690105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:10:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,223
            CDSs (total)                      :: 2,178
            Genes (coding)                    :: 2,134
            CDSs (with protein)               :: 2,134
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 44
            CDSs (without protein)            :: 44
            Pseudo Genes (ambiguous residues) :: 0 of 44
            Pseudo Genes (frameshifted)       :: 10 of 44
            Pseudo Genes (incomplete)         :: 35 of 44
            Pseudo Genes (internal stop)      :: 6 of 44
            Pseudo Genes (multiple problems)  :: 6 of 44
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225880
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="acrmh"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCWA010000001-JALCWA010000053
WGS_SCAFLD  NZ_JALCWA010000001-NZ_JALCWA010000053
//
LOCUS       NZ_JAKVGV010000000   2448864 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 038P1SUD1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVGV000000000
VERSION     NZ_JAKVGV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185693
            Assembly: GCF_022487885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2448864)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2448864)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVGV000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVGV000000000.  This version of the
            project (01) has the accession number NZ_JAKVGV010000000, and
            consists of sequences JAKVGV010000001-JAKVGV010000084.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022487885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:06:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,451
            CDSs (total)                      :: 2,397
            Genes (coding)                    :: 2,339
            CDSs (with protein)               :: 2,339
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 21 of 58
            Pseudo Genes (incomplete)         :: 29 of 58
            Pseudo Genes (internal stop)      :: 11 of 58
            Pseudo Genes (multiple problems)  :: 3 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2448864
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="038P1SUD1"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVGV010000001-JAKVGV010000084
WGS_SCAFLD  NZ_JAKVGV010000001-NZ_JAKVGV010000084
//
LOCUS       NZ_QXRB01000000      2266227 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1379, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXRB00000000
VERSION     NZ_QXRB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172914
            Assembly: GCF_003578285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2266227)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266227)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXRB00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_QXRB00000000.  This version of the
            project (01) has the accession number NZ_QXRB01000000, and consists
            of sequences QXRB01000001-QXRB01000199.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:17:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,296
            CDSs (total)                      :: 2,209
            Genes (coding)                    :: 2,146
            CDSs (with protein)               :: 2,146
            Genes (RNA)                       :: 87
            rRNAs                             :: 6, 9, 12 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 9, 12 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 19 of 63
            Pseudo Genes (incomplete)         :: 41 of 63
            Pseudo Genes (internal stop)      :: 13 of 63
            Pseudo Genes (multiple problems)  :: 8 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266227
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1379"
                     /isolation_source="Herd 403"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2009-01-06"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXRB01000001-QXRB01000199
WGS_SCAFLD  NZ_QXRB01000001-NZ_QXRB01000199
//
LOCUS       NZ_JAKRKP010000000   2598745 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain P2-40, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKRKP000000000
VERSION     NZ_JAKRKP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24838647
            Assembly: GCF_022569155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2598745)
  AUTHORS   Flannagan,R.S., Brozyna,J.R., Kumar,B., Adolf,L.A., Power,J.J.,
            Heilbronner,S. and Heinrichs,D.E.
  TITLE     In vivo growth of Staphylococcus lugdunensis is facilitated by the
            concerted function of heme and non-heme iron acquisition mechanisms
  JOURNAL   J Biol Chem 298 (5), 101823 (2022)
   PUBMED   35283192
REFERENCE   2  (bases 1 to 2598745)
  AUTHORS   Power,J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2022) Infection Biology, CMFI, Auf der
            Morgenstelle 28/E8, Tuebingen, Baden-Wuerttemberg 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKRKP000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JAKRKP000000000.  This version of the
            project (01) has the accession number NZ_JAKRKP010000000, and
            consists of sequences JAKRKP010000001-JAKRKP010000033.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2022
            Assembly Method        :: nf-core/bacass v. 2.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 164x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022569155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:09:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,506
            CDSs (total)                      :: 2,444
            Genes (coding)                    :: 2,389
            CDSs (with protein)               :: 2,389
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 20 of 55
            Pseudo Genes (incomplete)         :: 30 of 55
            Pseudo Genes (internal stop)      :: 15 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598745
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="P2-40"
                     /isolation_source="Nasal cavity"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="Germany: Tuebingen"
                     /collection_date="2016-07"
WGS         JAKRKP010000001-JAKRKP010000033
WGS_SCAFLD  NZ_JAKRKP010000001-NZ_JAKRKP010000033
//
LOCUS       NZ_QXRE01000000      2368728 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1348, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXRE00000000
VERSION     NZ_QXRE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172905
            Assembly: GCF_003578495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2368728)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368728)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXRE00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_QXRE00000000.  This version of the
            project (01) has the accession number NZ_QXRE01000000, and consists
            of sequences QXRE01000001-QXRE01000077.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:17:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,393
            CDSs (total)                      :: 2,305
            Genes (coding)                    :: 2,229
            CDSs (with protein)               :: 2,229
            Genes (RNA)                       :: 88
            rRNAs                             :: 8, 8, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 5 (16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 21 of 76
            Pseudo Genes (incomplete)         :: 51 of 76
            Pseudo Genes (internal stop)      :: 22 of 76
            Pseudo Genes (multiple problems)  :: 15 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368728
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1348"
                     /isolation_source="Herd 202"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-07-09"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXRE01000001-QXRE01000077
WGS_SCAFLD  NZ_QXRE01000001-NZ_QXRE01000077
//
LOCUS       NZ_JAKRKO010000000   2576831 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain E1-36, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKRKO000000000
VERSION     NZ_JAKRKO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24838648
            Assembly: GCF_022569135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2576831)
  AUTHORS   Flannagan,R.S., Brozyna,J.R., Kumar,B., Adolf,L.A., Power,J.J.,
            Heilbronner,S. and Heinrichs,D.E.
  TITLE     In vivo growth of Staphylococcus lugdunensis is facilitated by the
            concerted function of heme and non-heme iron acquisition mechanisms
  JOURNAL   J Biol Chem 298 (5), 101823 (2022)
   PUBMED   35283192
REFERENCE   2  (bases 1 to 2576831)
  AUTHORS   Power,J.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2022) Infection Biology, CMFI, Auf der
            Morgenstelle 28/E8, Tuebingen, Baden-Wuerttemberg 72076, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKRKO000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JAKRKO000000000.  This version of the
            project (01) has the accession number NZ_JAKRKO010000000, and
            consists of sequences JAKRKO010000001-JAKRKO010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2022
            Assembly Method        :: nf-core/bacass v. 2.0.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 135x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022569135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:08:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,494
            CDSs (total)                      :: 2,433
            Genes (coding)                    :: 2,379
            CDSs (with protein)               :: 2,379
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 20 of 54
            Pseudo Genes (incomplete)         :: 29 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 7 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576831
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="E1-36"
                     /isolation_source="Nasal cavity"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="Germany: Tuebingen"
                     /collection_date="2016-07"
WGS         JAKRKO010000001-JAKRKO010000037
WGS_SCAFLD  NZ_JAKRKO010000001-NZ_JAKRKO010000037
//
LOCUS       NZ_PZCG01000000      2333758 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 132, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCG00000000
VERSION     NZ_PZCG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172877
            Assembly: GCF_003040415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2333758)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333758)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCG00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCG00000000.  This version of the
            project (01) has the accession number NZ_PZCG01000000, and consists
            of sequences PZCG01000001-PZCG01000189.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:09:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,391
            CDSs (total)                      :: 2,315
            Genes (coding)                    :: 2,248
            CDSs (with protein)               :: 2,248
            Genes (RNA)                       :: 76
            rRNAs                             :: 6, 9, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8, 2 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 12 of 67
            Pseudo Genes (incomplete)         :: 50 of 67
            Pseudo Genes (internal stop)      :: 9 of 67
            Pseudo Genes (multiple problems)  :: 4 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333758
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 132"
                     /isolation_source="Herd 102"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2008-01-31"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCG01000001-PZCG01000189
WGS_SCAFLD  NZ_PZCG01000001-NZ_PZCG01000189
//
LOCUS       NZ_JALCWE010000000   2267685 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hominis strain acrlt, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCWE000000000
VERSION     NZ_JALCWE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962497
            Assembly: GCF_022690045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hominis
  ORGANISM  Staphylococcus hominis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2267685)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2267685)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCWE000000000.1.
            The Staphylococcus hominis whole genome shotgun (WGS) project has
            the project accession NZ_JALCWE000000000.  This version of the
            project (01) has the accession number NZ_JALCWE010000000, and
            consists of sequences JALCWE010000001-JALCWE010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 79x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022690045.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:13:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,298
            CDSs (total)                      :: 2,251
            Genes (coding)                    :: 2,194
            CDSs (with protein)               :: 2,194
            Genes (RNA)                       :: 47
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 20 of 57
            Pseudo Genes (incomplete)         :: 40 of 57
            Pseudo Genes (internal stop)      :: 15 of 57
            Pseudo Genes (multiple problems)  :: 13 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267685
                     /organism="Staphylococcus hominis"
                     /mol_type="genomic DNA"
                     /strain="acrlt"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1290"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCWE010000001-JALCWE010000028
WGS_SCAFLD  NZ_JALCWE010000001-NZ_JALCWE010000028
//
LOCUS       NZ_JALCXK010000000   2545528 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain acrng, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCXK000000000
VERSION     NZ_JALCXK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962536
            Assembly: GCF_022689405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2545528)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2545528)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCXK000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JALCXK000000000.  This version of the
            project (01) has the accession number NZ_JALCXK010000000, and
            consists of sequences JALCXK010000001-JALCXK010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 86x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022689405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:16:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,447
            CDSs (total)                      :: 2,388
            Genes (coding)                    :: 2,337
            CDSs (with protein)               :: 2,337
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 18 of 51
            Pseudo Genes (incomplete)         :: 26 of 51
            Pseudo Genes (internal stop)      :: 16 of 51
            Pseudo Genes (multiple problems)  :: 7 of 51
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545528
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="acrng"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCXK010000001-JALCXK010000038
WGS_SCAFLD  NZ_JALCXK010000001-NZ_JALCXK010000038
//
LOCUS       NZ_PZCC01000000      2320517 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 255, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCC00000000
VERSION     NZ_PZCC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172881
            Assembly: GCF_003039675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2320517)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320517)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCC00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCC00000000.  This version of the
            project (01) has the accession number NZ_PZCC01000000, and consists
            of sequences PZCC01000001-PZCC01000084.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 54x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039675.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:58:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,329
            CDSs (total)                      :: 2,248
            Genes (coding)                    :: 2,191
            CDSs (with protein)               :: 2,191
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 8, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 3 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 15 of 57
            Pseudo Genes (incomplete)         :: 45 of 57
            Pseudo Genes (internal stop)      :: 6 of 57
            Pseudo Genes (multiple problems)  :: 6 of 57
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320517
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 255"
                     /isolation_source="Herd 103"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-08-08"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCC01000001-PZCC01000084
WGS_SCAFLD  NZ_PZCC01000001-NZ_PZCC01000084
//
LOCUS       NZ_PPQI01000000      2467992 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus capitis subsp. urealyticus strain DSM 6717, whole
            genome shotgun sequencing project.
ACCESSION   NZ_PPQI00000000
VERSION     NZ_PPQI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05978025
            Assembly: GCF_002901925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus capitis subsp. urealyticus
  ORGANISM  Staphylococcus capitis subsp. urealyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2467992)
  AUTHORS   Cole,K., Golubchik,T., Russell,J., Foster,D., Llewelyn,M.,
            Wilson,D., Crook,D. and Paul,J.
  TITLE     Draft genome sequences of 64 type strains of genus Staph aureus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2467992)
  AUTHORS   Cole,K., Golubchik,T., Russell,J., Foster,D., Llewelyn,M.,
            Wilson,D., Crook,D. and Paul,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2017) Nuffield Department of Medicine, Oxford
            University, Headley Way, Oxford OX3 9DU, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PPQI00000000.1.
            The Staphylococcus capitis subsp. urealyticus whole genome shotgun
            (WGS) project has the project accession NZ_PPQI00000000.  This
            version of the project (01) has the accession number
            NZ_PPQI01000000, and consists of sequences
            PPQI01000001-PPQI01000184.
            Bacteria available from DSMZ.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 22-FEB-2017
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35.79x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002901925.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:12:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,500
            CDSs (total)                      :: 2,430
            Genes (coding)                    :: 2,346
            CDSs (with protein)               :: 2,346
            Genes (RNA)                       :: 70
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 4 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 11 of 84
            Pseudo Genes (incomplete)         :: 76 of 84
            Pseudo Genes (internal stop)      :: 6 of 84
            Pseudo Genes (multiple problems)  :: 8 of 84
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467992
                     /organism="Staphylococcus capitis subsp. urealyticus"
                     /mol_type="genomic DNA"
                     /strain="DSM 6717"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /sub_species="urealyticus"
                     /culture_collection="DSM:6717"
                     /type_material="type strain of Staphylococcus capitis
                     subsp. urealyticus"
                     /db_xref="taxon:74703"
                     /geo_loc_name="Germany: Braunschweig"
                     /collection_date="1991-01-01"
                     /collected_by="ModMedMicOxford"
WGS         PPQI01000001-PPQI01000184
WGS_SCAFLD  NZ_PPQI01000001-NZ_PPQI01000184
//
LOCUS       NZ_JBBLTI010000000   2665414 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain JONWP143, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBLTI000000000
VERSION     NZ_JBBLTI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39542702
            Assembly: GCF_037694565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2665414)
  AUTHORS   Sonnert,N.D., Rosen,C.E., Ghazi,A.R., Franzosa,E.A.,
            Duncan-Lowey,B., Gonzalez-Hernandez,J.A., Huck,J.D., Yang,Y.,
            Dai,Y., Rice,T.A., Nguyen,M.T., Song,D., Cao,Y., Martin,A.L.,
            Bielecka,A.A., Fischer,S., Guan,C., Oh,J., Huttenhower,C.,
            Ring,A.M. and Palm,N.W.
  TITLE     A host-microbiota interactome reveals extensive transkingdom
            connectivity
  JOURNAL   Nature 628 (8006), 171-179 (2024)
   PUBMED   38509360
REFERENCE   2  (bases 1 to 2665414)
  AUTHORS   Sonnert,N.D., Yang,Y., Oh,J. and Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) Immunobiology, Yale University, 1 Gilbert
            St. Rm S540, New Haven, CT 06519, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBLTI000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JBBLTI000000000.  This version of the
            project (01) has the accession number NZ_JBBLTI010000000, and
            consists of sequences JBBLTI010000001-JBBLTI010000363.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037694565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:22:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,803
            CDSs (total)                      :: 2,741
            Genes (coding)                    :: 2,589
            CDSs (with protein)               :: 2,589
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1, 3 (5S, 16S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 13 of 152
            Pseudo Genes (incomplete)         :: 142 of 152
            Pseudo Genes (internal stop)      :: 7 of 152
            Pseudo Genes (multiple problems)  :: 8 of 152
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2665414
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="JONWP143"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA: New Haven, CT"
                     /lat_lon="41.3083 N 72.9279 W"
                     /collection_date="2022-08"
WGS         JBBLTI010000001-JBBLTI010000363
WGS_SCAFLD  NZ_JBBLTI010000001-NZ_JBBLTI010000363
//
LOCUS       NZ_PZCA01000000      2283263 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 277, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCA00000000
VERSION     NZ_PZCA00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172883
            Assembly: GCF_003040375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2283263)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2283263)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCA00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCA00000000.  This version of the
            project (01) has the accession number NZ_PZCA01000000, and consists
            of sequences PZCA01000001-PZCA01000190.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:01:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,314
            CDSs (total)                      :: 2,234
            Genes (coding)                    :: 2,167
            CDSs (with protein)               :: 2,167
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 10, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 9, 2 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 14 of 67
            Pseudo Genes (incomplete)         :: 51 of 67
            Pseudo Genes (internal stop)      :: 9 of 67
            Pseudo Genes (multiple problems)  :: 6 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2283263
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 277"
                     /isolation_source="Herd 101"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2008-06-30"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCA01000001-PZCA01000190
WGS_SCAFLD  NZ_PZCA01000001-NZ_PZCA01000190
//
LOCUS       NZ_QXQW01000000      2250281 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1776, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QXQW00000000
VERSION     NZ_QXQW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172923
            Assembly: GCF_003578185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2250281)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250281)
  AUTHORS   Naushad,S. and De Buck,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QXQW00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_QXQW00000000.  This version of the
            project (01) has the accession number NZ_QXQW01000000, and consists
            of sequences QXQW01000001-QXQW01000092.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 34x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003578185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:14:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,249
            CDSs (total)                      :: 2,168
            Genes (coding)                    :: 2,129
            CDSs (with protein)               :: 2,129
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 8, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 39
            CDSs (without protein)            :: 39
            Pseudo Genes (ambiguous residues) :: 0 of 39
            Pseudo Genes (frameshifted)       :: 10 of 39
            Pseudo Genes (incomplete)         :: 28 of 39
            Pseudo Genes (internal stop)      :: 6 of 39
            Pseudo Genes (multiple problems)  :: 5 of 39
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250281
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1776"
                     /isolation_source="Herd 203"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2008-04-24"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         QXQW01000001-QXQW01000092
WGS_SCAFLD  NZ_QXQW01000001-NZ_QXQW01000092
//
LOCUS       NZ_JBBLTR010000000   2628655 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain JONWP133, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBLTR000000000
VERSION     NZ_JBBLTR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39542692
            Assembly: GCF_037695005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2628655)
  AUTHORS   Sonnert,N.D., Rosen,C.E., Ghazi,A.R., Franzosa,E.A.,
            Duncan-Lowey,B., Gonzalez-Hernandez,J.A., Huck,J.D., Yang,Y.,
            Dai,Y., Rice,T.A., Nguyen,M.T., Song,D., Cao,Y., Martin,A.L.,
            Bielecka,A.A., Fischer,S., Guan,C., Oh,J., Huttenhower,C.,
            Ring,A.M. and Palm,N.W.
  TITLE     A host-microbiota interactome reveals extensive transkingdom
            connectivity
  JOURNAL   Nature 628 (8006), 171-179 (2024)
   PUBMED   38509360
REFERENCE   2  (bases 1 to 2628655)
  AUTHORS   Sonnert,N.D., Yang,Y., Oh,J. and Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) Immunobiology, Yale University, 1 Gilbert
            St. Rm S540, New Haven, CT 06519, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBLTR000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JBBLTR000000000.  This version of the
            project (01) has the accession number NZ_JBBLTR010000000, and
            consists of sequences JBBLTR010000001-JBBLTR010000333.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037695005.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:21:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,717
            CDSs (total)                      :: 2,656
            Genes (coding)                    :: 2,521
            CDSs (with protein)               :: 2,521
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 13 of 135
            Pseudo Genes (incomplete)         :: 128 of 135
            Pseudo Genes (internal stop)      :: 7 of 135
            Pseudo Genes (multiple problems)  :: 11 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628655
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="JONWP133"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA: New Haven, CT"
                     /lat_lon="41.3083 N 72.9279 W"
                     /collection_date="2022-08"
WGS         JBBLTR010000001-JBBLTR010000333
WGS_SCAFLD  NZ_JBBLTR010000001-NZ_JBBLTR010000333
//
LOCUS       NZ_PZAM01000000      2315145 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1374, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAM00000000
VERSION     NZ_PZAM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172912
            Assembly: GCF_003040175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2315145)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315145)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAM00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAM00000000.  This version of the
            project (01) has the accession number NZ_PZAM01000000, and consists
            of sequences PZAM01000001-PZAM01000065.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 48x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040175.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:04:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,325
            CDSs (total)                      :: 2,245
            Genes (coding)                    :: 2,185
            CDSs (with protein)               :: 2,185
            Genes (RNA)                       :: 80
            rRNAs                             :: 7, 7, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6, 4 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 20 of 60
            Pseudo Genes (incomplete)         :: 42 of 60
            Pseudo Genes (internal stop)      :: 9 of 60
            Pseudo Genes (multiple problems)  :: 9 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315145
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1374"
                     /isolation_source="Herd 404"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2008-12-08"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAM01000001-PZAM01000065
WGS_SCAFLD  NZ_PZAM01000001-NZ_PZAM01000065
//
LOCUS       NZ_PZBX01000000      2344809 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 744, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZBX00000000
VERSION     NZ_PZBX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172889
            Assembly: GCF_003039595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2344809)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2344809)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZBX00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZBX00000000.  This version of the
            project (01) has the accession number NZ_PZBX01000000, and consists
            of sequences PZBX01000001-PZBX01000136.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 43x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:59:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,365
            CDSs (total)                      :: 2,282
            Genes (coding)                    :: 2,219
            CDSs (with protein)               :: 2,219
            Genes (RNA)                       :: 83
            rRNAs                             :: 6, 11, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 10, 2 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 12 of 63
            Pseudo Genes (incomplete)         :: 53 of 63
            Pseudo Genes (internal stop)      :: 4 of 63
            Pseudo Genes (multiple problems)  :: 6 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344809
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 744"
                     /isolation_source="Herd 116"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-08-02"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZBX01000001-PZBX01000136
WGS_SCAFLD  NZ_PZBX01000001-NZ_PZBX01000136
//
LOCUS       NZ_JBBLTT010000000   2607890 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain JONWP131, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBLTT000000000
VERSION     NZ_JBBLTT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39542690
            Assembly: GCF_037700085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2607890)
  AUTHORS   Sonnert,N.D., Rosen,C.E., Ghazi,A.R., Franzosa,E.A.,
            Duncan-Lowey,B., Gonzalez-Hernandez,J.A., Huck,J.D., Yang,Y.,
            Dai,Y., Rice,T.A., Nguyen,M.T., Song,D., Cao,Y., Martin,A.L.,
            Bielecka,A.A., Fischer,S., Guan,C., Oh,J., Huttenhower,C.,
            Ring,A.M. and Palm,N.W.
  TITLE     A host-microbiota interactome reveals extensive transkingdom
            connectivity
  JOURNAL   Nature 628 (8006), 171-179 (2024)
   PUBMED   38509360
REFERENCE   2  (bases 1 to 2607890)
  AUTHORS   Sonnert,N.D., Yang,Y., Oh,J. and Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) Immunobiology, Yale University, 1 Gilbert
            St. Rm S540, New Haven, CT 06519, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBLTT000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JBBLTT000000000.  This version of the
            project (01) has the accession number NZ_JBBLTT010000000, and
            consists of sequences JBBLTT010000001-JBBLTT010000352.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037700085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:28:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,725
            CDSs (total)                      :: 2,662
            Genes (coding)                    :: 2,518
            CDSs (with protein)               :: 2,518
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1, 4 (5S, 16S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 19 of 144
            Pseudo Genes (incomplete)         :: 118 of 144
            Pseudo Genes (internal stop)      :: 18 of 144
            Pseudo Genes (multiple problems)  :: 10 of 144
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607890
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="JONWP131"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA: New Haven, CT"
                     /lat_lon="41.3083 N 72.9279 W"
                     /collection_date="2022-08"
WGS         JBBLTT010000001-JBBLTT010000352
WGS_SCAFLD  NZ_JBBLTT010000001-NZ_JBBLTT010000352
//
LOCUS       NZ_PZCE01000000      2315875 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 134, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCE00000000
VERSION     NZ_PZCE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172879
            Assembly: GCF_003039715.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2315875)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2315875)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCE00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCE00000000.  This version of the
            project (01) has the accession number NZ_PZCE01000000, and consists
            of sequences PZCE01000001-PZCE01000160.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:02:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,356
            CDSs (total)                      :: 2,275
            Genes (coding)                    :: 2,204
            CDSs (with protein)               :: 2,204
            Genes (RNA)                       :: 81
            rRNAs                             :: 6, 8, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 3 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 71
            CDSs (without protein)            :: 71
            Pseudo Genes (ambiguous residues) :: 0 of 71
            Pseudo Genes (frameshifted)       :: 19 of 71
            Pseudo Genes (incomplete)         :: 49 of 71
            Pseudo Genes (internal stop)      :: 9 of 71
            Pseudo Genes (multiple problems)  :: 4 of 71
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315875
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 134"
                     /isolation_source="Herd 103"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-07-10"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCE01000001-PZCE01000160
WGS_SCAFLD  NZ_PZCE01000001-NZ_PZCE01000160
//
LOCUS       NZ_PZCD01000000      2253881 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 235, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCD00000000
VERSION     NZ_PZCD00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172880
            Assembly: GCF_003039695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2253881)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253881)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCD00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCD00000000.  This version of the
            project (01) has the accession number NZ_PZCD01000000, and consists
            of sequences PZCD01000001-PZCD01000054.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:05:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,259
            CDSs (total)                      :: 2,185
            Genes (coding)                    :: 2,142
            CDSs (with protein)               :: 2,142
            Genes (RNA)                       :: 74
            rRNAs                             :: 5, 8, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 18 of 43
            Pseudo Genes (incomplete)         :: 25 of 43
            Pseudo Genes (internal stop)      :: 6 of 43
            Pseudo Genes (multiple problems)  :: 4 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253881
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 235"
                     /isolation_source="Herd 105"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-09-28"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCD01000001-PZCD01000054
WGS_SCAFLD  NZ_PZCD01000001-NZ_PZCD01000054
//
LOCUS       NZ_JBBLTS010000000   2620463 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus lugdunensis strain JONWP132, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBLTS000000000
VERSION     NZ_JBBLTS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39542691
            Assembly: GCF_037700005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus lugdunensis
  ORGANISM  Staphylococcus lugdunensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2620463)
  AUTHORS   Sonnert,N.D., Rosen,C.E., Ghazi,A.R., Franzosa,E.A.,
            Duncan-Lowey,B., Gonzalez-Hernandez,J.A., Huck,J.D., Yang,Y.,
            Dai,Y., Rice,T.A., Nguyen,M.T., Song,D., Cao,Y., Martin,A.L.,
            Bielecka,A.A., Fischer,S., Guan,C., Oh,J., Huttenhower,C.,
            Ring,A.M. and Palm,N.W.
  TITLE     A host-microbiota interactome reveals extensive transkingdom
            connectivity
  JOURNAL   Nature 628 (8006), 171-179 (2024)
   PUBMED   38509360
REFERENCE   2  (bases 1 to 2620463)
  AUTHORS   Sonnert,N.D., Yang,Y., Oh,J. and Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) Immunobiology, Yale University, 1 Gilbert
            St. Rm S540, New Haven, CT 06519, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBLTS000000000.1.
            The Staphylococcus lugdunensis whole genome shotgun (WGS) project
            has the project accession NZ_JBBLTS000000000.  This version of the
            project (01) has the accession number NZ_JBBLTS010000000, and
            consists of sequences JBBLTS010000001-JBBLTS010000370.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037700005.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:26:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,775
            CDSs (total)                      :: 2,709
            Genes (coding)                    :: 2,550
            CDSs (with protein)               :: 2,550
            Genes (RNA)                       :: 66
            rRNAs                             :: 2, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 8 of 159
            Pseudo Genes (incomplete)         :: 149 of 159
            Pseudo Genes (internal stop)      :: 8 of 159
            Pseudo Genes (multiple problems)  :: 6 of 159
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620463
                     /organism="Staphylococcus lugdunensis"
                     /mol_type="genomic DNA"
                     /strain="JONWP132"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:28035"
                     /geo_loc_name="USA: New Haven, CT"
                     /lat_lon="41.3083 N 72.9279 W"
                     /collection_date="2022-08"
WGS         JBBLTS010000001-JBBLTS010000370
WGS_SCAFLD  NZ_JBBLTS010000001-NZ_JBBLTS010000370
//
LOCUS       NZ_PZCP01000000      2334856 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 65, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCP00000000
VERSION     NZ_PZCP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172868
            Assembly: GCF_003040495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2334856)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334856)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCP00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCP00000000.  This version of the
            project (01) has the accession number NZ_PZCP01000000, and consists
            of sequences PZCP01000001-PZCP01000162.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:07:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,376
            CDSs (total)                      :: 2,311
            Genes (coding)                    :: 2,246
            CDSs (with protein)               :: 2,246
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 13 of 65
            Pseudo Genes (incomplete)         :: 52 of 65
            Pseudo Genes (internal stop)      :: 5 of 65
            Pseudo Genes (multiple problems)  :: 5 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334856
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 65"
                     /isolation_source="Herd 102"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-03-13"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCP01000001-PZCP01000162
WGS_SCAFLD  NZ_PZCP01000001-NZ_PZCP01000162
//
LOCUS       NZ_PZAG01000000      2306989 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 2109, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAG00000000
VERSION     NZ_PZAG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172925
            Assembly: GCF_003040095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2306989)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306989)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAG00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAG00000000.  This version of the
            project (01) has the accession number NZ_PZAG01000000, and consists
            of sequences PZAG01000001-PZAG01000042.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 66x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040095.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:06:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,342
            CDSs (total)                      :: 2,264
            Genes (coding)                    :: 2,206
            CDSs (with protein)               :: 2,206
            Genes (RNA)                       :: 78
            rRNAs                             :: 7, 9, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8 (16S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 22 of 58
            Pseudo Genes (incomplete)         :: 35 of 58
            Pseudo Genes (internal stop)      :: 10 of 58
            Pseudo Genes (multiple problems)  :: 8 of 58
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306989
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 2109"
                     /isolation_source="Herd 316"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="2007-08-01"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAG01000001-PZAG01000042
WGS_SCAFLD  NZ_PZAG01000001-NZ_PZAG01000042
//
LOCUS       NZ_JAWCVU010000000   2474745 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hyicus strain X5447, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAWCVU000000000
VERSION     NZ_JAWCVU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37641190
            Assembly: GCF_038377825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hyicus
  ORGANISM  Staphylococcus hyicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2474745)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Genomic analysis of multi-drug resistant coagulase-negative
            staphylococci from healthy humans and animals revealed mobilomes of
            unusual mechanisms and CRISPR-Cas system
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2474745)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2023) Agricultura y Alimentacion, Universidad de
            La Rioja, Calle Madre de Dios 53, Logrono 26004, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWCVU000000000.1.
            The Staphylococcus hyicus whole genome shotgun (WGS) project has
            the project accession NZ_JAWCVU000000000.  This version of the
            project (01) has the accession number NZ_JAWCVU010000000, and
            consists of sequences JAWCVU010000001-JAWCVU010000053.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Unknown
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038377825.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:43:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,454
            CDSs (total)                      :: 2,385
            Genes (coding)                    :: 2,344
            CDSs (with protein)               :: 2,344
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 16 of 41
            Pseudo Genes (incomplete)         :: 29 of 41
            Pseudo Genes (internal stop)      :: 6 of 41
            Pseudo Genes (multiple problems)  :: 8 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474745
                     /organism="Staphylococcus hyicus"
                     /mol_type="genomic DNA"
                     /strain="X5447"
                     /isolation_source="nasal"
                     /host="pig"
                     /db_xref="taxon:1284"
                     /geo_loc_name="Spain"
                     /collection_date="2022-07-07"
WGS         JAWCVU010000001-JAWCVU010000053
WGS_SCAFLD  NZ_JAWCVU010000001-NZ_JAWCVU010000053
//
LOCUS       NZ_PZAH01000000      2284377 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 2004, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAH00000000
VERSION     NZ_PZAH00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172924
            Assembly: GCF_003040115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2284377)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2284377)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAH00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAH00000000.  This version of the
            project (01) has the accession number NZ_PZAH01000000, and consists
            of sequences PZAH01000001-PZAH01000194.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 29x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:21:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,318
            CDSs (total)                      :: 2,249
            Genes (coding)                    :: 2,188
            CDSs (with protein)               :: 2,188
            Genes (RNA)                       :: 69
            rRNAs                             :: 7, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 4 (16S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 14 of 61
            Pseudo Genes (incomplete)         :: 44 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 6 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284377
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 2004"
                     /isolation_source="Herd 119"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-05-18"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAH01000001-PZAH01000194
WGS_SCAFLD  NZ_PZAH01000001-NZ_PZAH01000194
//
LOCUS       NZ_JAWCVT010000000   2415082 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus hyicus strain X5069, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAWCVT000000000
VERSION     NZ_JAWCVT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37641189
            Assembly: GCF_038377805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus hyicus
  ORGANISM  Staphylococcus hyicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2415082)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Genomic analysis of multi-drug resistant coagulase-negative
            staphylococci from healthy humans and animals revealed mobilomes of
            unusual mechanisms and CRISPR-Cas system
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2415082)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2023) Agricultura y Alimentacion, Universidad de
            La Rioja, Calle Madre de Dios 53, Logrono 26004, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWCVT000000000.1.
            The Staphylococcus hyicus whole genome shotgun (WGS) project has
            the project accession NZ_JAWCVT000000000.  This version of the
            project (01) has the accession number NZ_JAWCVT010000000, and
            consists of sequences JAWCVT010000001-JAWCVT010000035.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Unknown
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038377805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:48:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,389
            CDSs (total)                      :: 2,321
            Genes (coding)                    :: 2,289
            CDSs (with protein)               :: 2,289
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 2 (16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 13 of 32
            Pseudo Genes (incomplete)         :: 21 of 32
            Pseudo Genes (internal stop)      :: 4 of 32
            Pseudo Genes (multiple problems)  :: 5 of 32
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415082
                     /organism="Staphylococcus hyicus"
                     /mol_type="genomic DNA"
                     /strain="X5069"
                     /isolation_source="nasal"
                     /host="pig"
                     /db_xref="taxon:1284"
                     /geo_loc_name="Spain"
                     /collection_date="2022-04-25"
WGS         JAWCVT010000001-JAWCVT010000035
WGS_SCAFLD  NZ_JAWCVT010000001-NZ_JAWCVT010000035
//
LOCUS       NZ_PZAQ01000000      2321532 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 1351, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZAQ00000000
VERSION     NZ_PZAQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172907
            Assembly: GCF_003040235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2321532)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321532)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZAQ00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZAQ00000000.  This version of the
            project (01) has the accession number NZ_PZAQ01000000, and consists
            of sequences PZAQ01000001-PZAQ01000046.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:06:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,350
            CDSs (total)                      :: 2,267
            Genes (coding)                    :: 2,212
            CDSs (with protein)               :: 2,212
            Genes (RNA)                       :: 83
            rRNAs                             :: 7, 10, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 9 (16S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 14 of 55
            Pseudo Genes (incomplete)         :: 40 of 55
            Pseudo Genes (internal stop)      :: 10 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321532
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 1351"
                     /isolation_source="Herd 208"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-07-04"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZAQ01000001-PZAQ01000046
WGS_SCAFLD  NZ_PZAQ01000001-NZ_PZAQ01000046
//
LOCUS       NZ_PZBW01000000      2286892 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 803, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZBW00000000
VERSION     NZ_PZBW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172890
            Assembly: GCF_003040355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2286892)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286892)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZBW00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZBW00000000.  This version of the
            project (01) has the accession number NZ_PZBW01000000, and consists
            of sequences PZBW01000001-PZBW01000109.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 55x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003040355.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:04:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,290
            CDSs (total)                      :: 2,212
            Genes (coding)                    :: 2,159
            CDSs (with protein)               :: 2,159
            Genes (RNA)                       :: 78
            rRNAs                             :: 6, 9, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8 (16S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 14 of 53
            Pseudo Genes (incomplete)         :: 39 of 53
            Pseudo Genes (internal stop)      :: 7 of 53
            Pseudo Genes (multiple problems)  :: 6 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286892
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 803"
                     /isolation_source="Herd 205"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-06-27"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZBW01000001-PZBW01000109
WGS_SCAFLD  NZ_PZBW01000001-NZ_PZBW01000109
//
LOCUS       NZ_PZCQ01000000      2352853 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 24, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCQ00000000
VERSION     NZ_PZCQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172867
            Assembly: GCF_003039835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2352853)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2352853)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCQ00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCQ00000000.  This version of the
            project (01) has the accession number NZ_PZCQ01000000, and consists
            of sequences PZCQ01000001-PZCQ01000177.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 35x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:59:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,399
            CDSs (total)                      :: 2,335
            Genes (coding)                    :: 2,266
            CDSs (with protein)               :: 2,266
            Genes (RNA)                       :: 64
            rRNAs                             :: 5, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 11 of 69
            Pseudo Genes (incomplete)         :: 56 of 69
            Pseudo Genes (internal stop)      :: 7 of 69
            Pseudo Genes (multiple problems)  :: 5 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2352853
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 24"
                     /isolation_source="Herd 103"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-03-30"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCQ01000001-PZCQ01000177
WGS_SCAFLD  NZ_PZCQ01000001-NZ_PZCQ01000177
//
LOCUS       NZ_JAWCVS010000000   2586743 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pasteuri strain X4956, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWCVS000000000
VERSION     NZ_JAWCVS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37641188
            Assembly: GCF_038377865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pasteuri
  ORGANISM  Staphylococcus pasteuri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2586743)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Genomic analysis of multi-drug resistant coagulase-negative
            staphylococci from healthy humans and animals revealed mobilomes of
            unusual mechanisms and CRISPR-Cas system
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2586743)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2023) Agricultura y Alimentacion, Universidad de
            La Rioja, Calle Madre de Dios 53, Logrono 26004, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWCVS000000000.1.
            The Staphylococcus pasteuri whole genome shotgun (WGS) project has
            the project accession NZ_JAWCVS000000000.  This version of the
            project (01) has the accession number NZ_JAWCVS010000000, and
            consists of sequences JAWCVS010000001-JAWCVS010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Unknown
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038377865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:50:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,577
            CDSs (total)                      :: 2,507
            Genes (coding)                    :: 2,451
            CDSs (with protein)               :: 2,451
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 17 of 56
            Pseudo Genes (incomplete)         :: 31 of 56
            Pseudo Genes (internal stop)      :: 13 of 56
            Pseudo Genes (multiple problems)  :: 5 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2586743
                     /organism="Staphylococcus pasteuri"
                     /mol_type="genomic DNA"
                     /strain="X4956"
                     /isolation_source="nasal"
                     /host="pig"
                     /db_xref="taxon:45972"
                     /geo_loc_name="Spain"
                     /collection_date="2022-07-24"
WGS         JAWCVS010000001-JAWCVS010000037
WGS_SCAFLD  NZ_JAWCVS010000001-NZ_JAWCVS010000037
//
LOCUS       NZ_PZBJ01000000      2345896 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 5978, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZBJ00000000
VERSION     NZ_PZBJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172943
            Assembly: GCF_003036085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2345896)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2345896)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZBJ00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZBJ00000000.  This version of the
            project (01) has the accession number NZ_PZBJ01000000, and consists
            of sequences PZBJ01000001-PZBJ01000149.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:03:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,398
            CDSs (total)                      :: 2,313
            Genes (coding)                    :: 2,237
            CDSs (with protein)               :: 2,237
            Genes (RNA)                       :: 85
            rRNAs                             :: 7, 9, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 8, 5 (16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 14 of 76
            Pseudo Genes (incomplete)         :: 65 of 76
            Pseudo Genes (internal stop)      :: 3 of 76
            Pseudo Genes (multiple problems)  :: 6 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345896
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 5978"
                     /isolation_source="Herd 407"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2008-02-26"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZBJ01000001-PZBJ01000149
WGS_SCAFLD  NZ_PZBJ01000001-NZ_PZBJ01000149
//
LOCUS       NZ_PZCI01000000      2341454 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 126, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZCI00000000
VERSION     NZ_PZCI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172875
            Assembly: GCF_003039735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2341454)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341454)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZCI00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PZCI00000000.  This version of the
            project (01) has the accession number NZ_PZCI01000000, and consists
            of sequences PZCI01000001-PZCI01000129.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 46x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003039735.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:04:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,369
            CDSs (total)                      :: 2,289
            Genes (coding)                    :: 2,227
            CDSs (with protein)               :: 2,227
            Genes (RNA)                       :: 80
            rRNAs                             :: 7, 9, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1 (5S, 23S)
            partial rRNAs                     :: 9 (16S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 16 of 62
            Pseudo Genes (incomplete)         :: 45 of 62
            Pseudo Genes (internal stop)      :: 5 of 62
            Pseudo Genes (multiple problems)  :: 4 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341454
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 126"
                     /isolation_source="Herd 103"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Alberta"
                     /collection_date="2007-06-02"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZCI01000001-PZCI01000129
WGS_SCAFLD  NZ_PZCI01000001-NZ_PZCI01000129
//
LOCUS       NZ_PYZT01000000      2327135 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus chromogenes strain SNUC 4619, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PYZT00000000
VERSION     NZ_PYZT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06172940
            Assembly: GCF_003036125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus chromogenes
  ORGANISM  Staphylococcus chromogenes
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2327135)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327135)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PYZT00000000.1.
            The Staphylococcus chromogenes whole genome shotgun (WGS) project
            has the project accession NZ_PYZT00000000.  This version of the
            project (01) has the accession number NZ_PYZT01000000, and consists
            of sequences PYZT01000001-PYZT01000131.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003036125.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:04:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,362
            CDSs (total)                      :: 2,283
            Genes (coding)                    :: 2,228
            CDSs (with protein)               :: 2,228
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 7, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6, 4 (16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 12 of 55
            Pseudo Genes (incomplete)         :: 45 of 55
            Pseudo Genes (internal stop)      :: 2 of 55
            Pseudo Genes (multiple problems)  :: 4 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327135
                     /organism="Staphylococcus chromogenes"
                     /mol_type="genomic DNA"
                     /strain="SNUC 4619"
                     /isolation_source="Herd 223"
                     /host="Bos taurus"
                     /db_xref="taxon:46126"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-12-28"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PYZT01000001-PYZT01000131
WGS_SCAFLD  NZ_PYZT01000001-NZ_PYZT01000131
//
LOCUS       NZ_JAFDQG010000000   2451488 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus capitis strain F6_7S_P_4, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFDQG000000000
VERSION     NZ_JAFDQG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17570252
            Assembly: GCF_017167155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus capitis
  ORGANISM  Staphylococcus capitis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2451488)
  AUTHORS   Venkateswaran,K.
  TITLE     Draft Genomes of Various Bacterial Phyla Isolated from the
            International Space Station
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2451488)
  AUTHORS   Venkateswaran,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2021) Biotechnology and Planetary Protection
            Group, Jet Propulsion Laboratory, California Institute of
            Technology, 4800 Oak Grove Dr., Pasadena, CA 91109, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFDQG000000000.1.
            The Staphylococcus capitis whole genome shotgun (WGS) project has
            the project accession NZ_JAFDQG000000000.  This version of the
            project (01) has the accession number NZ_JAFDQG010000000, and
            consists of sequences JAFDQG010000001-JAFDQG010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. v3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1422.618791913784x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017167155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:39:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,398
            CDSs (total)                      :: 2,345
            Genes (coding)                    :: 2,299
            CDSs (with protein)               :: 2,299
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 21 of 46
            Pseudo Genes (incomplete)         :: 27 of 46
            Pseudo Genes (internal stop)      :: 10 of 46
            Pseudo Genes (multiple problems)  :: 12 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2451488
                     /organism="Staphylococcus capitis"
                     /mol_type="genomic DNA"
                     /strain="F6_7S_P_4"
                     /isolation_source="International Space Station during
                     MT-2"
                     /db_xref="taxon:29388"
                     /geo_loc_name="USA: International Space Station"
                     /collection_date="2018-04-13"
WGS         JAFDQG010000001-JAFDQG010000016
WGS_SCAFLD  NZ_JAFDQG010000001-NZ_JAFDQG010000016
//
LOCUS       NZ_JAKVFD010000000   2494421 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain C91NS1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVFD000000000
VERSION     NZ_JAKVFD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185737
            Assembly: GCF_022485125.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2494421)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2494421)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVFD000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVFD000000000.  This version of the
            project (01) has the accession number NZ_JAKVFD010000000, and
            consists of sequences JAKVFD010000001-JAKVFD010000035.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485125.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:52:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,502
            CDSs (total)                      :: 2,452
            Genes (coding)                    :: 2,390
            CDSs (with protein)               :: 2,390
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 23 of 62
            Pseudo Genes (incomplete)         :: 40 of 62
            Pseudo Genes (internal stop)      :: 7 of 62
            Pseudo Genes (multiple problems)  :: 7 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494421
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="C91NS1"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVFD010000001-JAKVFD010000035
WGS_SCAFLD  NZ_JAKVFD010000001-NZ_JAKVFD010000035
//
LOCUS       NZ_JAKOPJ010000000   2706800 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus argenteus strain ABFQN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKOPJ000000000
VERSION     NZ_JAKOPJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17729821
            Assembly: GCF_022288745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus argenteus
  ORGANISM  Staphylococcus argenteus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2706800)
  AUTHORS   Conlan,S., Deming,C., Nisc Comparative Sequencing Program,N. and
            Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2706800)
  AUTHORS   Segre,J.A. and Mullikin,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKOPJ000000000.1.
            The Staphylococcus argenteus whole genome shotgun (WGS) project has
            the project accession NZ_JAKOPJ000000000.  This version of the
            project (01) has the accession number NZ_JAKOPJ010000000, and
            consists of sequences JAKOPJ010000001-JAKOPJ010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022288745.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:53:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,615
            CDSs (total)                      :: 2,548
            Genes (coding)                    :: 2,466
            CDSs (with protein)               :: 2,466
            Genes (RNA)                       :: 67
            rRNAs                             :: 3, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 43 of 82
            Pseudo Genes (incomplete)         :: 40 of 82
            Pseudo Genes (internal stop)      :: 16 of 82
            Pseudo Genes (multiple problems)  :: 14 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706800
                     /organism="Staphylococcus argenteus"
                     /mol_type="genomic DNA"
                     /strain="ABFQN"
                     /host="Homo sapiens"
                     /db_xref="taxon:985002"
                     /geo_loc_name="USA"
                     /lat_lon="38.999838 N 77.106017 W"
                     /collection_date="2014"
WGS         JAKOPJ010000001-JAKOPJ010000025
WGS_SCAFLD  NZ_JAKOPJ010000001-NZ_JAKOPJ010000025
//
LOCUS       NZ_JAKVFO010000000   2475637 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain C79NS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVFO000000000
VERSION     NZ_JAKVFO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185726
            Assembly: GCF_022485305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2475637)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2475637)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVFO000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVFO000000000.  This version of the
            project (01) has the accession number NZ_JAKVFO010000000, and
            consists of sequences JAKVFO010000001-JAKVFO010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:55:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,473
            CDSs (total)                      :: 2,424
            Genes (coding)                    :: 2,364
            CDSs (with protein)               :: 2,364
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 20 of 60
            Pseudo Genes (incomplete)         :: 36 of 60
            Pseudo Genes (internal stop)      :: 16 of 60
            Pseudo Genes (multiple problems)  :: 11 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2475637
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="C79NS2"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVFO010000001-JAKVFO010000073
WGS_SCAFLD  NZ_JAKVFO010000001-NZ_JAKVFO010000073
//
LOCUS       NZ_JAKVFH010000000   2421040 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain C84FS2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVFH000000000
VERSION     NZ_JAKVFH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185733
            Assembly: GCF_022485685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2421040)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2421040)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVFH000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVFH000000000.  This version of the
            project (01) has the accession number NZ_JAKVFH010000000, and
            consists of sequences JAKVFH010000001-JAKVFH010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:57:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,429
            CDSs (total)                      :: 2,375
            Genes (coding)                    :: 2,314
            CDSs (with protein)               :: 2,314
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 19 of 61
            Pseudo Genes (incomplete)         :: 35 of 61
            Pseudo Genes (internal stop)      :: 17 of 61
            Pseudo Genes (multiple problems)  :: 10 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2421040
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="C84FS2"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVFH010000001-JAKVFH010000046
WGS_SCAFLD  NZ_JAKVFH010000001-NZ_JAKVFH010000046
//
LOCUS       NZ_JAKVEU010000000   2568834 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus haemolyticus strain 051P3BA2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKVEU000000000
VERSION     NZ_JAKVEU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26185746
            Assembly: GCF_022485045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus haemolyticus
  ORGANISM  Staphylococcus haemolyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2568834)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Genomic diversity of Staphylococcus haemolyticus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2568834)
  AUTHORS   Yang,Y. and Tian,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2022) Zhongshan School of Medicine, Sun-yat Sen
            University, 74 Zhongshan 2nd Road, Guangzhou, Guangdong 510080,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKVEU000000000.1.
            The Staphylococcus haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAKVEU000000000.  This version of the
            project (01) has the accession number NZ_JAKVEU010000000, and
            consists of sequences JAKVEU010000001-JAKVEU010000090.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022485045.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:59:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,604
            CDSs (total)                      :: 2,556
            Genes (coding)                    :: 2,494
            CDSs (with protein)               :: 2,494
            Genes (RNA)                       :: 48
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 23 of 62
            Pseudo Genes (incomplete)         :: 31 of 62
            Pseudo Genes (internal stop)      :: 10 of 62
            Pseudo Genes (multiple problems)  :: 2 of 62
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568834
                     /organism="Staphylococcus haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="051P3BA2"
                     /db_xref="taxon:1283"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAKVEU010000001-JAKVEU010000090
WGS_SCAFLD  NZ_JAKVEU010000001-NZ_JAKVEU010000090
//
LOCUS       NZ_JAKTND010000000   2552902 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus capitis strain LR96, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKTND000000000
VERSION     NZ_JAKTND000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26145086
            Assembly: GCF_022762885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus capitis
  ORGANISM  Staphylococcus capitis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2552902)
  AUTHORS   Shen,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2022) Clinical Microbiology Laboratory, The
            Second Affiliated Hospital of Zhejiang University School of
            Medicine, Zhejiang University, 88 Jiefang Road, Hangzhou 310009,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKTND000000000.1.
            The Staphylococcus capitis whole genome shotgun (WGS) project has
            the project accession NZ_JAKTND000000000.  This version of the
            project (01) has the accession number NZ_JAKTND010000000, and
            consists of sequences JAKTND010000001-JAKTND010000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 200x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022762885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:23:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,532
            CDSs (total)                      :: 2,466
            Genes (coding)                    :: 2,420
            CDSs (with protein)               :: 2,420
            Genes (RNA)                       :: 66
            rRNAs                             :: 3, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 3, 2 (5S, 16S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 13 of 46
            Pseudo Genes (incomplete)         :: 32 of 46
            Pseudo Genes (internal stop)      :: 8 of 46
            Pseudo Genes (multiple problems)  :: 7 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552902
                     /organism="Staphylococcus capitis"
                     /mol_type="genomic DNA"
                     /strain="LR96"
                     /host="Homo sapiens"
                     /db_xref="taxon:29388"
                     /geo_loc_name="China"
                     /collection_date="2020-11"
WGS         JAKTND010000001-JAKTND010000043
WGS_SCAFLD  NZ_JAKTND010000001-NZ_JAKTND010000043
//
LOCUS       NZ_CDWAPQ010000000   3825301 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Sphingomonas paucimobilis isolate MarMAG_127514, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDWAPQ000000000
VERSION     NZ_CDWAPQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747933
            Assembly: GCF_977813215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Sphingomonas paucimobilis (marine metagenome)
  ORGANISM  Sphingomonas paucimobilis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingomonadaceae; Sphingomonas.
REFERENCE   1  (bases 1 to 3825301)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDWAPQ000000000.1.
            The Sphingomonas paucimobilis whole genome shotgun (WGS) project
            has the project accession NZ_CDWAPQ000000000.  This version of the
            project (01) has the accession number NZ_CDWAPQ010000000, and
            consists of sequences CDWAPQ010000001-CDWAPQ010000326.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977813215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:24:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,890
            CDSs (total)                      :: 3,849
            Genes (coding)                    :: 3,734
            CDSs (with protein)               :: 3,734
            Genes (RNA)                       :: 41
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 19 of 115
            Pseudo Genes (incomplete)         :: 102 of 115
            Pseudo Genes (internal stop)      :: 5 of 115
            Pseudo Genes (multiple problems)  :: 9 of 115
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825301
                     /organism="Sphingomonas paucimobilis"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_127514"
                     /isolation_source="subsurface seawater from pelagic zone"
                     /db_xref="taxon:13689"
                     /environmental_sample
                     /geo_loc_name="Atlantic Ocean"
                     /collection_date="2016-05-12"
                     /metagenome_source="marine metagenome"
                     /metagenomic
WGS         CDWAPQ010000001-CDWAPQ010000326
WGS_SCAFLD  NZ_CDWAPQ010000001-NZ_CDWAPQ010000326
//
LOCUS       NZ_CBCDLQ010000000   2088418 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Sphingorhabdus sp. isolate
            PELAGICS-MAG-m2-bin118268-RIMVE-SM-19jul21., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCDLQ000000000
VERSION     NZ_CBCDLQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460578
            Assembly: GCF_965035715.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Sphingorhabdus sp. (freshwater metagenome)
  ORGANISM  Sphingorhabdus sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Sphingomonadales; Sphingorhabdaceae; Sphingorhabdus.
REFERENCE   1  (bases 1 to 2088418)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCDLQ000000000.1.
            The Sphingorhabdus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCDLQ000000000.  This version of the project
            (01) has the accession number NZ_CBCDLQ010000000, and consists of
            sequences CBCDLQ010000001-CBCDLQ010000034.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965035715.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:30:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,029
            CDSs (total)                      :: 1,978
            Genes (coding)                    :: 1,960
            CDSs (with protein)               :: 1,960
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 1 of 18
            Pseudo Genes (incomplete)         :: 15 of 18
            Pseudo Genes (internal stop)      :: 2 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088418
                     /organism="Sphingorhabdus sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin118268-RIMVE-SM-19jul21."
                     /isolation_source="Rimov reservoir"
                     /db_xref="taxon:1902408"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2021-07-19"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCDLQ010000001-CBCDLQ010000034
WGS_SCAFLD  NZ_CBCDLQ010000001-NZ_CBCDLQ010000034
//
LOCUS       NZ_JAWCVR010000000   2606359 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus arlettae strain X4592, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAWCVR000000000
VERSION     NZ_JAWCVR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37641187
            Assembly: GCF_038377845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus arlettae
  ORGANISM  Staphylococcus arlettae
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2606359)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Genomic analysis of multi-drug resistant coagulase-negative
            staphylococci from healthy humans and animals revealed mobilomes of
            unusual mechanisms and CRISPR-Cas system
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2606359)
  AUTHORS   Abdullahi,I., Lozano,C., Zarazaga,M., Latorre,J., Stegger,M. and
            Torres,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2023) Agricultura y Alimentacion, Universidad de
            La Rioja, Calle Madre de Dios 53, Logrono 26004, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAWCVR000000000.1.
            The Staphylococcus arlettae whole genome shotgun (WGS) project has
            the project accession NZ_JAWCVR000000000.  This version of the
            project (01) has the accession number NZ_JAWCVR010000000, and
            consists of sequences JAWCVR010000001-JAWCVR010000060.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Unknown
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038377845.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:50:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,575
            CDSs (total)                      :: 2,510
            Genes (coding)                    :: 2,485
            CDSs (with protein)               :: 2,485
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 9 of 25
            Pseudo Genes (incomplete)         :: 16 of 25
            Pseudo Genes (internal stop)      :: 7 of 25
            Pseudo Genes (multiple problems)  :: 5 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606359
                     /organism="Staphylococcus arlettae"
                     /mol_type="genomic DNA"
                     /strain="X4592"
                     /isolation_source="nasal"
                     /host="nestling stork"
                     /db_xref="taxon:29378"
                     /geo_loc_name="Spain"
                     /collection_date="2021-04-20"
WGS         JAWCVR010000001-JAWCVR010000060
WGS_SCAFLD  NZ_JAWCVR010000001-NZ_JAWCVR010000060
//
LOCUS       NZ_JUNW01000000      1884524 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus oralis strain 918_SORA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUNW00000000
VERSION     NZ_JUNW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03198130
            Assembly: GCF_001075675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus oralis
  ORGANISM  Streptococcus oralis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1884524)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884524)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUNW00000000.1.
            The Streptococcus oralis whole genome shotgun (WGS) project has the
            project accession NZ_JUNW00000000.  This version of the project
            (01) has the accession number NZ_JUNW01000000, and consists of
            sequences JUNW01000001-JUNW01000060.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 36x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001075675.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,838
            CDSs (total)                      :: 1,804
            Genes (coding)                    :: 1,763
            CDSs (with protein)               :: 1,763
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 28
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 7 of 41
            Pseudo Genes (incomplete)         :: 31 of 41
            Pseudo Genes (internal stop)      :: 10 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884524
                     /organism="Streptococcus oralis"
                     /mol_type="genomic DNA"
                     /strain="918_SORA"
                     /host="Homo sapiens"
                     /db_xref="taxon:1303"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUNW01000001-JUNW01000060
WGS_SCAFLD  NZ_JUNW01000001-NZ_JUNW01000060
//
LOCUS       NZ_LJHK01000000      2263302 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pseudopneumoniae strain 61-14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LJHK00000000
VERSION     NZ_LJHK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04031595
            Assembly: GCF_001304565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pseudopneumoniae
  ORGANISM  Streptococcus pseudopneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2263302)
  AUTHORS   Fuursted,K., Littauer,P.J., Greve,T. and Scholz,C.F.
  TITLE     Septicemia with Streptococcus pseudopneumoniae: report of three
            cases with an apparent hepatic or bile duct association
  JOURNAL   Infect Dis (Lond) 48 (8), 636-639 (2016)
   PUBMED   27100044
REFERENCE   2  (bases 1 to 2263302)
  AUTHORS   Fuursted,K., Littauer,P.J., Greve,T. and Scholz,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-SEP-2015) Microbiology & Infection Control, Statens
            Serum Institut, Artillerivej 5, Copenhagen 2300, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LJHK00000000.1.
            The Streptococcus pseudopneumoniae whole genome shotgun (WGS)
            project has the project accession NZ_LJHK00000000.  This version of
            the project (01) has the accession number NZ_LJHK01000000, and
            consists of sequences LJHK01000001-LJHK01000188.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC Genomic Workbench v. 7.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001304565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:32:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,431
            CDSs (total)                      :: 2,380
            Genes (coding)                    :: 2,150
            CDSs (with protein)               :: 2,150
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 230
            CDSs (without protein)            :: 230
            Pseudo Genes (ambiguous residues) :: 0 of 230
            Pseudo Genes (frameshifted)       :: 90 of 230
            Pseudo Genes (incomplete)         :: 154 of 230
            Pseudo Genes (internal stop)      :: 48 of 230
            Pseudo Genes (multiple problems)  :: 53 of 230
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263302
                     /organism="Streptococcus pseudopneumoniae"
                     /mol_type="genomic DNA"
                     /strain="61-14"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:257758"
                     /geo_loc_name="Denmark"
                     /lat_lon="55.66 N 12.59 E"
                     /collection_date="2014"
                     /collected_by="SSI"
WGS         LJHK01000001-LJHK01000188
WGS_SCAFLD  NZ_LJHK01000001-NZ_LJHK01000188
//
LOCUS       NZ_JUWC01000000      2336029 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus sanguinis strain 711_SSAN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUWC00000000
VERSION     NZ_JUWC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197916
            Assembly: GCF_001074035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus sanguinis
  ORGANISM  Streptococcus sanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2336029)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2336029)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUWC00000000.1.
            The Streptococcus sanguinis whole genome shotgun (WGS) project has
            the project accession NZ_JUWC00000000.  This version of the project
            (01) has the accession number NZ_JUWC01000000, and consists of
            sequences JUWC01000001-JUWC01000061.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 37x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001074035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,295
            CDSs (total)                      :: 2,262
            Genes (coding)                    :: 2,208
            CDSs (with protein)               :: 2,208
            Genes (RNA)                       :: 33
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 13 of 54
            Pseudo Genes (incomplete)         :: 35 of 54
            Pseudo Genes (internal stop)      :: 15 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2336029
                     /organism="Streptococcus sanguinis"
                     /mol_type="genomic DNA"
                     /strain="711_SSAN"
                     /host="Homo sapiens"
                     /db_xref="taxon:1305"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUWC01000001-JUWC01000061
WGS_SCAFLD  NZ_JUWC01000001-NZ_JUWC01000061
//
LOCUS       NZ_JWGO01000000      2026153 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain 1006_SMUT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWGO00000000
VERSION     NZ_JWGO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03196968
            Assembly: GCF_001068415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2026153)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026153)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWGO00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_JWGO00000000.  This version of the project
            (01) has the accession number NZ_JWGO01000000, and consists of
            sequences JWGO01000001-JWGO01000062.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 50x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001068415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:29:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,008
            CDSs (total)                      :: 1,967
            Genes (coding)                    :: 1,889
            CDSs (with protein)               :: 1,889
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 34
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 78
            CDSs (without protein)            :: 78
            Pseudo Genes (ambiguous residues) :: 0 of 78
            Pseudo Genes (frameshifted)       :: 42 of 78
            Pseudo Genes (incomplete)         :: 43 of 78
            Pseudo Genes (internal stop)      :: 21 of 78
            Pseudo Genes (multiple problems)  :: 20 of 78
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026153
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="1006_SMUT"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JWGO01000001-JWGO01000062
WGS_SCAFLD  NZ_JWGO01000001-NZ_JWGO01000062
//
LOCUS       NZ_JVPQ01000000      2357426 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus sanguinis strain 216_SSAN, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVPQ00000000
VERSION     NZ_JVPQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197408
            Assembly: GCF_001071805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus sanguinis
  ORGANISM  Streptococcus sanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2357426)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357426)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVPQ00000000.1.
            The Streptococcus sanguinis whole genome shotgun (WGS) project has
            the project accession NZ_JVPQ00000000.  This version of the project
            (01) has the accession number NZ_JVPQ01000000, and consists of
            sequences JVPQ01000001-JVPQ01000068.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 62x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001071805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,341
            CDSs (total)                      :: 2,308
            Genes (coding)                    :: 2,234
            CDSs (with protein)               :: 2,234
            Genes (RNA)                       :: 33
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 19 of 74
            Pseudo Genes (incomplete)         :: 52 of 74
            Pseudo Genes (internal stop)      :: 9 of 74
            Pseudo Genes (multiple problems)  :: 6 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357426
                     /organism="Streptococcus sanguinis"
                     /mol_type="genomic DNA"
                     /strain="216_SSAN"
                     /host="Homo sapiens"
                     /db_xref="taxon:1305"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVPQ01000001-JVPQ01000068
WGS_SCAFLD  NZ_JVPQ01000001-NZ_JVPQ01000068
//
LOCUS       NZ_JVCZ01000000      2276701 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain 540.rep1_SPAR, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JVCZ00000000
VERSION     NZ_JVCZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197737
            Assembly: GCF_001071295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2276701)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276701)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVCZ00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_JVCZ00000000.  This version of the
            project (01) has the accession number NZ_JVCZ01000000, and consists
            of sequences JVCZ01000001-JVCZ01000041.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 13x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001071295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,253
            CDSs (total)                      :: 2,190
            Genes (coding)                    :: 2,141
            CDSs (with protein)               :: 2,141
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 8, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2 (5S, 23S)
            partial rRNAs                     :: 8 (16S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 15 of 49
            Pseudo Genes (incomplete)         :: 34 of 49
            Pseudo Genes (internal stop)      :: 4 of 49
            Pseudo Genes (multiple problems)  :: 4 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276701
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="540.rep1_SPAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVCZ01000001-JVCZ01000041
WGS_SCAFLD  NZ_JVCZ01000001-NZ_JVCZ01000041
//
LOCUS       NZ_JUVM01000000      2043176 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus oralis strain 727_SORA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUVM00000000
VERSION     NZ_JUVM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197932
            Assembly: GCF_001074055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus oralis
  ORGANISM  Streptococcus oralis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2043176)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043176)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUVM00000000.1.
            The Streptococcus oralis whole genome shotgun (WGS) project has the
            project accession NZ_JUVM00000000.  This version of the project
            (01) has the accession number NZ_JUVM01000000, and consists of
            sequences JUVM01000001-JUVM01000149.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 30x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001074055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,065
            CDSs (total)                      :: 2,032
            Genes (coding)                    :: 1,966
            CDSs (with protein)               :: 1,966
            Genes (RNA)                       :: 33
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 66
            CDSs (without protein)            :: 66
            Pseudo Genes (ambiguous residues) :: 0 of 66
            Pseudo Genes (frameshifted)       :: 13 of 66
            Pseudo Genes (incomplete)         :: 56 of 66
            Pseudo Genes (internal stop)      :: 11 of 66
            Pseudo Genes (multiple problems)  :: 9 of 66
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043176
                     /organism="Streptococcus oralis"
                     /mol_type="genomic DNA"
                     /strain="727_SORA"
                     /host="Homo sapiens"
                     /db_xref="taxon:1303"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUVM01000001-JUVM01000149
WGS_SCAFLD  NZ_JUVM01000001-NZ_JUVM01000149
//
LOCUS       NZ_JVSS01000000      2274370 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain 139.rep1_SPAR, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JVSS00000000
VERSION     NZ_JVSS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197328
            Assembly: GCF_001070575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2274370)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2274370)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVSS00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_JVSS00000000.  This version of the
            project (01) has the accession number NZ_JVSS01000000, and consists
            of sequences JVSS01000001-JVSS01000099.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 45x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001070575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,242
            CDSs (total)                      :: 2,194
            Genes (coding)                    :: 2,153
            CDSs (with protein)               :: 2,153
            Genes (RNA)                       :: 48
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 6 of 41
            Pseudo Genes (incomplete)         :: 32 of 41
            Pseudo Genes (internal stop)      :: 4 of 41
            Pseudo Genes (multiple problems)  :: 1 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2274370
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="139.rep1_SPAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVSS01000001-JVSS01000099
WGS_SCAFLD  NZ_JVSS01000001-NZ_JVSS01000099
//
LOCUS       NZ_RAHZ01000000      2240983 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pseudopneumoniae strain Spain2270, whole genome
            shotgun sequencing project.
ACCESSION   NZ_RAHZ00000000
VERSION     NZ_RAHZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10131018
            Assembly: GCF_003605455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pseudopneumoniae
  ORGANISM  Streptococcus pseudopneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2240983)
  AUTHORS   Handem,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2018) Microbiology, ITQB NOVA, Avenida da
            Republica, Oeiras 2780-157, Portugal
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RAHZ00000000.1.
            The Streptococcus pseudopneumoniae whole genome shotgun (WGS)
            project has the project accession NZ_RAHZ00000000.  This version of
            the project (01) has the accession number NZ_RAHZ01000000, and
            consists of sequences RAHZ01000001-RAHZ01000150.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. MARCH-2018
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003605455.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:16:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,408
            CDSs (total)                      :: 2,350
            Genes (coding)                    :: 2,143
            CDSs (with protein)               :: 2,143
            Genes (RNA)                       :: 58
            rRNAs                             :: 3, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 207
            CDSs (without protein)            :: 207
            Pseudo Genes (ambiguous residues) :: 0 of 207
            Pseudo Genes (frameshifted)       :: 83 of 207
            Pseudo Genes (incomplete)         :: 130 of 207
            Pseudo Genes (internal stop)      :: 50 of 207
            Pseudo Genes (multiple problems)  :: 45 of 207
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240983
                     /organism="Streptococcus pseudopneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Spain2270"
                     /host="Homo sapiens"
                     /db_xref="taxon:257758"
                     /geo_loc_name="Spain"
                     /collection_date="2004"
WGS         RAHZ01000001-RAHZ01000150
WGS_SCAFLD  NZ_RAHZ01000001-NZ_RAHZ01000150
//
LOCUS       NZ_JWDR01000000      1812267 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus anginosus strain 1080_SANG, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWDR00000000
VERSION     NZ_JWDR00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197043
            Assembly: GCF_001070115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus anginosus
  ORGANISM  Streptococcus anginosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus anginosus group.
REFERENCE   1  (bases 1 to 1812267)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812267)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWDR00000000.1.
            The Streptococcus anginosus whole genome shotgun (WGS) project has
            the project accession NZ_JWDR00000000.  This version of the project
            (01) has the accession number NZ_JWDR01000000, and consists of
            sequences JWDR01000001-JWDR01000032.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 10x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001070115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:32:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,779
            CDSs (total)                      :: 1,734
            Genes (coding)                    :: 1,661
            CDSs (with protein)               :: 1,661
            Genes (RNA)                       :: 45
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 30
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 36 of 73
            Pseudo Genes (incomplete)         :: 28 of 73
            Pseudo Genes (internal stop)      :: 26 of 73
            Pseudo Genes (multiple problems)  :: 15 of 73
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812267
                     /organism="Streptococcus anginosus"
                     /mol_type="genomic DNA"
                     /strain="1080_SANG"
                     /host="Homo sapiens"
                     /db_xref="taxon:1328"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JWDR01000001-JWDR01000032
WGS_SCAFLD  NZ_JWDR01000001-NZ_JWDR01000032
//
LOCUS       NZ_JVKT01000000      2276255 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain 344_SPAR, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVKT00000000
VERSION     NZ_JVKT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197535
            Assembly: GCF_001070915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2276255)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276255)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVKT00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_JVKT00000000.  This version of the
            project (01) has the accession number NZ_JVKT01000000, and consists
            of sequences JVKT01000001-JVKT01000084.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 11x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001070915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:35:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,193
            CDSs (total)                      :: 2,139
            Genes (coding)                    :: 2,082
            CDSs (with protein)               :: 2,082
            Genes (RNA)                       :: 54
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 19 of 57
            Pseudo Genes (incomplete)         :: 38 of 57
            Pseudo Genes (internal stop)      :: 13 of 57
            Pseudo Genes (multiple problems)  :: 12 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276255
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="344_SPAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVKT01000001-JVKT01000084
WGS_SCAFLD  NZ_JVKT01000001-NZ_JVKT01000084
//
LOCUS       NZ_JACSYP010000000   2239036 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pseudopneumoniae strain A19020046, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JACSYP000000000
VERSION     NZ_JACSYP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15921671
            Assembly: GCF_015700055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pseudopneumoniae
  ORGANISM  Streptococcus pseudopneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2239036)
  AUTHORS   Jensen,C.S., Iversen,K.H., Dargis,R., Shewmaker,P., Rasmussen,S.,
            Christensen,J.J. and Nielsen,X.C.
  TITLE     Streptococcus pseudopneumoniae: Use of Whole-Genome Sequences To
            Validate Species Identification Methods
  JOURNAL   J Clin Microbiol 59 (2), e02503-20 (2021)
   PUBMED   33208473
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239036)
  AUTHORS   Jensen,C.S., Iversen,K.I., Dargis,R., Shewmaker,P., Rasmussen,S.,
            Christensen,J.J. and Nielsen,X.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2020) Dept. of Clinical Microbiology, Region
            Zealand, Ingemannsvej 46, Slagelse 4200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACSYP000000000.1.
            The Streptococcus pseudopneumoniae whole genome shotgun (WGS)
            project has the project accession NZ_JACSYP000000000.  This version
            of the project (01) has the accession number NZ_JACSYP010000000,
            and consists of sequences JACSYP010000001-JACSYP010000240.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 93x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015700055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,442
            CDSs (total)                      :: 2,395
            Genes (coding)                    :: 2,170
            CDSs (with protein)               :: 2,170
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 225
            CDSs (without protein)            :: 225
            Pseudo Genes (ambiguous residues) :: 0 of 225
            Pseudo Genes (frameshifted)       :: 81 of 225
            Pseudo Genes (incomplete)         :: 155 of 225
            Pseudo Genes (internal stop)      :: 51 of 225
            Pseudo Genes (multiple problems)  :: 51 of 225
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239036
                     /organism="Streptococcus pseudopneumoniae"
                     /mol_type="genomic DNA"
                     /strain="A19020046"
                     /isolation_source="Lower respiratory tract"
                     /host="Homo sapiens"
                     /db_xref="taxon:257758"
                     /geo_loc_name="Denmark: Slagelse"
                     /lat_lon="55.24 N 11.21 E"
                     /collection_date="2019"
                     /collected_by="The Regional Department of Clinical
                     Microbiology, Region Zealand, Slagelse, Denmark"
WGS         JACSYP010000001-JACSYP010000240
WGS_SCAFLD  NZ_JACSYP010000001-NZ_JACSYP010000240
//
LOCUS       NZ_JVLU01000000      2091732 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain 318_SPAR, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JVLU00000000
VERSION     NZ_JVLU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197508
            Assembly: GCF_001072295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2091732)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091732)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVLU00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_JVLU00000000.  This version of the
            project (01) has the accession number NZ_JVLU01000000, and consists
            of sequences JVLU01000001-JVLU01000109.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 12x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001072295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:33:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,038
            CDSs (total)                      :: 1,989
            Genes (coding)                    :: 1,959
            CDSs (with protein)               :: 1,959
            Genes (RNA)                       :: 49
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 30
            CDSs (without protein)            :: 30
            Pseudo Genes (ambiguous residues) :: 0 of 30
            Pseudo Genes (frameshifted)       :: 2 of 30
            Pseudo Genes (incomplete)         :: 25 of 30
            Pseudo Genes (internal stop)      :: 5 of 30
            Pseudo Genes (multiple problems)  :: 2 of 30
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091732
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="318_SPAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVLU01000001-JVLU01000109
WGS_SCAFLD  NZ_JVLU01000001-NZ_JVLU01000109
//
LOCUS       NZ_JACSZB010000000   2294182 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pseudopneumoniae strain 266-03, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACSZB000000000
VERSION     NZ_JACSZB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15921659
            Assembly: GCF_015700305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pseudopneumoniae
  ORGANISM  Streptococcus pseudopneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2294182)
  AUTHORS   Jensen,C.S., Iversen,K.H., Dargis,R., Shewmaker,P., Rasmussen,S.,
            Christensen,J.J. and Nielsen,X.C.
  TITLE     Streptococcus pseudopneumoniae: Use of Whole-Genome Sequences To
            Validate Species Identification Methods
  JOURNAL   J Clin Microbiol 59 (2), e02503-20 (2021)
   PUBMED   33208473
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294182)
  AUTHORS   Jensen,C.S., Iversen,K.I., Dargis,R., Shewmaker,P., Rasmussen,S.,
            Christensen,J.J. and Nielsen,X.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2020) Dept. of Clinical Microbiology, Region
            Zealand, Ingemannsvej 46, Slagelse 4200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACSZB000000000.1.
            The Streptococcus pseudopneumoniae whole genome shotgun (WGS)
            project has the project accession NZ_JACSZB000000000.  This version
            of the project (01) has the accession number NZ_JACSZB010000000,
            and consists of sequences JACSZB010000001-JACSZB010000280.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 98x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015700305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:25:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,480
            CDSs (total)                      :: 2,433
            Genes (coding)                    :: 2,208
            CDSs (with protein)               :: 2,208
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 225
            CDSs (without protein)            :: 225
            Pseudo Genes (ambiguous residues) :: 0 of 225
            Pseudo Genes (frameshifted)       :: 88 of 225
            Pseudo Genes (incomplete)         :: 155 of 225
            Pseudo Genes (internal stop)      :: 40 of 225
            Pseudo Genes (multiple problems)  :: 50 of 225
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294182
                     /organism="Streptococcus pseudopneumoniae"
                     /mol_type="genomic DNA"
                     /strain="266-03"
                     /isolation_source="Lower respiratory tract"
                     /host="Homo sapiens"
                     /db_xref="taxon:257758"
                     /geo_loc_name="Canada: Halifax"
                     /lat_lon="44.38 N 63.35 W"
                     /collection_date="2000-11-01/2002-11-01"
                     /collected_by="Center for Disease Control and Prevention,
                     Atlanta, Georgia, USA"
WGS         JACSZB010000001-JACSZB010000280
WGS_SCAFLD  NZ_JACSZB010000001-NZ_JACSZB010000280
//
LOCUS       NZ_CBAGKP010000000   7333321 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Spirosoma sp. isolate
            PELAGICS-MAG-vn-bin040348-SANAM-SM-14apr22., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBAGKP000000000
VERSION     NZ_CBAGKP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117457678
            Assembly: GCF_964704215.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Spirosoma sp. (freshwater metagenome)
  ORGANISM  Spirosoma sp.
            Bacteria; Pseudomonadati; Bacteroidota; Cytophagia; Cytophagales;
            Cytophagaceae; Spirosoma.
REFERENCE   1  (bases 1 to 7333321)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBAGKP000000000.1.
            The Spirosoma sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBAGKP000000000.  This version of the project
            (01) has the accession number NZ_CBAGKP010000000, and consists of
            sequences CBAGKP010000001-CBAGKP010000110.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964704215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:50:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,111
            CDSs (total)                      :: 6,059
            Genes (coding)                    :: 6,014
            CDSs (with protein)               :: 6,014
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 46
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 6 of 45
            Pseudo Genes (incomplete)         :: 33 of 45
            Pseudo Genes (internal stop)      :: 9 of 45
            Pseudo Genes (multiple problems)  :: 3 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7333321
                     /organism="Spirosoma sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-vn-bin040348-SANAM-SM-14apr22."
                     /isolation_source="Sfanta Ana lake"
                     /db_xref="taxon:1899569"
                     /environmental_sample
                     /geo_loc_name="Romania"
                     /collection_date="2022-04-14"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBAGKP010000001-CBAGKP010000110
WGS_SCAFLD  NZ_CBAGKP010000001-NZ_CBAGKP010000110
//
LOCUS       NZ_JACSUI010000000   1869650 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus thermophilus strain 24854, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACSUI000000000
VERSION     NZ_JACSUI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15923551
            Assembly: GCF_017367065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus thermophilus
  ORGANISM  Streptococcus thermophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1869650)
  AUTHORS   Somerville,V.
  TITLE     Streptococcus thermophilus and Lactobacillus delbrueckii from
            RMK202
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1869650)
  AUTHORS   Somerville,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2020) Fundamental Microbiology, University of
            Lausanne, Biophore, Lausanne, Switzerland 1015, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACSUI000000000.1.
            The Streptococcus thermophilus whole genome shotgun (WGS) project
            has the project accession NZ_JACSUI000000000.  This version of the
            project (01) has the accession number NZ_JACSUI010000000, and
            consists of sequences JACSUI010000001-JACSUI010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: Flye v. 2.7.1-b1590
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017367065.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:35:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,956
            CDSs (total)                      :: 1,864
            Genes (coding)                    :: 1,628
            CDSs (with protein)               :: 1,628
            Genes (RNA)                       :: 92
            rRNAs                             :: 6, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 236
            CDSs (without protein)            :: 236
            Pseudo Genes (ambiguous residues) :: 0 of 236
            Pseudo Genes (frameshifted)       :: 152 of 236
            Pseudo Genes (incomplete)         :: 90 of 236
            Pseudo Genes (internal stop)      :: 104 of 236
            Pseudo Genes (multiple problems)  :: 94 of 236
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869650
                     /organism="Streptococcus thermophilus"
                     /mol_type="genomic DNA"
                     /strain="24854"
                     /isolation_source="Cheese starter culture"
                     /db_xref="taxon:1308"
                     /geo_loc_name="Switzerland"
                     /collection_date="2019"
WGS         JACSUI010000001-JACSUI010000002
WGS_SCAFLD  NZ_JACSUI010000001-NZ_JACSUI010000002
//
LOCUS       NZ_JACSUP010000000   1882333 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus thermophilus strain 13494, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACSUP000000000
VERSION     NZ_JACSUP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15923537
            Assembly: GCF_017367225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus thermophilus
  ORGANISM  Streptococcus thermophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1882333)
  AUTHORS   Somerville,V.
  TITLE     Streptococcus thermophilus and Lactobacillus delbrueckii from
            RMK202
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1882333)
  AUTHORS   Somerville,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2020) Fundamental Microbiology, University of
            Lausanne, Biophore, Lausanne, Switzerland 1015, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACSUP000000000.1.
            The Streptococcus thermophilus whole genome shotgun (WGS) project
            has the project accession NZ_JACSUP000000000.  This version of the
            project (01) has the accession number NZ_JACSUP010000000, and
            consists of sequences JACSUP010000001-JACSUP010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: Flye v. 2.7.1-b1590
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017367225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:34:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,970
            CDSs (total)                      :: 1,882
            Genes (coding)                    :: 1,645
            CDSs (with protein)               :: 1,645
            Genes (RNA)                       :: 88
            rRNAs                             :: 5, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 237
            CDSs (without protein)            :: 237
            Pseudo Genes (ambiguous residues) :: 0 of 237
            Pseudo Genes (frameshifted)       :: 152 of 237
            Pseudo Genes (incomplete)         :: 92 of 237
            Pseudo Genes (internal stop)      :: 106 of 237
            Pseudo Genes (multiple problems)  :: 95 of 237
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882333
                     /organism="Streptococcus thermophilus"
                     /mol_type="genomic DNA"
                     /strain="13494"
                     /isolation_source="Cheese starter culture"
                     /db_xref="taxon:1308"
                     /geo_loc_name="Switzerland"
                     /collection_date="1984"
WGS         JACSUP010000001-JACSUP010000002
WGS_SCAFLD  NZ_JACSUP010000001-NZ_JACSUP010000002
//
LOCUS       NZ_JUWX01000000      2466155 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain 691_SWAR, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUWX00000000
VERSION     NZ_JUWX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197895
            Assembly: GCF_001073945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2466155)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2466155)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUWX00000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JUWX00000000.  This version of the project
            (01) has the accession number NZ_JUWX01000000, and consists of
            sequences JUWX01000001-JUWX01000083.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 23x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001073945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:39:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,428
            CDSs (total)                      :: 2,398
            Genes (coding)                    :: 2,339
            CDSs (with protein)               :: 2,339
            Genes (RNA)                       :: 30
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 23
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 15 of 59
            Pseudo Genes (incomplete)         :: 34 of 59
            Pseudo Genes (internal stop)      :: 15 of 59
            Pseudo Genes (multiple problems)  :: 5 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2466155
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="691_SWAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUWX01000001-JUWX01000083
WGS_SCAFLD  NZ_JUWX01000001-NZ_JUWX01000083
//
LOCUS       NZ_JWCV01000000      2025600 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mitis strain 1111_SMIT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWCV00000000
VERSION     NZ_JWCV00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197065
            Assembly: GCF_001070205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mitis
  ORGANISM  Streptococcus mitis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus mitis group.
REFERENCE   1  (bases 1 to 2025600)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025600)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWCV00000000.1.
            The Streptococcus mitis whole genome shotgun (WGS) project has the
            project accession NZ_JWCV00000000.  This version of the project
            (01) has the accession number NZ_JWCV01000000, and consists of
            sequences JWCV01000001-JWCV01000178.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 17x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001070205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:30:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,050
            CDSs (total)                      :: 2,016
            Genes (coding)                    :: 1,923
            CDSs (with protein)               :: 1,923
            Genes (RNA)                       :: 34
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 28
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 24 of 93
            Pseudo Genes (incomplete)         :: 74 of 93
            Pseudo Genes (internal stop)      :: 11 of 93
            Pseudo Genes (multiple problems)  :: 14 of 93
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025600
                     /organism="Streptococcus mitis"
                     /mol_type="genomic DNA"
                     /strain="1111_SMIT"
                     /host="Homo sapiens"
                     /db_xref="taxon:28037"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JWCV01000001-JWCV01000178
WGS_SCAFLD  NZ_JWCV01000001-NZ_JWCV01000178
//
LOCUS       NZ_LDTU01000000      2842075 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus xylosus strain NS341, whole genome shotgun
            sequencing project.
ACCESSION   NZ_LDTU00000000
VERSION     NZ_LDTU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03401363
            Assembly: GCF_001476985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus xylosus
  ORGANISM  Staphylococcus xylosus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2842075)
  AUTHORS   Midha,S., Bansal,K., Sharma,S., Kumar,N., Patil,P.P., Chaudhry,V.
            and Patil,P.B.
  TITLE     Genomic Resource of Rice Seed Associated Bacteria
  JOURNAL   Front Microbiol 6, 1551 (2016)
   PUBMED   26793183
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2842075)
  AUTHORS   Midha,S., Bansal,K., Chaudhry,V., Sharma,S., Kumar,N., Patil,P.P.
            and Patil,P.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-APR-2015) Bacterial Genomics and Evolution
            Laboratory, CSIR-Institute of Microbial Technology, Sector 39A,
            Chandigarh, Chandigarh 160036, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LDTU00000000.1.
            The Staphylococcus xylosus whole genome shotgun (WGS) project has
            the project accession NZ_LDTU00000000.  This version of the project
            (01) has the accession number NZ_LDTU01000000, and consists of
            sequences LDTU01000001-LDTU01000111.
            Source DNA available from Bacterial Genomics and Evolutionary
            Laboratory, CSIR-Institute of Microbial Technology, Chandigarh,
            India.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench v. 7.5
            Genome Coverage       :: 89x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001476985.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,747
            CDSs (total)                      :: 2,682
            Genes (coding)                    :: 2,650
            CDSs (with protein)               :: 2,650
            Genes (RNA)                       :: 65
            rRNAs                             :: 4, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 9 of 32
            Pseudo Genes (incomplete)         :: 19 of 32
            Pseudo Genes (internal stop)      :: 8 of 32
            Pseudo Genes (multiple problems)  :: 3 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2842075
                     /organism="Staphylococcus xylosus"
                     /mol_type="genomic DNA"
                     /strain="NS341"
                     /host="Oryza sativa"
                     /db_xref="taxon:1288"
                     /geo_loc_name="India"
                     /collection_date="2013"
WGS         LDTU01000001-LDTU01000111
WGS_SCAFLD  NZ_LDTU01000001-NZ_LDTU01000111
//
LOCUS       NZ_JVCY01000000      2271084 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain 540.rep2_SPAR, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JVCY00000000
VERSION     NZ_JVCY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197738
            Assembly: GCF_001076955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2271084)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271084)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JVCY00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_JVCY00000000.  This version of the
            project (01) has the accession number NZ_JVCY01000000, and consists
            of sequences JVCY01000001-JVCY01000080.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 40x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001076955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:36:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,240
            CDSs (total)                      :: 2,194
            Genes (coding)                    :: 2,144
            CDSs (with protein)               :: 2,144
            Genes (RNA)                       :: 46
            rRNAs                             :: 5, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 5 (16S)
            tRNAs                             :: 36
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 16 of 50
            Pseudo Genes (incomplete)         :: 37 of 50
            Pseudo Genes (internal stop)      :: 4 of 50
            Pseudo Genes (multiple problems)  :: 7 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271084
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="540.rep2_SPAR"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JVCY01000001-JVCY01000080
WGS_SCAFLD  NZ_JVCY01000001-NZ_JVCY01000080
//
LOCUS       NZ_JUVF01000000      2019639 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus oralis strain 734_SORA, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUVF00000000
VERSION     NZ_JUVF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197939
            Assembly: GCF_001074085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus oralis
  ORGANISM  Streptococcus oralis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2019639)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019639)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUVF00000000.1.
            The Streptococcus oralis whole genome shotgun (WGS) project has the
            project accession NZ_JUVF00000000.  This version of the project
            (01) has the accession number NZ_JUVF01000000, and consists of
            sequences JUVF01000001-JUVF01000261.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 17x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001074085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:40:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,122
            CDSs (total)                      :: 2,089
            Genes (coding)                    :: 1,987
            CDSs (with protein)               :: 1,987
            Genes (RNA)                       :: 33
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 27
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 15 of 102
            Pseudo Genes (incomplete)         :: 87 of 102
            Pseudo Genes (internal stop)      :: 7 of 102
            Pseudo Genes (multiple problems)  :: 5 of 102
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019639
                     /organism="Streptococcus oralis"
                     /mol_type="genomic DNA"
                     /strain="734_SORA"
                     /host="Homo sapiens"
                     /db_xref="taxon:1303"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUVF01000001-JUVF01000261
WGS_SCAFLD  NZ_JUVF01000001-NZ_JUVF01000261
//
LOCUS       NZ_JWGS01000000      2035965 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain 1002_SMUT, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JWGS00000000
VERSION     NZ_JWGS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03196964
            Assembly: GCF_001069835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2035965)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035965)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JWGS00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_JWGS00000000.  This version of the project
            (01) has the accession number NZ_JWGS01000000, and consists of
            sequences JWGS01000001-JWGS01000049.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 13x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001069835.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:41:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,017
            CDSs (total)                      :: 1,967
            Genes (coding)                    :: 1,890
            CDSs (with protein)               :: 1,890
            Genes (RNA)                       :: 50
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 42 of 77
            Pseudo Genes (incomplete)         :: 42 of 77
            Pseudo Genes (internal stop)      :: 21 of 77
            Pseudo Genes (multiple problems)  :: 20 of 77
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035965
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="1002_SMUT"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JWGS01000001-JWGS01000049
WGS_SCAFLD  NZ_JWGS01000001-NZ_JWGS01000049
//
LOCUS       NZ_PVSU01000000      1788808 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus anginosus strain p35gc, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PVSU00000000
VERSION     NZ_PVSU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08611360
            Assembly: GCF_002999515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus anginosus
  ORGANISM  Streptococcus anginosus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus; Streptococcus anginosus group.
REFERENCE   1  (bases 1 to 1788808)
  AUTHORS   Fisher,L.E. and Russell,R.R.
  TITLE     The isolation and characterization of milleri group streptococci
            from dental periapical abscesses
  JOURNAL   J Dent Res 72 (8), 1191-1193 (1993)
   PUBMED   8360361
REFERENCE   2  (bases 1 to 1788808)
  AUTHORS   Merritt,J., Jakubovics,N., Macloskey,C., Archuleta,J., Fisher,L.E.,
            Raghavan,R. and Russell,R.B.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-MAR-2018) Restorative Dentistry, Oregon Health and
            Science University, 3181 SW Sam Jackson Park Rd, Portland, OR
            97239, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PVSU00000000.1.
            The Streptococcus anginosus whole genome shotgun (WGS) project has
            the project accession NZ_PVSU00000000.  This version of the project
            (01) has the accession number NZ_PVSU01000000, and consists of
            sequences PVSU01000001-PVSU01000052.
            The strain and BioSample of this WGS project were corrected on
            March 26, 2018.
            
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2014
            Assembly Method        :: CLC Genomics Workbench v. 9
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 4146x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002999515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:59:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,787
            CDSs (total)                      :: 1,740
            Genes (coding)                    :: 1,644
            CDSs (with protein)               :: 1,644
            Genes (RNA)                       :: 47
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 39
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 44 of 96
            Pseudo Genes (incomplete)         :: 41 of 96
            Pseudo Genes (internal stop)      :: 30 of 96
            Pseudo Genes (multiple problems)  :: 16 of 96
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788808
                     /organism="Streptococcus anginosus"
                     /mol_type="genomic DNA"
                     /strain="p35gc"
                     /isolation_source="pus from dental abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:1328"
                     /geo_loc_name="United Kingdom: Newcastle University"
                     /collection_date="2014-08-08"
                     /collected_by="Clinical Pathology Lab"
WGS         PVSU01000001-PVSU01000052
WGS_SCAFLD  NZ_PVSU01000001-NZ_PVSU01000052
//
LOCUS       NZ_JBRAZR010000000   3996415 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sinomonas sp. T428B, whole genome shotgun sequencing project.
ACCESSION   NZ_JBRAZR000000000
VERSION     NZ_JBRAZR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN50480399
            Assembly: GCF_056780155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sinomonas sp. T428B
  ORGANISM  Sinomonas sp. T428B
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Micrococcaceae; Sinomonas.
REFERENCE   1  (bases 1 to 3996415)
  AUTHORS   Garrell,A.-K., Swift,J.F., Ginnan,N.A., Pal,G., Tso,F., Ford,N.E.,
            Zervas,A., Wagner,M.R. and Kleiner,M.
  TITLE     Culture Collection of Maize Root-Associated Bacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3996415)
  AUTHORS   Garrell,A.-K., Swift,J.F., Pal,G., Pestalozzi,C., Castrillo,G.,
            Schlaeppi,K., Wagner,M.R. and Kleiner,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2025) Plant and Microbial Biology, North Carolina
            State University, 112 Derieux Pl, Raleigh, NC 27607, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBRAZR000000000.1.
            The Sinomonas sp. T428B whole genome shotgun (WGS) project has the
            project accession NZ_JBRAZR000000000.  This version of the project
            (01) has the accession number NZ_JBRAZR010000000, and consists of
            sequences JBRAZR010000001-JBRAZR010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31x
            Sequencing Technology  :: Oxford Nanopore Technology
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780155.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:07:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,697
            CDSs (total)                      :: 3,630
            Genes (coding)                    :: 3,611
            CDSs (with protein)               :: 3,611
            Genes (RNA)                       :: 67
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 19
            CDSs (without protein)            :: 19
            Pseudo Genes (ambiguous residues) :: 0 of 19
            Pseudo Genes (frameshifted)       :: 6 of 19
            Pseudo Genes (incomplete)         :: 15 of 19
            Pseudo Genes (internal stop)      :: 0 of 19
            Pseudo Genes (multiple problems)  :: 2 of 19
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3996415
                     /organism="Sinomonas sp. T428B"
                     /mol_type="genomic DNA"
                     /strain="T428B"
                     /db_xref="taxon:3385800"
                     /geo_loc_name="Cape Verde"
                     /lat_lon="15.278 N 23.572 W"
WGS         JBRAZR010000001-JBRAZR010000002
WGS_SCAFLD  NZ_JBRAZR010000001-NZ_JBRAZR010000002
//
LOCUS       NZ_PZFJ01000000      2457988 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain SNUC 3412, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZFJ00000000
VERSION     NZ_PZFJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173217
            Assembly: GCF_003042935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2457988)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457988)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZFJ00000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_PZFJ00000000.  This version of the project
            (01) has the accession number NZ_PZFJ01000000, and consists of
            sequences PZFJ01000001-PZFJ01000204.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 36x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003042935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:11:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,407
            Genes (coding)                    :: 2,330
            CDSs (with protein)               :: 2,330
            Genes (RNA)                       :: 78
            rRNAs                             :: 7, 6, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 5 (16S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 8 of 77
            Pseudo Genes (incomplete)         :: 53 of 77
            Pseudo Genes (internal stop)      :: 19 of 77
            Pseudo Genes (multiple problems)  :: 3 of 77
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457988
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="SNUC 3412"
                     /isolation_source="Herd 325"
                     /host="Bos taurus"
                     /db_xref="taxon:1292"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="2007-04-24"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZFJ01000001-PZFJ01000204
WGS_SCAFLD  NZ_PZFJ01000001-NZ_PZFJ01000204
//
LOCUS       NZ_JBSPMB010000000   2084161 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp01, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBSPMB000000000
VERSION     NZ_JBSPMB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN53476622
            Assembly: GCF_056780055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2084161)
  AUTHORS   Xing,Y.-Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-NOV-2025) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang Street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBSPMB000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBSPMB000000000.  This version of the
            project (01) has the accession number NZ_JBSPMB010000000, and
            consists of sequences JBSPMB010000001-JBSPMB010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Celera Assembler v. 1.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 260.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:47:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,155
            CDSs (total)                      :: 2,094
            Genes (coding)                    :: 1,941
            CDSs (with protein)               :: 1,941
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 66 of 153
            Pseudo Genes (incomplete)         :: 86 of 153
            Pseudo Genes (internal stop)      :: 44 of 153
            Pseudo Genes (multiple problems)  :: 34 of 153
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084161
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp01"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China"
                     /collection_date="2021"
WGS         JBSPMB010000001-JBSPMB010000037
WGS_SCAFLD  NZ_JBSPMB010000001-NZ_JBSPMB010000037
//
LOCUS       NZ_PZEU01000000      2583601 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain SNUC 5989, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZEU00000000
VERSION     NZ_PZEU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173224
            Assembly: GCF_003043195.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2583601)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2583601)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZEU00000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_PZEU00000000.  This version of the project
            (01) has the accession number NZ_PZEU01000000, and consists of
            sequences PZEU01000001-PZEU01000143.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 47x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003043195.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:20:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,624
            CDSs (total)                      :: 2,540
            Genes (coding)                    :: 2,470
            CDSs (with protein)               :: 2,470
            Genes (RNA)                       :: 84
            rRNAs                             :: 6, 8, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 7, 3 (16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 14 of 70
            Pseudo Genes (incomplete)         :: 46 of 70
            Pseudo Genes (internal stop)      :: 15 of 70
            Pseudo Genes (multiple problems)  :: 5 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2583601
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="SNUC 5989"
                     /isolation_source="Herd 407"
                     /host="Bos taurus"
                     /db_xref="taxon:1292"
                     /geo_loc_name="Canada: Atlantic"
                     /collection_date="2008-03-21"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZEU01000001-PZEU01000143
WGS_SCAFLD  NZ_PZEU01000001-NZ_PZEU01000143
//
LOCUS       NZ_PZFI01000000      2584169 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain SNUC 3575, whole genome shotgun
            sequencing project.
ACCESSION   NZ_PZFI00000000
VERSION     NZ_PZFI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173218
            Assembly: GCF_003043285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2584169)
  AUTHORS   Naushad,S., Barkema,H.W., Luby,C., Condas,L.A., Nobrega,D.B.,
            Carson,D.A. and De Buck,J.
  TITLE     Comprehensive Phylogenetic Analysis of Bovine Non-aureus
            Staphylococci Species Based on Whole-Genome Sequencing
  JOURNAL   Front Microbiol 7, 1990 (2016)
   PUBMED   28066335
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584169)
  AUTHORS   Naushad,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2018) Production Animal Health, University of
            Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N 4N1, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PZFI00000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_PZFI00000000.  This version of the project
            (01) has the accession number NZ_PZFI01000000, and consists of
            sequences PZFI01000001-PZFI01000100.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003043285.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:16:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,600
            CDSs (total)                      :: 2,518
            Genes (coding)                    :: 2,432
            CDSs (with protein)               :: 2,432
            Genes (RNA)                       :: 82
            rRNAs                             :: 5, 7, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 6 (16S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 23 of 86
            Pseudo Genes (incomplete)         :: 59 of 86
            Pseudo Genes (internal stop)      :: 17 of 86
            Pseudo Genes (multiple problems)  :: 13 of 86
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584169
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="SNUC 3575"
                     /isolation_source="Herd 225"
                     /host="Bos taurus"
                     /db_xref="taxon:1292"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2007-05-09"
                     /collected_by="Canadian Bovine Mastitis Research Network
                     (CBMRN)"
WGS         PZFI01000001-PZFI01000100
WGS_SCAFLD  NZ_PZFI01000001-NZ_PZFI01000100
//
LOCUS       NZ_JBWOEQ010000000   2187295 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp50, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOEQ000000000
VERSION     NZ_JBWOEQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715693
            Assembly: GCF_056780325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2187295)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOEQ000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOEQ000000000.  This version of the
            project (01) has the accession number NZ_JBWOEQ010000000, and
            consists of sequences JBWOEQ010000001-JBWOEQ010000031.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:55:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,257
            CDSs (total)                      :: 2,180
            Genes (coding)                    :: 2,009
            CDSs (with protein)               :: 2,009
            Genes (RNA)                       :: 77
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 65
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 171
            CDSs (without protein)            :: 171
            Pseudo Genes (ambiguous residues) :: 0 of 171
            Pseudo Genes (frameshifted)       :: 79 of 171
            Pseudo Genes (incomplete)         :: 96 of 171
            Pseudo Genes (internal stop)      :: 52 of 171
            Pseudo Genes (multiple problems)  :: 44 of 171
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187295
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp50"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOEQ010000001-JBWOEQ010000031
WGS_SCAFLD  NZ_JBWOEQ010000001-NZ_JBWOEQ010000031
//
LOCUS       NZ_JBWOEO010000000   2143241 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp52, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOEO000000000
VERSION     NZ_JBWOEO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715695
            Assembly: GCF_056780235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2143241)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOEO000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOEO000000000.  This version of the
            project (01) has the accession number NZ_JBWOEO010000000, and
            consists of sequences JBWOEO010000001-JBWOEO010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:00:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,211
            CDSs (total)                      :: 2,145
            Genes (coding)                    :: 1,976
            CDSs (with protein)               :: 1,976
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 169
            CDSs (without protein)            :: 169
            Pseudo Genes (ambiguous residues) :: 0 of 169
            Pseudo Genes (frameshifted)       :: 76 of 169
            Pseudo Genes (incomplete)         :: 92 of 169
            Pseudo Genes (internal stop)      :: 53 of 169
            Pseudo Genes (multiple problems)  :: 41 of 169
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143241
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp52"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOEO010000001-JBWOEO010000037
WGS_SCAFLD  NZ_JBWOEO010000001-NZ_JBWOEO010000037
//
LOCUS       NZ_JBWOES010000000   2140877 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp48, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOES000000000
VERSION     NZ_JBWOES000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715691
            Assembly: GCF_056780345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2140877)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOES000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOES000000000.  This version of the
            project (01) has the accession number NZ_JBWOES010000000, and
            consists of sequences JBWOES010000001-JBWOES010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:51:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,199
            CDSs (total)                      :: 2,130
            Genes (coding)                    :: 1,960
            CDSs (with protein)               :: 1,960
            Genes (RNA)                       :: 69
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 170
            CDSs (without protein)            :: 170
            Pseudo Genes (ambiguous residues) :: 0 of 170
            Pseudo Genes (frameshifted)       :: 71 of 170
            Pseudo Genes (incomplete)         :: 95 of 170
            Pseudo Genes (internal stop)      :: 52 of 170
            Pseudo Genes (multiple problems)  :: 36 of 170
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140877
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp48"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOES010000001-JBWOES010000025
WGS_SCAFLD  NZ_JBWOES010000001-NZ_JBWOES010000025
//
LOCUS       NZ_QGOQ01000000      2704129 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus pseudintermedius strain MAD417, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QGOQ00000000
VERSION     NZ_QGOQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09206903
            Assembly: GCF_006382325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus; Staphylococcus intermedius
            group.
REFERENCE   1  (bases 1 to 2704129)
  AUTHORS   Jones,L.P., Davis,M.A., Devendra,S.H. and Paul,N.C.
  TITLE     Evaluation of genotyping methods for Staphylococcus
            pseudintermedius at local, regional and global scales
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2704129)
  AUTHORS   Jones,L.P., Davis,M.A., Devendra,S.H. and Paul,N.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAY-2018) Global Animal Health, Washington State
            University, 240 Ott Rd, Pullman, WA 99164, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QGOQ00000000.1.
            The Staphylococcus pseudintermedius whole genome shotgun (WGS)
            project has the project accession NZ_QGOQ00000000.  This version of
            the project (01) has the accession number NZ_QGOQ01000000, and
            consists of sequences QGOQ01000001-QGOQ01000049.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2018
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 607x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_006382325.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:38:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,645
            CDSs (total)                      :: 2,586
            Genes (coding)                    :: 2,522
            CDSs (with protein)               :: 2,522
            Genes (RNA)                       :: 59
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 20 of 64
            Pseudo Genes (incomplete)         :: 46 of 64
            Pseudo Genes (internal stop)      :: 13 of 64
            Pseudo Genes (multiple problems)  :: 14 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704129
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /strain="MAD417"
                     /host="canine"
                     /db_xref="taxon:283734"
                     /geo_loc_name="Canada"
                     /collection_date="2012"
                     /genotype="MLST 498"
WGS         QGOQ01000001-QGOQ01000049
WGS_SCAFLD  NZ_QGOQ01000001-NZ_QGOQ01000049
//
LOCUS       NZ_JBWOER010000000   2202492 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp49, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOER000000000
VERSION     NZ_JBWOER000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715692
            Assembly: GCF_056780305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2202492)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOER000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOER000000000.  This version of the
            project (01) has the accession number NZ_JBWOER010000000, and
            consists of sequences JBWOER010000001-JBWOER010000044.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:56:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,308
            CDSs (total)                      :: 2,245
            Genes (coding)                    :: 2,080
            CDSs (with protein)               :: 2,080
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 69 of 165
            Pseudo Genes (incomplete)         :: 92 of 165
            Pseudo Genes (internal stop)      :: 42 of 165
            Pseudo Genes (multiple problems)  :: 32 of 165
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202492
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp49"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOER010000001-JBWOER010000044
WGS_SCAFLD  NZ_JBWOER010000001-NZ_JBWOER010000044
//
LOCUS       NZ_JBSPTE010000000   2166458 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp04, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBSPTE000000000
VERSION     NZ_JBSPTE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN53477146
            Assembly: GCF_056780075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2166458)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-NOV-2025) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBSPTE000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBSPTE000000000.  This version of the
            project (01) has the accession number NZ_JBSPTE010000000, and
            consists of sequences JBSPTE010000001-JBSPTE010000037.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Celera Assembler v. 1.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780075.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:54:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,261
            CDSs (total)                      :: 2,166
            Genes (coding)                    :: 2,007
            CDSs (with protein)               :: 2,007
            Genes (RNA)                       :: 95
            rRNAs                             :: 5, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 159
            CDSs (without protein)            :: 159
            Pseudo Genes (ambiguous residues) :: 0 of 159
            Pseudo Genes (frameshifted)       :: 68 of 159
            Pseudo Genes (incomplete)         :: 88 of 159
            Pseudo Genes (internal stop)      :: 45 of 159
            Pseudo Genes (multiple problems)  :: 34 of 159
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166458
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp04"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China"
                     /collection_date="2021"
WGS         JBSPTE010000001-JBSPTE010000037
WGS_SCAFLD  NZ_JBSPTE010000001-NZ_JBSPTE010000037
//
LOCUS       NZ_WMYS01000000      2040673 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus parasanguinis strain BIOML-A18, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WMYS00000000
VERSION     NZ_WMYS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11946373
            Assembly: GCF_009717525.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus parasanguinis
  ORGANISM  Streptococcus parasanguinis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2040673)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat Med 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (bases 1 to 2040673)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WMYS00000000.1.
            The Streptococcus parasanguinis whole genome shotgun (WGS) project
            has the project accession NZ_WMYS00000000.  This version of the
            project (01) has the accession number NZ_WMYS01000000, and consists
            of sequences WMYS01000001-WMYS01000010.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 182.743x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009717525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:44:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,998
            CDSs (total)                      :: 1,948
            Genes (coding)                    :: 1,915
            CDSs (with protein)               :: 1,915
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 8 of 33
            Pseudo Genes (incomplete)         :: 21 of 33
            Pseudo Genes (internal stop)      :: 9 of 33
            Pseudo Genes (multiple problems)  :: 4 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040673
                     /organism="Streptococcus parasanguinis"
                     /mol_type="genomic DNA"
                     /strain="BIOML-A18"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:1318"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="2016-02-19"
WGS         WMYS01000001-WMYS01000010
WGS_SCAFLD  NZ_WMYS01000001-NZ_WMYS01000010
//
LOCUS       NZ_JBWOET010000000   2277265 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp47, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOET000000000
VERSION     NZ_JBWOET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715690
            Assembly: GCF_056780365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2277265)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOET000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOET000000000.  This version of the
            project (01) has the accession number NZ_JBWOET010000000, and
            consists of sequences JBWOET010000001-JBWOET010000029.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:57:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,437
            CDSs (total)                      :: 2,362
            Genes (coding)                    :: 2,172
            CDSs (with protein)               :: 2,172
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 190
            CDSs (without protein)            :: 190
            Pseudo Genes (ambiguous residues) :: 0 of 190
            Pseudo Genes (frameshifted)       :: 70 of 190
            Pseudo Genes (incomplete)         :: 111 of 190
            Pseudo Genes (internal stop)      :: 57 of 190
            Pseudo Genes (multiple problems)  :: 40 of 190
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2277265
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp47"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOET010000001-JBWOET010000029
WGS_SCAFLD  NZ_JBWOET010000001-NZ_JBWOET010000029
//
LOCUS       NZ_QYCL01000000      2012907 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus mutans strain UAB-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_QYCL00000000
VERSION     NZ_QYCL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09101742
            Assembly: GCF_012642365.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus mutans
  ORGANISM  Streptococcus mutans
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2012907)
  AUTHORS   Momeni,S.S., Beno,S.M., Baker,J.L., Edlund,A., Ghazal,T.,
            Childers,N.K. and Wu,H.
  TITLE     Caries-Associated Biosynthetic Gene Clusters in Streptococcus
            mutans
  JOURNAL   J Dent Res 99 (8), 969-976 (2020)
   PUBMED   32298190
REFERENCE   2  (bases 1 to 2012907)
  AUTHORS   Momeni,S. and Childers,N.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2018) Pediatric Dentistry, University of Alabama
            at Birmingham, LHRB 238, 701 19th Street South, Birmingham, AL
            35294-0007, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QYCL00000000.1.
            The Streptococcus mutans whole genome shotgun (WGS) project has the
            project accession NZ_QYCL00000000.  This version of the project
            (01) has the accession number NZ_QYCL01000000, and consists of
            sequences QYCL01000001-QYCL01000032.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: SEP-2018
            Assembly Method        :: SPAdes v. 3.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.53756157635468x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_012642365.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:04:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,003
            CDSs (total)                      :: 1,945
            Genes (coding)                    :: 1,876
            CDSs (with protein)               :: 1,876
            Genes (RNA)                       :: 58
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 34 of 69
            Pseudo Genes (incomplete)         :: 37 of 69
            Pseudo Genes (internal stop)      :: 26 of 69
            Pseudo Genes (multiple problems)  :: 22 of 69
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012907
                     /organism="Streptococcus mutans"
                     /mol_type="genomic DNA"
                     /strain="UAB-2"
                     /serotype="C"
                     /isolation_source="plaque"
                     /host="Homo sapiens"
                     /db_xref="taxon:1309"
                     /geo_loc_name="USA: Alabama"
                     /lat_lon="32.44 N 87.51 W"
                     /collection_date="2009-02-10"
                     /collected_by="Noel Childers-UAB"
                     /genotype="G01"
WGS         QYCL01000001-QYCL01000032
WGS_SCAFLD  NZ_QYCL01000001-NZ_QYCL01000032
//
LOCUS       NZ_WSFL01000000      2747902 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus saprophyticus strain SDC2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_WSFL00000000
VERSION     NZ_WSFL00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13515813
            Assembly: GCF_011421555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus saprophyticus
  ORGANISM  Staphylococcus saprophyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2747902)
  AUTHORS   Ratchatacharoenpong,S., Mallik,F., Park,C. and Andam,C.
  TITLE     Various species of Staphylococcus isolated from Sevilleta Desert,
            New Mexico, genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2747902)
  AUTHORS   Ratchatacharoenpong,S., Mallik,F., Park,C. and Andam,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2019) Biology, University at Albany, 1400
            Washington Ave, Biology Dept, Albany, NY 12222-0001, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WSFL00000000.1.
            The Staphylococcus saprophyticus whole genome shotgun (WGS) project
            has the project accession NZ_WSFL00000000.  This version of the
            project (01) has the accession number NZ_WSFL01000000, and consists
            of sequences WSFL01000001-WSFL01000030.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2019
            Assembly Method        :: SPAdes v. October 2019
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 77.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011421555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:12:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,791
            CDSs (total)                      :: 2,714
            Genes (coding)                    :: 2,631
            CDSs (with protein)               :: 2,631
            Genes (RNA)                       :: 77
            rRNAs                             :: 5, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 5 (5S)
            partial rRNAs                     :: 6, 4 (16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 31 of 83
            Pseudo Genes (incomplete)         :: 42 of 83
            Pseudo Genes (internal stop)      :: 22 of 83
            Pseudo Genes (multiple problems)  :: 12 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747902
                     /organism="Staphylococcus saprophyticus"
                     /mol_type="genomic DNA"
                     /strain="SDC2"
                     /isolation_source="desert soil"
                     /db_xref="taxon:29385"
                     /geo_loc_name="USA: New Mexico, Sevilleta Desert"
                     /collection_date="2018-05-17"
WGS         WSFL01000001-WSFL01000030
WGS_SCAFLD  NZ_WSFL01000001-NZ_WSFL01000030
//
LOCUS       NZ_QVUX01000000      2639106 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus saprophyticus strain s43, whole genome shotgun
            sequencing project.
ACCESSION   NZ_QVUX00000000
VERSION     NZ_QVUX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN09865979
            Assembly: GCF_016808915.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus saprophyticus
  ORGANISM  Staphylococcus saprophyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2639106)
  AUTHORS   Lee,M.D.
  TITLE     ISS Staphylococcus Isolate Genomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2639106)
  AUTHORS   Lee,M.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2018) Space Biology, NASA Ames Research Center,
            Moffett Blvd, Mountain View, CA 94035, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            QVUX00000000.1.
            The Staphylococcus saprophyticus whole genome shotgun (WGS) project
            has the project accession NZ_QVUX00000000.  This version of the
            project (01) has the accession number NZ_QVUX01000000, and consists
            of sequences QVUX01000001-QVUX01000021.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 827x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016808915.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:25:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,643
            CDSs (total)                      :: 2,588
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1 (5S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 36 of 88
            Pseudo Genes (incomplete)         :: 50 of 88
            Pseudo Genes (internal stop)      :: 23 of 88
            Pseudo Genes (multiple problems)  :: 19 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639106
                     /organism="Staphylococcus saprophyticus"
                     /mol_type="genomic DNA"
                     /strain="s43"
                     /isolation_source="air"
                     /db_xref="taxon:29385"
                     /geo_loc_name="USA: International Space Station"
                     /lat_lon="29.56 N 95.10 W"
                     /collection_date="2015-03-09"
WGS         QVUX01000001-QVUX01000021
WGS_SCAFLD  NZ_QVUX01000001-NZ_QVUX01000021
//
LOCUS       NZ_JAFFRP010000000   2577423 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus saprophyticus strain HAF121, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFFRP000000000
VERSION     NZ_JAFFRP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17937442
            Assembly: GCF_017315565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus saprophyticus
  ORGANISM  Staphylococcus saprophyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2577423)
  AUTHORS   Ahle,C.M., Stodkilde,K., Poehlein,A., Hupeden,J. and Bruggemann,H.
  TITLE     Comparison of three amplicon sequencing approaches to determine
            staphylococcal populations on human skin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2577423)
  AUTHORS   Poehlein,A., Ahle,C.M. and Bruggemann,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2021) Department of Biomedicine, Aarhus
            University, Hoegh-Guldbergs Gade 10, Aarhus C 8000, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFFRP000000000.1.
            The Staphylococcus saprophyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAFFRP000000000.  This version of the
            project (01) has the accession number NZ_JAFFRP010000000, and
            consists of sequences JAFFRP010000001-JAFFRP010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JUN-2019
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 164x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017315565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:33:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,562
            CDSs (total)                      :: 2,491
            Genes (coding)                    :: 2,409
            CDSs (with protein)               :: 2,409
            Genes (RNA)                       :: 71
            rRNAs                             :: 5, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1 (5S, 23S)
            partial rRNAs                     :: 4 (16S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 33 of 82
            Pseudo Genes (incomplete)         :: 42 of 82
            Pseudo Genes (internal stop)      :: 23 of 82
            Pseudo Genes (multiple problems)  :: 16 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577423
                     /organism="Staphylococcus saprophyticus"
                     /mol_type="genomic DNA"
                     /strain="HAF121"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:29385"
                     /geo_loc_name="Germany: Hamburg"
                     /collection_date="2019"
WGS         JAFFRP010000001-JAFFRP010000020
WGS_SCAFLD  NZ_JAFFRP010000001-NZ_JAFFRP010000020
//
LOCUS       NZ_JAFJNX010000000   2539289 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus saprophyticus strain ST391, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAFJNX000000000
VERSION     NZ_JAFJNX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17832979
            Assembly: GCF_017163875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus saprophyticus
  ORGANISM  Staphylococcus saprophyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2539289)
  AUTHORS   Igbinosa,E.O., Brinks,E., Beshiru,A., Igbinosa,I.H., Stein,M.,
            Cho,G.-S. and Franz,C.M.A.P.
  TITLE     Draft Genome Sequence of Staphylococcus saprophyticus strains
            isolated from African Fermented Nono in Benin City, Nigeria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2539289)
  AUTHORS   Igbinosa,E.O., Brinks,E., Beshiru,A., Igbinosa,I.H., Stein,M.,
            Cho,G.-S. and Franz,C.M.A.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2021) Microbiology and Biotechnology, Max
            Rubner-Institut, Hermann-Weigmann-Str. 1, Kiel 24103, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAFJNX000000000.1.
            The Staphylococcus saprophyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAFJNX000000000.  This version of the
            project (01) has the accession number NZ_JAFJNX010000000, and
            consists of sequences JAFJNX010000001-JAFJNX010000030.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 08-JAN-2021
            Assembly Method        :: SPAdes v. 3.15.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 93x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017163875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:37:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,540
            CDSs (total)                      :: 2,487
            Genes (coding)                    :: 2,411
            CDSs (with protein)               :: 2,411
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 76
            CDSs (without protein)            :: 76
            Pseudo Genes (ambiguous residues) :: 0 of 76
            Pseudo Genes (frameshifted)       :: 33 of 76
            Pseudo Genes (incomplete)         :: 41 of 76
            Pseudo Genes (internal stop)      :: 23 of 76
            Pseudo Genes (multiple problems)  :: 17 of 76
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539289
                     /organism="Staphylococcus saprophyticus"
                     /mol_type="genomic DNA"
                     /strain="ST391"
                     /isolation_source="fermented milk product nono"
                     /db_xref="taxon:29385"
                     /geo_loc_name="Nigeria: Aduwawa Market, Benin City"
                     /lat_lon="6.368796 N 5.684881 E"
                     /collection_date="2017-07-30"
WGS         JAFJNX010000001-JAFJNX010000030
WGS_SCAFLD  NZ_JAFJNX010000001-NZ_JAFJNX010000030
//
LOCUS       NZ_JALCYI010000000   2626778 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain acrok, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALCYI000000000
VERSION     NZ_JALCYI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11962566
            Assembly: GCF_022688885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2626778)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Uncovering new skin microbiome diversity through culturing and
            metagenomics
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2626778)
  AUTHORS   Conlan,S., Deming,C., Mullikin,J. and Segre,J.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2022) NISC, NIH Sequencing Center, 5625 Fishers
            Lane, Rockville, MD 20852, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALCYI000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JALCYI000000000.  This version of the
            project (01) has the accession number NZ_JALCYI010000000, and
            consists of sequences JALCYI010000001-JALCYI010000071.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022688885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:09:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,664
            CDSs (total)                      :: 2,600
            Genes (coding)                    :: 2,536
            CDSs (with protein)               :: 2,536
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (16S, 23S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 17 of 64
            Pseudo Genes (incomplete)         :: 38 of 64
            Pseudo Genes (internal stop)      :: 18 of 64
            Pseudo Genes (multiple problems)  :: 8 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626778
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="acrok"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="USA"
                     /collection_date="2019"
WGS         JALCYI010000001-JALCYI010000071
WGS_SCAFLD  NZ_JALCYI010000001-NZ_JALCYI010000071
//
LOCUS       NZ_JAKZQZ010000000   2072245 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus agalactiae strain 10/08, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKZQZ000000000
VERSION     NZ_JAKZQZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26533755
            Assembly: GCF_022586115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus agalactiae
  ORGANISM  Streptococcus agalactiae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2072245)
  AUTHORS   Kuleshevich,E., Azarov,D., Goncharov,A., Gostev,V., Kireeva,A. and
            Suvorov,A.
  TITLE     Structure determination of pathogenicity islands of Streptococcus
            agalactiae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2072245)
  AUTHORS   Kuleshevich,E., Azarov,D., Goncharov,A., Gostev,V., Kireeva,A. and
            Suvorov,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2022) Department of Molecular Microbiology,
            Federal State Budgetary Scientific Institution Institute of
            Experimental Medicine, Akademika Pavlova 12, St. Petersburg 197376,
            Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKZQZ000000000.1.
            The Streptococcus agalactiae whole genome shotgun (WGS) project has
            the project accession NZ_JAKZQZ000000000.  This version of the
            project (01) has the accession number NZ_JAKZQZ010000000, and
            consists of sequences JAKZQZ010000001-JAKZQZ010000011.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022586115.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:03:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,071
            CDSs (total)                      :: 2,017
            Genes (coding)                    :: 1,958
            CDSs (with protein)               :: 1,958
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 30 of 59
            Pseudo Genes (incomplete)         :: 28 of 59
            Pseudo Genes (internal stop)      :: 17 of 59
            Pseudo Genes (multiple problems)  :: 12 of 59
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072245
                     /organism="Streptococcus agalactiae"
                     /mol_type="genomic DNA"
                     /strain="10/08"
                     /host="Homo sapiens"
                     /db_xref="taxon:1311"
                     /geo_loc_name="Russia: Saint-Petersburg"
                     /collected_by="D. O. Ott Research Institute of Obstetrics
                     and Gynecology"
WGS         JAKZQZ010000001-JAKZQZ010000011
WGS_SCAFLD  NZ_JAKZQZ010000001-NZ_JAKZQZ010000011
//
LOCUS       NZ_JAKZQT010000000   2100116 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus agalactiae strain c-10, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAKZQT000000000
VERSION     NZ_JAKZQT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26533761
            Assembly: GCF_022585975.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus agalactiae
  ORGANISM  Streptococcus agalactiae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2100116)
  AUTHORS   Kuleshevich,E., Azarov,D., Goncharov,A., Gostev,V., Kireeva,A. and
            Suvorov,A.
  TITLE     Structure determination of pathogenicity islands of Streptococcus
            agalactiae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2100116)
  AUTHORS   Kuleshevich,E., Azarov,D., Goncharov,A., Gostev,V., Kireeva,A. and
            Suvorov,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-MAR-2022) Department of Molecular Microbiology,
            Federal State Budgetary Scientific Institution Institute of
            Experimental Medicine, Akademika Pavlova 12, St. Petersburg 197376,
            Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKZQT000000000.1.
            The Streptococcus agalactiae whole genome shotgun (WGS) project has
            the project accession NZ_JAKZQT000000000.  This version of the
            project (01) has the accession number NZ_JAKZQT010000000, and
            consists of sequences JAKZQT010000001-JAKZQT010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022585975.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:05:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,105
            CDSs (total)                      :: 2,055
            Genes (coding)                    :: 1,995
            CDSs (with protein)               :: 1,995
            Genes (RNA)                       :: 50
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 27 of 60
            Pseudo Genes (incomplete)         :: 35 of 60
            Pseudo Genes (internal stop)      :: 17 of 60
            Pseudo Genes (multiple problems)  :: 15 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100116
                     /organism="Streptococcus agalactiae"
                     /mol_type="genomic DNA"
                     /strain="c-10"
                     /host="Homo sapiens"
                     /db_xref="taxon:1311"
                     /geo_loc_name="Russia: Saint-Petersburg"
                     /collected_by="North-Western State Medical University
                     named after I. I. Mechnikov"
WGS         JAKZQT010000001-JAKZQT010000018
WGS_SCAFLD  NZ_JAKZQT010000001-NZ_JAKZQT010000018
//
LOCUS       NZ_JBBHGO010000000   2037128 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus agalactiae strain UNESP120, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBHGO000000000
VERSION     NZ_JBBHGO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40420845
            Assembly: GCF_037672685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus agalactiae
  ORGANISM  Streptococcus agalactiae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2037128)
  AUTHORS   Oliveira,L.M.A. and Pinto,T.C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) Microbiologia Medica, Universidade Federal
            do Rio de Janeiro, Av Carlos Chagas Filho 373, Centro de Ciencias
            da Saude, bloco I sala I02-028, Rio de Janeiro, Rio de Janeiro
            21941902, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBHGO000000000.1.
            The Streptococcus agalactiae whole genome shotgun (WGS) project has
            the project accession NZ_JBBHGO000000000.  This version of the
            project (01) has the accession number NZ_JBBHGO010000000, and
            consists of sequences JBBHGO010000001-JBBHGO010000025.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. SPAdes version 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037672685.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:06:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,054
            CDSs (total)                      :: 1,993
            Genes (coding)                    :: 1,934
            CDSs (with protein)               :: 1,934
            Genes (RNA)                       :: 61
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 33 of 59
            Pseudo Genes (incomplete)         :: 26 of 59
            Pseudo Genes (internal stop)      :: 10 of 59
            Pseudo Genes (multiple problems)  :: 8 of 59
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037128
                     /organism="Streptococcus agalactiae"
                     /mol_type="genomic DNA"
                     /strain="UNESP120"
                     /isolation_source="bovine milk"
                     /host="Bos taurus"
                     /db_xref="taxon:1311"
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="21.49 S 49.12 W"
                     /collection_date="2021"
WGS         JBBHGO010000001-JBBHGO010000025
WGS_SCAFLD  NZ_JBBHGO010000001-NZ_JBBHGO010000025
//
LOCUS       NZ_JBBLSW010000000   2513579 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain JONWP156, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBLSW000000000
VERSION     NZ_JBBLSW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39542715
            Assembly: GCF_037694085.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2513579)
  AUTHORS   Sonnert,N.D., Rosen,C.E., Ghazi,A.R., Franzosa,E.A.,
            Duncan-Lowey,B., Gonzalez-Hernandez,J.A., Huck,J.D., Yang,Y.,
            Dai,Y., Rice,T.A., Nguyen,M.T., Song,D., Cao,Y., Martin,A.L.,
            Bielecka,A.A., Fischer,S., Guan,C., Oh,J., Huttenhower,C.,
            Ring,A.M. and Palm,N.W.
  TITLE     A host-microbiota interactome reveals extensive transkingdom
            connectivity
  JOURNAL   Nature 628 (8006), 171-179 (2024)
   PUBMED   38509360
REFERENCE   2  (bases 1 to 2513579)
  AUTHORS   Sonnert,N.D., Yang,Y., Oh,J. and Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) Immunobiology, Yale University, 1 Gilbert
            St. Rm S540, New Haven, CT 06519, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBLSW000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JBBLSW000000000.  This version of the
            project (01) has the accession number NZ_JBBLSW010000000, and
            consists of sequences JBBLSW010000001-JBBLSW010000192.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037694085.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:07:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,612
            CDSs (total)                      :: 2,551
            Genes (coding)                    :: 2,445
            CDSs (with protein)               :: 2,445
            Genes (RNA)                       :: 61
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 16 of 106
            Pseudo Genes (incomplete)         :: 81 of 106
            Pseudo Genes (internal stop)      :: 15 of 106
            Pseudo Genes (multiple problems)  :: 6 of 106
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513579
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="JONWP156"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="USA: New Haven, CT"
                     /lat_lon="41.3083 N 72.9279 W"
                     /collection_date="2022-08"
WGS         JBBLSW010000001-JBBLSW010000192
WGS_SCAFLD  NZ_JBBLSW010000001-NZ_JBBLSW010000192
//
LOCUS       NZ_JBBLSI010000000   2514499 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus warneri strain JONWP119, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBLSI000000000
VERSION     NZ_JBBLSI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39542678
            Assembly: GCF_037694995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus warneri
  ORGANISM  Staphylococcus warneri
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2514499)
  AUTHORS   Sonnert,N.D., Rosen,C.E., Ghazi,A.R., Franzosa,E.A.,
            Duncan-Lowey,B., Gonzalez-Hernandez,J.A., Huck,J.D., Yang,Y.,
            Dai,Y., Rice,T.A., Nguyen,M.T., Song,D., Cao,Y., Martin,A.L.,
            Bielecka,A.A., Fischer,S., Guan,C., Oh,J., Huttenhower,C.,
            Ring,A.M. and Palm,N.W.
  TITLE     A host-microbiota interactome reveals extensive transkingdom
            connectivity
  JOURNAL   Nature 628 (8006), 171-179 (2024)
   PUBMED   38509360
REFERENCE   2  (bases 1 to 2514499)
  AUTHORS   Sonnert,N.D., Yang,Y., Oh,J. and Palm,N.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2024) Immunobiology, Yale University, 1 Gilbert
            St. Rm S540, New Haven, CT 06519, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBLSI000000000.1.
            The Staphylococcus warneri whole genome shotgun (WGS) project has
            the project accession NZ_JBBLSI000000000.  This version of the
            project (01) has the accession number NZ_JBBLSI010000000, and
            consists of sequences JBBLSI010000001-JBBLSI010000196.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2022
            Assembly Method        :: SPAdes v. 3.15.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037694995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:18:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,620
            CDSs (total)                      :: 2,557
            Genes (coding)                    :: 2,443
            CDSs (with protein)               :: 2,443
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 4 (16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 16 of 114
            Pseudo Genes (incomplete)         :: 89 of 114
            Pseudo Genes (internal stop)      :: 14 of 114
            Pseudo Genes (multiple problems)  :: 5 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514499
                     /organism="Staphylococcus warneri"
                     /mol_type="genomic DNA"
                     /strain="JONWP119"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1292"
                     /geo_loc_name="USA: New Haven, CT"
                     /lat_lon="41.3083 N 72.9279 W"
                     /collection_date="2022-08"
WGS         JBBLSI010000001-JBBLSI010000196
WGS_SCAFLD  NZ_JBBLSI010000001-NZ_JBBLSI010000196
//
LOCUS       NZ_JBBHGN010000000   2084434 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus agalactiae strain UNESP123, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBBHGN000000000
VERSION     NZ_JBBHGN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN40420846
            Assembly: GCF_037672565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus agalactiae
  ORGANISM  Streptococcus agalactiae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2084434)
  AUTHORS   Oliveira,L.M.A. and Pinto,T.C.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2024) Microbiologia Medica, Universidade Federal
            do Rio de Janeiro, Av Carlos Chagas Filho 373, Centro de Ciencias
            da Saude, bloco I sala I02-028, Rio de Janeiro, Rio de Janeiro
            21941902, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBBHGN000000000.1.
            The Streptococcus agalactiae whole genome shotgun (WGS) project has
            the project accession NZ_JBBHGN000000000.  This version of the
            project (01) has the accession number NZ_JBBHGN010000000, and
            consists of sequences JBBHGN010000001-JBBHGN010000018.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2021
            Assembly Method        :: SPAdes v. SPAdes version 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037672565.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:15:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,088
            CDSs (total)                      :: 2,044
            Genes (coding)                    :: 1,983
            CDSs (with protein)               :: 1,983
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 32 of 61
            Pseudo Genes (incomplete)         :: 29 of 61
            Pseudo Genes (internal stop)      :: 10 of 61
            Pseudo Genes (multiple problems)  :: 8 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084434
                     /organism="Streptococcus agalactiae"
                     /mol_type="genomic DNA"
                     /strain="UNESP123"
                     /isolation_source="bovine milk"
                     /host="Bos taurus"
                     /db_xref="taxon:1311"
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="21.49 S 49.12 W"
                     /collection_date="2021"
WGS         JBBHGN010000001-JBBHGN010000018
WGS_SCAFLD  NZ_JBBHGN010000001-NZ_JBBHGN010000018
//
LOCUS       NZ_JBMPXR010000000   2754548 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus saprophyticus strain 77, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPXR000000000
VERSION     NZ_JBMPXR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275433
            Assembly: GCF_049367255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus saprophyticus
  ORGANISM  Staphylococcus saprophyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2754548)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2754548)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPXR000000000.1.
            The Staphylococcus saprophyticus whole genome shotgun (WGS) project
            has the project accession NZ_JBMPXR000000000.  This version of the
            project (01) has the accession number NZ_JBMPXR010000000, and
            consists of sequences JBMPXR010000001-JBMPXR010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 81.46079999999999x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049367255.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:10:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,777
            CDSs (total)                      :: 2,694
            Genes (coding)                    :: 2,607
            CDSs (with protein)               :: 2,607
            Genes (RNA)                       :: 83
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 87
            CDSs (without protein)            :: 87
            Pseudo Genes (ambiguous residues) :: 0 of 87
            Pseudo Genes (frameshifted)       :: 37 of 87
            Pseudo Genes (incomplete)         :: 42 of 87
            Pseudo Genes (internal stop)      :: 20 of 87
            Pseudo Genes (multiple problems)  :: 12 of 87
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754548
                     /organism="Staphylococcus saprophyticus"
                     /mol_type="genomic DNA"
                     /strain="77"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:29385"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-04-06"
                     /collected_by="Kaiyue Zhang"
WGS         JBMPXR010000001-JBMPXR010000004
WGS_SCAFLD  NZ_JBMPXR010000001-NZ_JBMPXR010000004
//
LOCUS       NZ_JBMPXL010000000   2754424 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Staphylococcus saprophyticus strain 83, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMPXL000000000
VERSION     NZ_JBMPXL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275439
            Assembly: GCF_049367035.1
KEYWORDS    WGS; RefSeq.
SOURCE      Staphylococcus saprophyticus
  ORGANISM  Staphylococcus saprophyticus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (bases 1 to 2754424)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2754424)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPXL000000000.1.
            The Staphylococcus saprophyticus whole genome shotgun (WGS) project
            has the project accession NZ_JBMPXL000000000.  This version of the
            project (01) has the accession number NZ_JBMPXL010000000, and
            consists of sequences JBMPXL010000001-JBMPXL010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 52.424x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049367035.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:12:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,777
            CDSs (total)                      :: 2,694
            Genes (coding)                    :: 2,611
            CDSs (with protein)               :: 2,611
            Genes (RNA)                       :: 83
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 35 of 83
            Pseudo Genes (incomplete)         :: 39 of 83
            Pseudo Genes (internal stop)      :: 20 of 83
            Pseudo Genes (multiple problems)  :: 11 of 83
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754424
                     /organism="Staphylococcus saprophyticus"
                     /mol_type="genomic DNA"
                     /strain="83"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:29385"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-04-06"
                     /collected_by="Kaiyue Zhang"
WGS         JBMPXL010000001-JBMPXL010000004
WGS_SCAFLD  NZ_JBMPXL010000001-NZ_JBMPXL010000004
//
LOCUS       NZ_MNBZ01000000      2181636 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain MBF8-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MNBZ00000000
VERSION     NZ_MNBZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05928586
            Assembly: GCF_001884305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2181636)
  AUTHORS   Heng,N.C., Yeh,C.-W. and Malik,A.
  TITLE     Draft Genome Sequence of Weissella confusa MBF8-1, a Sucrase- and
            Bacteriocin-producing Strain Isolated from a Home-made Soy Product
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2181636)
  AUTHORS   Heng,N.C., Yeh,C.-W. and Malik,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2016) Oral Sciences, University of Otago, 310
            Great King Street, Dunedin 9016, New Zealand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MNBZ00000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_MNBZ00000000.  This version of the project
            (01) has the accession number NZ_MNBZ01000000, and consists of
            sequences MNBZ01000001-MNBZ01000044.
            Bacteria and source DNA available from Amarila Malik, Faculty of
            Pharmacy, Universitas Indonesia, Depok 16424, Indonesia.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2016
            Assembly Method        :: GS De Novo Assembler v. 2.3; MIRA v. 4.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 28.0x
            Sequencing Technology  :: 454
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001884305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:34:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,311
            CDSs (total)                      :: 2,206
            Genes (coding)                    :: 2,099
            CDSs (with protein)               :: 2,099
            Genes (RNA)                       :: 105
            rRNAs                             :: 8, 8, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 2 (5S, 23S)
            partial rRNAs                     :: 8, 4 (16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 52 of 107
            Pseudo Genes (incomplete)         :: 29 of 107
            Pseudo Genes (internal stop)      :: 42 of 107
            Pseudo Genes (multiple problems)  :: 16 of 107
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181636
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="MBF8-1"
                     /isolation_source="soy product"
                     /db_xref="taxon:1583"
                     /geo_loc_name="Indonesia: Tangerang"
                     /collection_date="2006-02"
                     /collected_by="Amarila Malik, Universitas Indonesia"
WGS         MNBZ01000001-MNBZ01000044
WGS_SCAFLD  NZ_MNBZ01000001-NZ_MNBZ01000044
//
LOCUS       NZ_JBMRFM010000000   4544135 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas maltophilia strain CASM88, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMRFM000000000
VERSION     NZ_JBMRFM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39200951
            Assembly: GCF_049385065.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas maltophilia
  ORGANISM  Stenotrophomonas maltophilia
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 4544135)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Genotypic characterization of Stenotrophomonas maltophilia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4544135)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-DEC-2023) Department of naturel sciences, Lebanese
            American university, Microbial Pathogenomics Lab, Blat, Byblos 36,
            Lebanon
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMRFM000000000.1.
            The Stenotrophomonas maltophilia whole genome shotgun (WGS) project
            has the project accession NZ_JBMRFM000000000.  This version of the
            project (01) has the accession number NZ_JBMRFM010000000, and
            consists of sequences JBMRFM010000001-JBMRFM010000096.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049385065.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:18:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,194
            CDSs (total)                      :: 4,109
            Genes (coding)                    :: 4,076
            CDSs (with protein)               :: 4,076
            Genes (RNA)                       :: 85
            rRNAs                             :: 5, 5, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 23S)
            partial rRNAs                     :: 2, 5, 1 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 9 of 33
            Pseudo Genes (incomplete)         :: 28 of 33
            Pseudo Genes (internal stop)      :: 4 of 33
            Pseudo Genes (multiple problems)  :: 5 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4544135
                     /organism="Stenotrophomonas maltophilia"
                     /mol_type="genomic DNA"
                     /strain="CASM88"
                     /isolation_source="BRONCHIAL"
                     /host="Homo sapiens"
                     /db_xref="taxon:40324"
                     /geo_loc_name="Lebanon"
                     /collection_date="2022-10-11"
WGS         JBMRFM010000001-JBMRFM010000096
WGS_SCAFLD  NZ_JBMRFM010000001-NZ_JBMRFM010000096
//
LOCUS       NZ_MVKQ01000000      5003990 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain VN-0101, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MVKQ00000000
VERSION     NZ_MVKQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03483416
            Assembly: GCF_002073095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5003990)
  AUTHORS   Blom,J., Eichhorn,C., Zimmermann,C., Auerbach,C., Goesmann,A.,
            Strauch,E. and Gunzer,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-SEP-2015) Bioinformatics and Systems Biology,
            Justus-Liebig-University Giessen, Heinrich Buff Ring 58, Giessen,
            Hessen 35392, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MVKQ00000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_MVKQ00000000.  This version of the project
            (01) has the accession number NZ_MVKQ01000000, and consists of
            sequences MVKQ01000001-MVKQ01000143.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 61.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002073095.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:47:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,498
            CDSs (total)                      :: 4,420
            Genes (coding)                    :: 4,360
            CDSs (with protein)               :: 4,360
            Genes (RNA)                       :: 78
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 16 of 60
            Pseudo Genes (incomplete)         :: 51 of 60
            Pseudo Genes (internal stop)      :: 5 of 60
            Pseudo Genes (multiple problems)  :: 12 of 60
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5003990
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="VN-0101"
                     /isolation_source="seawater"
                     /db_xref="taxon:672"
                     /geo_loc_name="Germany: Baltic Sea, Binz"
                     /collection_date="2010"
WGS         MVKQ01000001-MVKQ01000143
WGS_SCAFLD  NZ_MVKQ01000001-NZ_MVKQ01000143
//
LOCUS       NZ_JBMREY010000000   4672512 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas maltophilia strain CASM44, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMREY000000000
VERSION     NZ_JBMREY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39201045
            Assembly: GCF_049385665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas maltophilia
  ORGANISM  Stenotrophomonas maltophilia
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 4672512)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Genotypic characterization of Stenotrophomonas maltophilia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4672512)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-DEC-2023) Department of naturel sciences, Lebanese
            American university, Microbial Pathogenomics Lab, Blat, Byblos 36,
            Lebanon
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMREY000000000.1.
            The Stenotrophomonas maltophilia whole genome shotgun (WGS) project
            has the project accession NZ_JBMREY000000000.  This version of the
            project (01) has the accession number NZ_JBMREY010000000, and
            consists of sequences JBMREY010000001-JBMREY010000051.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049385665.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:22:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,365
            CDSs (total)                      :: 4,278
            Genes (coding)                    :: 4,244
            CDSs (with protein)               :: 4,244
            Genes (RNA)                       :: 87
            rRNAs                             :: 3, 5, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 5, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 10 of 34
            Pseudo Genes (incomplete)         :: 25 of 34
            Pseudo Genes (internal stop)      :: 5 of 34
            Pseudo Genes (multiple problems)  :: 4 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4672512
                     /organism="Stenotrophomonas maltophilia"
                     /mol_type="genomic DNA"
                     /strain="CASM44"
                     /isolation_source="bone"
                     /host="Homo sapiens"
                     /db_xref="taxon:40324"
                     /geo_loc_name="Lebanon"
                     /collection_date="2022-10-11"
WGS         JBMREY010000001-JBMREY010000051
WGS_SCAFLD  NZ_JBMREY010000001-NZ_JBMREY010000051
//
LOCUS       NZ_JBWDFK010000000   4098347 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain 2018V-1071, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWDFK000000000
VERSION     NZ_JBWDFK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56509109
            Assembly: GCF_056770545.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4098347)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Complete genome sequences of five Vibrio cholerae clinical strains
            isolated between 2017-2019
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4098347)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2026) Microbiology and Molecular Genetics,
            University of Pittsburgh, 450 Technology Drive, Pittsburgh, PA
            15219, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWDFK000000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_JBWDFK000000000.  This version of the project
            (01) has the accession number NZ_JBWDFK010000000, and consists of
            sequences JBWDFK010000001-JBWDFK010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-MAR-2026
            Assembly Method        :: Unicycler v. 0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 182.4x
            Sequencing Technology  :: Illumina NovaSeq + Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056770545.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:55:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,754
            CDSs (total)                      :: 3,625
            Genes (coding)                    :: 3,580
            CDSs (with protein)               :: 3,580
            Genes (RNA)                       :: 129
            rRNAs                             :: 10, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 9, 9 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 16 of 45
            Pseudo Genes (incomplete)         :: 27 of 45
            Pseudo Genes (internal stop)      :: 12 of 45
            Pseudo Genes (multiple problems)  :: 8 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098347
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="2018V-1071"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /geo_loc_name="India"
                     /collection_date="2018"
                     /collected_by="CDC"
WGS         JBWDFK010000001-JBWDFK010000002
WGS_SCAFLD  NZ_CM165269-NZ_CM165270
//
LOCUS       NZ_JBMRGD010000000   4611346 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stenotrophomonas maltophilia strain CASM80, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMRGD000000000
VERSION     NZ_JBMRGD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN39200971
            Assembly: GCF_049384445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stenotrophomonas maltophilia
  ORGANISM  Stenotrophomonas maltophilia
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Lysobacterales; Lysobacteraceae; Stenotrophomonas; Stenotrophomonas
            maltophilia group.
REFERENCE   1  (bases 1 to 4611346)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Genotypic characterization of Stenotrophomonas maltophilia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4611346)
  AUTHORS   Tokajian,S., Araj,G. and Adam,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-DEC-2023) Department of naturel sciences, Lebanese
            American university, Microbial Pathogenomics Lab, Blat, Byblos 36,
            Lebanon
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMRGD000000000.1.
            The Stenotrophomonas maltophilia whole genome shotgun (WGS) project
            has the project accession NZ_JBMRGD000000000.  This version of the
            project (01) has the accession number NZ_JBMRGD010000000, and
            consists of sequences JBMRGD010000001-JBMRGD010000108.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 30x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049384445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:32:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,278
            CDSs (total)                      :: 4,189
            Genes (coding)                    :: 4,153
            CDSs (with protein)               :: 4,153
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 23S)
            partial rRNAs                     :: 1, 5, 3 (5S, 16S, 23S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 9 of 36
            Pseudo Genes (incomplete)         :: 30 of 36
            Pseudo Genes (internal stop)      :: 5 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4611346
                     /organism="Stenotrophomonas maltophilia"
                     /mol_type="genomic DNA"
                     /strain="CASM80"
                     /isolation_source="DTA"
                     /host="Homo sapiens"
                     /db_xref="taxon:40324"
                     /geo_loc_name="Lebanon"
                     /collection_date="2022-10-11"
WGS         JBMRGD010000001-JBMRGD010000108
WGS_SCAFLD  NZ_JBMRGD010000001-NZ_JBMRGD010000108
//
LOCUS       NZ_JBWDFJ010000000   4273154 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain 2017V-1003, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWDFJ000000000
VERSION     NZ_JBWDFJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56509108
            Assembly: GCF_056770535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4273154)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Complete genome sequences of five Vibrio cholerae clinical strains
            isolated between 2017-2019
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4273154)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2026) Microbiology and Molecular Genetics,
            University of Pittsburgh, 450 Technology Drive, Pittsburgh, PA
            15219, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWDFJ000000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_JBWDFJ000000000.  This version of the project
            (01) has the accession number NZ_JBWDFJ010000000, and consists of
            sequences JBWDFJ010000001-JBWDFJ010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-MAR-2026
            Assembly Method        :: Unicycler v. 0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 164.3x
            Sequencing Technology  :: Illumina NovaSeq + Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056770535.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:24:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,963
            CDSs (total)                      :: 3,833
            Genes (coding)                    :: 3,777
            CDSs (with protein)               :: 3,777
            Genes (RNA)                       :: 130
            rRNAs                             :: 10, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 9, 9 (5S, 16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 56
            CDSs (without protein)            :: 56
            Pseudo Genes (ambiguous residues) :: 0 of 56
            Pseudo Genes (frameshifted)       :: 16 of 56
            Pseudo Genes (incomplete)         :: 37 of 56
            Pseudo Genes (internal stop)      :: 13 of 56
            Pseudo Genes (multiple problems)  :: 8 of 56
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4273154
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="2017V-1003"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /geo_loc_name="Kenya"
                     /collection_date="2017"
                     /collected_by="CDC"
WGS         JBWDFJ010000001-JBWDFJ010000003
WGS_SCAFLD  NZ_CM165267-NZ_CM165268
WGS_SCAFLD  NZ_JBWDFJ010000003
//
LOCUS       NZ_JBWDFM010000000   4100528 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain 2018V-1187, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWDFM000000000
VERSION     NZ_JBWDFM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56509111
            Assembly: GCF_056770485.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4100528)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Complete genome sequences of five Vibrio cholerae clinical strains
            isolated between 2017-2019
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4100528)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2026) Microbiology and Molecular Genetics,
            University of Pittsburgh, 450 Technology Drive, Pittsburgh, PA
            15219, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWDFM000000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_JBWDFM000000000.  This version of the project
            (01) has the accession number NZ_JBWDFM010000000, and consists of
            sequences JBWDFM010000001-JBWDFM010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-MAR-2026
            Assembly Method        :: Unicycler v. 0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 174.8x
            Sequencing Technology  :: Illumina NovaSeq + Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056770485.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:50:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,757
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,584
            CDSs (with protein)               :: 3,584
            Genes (RNA)                       :: 130
            rRNAs                             :: 10, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 9, 9 (5S, 16S, 23S)
            tRNAs                             :: 98
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 16 of 43
            Pseudo Genes (incomplete)         :: 25 of 43
            Pseudo Genes (internal stop)      :: 12 of 43
            Pseudo Genes (multiple problems)  :: 8 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100528
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="2018V-1187"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /geo_loc_name="Bangladesh"
                     /collection_date="2018"
                     /collected_by="CDC"
WGS         JBWDFM010000001-JBWDFM010000002
WGS_SCAFLD  NZ_CM165264-NZ_CM165265
//
LOCUS       NZ_JBVMWZ010000000   4047058 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain VB4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBVMWZ000000000
VERSION     NZ_JBVMWZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN55903878
            Assembly: GCF_056773295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4047058)
  AUTHORS   Kipkirui,E., Natasha,V., Kigen,C., Muturi,J., Kirera,R., Koech,M.,
            Kirui,M., Kipkemoi,N., Ndonye,J., Jerotich,S., Pow Sang,L.,
            Musila,L. and Odundo,E.
  TITLE     Genomic Analysis of Vibrio cholerae in Western Kenya (2015-2023)
            Reveals Persistence of Pandemic ST69 and Presence of the
            European-Associated ST8 Lineage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4047058)
  AUTHORS   Kipkirui,E., Natasha,V., Kigen,C., Muturi,J., Kirera,R., Koech,M.,
            Kirui,M., Kipkemoi,N., Ndonye,J., Jerotich,S., Pow Sang,L.,
            Musila,L. and Odundo,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2026) DEID, WRAIR-Africa, Ushma Building Along
            Temple Road, Kericho 254, Kenya
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBVMWZ000000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_JBVMWZ000000000.  This version of the project
            (01) has the accession number NZ_JBVMWZ010000000, and consists of
            sequences JBVMWZ010000001-JBVMWZ010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: unicycler v. 0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 123x
            Sequencing Technology  :: Illumina NextSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056773295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:56:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,711
            CDSs (total)                      :: 3,609
            Genes (coding)                    :: 3,559
            CDSs (with protein)               :: 3,559
            Genes (RNA)                       :: 102
            rRNAs                             :: 5, 5, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 4 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (5S, 16S)
            tRNAs                             :: 84
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 22 of 50
            Pseudo Genes (incomplete)         :: 27 of 50
            Pseudo Genes (internal stop)      :: 16 of 50
            Pseudo Genes (multiple problems)  :: 13 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4047058
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="VB4"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /geo_loc_name="Kenya: Kisumu"
                     /lat_lon="0.0917 S 34.7680 E"
                     /collection_date="2015"
                     /collected_by="WRAIR-Africa"
WGS         JBVMWZ010000001-JBVMWZ010000040
WGS_SCAFLD  NZ_JBVMWZ010000001-NZ_JBVMWZ010000040
//
LOCUS       NZ_JBVMXW010000000   4223829 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain VB32, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBVMXW000000000
VERSION     NZ_JBVMXW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN55903901
            Assembly: GCF_056772815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4223829)
  AUTHORS   Kipkirui,E., Natasha,V., Kigen,C., Muturi,J., Kirera,R., Koech,M.,
            Kirui,M., Kipkemoi,N., Ndonye,J., Jerotich,S., Pow Sang,L.,
            Musila,L. and Odundo,E.
  TITLE     Genomic Analysis of Vibrio cholerae in Western Kenya (2015-2023)
            Reveals Persistence of Pandemic ST69 and Presence of the
            European-Associated ST8 Lineage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4223829)
  AUTHORS   Kipkirui,E., Natasha,V., Kigen,C., Muturi,J., Kirera,R., Koech,M.,
            Kirui,M., Kipkemoi,N., Ndonye,J., Jerotich,S., Pow Sang,L.,
            Musila,L. and Odundo,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2026) DEID, WRAIR-Africa, Ushma Building Along
            Temple Road, Kericho 254, Kenya
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBVMXW000000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_JBVMXW000000000.  This version of the project
            (01) has the accession number NZ_JBVMXW010000000, and consists of
            sequences JBVMXW010000001-JBVMXW010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: unicycler v. 0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76x
            Sequencing Technology  :: Illumina NextSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056772815.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:45:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,910
            CDSs (total)                      :: 3,784
            Genes (coding)                    :: 3,736
            CDSs (with protein)               :: 3,736
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 18 of 48
            Pseudo Genes (incomplete)         :: 28 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 8 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4223829
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="VB32"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /geo_loc_name="Kenya: Kisumu"
                     /lat_lon="0.0917 S 34.7680 E"
                     /collection_date="2023"
                     /collected_by="WRAIR-Africa"
WGS         JBVMXW010000001-JBVMXW010000003
WGS_SCAFLD  NZ_JBVMXW010000001-NZ_JBVMXW010000003
//
LOCUS       NZ_JBWOEW010000000   2259666 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp44, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOEW000000000
VERSION     NZ_JBWOEW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715687
            Assembly: GCF_056780445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2259666)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOEW000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOEW000000000.  This version of the
            project (01) has the accession number NZ_JBWOEW010000000, and
            consists of sequences JBWOEW010000001-JBWOEW010000034.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:53:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,386
            CDSs (total)                      :: 2,311
            Genes (coding)                    :: 2,118
            CDSs (with protein)               :: 2,118
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 193
            CDSs (without protein)            :: 193
            Pseudo Genes (ambiguous residues) :: 0 of 193
            Pseudo Genes (frameshifted)       :: 91 of 193
            Pseudo Genes (incomplete)         :: 104 of 193
            Pseudo Genes (internal stop)      :: 50 of 193
            Pseudo Genes (multiple problems)  :: 41 of 193
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259666
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp44"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOEW010000001-JBWOEW010000034
WGS_SCAFLD  NZ_JBWOEW010000001-NZ_JBWOEW010000034
//
LOCUS       NZ_JBWDFL010000000   4100717 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain 2018V-1102, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWDFL000000000
VERSION     NZ_JBWDFL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56509110
            Assembly: GCF_056770575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4100717)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Complete genome sequences of five Vibrio cholerae clinical strains
            isolated between 2017-2019
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4100717)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2026) Microbiology and Molecular Genetics,
            University of Pittsburgh, 450 Technology Drive, Pittsburgh, PA
            15219, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWDFL000000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_JBWDFL000000000.  This version of the project
            (01) has the accession number NZ_JBWDFL010000000, and consists of
            sequences JBWDFL010000001-JBWDFL010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-MAR-2026
            Assembly Method        :: Unicycler v. 0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 303.7x
            Sequencing Technology  :: Illumina NovaSeq + Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056770575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 01:51:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,758
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,584
            CDSs (with protein)               :: 3,584
            Genes (RNA)                       :: 131
            rRNAs                             :: 10, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 9, 9 (5S, 16S, 23S)
            tRNAs                             :: 99
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 16 of 43
            Pseudo Genes (incomplete)         :: 25 of 43
            Pseudo Genes (internal stop)      :: 12 of 43
            Pseudo Genes (multiple problems)  :: 8 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4100717
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="2018V-1102"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /collection_date="2019"
                     /collected_by="CDC"
WGS         JBWDFL010000001-JBWDFL010000002
WGS_SCAFLD  NZ_CM165271-NZ_CM165272
//
LOCUS       NZ_JBWDFN010000000   4235011 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio cholerae strain 2019V-1234, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWDFN000000000
VERSION     NZ_JBWDFN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56509112
            Assembly: GCF_056770475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio cholerae
  ORGANISM  Vibrio cholerae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4235011)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Complete genome sequences of five Vibrio cholerae clinical strains
            isolated between 2017-2019
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4235011)
  AUTHORS   Bina,J.E. and Weng,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2026) Microbiology and Molecular Genetics,
            University of Pittsburgh, 450 Technology Drive, Pittsburgh, PA
            15219, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWDFN000000000.1.
            The Vibrio cholerae whole genome shotgun (WGS) project has the
            project accession NZ_JBWDFN000000000.  This version of the project
            (01) has the accession number NZ_JBWDFN010000000, and consists of
            sequences JBWDFN010000001-JBWDFN010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 12-MAR-2026
            Assembly Method        :: Unicycler v. 0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 357.4x
            Sequencing Technology  :: Illumina NovaSeq + Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056770475.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 02:28:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,922
            CDSs (total)                      :: 3,791
            Genes (coding)                    :: 3,740
            CDSs (with protein)               :: 3,740
            Genes (RNA)                       :: 131
            rRNAs                             :: 10, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 9, 9 (5S, 16S, 23S)
            tRNAs                             :: 99
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 19 of 51
            Pseudo Genes (incomplete)         :: 30 of 51
            Pseudo Genes (internal stop)      :: 12 of 51
            Pseudo Genes (multiple problems)  :: 8 of 51
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4235011
                     /organism="Vibrio cholerae"
                     /mol_type="genomic DNA"
                     /strain="2019V-1234"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:666"
                     /geo_loc_name="Yemen"
                     /collection_date="2019"
                     /collected_by="CDC"
WGS         JBWDFN010000001-JBWDFN010000003
WGS_SCAFLD  NZ_CM165262-NZ_CM165263
WGS_SCAFLD  NZ_JBWDFN010000003
//
LOCUS       NZ_AJZF02000000      5421816 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus ZF-90, whole genome shotgun sequencing project.
ACCESSION   NZ_AJZF00000000
VERSION     NZ_AJZF00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02470501
            Assembly: GCF_000272125.2
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus ZF-90
  ORGANISM  Vibrio splendidus ZF-90
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5421816)
  AUTHORS   Cordero,O.X., Wildschutte,H., Kirkup,B., Proehl,S., Ngo,L.,
            Hussain,F., Le Roux,F., Mincer,T. and Polz,M.F.
  TITLE     Ecological populations of bacteria act as socially cohesive units
            of antibiotic production and resistance
  JOURNAL   Science 337 (6099), 1228-1231 (2012)
   PUBMED   22955834
REFERENCE   2  (bases 1 to 5421816)
  AUTHORS   Hehemann,J.-H., Arevalo,P., Datta,M., Yu,X., Corzett,C.,
            Henschel,A., Preheim,S., Timberlake,S., Alm,E.J. and Polz,M.F.
  TITLE     Adaptive Radiation by Waves of Gene Transfer Leads to Fine-Scale
            Resource Partitioning in Marine Microbes
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 5421816)
  AUTHORS   Timberlake,S., Arevalo,P., Polz,M. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
REFERENCE   4  (bases 1 to 5421816)
  AUTHORS   Cordero,O.X. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAY-2012) Parsons Laboratory, Civil and Environmental
            Engineering, Massachusetts Institute of Technology, 77
            Massachusetts Avenue, Cambridge, MA 02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AJZF00000000.2.
            
            On Sep 19, 2016 this sequence version replaced NZ_AJZF00000000.1.
            The Vibrio splendidus ZF-90 whole genome shotgun (WGS) project has
            the project accession NZ_AJZF00000000.  This version of the project
            (02) has the accession number NZ_AJZF02000000, and consists of
            sequences AJZF02000001-AJZF02000183.
            Source DNA available from Martin Polz, 77 Massachusetts Ave.,
            Cambridge, MA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.1.04; Maq v. 0.7.1; minimus v.
                                     2.0
            Genome Coverage       :: 57x
            Sequencing Technology :: Illumina GAII; Illumina GI
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000272125.2-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:46:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,799
            CDSs (total)                      :: 4,774
            Genes (coding)                    :: 4,686
            CDSs (with protein)               :: 4,686
            Genes (RNA)                       :: 25
            rRNAs                             :: 3, 3 (16S, 23S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 15
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 25 of 88
            Pseudo Genes (incomplete)         :: 64 of 88
            Pseudo Genes (internal stop)      :: 4 of 88
            Pseudo Genes (multiple problems)  :: 4 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5421816
                     /organism="Vibrio splendidus ZF-90"
                     /mol_type="genomic DNA"
                     /strain="ZF-90"
                     /isolation_source="filtered seawater (64um filter)"
                     /db_xref="taxon:617147"
                     /geo_loc_name="USA: Massachusetts"
                     /collection_date="2006-09"
WGS         AJZF02000001-AJZF02000183
WGS_SCAFLD  NZ_AJZF02000001-NZ_AJZF02000183
//
LOCUS       NZ_JBWOEY010000000   2161638 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp42, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOEY000000000
VERSION     NZ_JBWOEY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715685
            Assembly: GCF_056780465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2161638)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOEY000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOEY000000000.  This version of the
            project (01) has the accession number NZ_JBWOEY010000000, and
            consists of sequences JBWOEY010000001-JBWOEY010000033.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780465.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:53:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,234
            CDSs (total)                      :: 2,167
            Genes (coding)                    :: 1,999
            CDSs (with protein)               :: 1,999
            Genes (RNA)                       :: 67
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 168
            CDSs (without protein)            :: 168
            Pseudo Genes (ambiguous residues) :: 0 of 168
            Pseudo Genes (frameshifted)       :: 75 of 168
            Pseudo Genes (incomplete)         :: 95 of 168
            Pseudo Genes (internal stop)      :: 50 of 168
            Pseudo Genes (multiple problems)  :: 41 of 168
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161638
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp42"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOEY010000001-JBWOEY010000033
WGS_SCAFLD  NZ_JBWOEY010000001-NZ_JBWOEY010000033
//
LOCUS       NZ_JBWOEU010000000   2053847 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp46, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOEU000000000
VERSION     NZ_JBWOEU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715689
            Assembly: GCF_056780385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2053847)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOEU000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOEU000000000.  This version of the
            project (01) has the accession number NZ_JBWOEU010000000, and
            consists of sequences JBWOEU010000001-JBWOEU010000030.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780385.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:56:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,165
            CDSs (total)                      :: 2,092
            Genes (coding)                    :: 1,908
            CDSs (with protein)               :: 1,908
            Genes (RNA)                       :: 73
            rRNAs                             :: 4, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 89 of 184
            Pseudo Genes (incomplete)         :: 97 of 184
            Pseudo Genes (internal stop)      :: 50 of 184
            Pseudo Genes (multiple problems)  :: 44 of 184
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053847
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp46"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOEU010000001-JBWOEU010000030
WGS_SCAFLD  NZ_JBWOEU010000001-NZ_JBWOEU010000030
//
LOCUS       NZ_JATB01000000      1893310 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus uberis 6736, whole genome shotgun sequencing project.
ACCESSION   NZ_JATB00000000
VERSION     NZ_JATB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02570400
            Assembly: GCF_000975445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus uberis 6736
  ORGANISM  Streptococcus uberis 6736
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1893310)
  AUTHORS   Hossain,M., Egan,S.A., Coffey,T., Ward,P.N., Wilson,R., Leigh,J.A.
            and Emes,R.D.
  TITLE     Virulence related sequences; insights provided by comparative
            genomics of Streptococcus uberis of differing virulence
  JOURNAL   BMC Genomics 16 (1), 334 (2015)
   PUBMED   25898893
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893310)
  AUTHORS   Hossain,M., Wilson,R., Egan,S.A., Leigh,J.A. and Emes,R.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2014) School of Veterinary Medicine and Science,
            University of Nottingham, Sutton Bonington Campus, College Road,
            Loughborough, Leicestershire LE12 5RD, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JATB00000000.1.
            The Streptococcus uberis 6736 whole genome shotgun (WGS) project
            has the project accession NZ_JATB00000000.  This version of the
            project (01) has the accession number NZ_JATB01000000, and consists
            of sequences JATB01000001-JATB01000027.
            Bacteria and source DNA available from James A. Leigh, School of
            Veterinary Medicine and Science, University of Nottingham, Sutton
            Bonington Campus, College Road, Loughborough, Leicestershire LE12
            5RD, United Kingdom.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.2.10
            Genome Coverage       :: 10.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000975445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:25:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,945
            CDSs (total)                      :: 1,885
            Genes (coding)                    :: 1,851
            CDSs (with protein)               :: 1,851
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 13 of 34
            Pseudo Genes (incomplete)         :: 24 of 34
            Pseudo Genes (internal stop)      :: 5 of 34
            Pseudo Genes (multiple problems)  :: 7 of 34
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893310
                     /organism="Streptococcus uberis 6736"
                     /mol_type="genomic DNA"
                     /strain="6736"
                     /isolation_source="milk from an udder"
                     /host="Cow"
                     /db_xref="taxon:1450192"
WGS         JATB01000001-JATB01000027
WGS_SCAFLD  NZ_JATB01000001-NZ_JATB01000027
//
LOCUS       NZ_JBWOEX010000000   2135163 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp43, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOEX000000000
VERSION     NZ_JBWOEX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715686
            Assembly: GCF_056780425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2135163)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOEX000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOEX000000000.  This version of the
            project (01) has the accession number NZ_JBWOEX010000000, and
            consists of sequences JBWOEX010000001-JBWOEX010000041.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:55:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,211
            CDSs (total)                      :: 2,136
            Genes (coding)                    :: 1,969
            CDSs (with protein)               :: 1,969
            Genes (RNA)                       :: 75
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 0 of 167
            Pseudo Genes (frameshifted)       :: 77 of 167
            Pseudo Genes (incomplete)         :: 93 of 167
            Pseudo Genes (internal stop)      :: 52 of 167
            Pseudo Genes (multiple problems)  :: 43 of 167
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135163
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp43"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOEX010000001-JBWOEX010000041
WGS_SCAFLD  NZ_JBWOEX010000001-NZ_JBWOEX010000041
//
LOCUS       NZ_MDAO01000000      5614299 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus strain 10N.222.54.F7, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MDAO00000000
VERSION     NZ_MDAO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05418023
            Assembly: GCF_002875495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5614299)
  AUTHORS   Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M.,
            Chang,W.K., VanInsberghe,D., Elsherbini,J., Sharma,R.S.,
            Cutler,M.B., Kelly,L. and Polz,M.F.
  TITLE     A major lineage of non-tailed dsDNA viruses as unrecognized killers
            of marine bacteria
  JOURNAL   Nature 554 (7690), 118-122 (2018)
   PUBMED   29364876
REFERENCE   2  (bases 1 to 5614299)
  AUTHORS   Kauffman,K., Arevalo,P. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MDAO00000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_MDAO00000000.  This version of the project
            (01) has the accession number NZ_MDAO01000000, and consists of
            sequences MDAO01000001-MDAO01000099.
            Source DNA available from Martin Polz, 77 Massachusetts Ave.,
            Cambridge, MA.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC GWB v. 8.0
            Genome Coverage       :: 191x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002875495.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:13:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,045
            CDSs (total)                      :: 4,938
            Genes (coding)                    :: 4,848
            CDSs (with protein)               :: 4,848
            Genes (RNA)                       :: 107
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 43 of 90
            Pseudo Genes (incomplete)         :: 52 of 90
            Pseudo Genes (internal stop)      :: 20 of 90
            Pseudo Genes (multiple problems)  :: 21 of 90
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5614299
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /strain="10N.222.54.F7"
                     /isolation_source="Filtered Seawater, >63 micron fraction"
                     /db_xref="taxon:29497"
                     /geo_loc_name="USA: Massachusetts, Nahant, Canoe Cove"
                     /collection_date="2010-08-10"
WGS         MDAO01000001-MDAO01000099
WGS_SCAFLD  NZ_MDAO01000001-NZ_MDAO01000099
//
LOCUS       NZ_JBWOEV010000000   2254991 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus pneumoniae strain sp45, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBWOEV000000000
VERSION     NZ_JBWOEV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN56715688
            Assembly: GCF_056780405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus pneumoniae
  ORGANISM  Streptococcus pneumoniae
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 2254991)
  AUTHORS   Xing,Y.Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2026) School of Basic Medical Sciences and
            Forensic Medicine, Hangzhou Medical College, Yikang street,
            Hangzhou, Zhejiang 310000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWOEV000000000.1.
            The Streptococcus pneumoniae whole genome shotgun (WGS) project has
            the project accession NZ_JBWOEV000000000.  This version of the
            project (01) has the accession number NZ_JBWOEV010000000, and
            consists of sequences JBWOEV010000001-JBWOEV010000064.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04; SPAdes v. 2012; ABySS
                                      v. 2009
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056780405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:01:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,444
            CDSs (total)                      :: 2,379
            Genes (coding)                    :: 2,175
            CDSs (with protein)               :: 2,175
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 204
            CDSs (without protein)            :: 204
            Pseudo Genes (ambiguous residues) :: 0 of 204
            Pseudo Genes (frameshifted)       :: 90 of 204
            Pseudo Genes (incomplete)         :: 118 of 204
            Pseudo Genes (internal stop)      :: 52 of 204
            Pseudo Genes (multiple problems)  :: 47 of 204
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254991
                     /organism="Streptococcus pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="sp45"
                     /host="Homo sapiens"
                     /db_xref="taxon:1313"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021"
WGS         JBWOEV010000001-JBWOEV010000064
WGS_SCAFLD  NZ_JBWOEV010000001-NZ_JBWOEV010000064
//
LOCUS       NZ_MVKS01000000      4910487 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain VN-0108, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MVKS00000000
VERSION     NZ_MVKS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03486856
            Assembly: GCF_002073135.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4910487)
  AUTHORS   Blom,J., Eichhorn,C., Zimmermann,C., Auerbach,C., Goesmann,A.,
            Strauch,E. and Gunzer,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-SEP-2015) Bioinformatics and Systems Biology,
            Justus-Liebig-University Giessen, Heinrich Buff Ring 58, Giessen,
            Hessen 35392, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MVKS00000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_MVKS00000000.  This version of the project
            (01) has the accession number NZ_MVKS01000000, and consists of
            sequences MVKS01000001-MVKS01000137.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.8
            Genome Coverage       :: 65.0x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002073135.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:55:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,396
            CDSs (total)                      :: 4,304
            Genes (coding)                    :: 4,247
            CDSs (with protein)               :: 4,247
            Genes (RNA)                       :: 92
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 21 of 57
            Pseudo Genes (incomplete)         :: 42 of 57
            Pseudo Genes (internal stop)      :: 7 of 57
            Pseudo Genes (multiple problems)  :: 11 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4910487
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="VN-0108"
                     /host="Homo sapiens"
                     /db_xref="taxon:672"
                     /geo_loc_name="Germany: Baltic Sea, Binz"
                     /collection_date="2010"
WGS         MVKS01000001-MVKS01000137
WGS_SCAFLD  NZ_MVKS01000001-NZ_MVKS01000137
//
LOCUS       NZ_MAKC01000000      5231459 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio diabolicus strain FF273, whole genome shotgun sequencing
            project.
ACCESSION   NZ_MAKC00000000
VERSION     NZ_MAKC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04867927
            Assembly: GCF_001691185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio diabolicus
  ORGANISM  Vibrio diabolicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio; Vibrio diabolicus subgroup.
REFERENCE   1  (bases 1 to 5231459)
  AUTHORS   Hehemann,J.-H., Arevalo,P., Datta,M.S. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MAKC00000000.1.
            The Vibrio diabolicus whole genome shotgun (WGS) project has the
            project accession NZ_MAKC00000000.  This version of the project
            (01) has the accession number NZ_MAKC01000000, and consists of
            sequences MAKC01000001-MAKC01000179.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 64.0x
            Sequencing Technology  :: Illumina GAII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001691185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:49:14
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,749
            CDSs (total)                      :: 4,721
            Genes (coding)                    :: 4,654
            CDSs (with protein)               :: 4,654
            Genes (RNA)                       :: 28
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 19
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 67
            CDSs (without protein)            :: 67
            Pseudo Genes (ambiguous residues) :: 0 of 67
            Pseudo Genes (frameshifted)       :: 24 of 67
            Pseudo Genes (incomplete)         :: 47 of 67
            Pseudo Genes (internal stop)      :: 8 of 67
            Pseudo Genes (multiple problems)  :: 8 of 67
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5231459
                     /organism="Vibrio diabolicus"
                     /mol_type="genomic DNA"
                     /strain="FF273"
                     /isolation_source="Filtered Seawater, 0.2-1 micron
                     fraction"
                     /db_xref="taxon:50719"
                     /geo_loc_name="USA: Massachusetts"
                     /collection_date="2006-09-06"
WGS         MAKC01000001-MAKC01000179
WGS_SCAFLD  NZ_MAKC01000001-NZ_MAKC01000179
//
LOCUS       NZ_PDGK01000000      5054780 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio vulnificus strain A14, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PDGK00000000
VERSION     NZ_PDGK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07739074
            Assembly: GCF_002903555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio vulnificus
  ORGANISM  Vibrio vulnificus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5054780)
  AUTHORS   Roig,F.J., Gonzalez-Candelas,F., Sanjuan,E., Fouz,B., Feil,E.J.,
            Llorens,C., Baker-Austin,C., Oliver,J.D., Danin-Poleg,Y.,
            Gibas,C.J., Kashi,Y., Gulig,P.A., Morrison,S.S. and Amaro,C.
  TITLE     Phylogeny of Vibrio vulnificus from the Analysis of the
            Core-Genome: Implications for Intra-Species Taxonomy
  JOURNAL   Front Microbiol 8, 2613 (2018)
   PUBMED   29358930
  REMARK    Erratum:[Front Microbiol. 2019 Aug 21;10:1904. doi:
            10.3389/fmicb.2019.01904. PMID: 31481942]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5054780)
  AUTHORS   Roig,F.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-OCT-2017) Microbiology and Ecology, University of
            Valencia, Dr. moliner, 50, Burjassot, Valencia 46100, Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PDGK00000000.1.
            The Vibrio vulnificus whole genome shotgun (WGS) project has the
            project accession NZ_PDGK00000000.  This version of the project
            (01) has the accession number NZ_PDGK01000000, and consists of
            sequences PDGK01000001-PDGK01000120.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 290x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002903555.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:15:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,567
            CDSs (total)                      :: 4,496
            Genes (coding)                    :: 4,443
            CDSs (with protein)               :: 4,443
            Genes (RNA)                       :: 71
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 16 of 53
            Pseudo Genes (incomplete)         :: 37 of 53
            Pseudo Genes (internal stop)      :: 17 of 53
            Pseudo Genes (multiple problems)  :: 16 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5054780
                     /organism="Vibrio vulnificus"
                     /mol_type="genomic DNA"
                     /strain="A14"
                     /serovar="A"
                     /host="eel"
                     /db_xref="taxon:672"
                     /geo_loc_name="Spain"
                     /collection_date="2002"
                     /biotype="2"
WGS         PDGK01000001-PDGK01000120
WGS_SCAFLD  NZ_PDGK01000001-NZ_PDGK01000120
//
LOCUS       NZ_PIFT01000000      5279504 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus strain 5S_210, whole genome shotgun sequencing
            project.
ACCESSION   NZ_PIFT00000000
VERSION     NZ_PIFT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08099553
            Assembly: GCF_003050445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5279504)
  AUTHORS   Bruto,M., Labreuche,Y., James,A., Piel,D., Chenivesse,S.,
            Petton,B., Polz,M.F. and Le Roux,F.
  TITLE     Population delineation of vibrios coincides with oyster
            pathogenicity
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5279504)
  AUTHORS   Bruto,M., Labreuche,Y., James,A., Piel,D., Chenivesse,S.,
            Petton,B., Polz,M.F. and Le Roux,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-NOV-2017) Laboratory of Integrative Biology of Marine
            Models, Station Biologique Roscoff (CNRS/UMPC), Place Georges
            Teissier, Roscoff 29680, France
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            PIFT00000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_PIFT00000000.  This version of the project
            (01) has the accession number NZ_PIFT01000000, and consists of
            sequences PIFT01000001-PIFT01000039.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.2.10
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 820x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003050445.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:27:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,624
            CDSs (total)                      :: 4,570
            Genes (coding)                    :: 4,533
            CDSs (with protein)               :: 4,533
            Genes (RNA)                       :: 54
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 1 of 37
            Pseudo Genes (frameshifted)       :: 15 of 37
            Pseudo Genes (incomplete)         :: 23 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 8 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5279504
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /strain="5S_210"
                     /isolation_source="Filtered seawater (5uM filter)"
                     /db_xref="taxon:29497"
                     /geo_loc_name="USA: Plum Island, MA"
                     /collection_date="2006-04-28"
WGS         PIFT01000001-PIFT01000039
WGS_SCAFLD  NZ_PIFT01000001-NZ_PIFT01000039
//
LOCUS       NZ_MCTU01000000      5624613 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus strain 10N.286.52.C6, whole genome shotgun
            sequencing project.
ACCESSION   NZ_MCTU00000000
VERSION     NZ_MCTU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05418199
            Assembly: GCF_002873695.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5624613)
  AUTHORS   Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M.,
            Chang,W.K., VanInsberghe,D., Elsherbini,J., Sharma,R.S.,
            Cutler,M.B., Kelly,L. and Polz,M.F.
  TITLE     A major lineage of non-tailed dsDNA viruses as unrecognized killers
            of marine bacteria
  JOURNAL   Nature 554 (7690), 118-122 (2018)
   PUBMED   29364876
REFERENCE   2  (bases 1 to 5624613)
  AUTHORS   Kauffman,K., Arevalo,P. and Polz,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUL-2016) Civil and Environmental Engineering,
            Massachusetts Institute of Technology, 77 Massachusetts Avenue,
            Cambridge, MA 02139, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MCTU00000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_MCTU00000000.  This version of the project
            (01) has the accession number NZ_MCTU01000000, and consists of
            sequences MCTU01000001-MCTU01000143.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Source DNA available from Martin Polz, 77 Massachusetts Ave.,
            Cambridge, MA.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: CLC GWB v. 8.0
            Genome Coverage       :: 35x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002873695.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:12:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,032
            CDSs (total)                      :: 4,940
            Genes (coding)                    :: 4,849
            CDSs (with protein)               :: 4,849
            Genes (RNA)                       :: 92
            rRNAs                             :: 3, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 4, 1 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 38 of 91
            Pseudo Genes (incomplete)         :: 52 of 91
            Pseudo Genes (internal stop)      :: 21 of 91
            Pseudo Genes (multiple problems)  :: 18 of 91
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5624613
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /strain="10N.286.52.C6"
                     /isolation_source="Filtered Seawater, 5-63 micron
                     fraction"
                     /db_xref="taxon:29497"
                     /geo_loc_name="USA: Massachusetts, Nahant, Canoe Cove"
                     /collection_date="2010-10-13"
WGS         MCTU01000001-MCTU01000143
WGS_SCAFLD  NZ_MCTU01000001-NZ_MCTU01000143
//
LOCUS       NZ_SMAT01000000      5244856 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 16BF1_28, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMAT00000000
VERSION     NZ_SMAT00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362060
            Assembly: GCF_004342955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5244856)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5244856)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMAT00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMAT00000000.  This version of the project
            (01) has the accession number NZ_SMAT01000000, and consists of
            sequences SMAT01000001-SMAT01000028.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 286.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:49:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,700
            CDSs (total)                      :: 4,602
            Genes (coding)                    :: 4,574
            CDSs (with protein)               :: 4,574
            Genes (RNA)                       :: 98
            rRNAs                             :: 5, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 1, 2 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 14 of 28
            Pseudo Genes (incomplete)         :: 17 of 28
            Pseudo Genes (internal stop)      :: 5 of 28
            Pseudo Genes (multiple problems)  :: 8 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5244856
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="16BF1_28"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SMAT01000001-SMAT01000028
WGS_SCAFLD  NZ_SMAT01000001-NZ_SMAT01000028
//
LOCUS       NZ_NYLK01000000      4606626 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain 42053, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NYLK00000000
VERSION     NZ_NYLK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07722880
            Assembly: GCF_009667885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4606626)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X., Yang,R., Schmid,B.V., Guo,C.,
            Tian,H., Wang,M., Xu,B. and Stenseth,N.C.
  TITLE     Variable transmissibility of Yersinia pestis in response to
            changing environmental conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4606626)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X. and Yang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2017) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            NO.20 East Street Fengtai District, Beijing 100071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NYLK00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_NYLK00000000.  This version of the project
            (01) has the accession number NZ_NYLK01000000, and consists of
            sequences NYLK01000001-NYLK01000231.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Genome Coverage       :: 97.6x
            Sequencing Technology :: Illumina Hiseq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009667885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:00:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,205
            CDSs (total)                      :: 4,123
            Genes (coding)                    :: 3,942
            CDSs (with protein)               :: 3,942
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 2, 4 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 181
            CDSs (without protein)            :: 181
            Pseudo Genes (ambiguous residues) :: 0 of 181
            Pseudo Genes (frameshifted)       :: 89 of 181
            Pseudo Genes (incomplete)         :: 104 of 181
            Pseudo Genes (internal stop)      :: 18 of 181
            Pseudo Genes (multiple problems)  :: 26 of 181
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4606626
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="42053"
                     /isolation_source="Anoplura"
                     /db_xref="taxon:632"
                     /geo_loc_name="China: Xinjiang Guertu"
                     /collection_date="1986-07-13"
WGS         NYLK01000001-NYLK01000231
WGS_SCAFLD  NZ_NYLK01000001-NZ_NYLK01000231
//
LOCUS       NZ_JAANXZ010000000   2884409 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sutterella wadsworthensis strain 809h, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAANXZ000000000
VERSION     NZ_JAANXZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14213962
            Assembly: GCF_011320425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sutterella wadsworthensis
  ORGANISM  Sutterella wadsworthensis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Sutterellaceae; Sutterella.
REFERENCE   1  (bases 1 to 2884409)
  AUTHORS   Fresia,P., Berthenet,E., Diaz-Viraque,F., Forster,S.C., Ferres,I.,
            Buissoniere,A., Ducournau,A., Bessede,E., Megraud,F., Lehours,P.
            and Iraola,G.
  TITLE     Clinical lineages of Sutterella wadsworthensis reside in the
            intestinal microbiota of healthy humans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2884409)
  AUTHORS   Fresia,P., Berthenet,E., Diaz-Viraque,F., Forster,S.C., Ferres,I.,
            Buissoniere,A., Ducournau,A., Bessede,E., Megraud,F., Lehours,P.
            and Iraola,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2020) Microbial Genomics Laboratory, Institut
            Pasteur Montevideo, Mataojo 2020, Montevideo, Montevideo 11400,
            Uruguay
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANXZ000000000.1.
            The Sutterella wadsworthensis whole genome shotgun (WGS) project
            has the project accession NZ_JAANXZ000000000.  This version of the
            project (01) has the accession number NZ_JAANXZ010000000, and
            consists of sequences JAANXZ010000001-JAANXZ010000085.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 74x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011320425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:58:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,449
            CDSs (total)                      :: 2,383
            Genes (coding)                    :: 2,346
            CDSs (with protein)               :: 2,346
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 6 of 37
            Pseudo Genes (incomplete)         :: 30 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 5 of 37
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2884409
                     /organism="Sutterella wadsworthensis"
                     /mol_type="genomic DNA"
                     /strain="809h"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:40545"
                     /geo_loc_name="France: Bordeaux"
                     /lat_lon="44.50 N 0.34 E"
                     /collection_date="2016-09-16"
                     /collected_by="Philippe Lehours"
WGS         JAANXZ010000001-JAANXZ010000085
WGS_SCAFLD  NZ_JAANXZ010000001-NZ_JAANXZ010000085
//
LOCUS       NZ_NYJX01000000      4603342 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain 42113, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NYJX00000000
VERSION     NZ_NYJX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07722919
            Assembly: GCF_009669635.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4603342)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X., Yang,R., Schmid,B.V., Guo,C.,
            Tian,H., Wang,M., Xu,B. and Stenseth,N.C.
  TITLE     Variable transmissibility of Yersinia pestis in response to
            changing environmental conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4603342)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X. and Yang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2017) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            NO.20 East Street Fengtai District, Beijing 100071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NYJX00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_NYJX00000000.  This version of the project
            (01) has the accession number NZ_NYJX01000000, and consists of
            sequences NYJX01000001-NYJX01000237.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Genome Coverage       :: 97.8x
            Sequencing Technology :: Illumina Hiseq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009669635.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:04:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,212
            CDSs (total)                      :: 4,128
            Genes (coding)                    :: 3,952
            CDSs (with protein)               :: 3,952
            Genes (RNA)                       :: 84
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 176
            CDSs (without protein)            :: 176
            Pseudo Genes (ambiguous residues) :: 0 of 176
            Pseudo Genes (frameshifted)       :: 84 of 176
            Pseudo Genes (incomplete)         :: 104 of 176
            Pseudo Genes (internal stop)      :: 18 of 176
            Pseudo Genes (multiple problems)  :: 26 of 176
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603342
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="42113"
                     /isolation_source="Citellus undulatus"
                     /db_xref="taxon:632"
                     /geo_loc_name="China: Xinjiang Guertu"
                     /collection_date="2003-08-07"
WGS         NYJX01000001-NYJX01000237
WGS_SCAFLD  NZ_NYJX01000001-NZ_NYJX01000237
//
LOCUS       NZ_JAANXP010000000   2943414 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Sutterella wadsworthensis strain 3358, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAANXP000000000
VERSION     NZ_JAANXP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14213975
            Assembly: GCF_011320145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Sutterella wadsworthensis
  ORGANISM  Sutterella wadsworthensis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Sutterellaceae; Sutterella.
REFERENCE   1  (bases 1 to 2943414)
  AUTHORS   Fresia,P., Berthenet,E., Diaz-Viraque,F., Forster,S.C., Ferres,I.,
            Buissoniere,A., Ducournau,A., Bessede,E., Megraud,F., Lehours,P.
            and Iraola,G.
  TITLE     Clinical lineages of Sutterella wadsworthensis reside in the
            intestinal microbiota of healthy humans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2943414)
  AUTHORS   Fresia,P., Berthenet,E., Diaz-Viraque,F., Forster,S.C., Ferres,I.,
            Buissoniere,A., Ducournau,A., Bessede,E., Megraud,F., Lehours,P.
            and Iraola,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2020) Microbial Genomics Laboratory, Institut
            Pasteur Montevideo, Mataojo 2020, Montevideo, Montevideo 11400,
            Uruguay
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANXP000000000.1.
            The Sutterella wadsworthensis whole genome shotgun (WGS) project
            has the project accession NZ_JAANXP000000000.  This version of the
            project (01) has the accession number NZ_JAANXP010000000, and
            consists of sequences JAANXP010000001-JAANXP010000062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011320145.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:56:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,496
            CDSs (total)                      :: 2,431
            Genes (coding)                    :: 2,400
            CDSs (with protein)               :: 2,400
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 4 of 31
            Pseudo Genes (incomplete)         :: 28 of 31
            Pseudo Genes (internal stop)      :: 1 of 31
            Pseudo Genes (multiple problems)  :: 2 of 31
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2943414
                     /organism="Sutterella wadsworthensis"
                     /mol_type="genomic DNA"
                     /strain="3358"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:40545"
                     /geo_loc_name="France: Bordeaux"
                     /lat_lon="44.50 N 0.34 E"
                     /collection_date="2016-12-06"
                     /collected_by="Philippe Lehours"
WGS         JAANXP010000001-JAANXP010000062
WGS_SCAFLD  NZ_JAANXP010000001-NZ_JAANXP010000062
//
LOCUS       NZ_NYLB01000000      4604109 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain 42062, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NYLB00000000
VERSION     NZ_NYLB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07722889
            Assembly: GCF_009670235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4604109)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X., Yang,R., Schmid,B.V., Guo,C.,
            Tian,H., Wang,M., Xu,B. and Stenseth,N.C.
  TITLE     Variable transmissibility of Yersinia pestis in response to
            changing environmental conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4604109)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X. and Yang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2017) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            NO.20 East Street Fengtai District, Beijing 100071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NYLB00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_NYLB00000000.  This version of the project
            (01) has the accession number NZ_NYLB01000000, and consists of
            sequences NYLB01000001-NYLB01000246.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Genome Coverage       :: 97.7x
            Sequencing Technology :: Illumina Hiseq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009670235.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:03:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,207
            CDSs (total)                      :: 4,127
            Genes (coding)                    :: 3,947
            CDSs (with protein)               :: 3,947
            Genes (RNA)                       :: 80
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 86 of 180
            Pseudo Genes (incomplete)         :: 106 of 180
            Pseudo Genes (internal stop)      :: 18 of 180
            Pseudo Genes (multiple problems)  :: 26 of 180
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4604109
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="42062"
                     /isolation_source="Citellus undulatus"
                     /db_xref="taxon:632"
                     /geo_loc_name="China: Xinjiang Guertu"
                     /collection_date="1987-07-21"
WGS         NYLB01000001-NYLB01000246
WGS_SCAFLD  NZ_NYLB01000001-NZ_NYLB01000246
//
LOCUS       NZ_SLWI01000000      5260432 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain 38_O_207, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLWI00000000
VERSION     NZ_SLWI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362073
            Assembly: GCF_004340345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5260432)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5260432)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLWI00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SLWI00000000.  This version of the project
            (01) has the accession number NZ_SLWI01000000, and consists of
            sequences SLWI01000001-SLWI01000022.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 285.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004340345.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:56:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,695
            CDSs (total)                      :: 4,592
            Genes (coding)                    :: 4,545
            CDSs (with protein)               :: 4,545
            Genes (RNA)                       :: 103
            rRNAs                             :: 4, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (5S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 21 of 47
            Pseudo Genes (incomplete)         :: 31 of 47
            Pseudo Genes (internal stop)      :: 13 of 47
            Pseudo Genes (multiple problems)  :: 18 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5260432
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="38_O_207"
                     /db_xref="taxon:246167"
                     /geo_loc_name="France: Brest"
WGS         SLWI01000001-SLWI01000022
WGS_SCAFLD  NZ_SLWI01000001-NZ_SLWI01000022
//
LOCUS       NZ_NYKX01000000      4607992 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain 42068, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NYKX00000000
VERSION     NZ_NYKX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07722893
            Assembly: GCF_009670105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4607992)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X., Yang,R., Schmid,B.V., Guo,C.,
            Tian,H., Wang,M., Xu,B. and Stenseth,N.C.
  TITLE     Variable transmissibility of Yersinia pestis in response to
            changing environmental conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4607992)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X. and Yang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2017) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            NO.20 East Street Fengtai District, Beijing 100071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NYKX00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_NYKX00000000.  This version of the project
            (01) has the accession number NZ_NYKX01000000, and consists of
            sequences NYKX01000001-NYKX01000218.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Genome Coverage       :: 84.9x
            Sequencing Technology :: Illumina Hiseq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009670105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:03:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,213
            CDSs (total)                      :: 4,131
            Genes (coding)                    :: 3,948
            CDSs (with protein)               :: 3,948
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 88 of 183
            Pseudo Genes (incomplete)         :: 108 of 183
            Pseudo Genes (internal stop)      :: 18 of 183
            Pseudo Genes (multiple problems)  :: 27 of 183
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4607992
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="42068"
                     /isolation_source="Marmota baibacina"
                     /db_xref="taxon:632"
                     /geo_loc_name="China: Xinjiang Guertu"
                     /collection_date="1989-07-28"
WGS         NYKX01000001-NYKX01000218
WGS_SCAFLD  NZ_NYKX01000001-NZ_NYKX01000218
//
LOCUS       NZ_SMCE01000000      5074559 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain GV1692, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMCE00000000
VERSION     NZ_SMCE00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362344
            Assembly: GCF_004342805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5074559)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5074559)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMCE00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMCE00000000.  This version of the project
            (01) has the accession number NZ_SMCE01000000, and consists of
            sequences SMCE01000001-SMCE01000022.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 295.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342805.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:49:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,505
            CDSs (total)                      :: 4,398
            Genes (coding)                    :: 4,369
            CDSs (with protein)               :: 4,369
            Genes (RNA)                       :: 107
            rRNAs                             :: 4, 2, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 2, 1, 4 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 29
            CDSs (without protein)            :: 29
            Pseudo Genes (ambiguous residues) :: 0 of 29
            Pseudo Genes (frameshifted)       :: 11 of 29
            Pseudo Genes (incomplete)         :: 18 of 29
            Pseudo Genes (internal stop)      :: 4 of 29
            Pseudo Genes (multiple problems)  :: 4 of 29
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5074559
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="GV1692"
                     /db_xref="taxon:246167"
                     /geo_loc_name="Germany: Sylt"
WGS         SMCE01000001-SMCE01000022
WGS_SCAFLD  NZ_SMCE01000001-NZ_SMCE01000022
//
LOCUS       NZ_NYKM01000000      4605284 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain 42081, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NYKM00000000
VERSION     NZ_NYKM00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07722904
            Assembly: GCF_009669935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4605284)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X., Yang,R., Schmid,B.V., Guo,C.,
            Tian,H., Wang,M., Xu,B. and Stenseth,N.C.
  TITLE     Variable transmissibility of Yersinia pestis in response to
            changing environmental conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4605284)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X. and Yang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2017) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            NO.20 East Street Fengtai District, Beijing 100071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NYKM00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_NYKM00000000.  This version of the project
            (01) has the accession number NZ_NYKM01000000, and consists of
            sequences NYKM01000001-NYKM01000229.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Genome Coverage       :: 97.4x
            Sequencing Technology :: Illumina Hiseq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009669935.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:06:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,203
            CDSs (total)                      :: 4,120
            Genes (coding)                    :: 3,941
            CDSs (with protein)               :: 3,941
            Genes (RNA)                       :: 83
            rRNAs                             :: 2, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4 (5S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 86 of 179
            Pseudo Genes (incomplete)         :: 107 of 179
            Pseudo Genes (internal stop)      :: 17 of 179
            Pseudo Genes (multiple problems)  :: 27 of 179
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4605284
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="42081"
                     /isolation_source="Citellus undulatus"
                     /db_xref="taxon:632"
                     /geo_loc_name="China: Xinjiang Guertu"
                     /collection_date="1995-08-15"
WGS         NYKM01000001-NYKM01000229
WGS_SCAFLD  NZ_NYKM01000001-NZ_NYKM01000229
//
LOCUS       NZ_SMCC01000000      5160861 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio crassostreae strain SOB6_12, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMCC00000000
VERSION     NZ_SMCC00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362348
            Assembly: GCF_004342375.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio crassostreae
  ORGANISM  Vibrio crassostreae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5160861)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome
            sequencing to study the core and pangenomes of soil and
            plant-associated prokaryotes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5160861)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMCC00000000.1.
            The Vibrio crassostreae whole genome shotgun (WGS) project has the
            project accession NZ_SMCC00000000.  This version of the project
            (01) has the accession number NZ_SMCC01000000, and consists of
            sequences SMCC01000001-SMCC01000031.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 291.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004342375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:56:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,555
            CDSs (total)                      :: 4,457
            Genes (coding)                    :: 4,426
            CDSs (with protein)               :: 4,426
            Genes (RNA)                       :: 98
            rRNAs                             :: 3, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 15 of 31
            Pseudo Genes (incomplete)         :: 17 of 31
            Pseudo Genes (internal stop)      :: 5 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5160861
                     /organism="Vibrio crassostreae"
                     /mol_type="genomic DNA"
                     /strain="SOB6_12"
                     /db_xref="taxon:246167"
                     /geo_loc_name="Germany: Sylt"
WGS         SMCC01000001-SMCC01000031
WGS_SCAFLD  NZ_SMCC01000001-NZ_SMCC01000031
//
LOCUS       NZ_NYKJ01000000      4603679 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain 42085, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NYKJ00000000
VERSION     NZ_NYKJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07722907
            Assembly: GCF_009669905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4603679)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X., Yang,R., Schmid,B.V., Guo,C.,
            Tian,H., Wang,M., Xu,B. and Stenseth,N.C.
  TITLE     Variable transmissibility of Yersinia pestis in response to
            changing environmental conditions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4603679)
  AUTHORS   Cui,Y., Zhang,Y., Yang,C., Yang,X. and Yang,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-SEP-2017) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology,
            NO.20 East Street Fengtai District, Beijing 100071, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NYKJ00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_NYKJ00000000.  This version of the project
            (01) has the accession number NZ_NYKJ01000000, and consists of
            sequences NYKJ01000001-NYKJ01000241.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Genome Coverage       :: 97.5x
            Sequencing Technology :: Illumina Hiseq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009669905.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:04:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,220
            CDSs (total)                      :: 4,135
            Genes (coding)                    :: 3,955
            CDSs (with protein)               :: 3,955
            Genes (RNA)                       :: 85
            rRNAs                             :: 2, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4 (5S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 180
            CDSs (without protein)            :: 180
            Pseudo Genes (ambiguous residues) :: 0 of 180
            Pseudo Genes (frameshifted)       :: 87 of 180
            Pseudo Genes (incomplete)         :: 106 of 180
            Pseudo Genes (internal stop)      :: 19 of 180
            Pseudo Genes (multiple problems)  :: 28 of 180
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603679
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="42085"
                     /isolation_source="Citellus undulatus"
                     /db_xref="taxon:632"
                     /geo_loc_name="China: Xinjiang Guertu"
                     /collection_date="2001-07-07"
WGS         NYKJ01000001-NYKJ01000241
WGS_SCAFLD  NZ_NYKJ01000001-NZ_NYKJ01000241
//
LOCUS       NZ_JAAODB010000000   2244313 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain BCC 4230, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAODB000000000
VERSION     NZ_JAAODB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219526
            Assembly: GCF_016466215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2244313)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2244313)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAODB000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAODB000000000.  This version of the project
            (01) has the accession number NZ_JAAODB010000000, and consists of
            sequences JAAODB010000001-JAAODB010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 331x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016466215.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:22:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,250
            CDSs (total)                      :: 2,149
            Genes (coding)                    :: 2,096
            CDSs (with protein)               :: 2,096
            Genes (RNA)                       :: 101
            rRNAs                             :: 9, 7, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 6, 2 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 53
            CDSs (without protein)            :: 53
            Pseudo Genes (ambiguous residues) :: 0 of 53
            Pseudo Genes (frameshifted)       :: 18 of 53
            Pseudo Genes (incomplete)         :: 21 of 53
            Pseudo Genes (internal stop)      :: 20 of 53
            Pseudo Genes (multiple problems)  :: 5 of 53
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244313
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="BCC 4230"
                     /isolation_source="sourdough"
                     /db_xref="taxon:1583"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAAODB010000001-JAAODB010000050
WGS_SCAFLD  NZ_JAAODB010000001-NZ_JAAODB010000050
//
LOCUS       NZ_JAAODE010000000   2315959 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain BCC 3038, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAODE000000000
VERSION     NZ_JAAODE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219523
            Assembly: GCF_016466295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2315959)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2315959)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAODE000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAODE000000000.  This version of the project
            (01) has the accession number NZ_JAAODE010000000, and consists of
            sequences JAAODE010000001-JAAODE010000052.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 334x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016466295.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:24:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,325
            CDSs (total)                      :: 2,224
            Genes (coding)                    :: 2,167
            CDSs (with protein)               :: 2,167
            Genes (RNA)                       :: 101
            rRNAs                             :: 9, 7, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 6, 2 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 19 of 57
            Pseudo Genes (incomplete)         :: 27 of 57
            Pseudo Genes (internal stop)      :: 20 of 57
            Pseudo Genes (multiple problems)  :: 8 of 57
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2315959
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="BCC 3038"
                     /isolation_source="sourdough"
                     /db_xref="taxon:1583"
                     /geo_loc_name="Poland"
                     /collection_date="2019"
WGS         JAAODE010000001-JAAODE010000052
WGS_SCAFLD  NZ_JAAODE010000001-NZ_JAAODE010000052
//
LOCUS       NZ_JAAODA010000000   2080289 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Weissella confusa strain BCC 4255, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAODA000000000
VERSION     NZ_JAAODA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14219527
            Assembly: GCF_016466205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Weissella confusa
  ORGANISM  Weissella confusa
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Lactobacillaceae; Weissella.
REFERENCE   1  (bases 1 to 2080289)
  AUTHORS   Bourdichon,F., Patrone,V., Fontana,A., Milani,G. and Morelli,L.
  TITLE     Safety demonstration of a microbial species for use in the food
            chain: Weissella confusa
  JOURNAL   Int J Food Microbiol 339, 109028 (2021)
   PUBMED   33352462
REFERENCE   2  (bases 1 to 2080289)
  AUTHORS   Fontana,A., Patrone,V. and Morelli,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2020) DiSTAS, Universita' Cattolica del Sacro
            Cuore, Via Emilia Parmense 84, Piacenza 29122, Italy
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAODA000000000.1.
            The Weissella confusa whole genome shotgun (WGS) project has the
            project accession NZ_JAAODA000000000.  This version of the project
            (01) has the accession number NZ_JAAODA010000000, and consists of
            sequences JAAODA010000001-JAAODA010000088.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 322x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016466205.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:23:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,073
            CDSs (total)                      :: 1,977
            Genes (coding)                    :: 1,913
            CDSs (with protein)               :: 1,913
            Genes (RNA)                       :: 96
            rRNAs                             :: 8, 6, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 5, 2 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 18 of 64
            Pseudo Genes (incomplete)         :: 33 of 64
            Pseudo Genes (internal stop)      :: 19 of 64
            Pseudo Genes (multiple problems)  :: 6 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080289
                     /organism="Weissella confusa"
                     /mol_type="genomic DNA"
                     /strain="BCC 4255"
                     /isolation_source="sourdough"
                     /db_xref="taxon:1583"
                     /geo_loc_name="China"
                     /collection_date="2019"
WGS         JAAODA010000001-JAAODA010000088
WGS_SCAFLD  NZ_JAAODA010000001-NZ_JAAODA010000088
//
LOCUS       NZ_CAWLLV010000000   5422106 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus ZF-90 isolate ena-yuan-GCF_000272125.2, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAWLLV000000000
VERSION     NZ_CAWLLV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115016950
            Assembly: GCF_963861875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus ZF-90
  ORGANISM  Vibrio splendidus ZF-90
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5422106)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWLLV000000000.1.
            The Vibrio splendidus ZF-90 whole genome shotgun (WGS) project has
            the project accession NZ_CAWLLV000000000.  This version of the
            project (01) has the accession number NZ_CAWLLV010000000, and
            consists of sequences CAWLLV010000001-CAWLLV010000183.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963861875.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:07:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,799
            CDSs (total)                      :: 4,774
            Genes (coding)                    :: 4,686
            CDSs (with protein)               :: 4,686
            Genes (RNA)                       :: 25
            rRNAs                             :: 3, 3 (16S, 23S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 15
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 25 of 88
            Pseudo Genes (incomplete)         :: 64 of 88
            Pseudo Genes (internal stop)      :: 4 of 88
            Pseudo Genes (multiple problems)  :: 4 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5422106
                     /organism="Vibrio splendidus ZF-90"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_000272125.2"
                     /db_xref="taxon:617147"
WGS         CAWLLV010000001-CAWLLV010000183
WGS_SCAFLD  NZ_CAWLLV010000001-NZ_CAWLLV010000183
//
LOCUS       NZ_CAWLFL010000000   5596386 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus 12B01 isolate ena-yuan-GCF_000152765.1, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAWLFL000000000
VERSION     NZ_CAWLFL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115016918
            Assembly: GCF_963860425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus 12B01
  ORGANISM  Vibrio splendidus 12B01
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5596386)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWLFL000000000.1.
            The Vibrio splendidus 12B01 whole genome shotgun (WGS) project has
            the project accession NZ_CAWLFL000000000.  This version of the
            project (01) has the accession number NZ_CAWLFL010000000, and
            consists of sequences CAWLFL010000001-CAWLFL010000026.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963860425.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:16:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,000
            CDSs (total)                      :: 4,894
            Genes (coding)                    :: 4,770
            CDSs (with protein)               :: 4,770
            Genes (RNA)                       :: 106
            rRNAs                             :: 9, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 2 (5S, 23S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 55 of 124
            Pseudo Genes (incomplete)         :: 69 of 124
            Pseudo Genes (internal stop)      :: 28 of 124
            Pseudo Genes (multiple problems)  :: 23 of 124
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5596386
                     /organism="Vibrio splendidus 12B01"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_000152765.1"
                     /db_xref="taxon:314291"
WGS         CAWLFL010000001-CAWLFL010000026
WGS_SCAFLD  NZ_CAWLFL010000001-NZ_CAWLFL010000026
//
LOCUS       NZ_CAWNVE010000000   5614301 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_002875495.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWNVE000000000
VERSION     NZ_CAWNVE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017586
            Assembly: GCF_963877945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5614301)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWNVE000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWNVE000000000.  This version of the project
            (01) has the accession number NZ_CAWNVE010000000, and consists of
            sequences CAWNVE010000001-CAWNVE010000099.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963877945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:16:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,044
            CDSs (total)                      :: 4,937
            Genes (coding)                    :: 4,848
            CDSs (with protein)               :: 4,848
            Genes (RNA)                       :: 107
            rRNAs                             :: 3, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 43 of 89
            Pseudo Genes (incomplete)         :: 51 of 89
            Pseudo Genes (internal stop)      :: 20 of 89
            Pseudo Genes (multiple problems)  :: 21 of 89
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5614301
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_002875495.1"
                     /db_xref="taxon:29497"
WGS         CAWNVE010000001-CAWNVE010000099
WGS_SCAFLD  NZ_CAWNVE010000001-NZ_CAWNVE010000099
//
LOCUS       NZ_CAWNSC010000000   5627598 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_002876945.2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWNSC000000000
VERSION     NZ_CAWNSC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017594
            Assembly: GCF_963877225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5627598)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWNSC000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWNSC000000000.  This version of the project
            (01) has the accession number NZ_CAWNSC010000000, and consists of
            sequences CAWNSC010000001-CAWNSC010000010.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963877225.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:23:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,030
            CDSs (total)                      :: 4,923
            Genes (coding)                    :: 4,818
            CDSs (with protein)               :: 4,818
            Genes (RNA)                       :: 107
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 6 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (5S, 16S)
            tRNAs                             :: 85
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 53 of 105
            Pseudo Genes (incomplete)         :: 52 of 105
            Pseudo Genes (internal stop)      :: 17 of 105
            Pseudo Genes (multiple problems)  :: 15 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5627598
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_002876945.2"
                     /db_xref="taxon:29497"
WGS         CAWNSC010000001-CAWNSC010000010
WGS_SCAFLD  NZ_CAWNSC010000001-NZ_CAWNSC010000010
//
LOCUS       NZ_JACSUF010000000   1834942 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus thermophilus strain S72, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACSUF000000000
VERSION     NZ_JACSUF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15923554
            Assembly: GCF_017366965.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus thermophilus
  ORGANISM  Streptococcus thermophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1834942)
  AUTHORS   Somerville,V.
  TITLE     Streptococcus thermophilus and Lactobacillus delbrueckii from
            RMK202
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1834942)
  AUTHORS   Somerville,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2020) Fundamental Microbiology, University of
            Lausanne, Biophore, Lausanne, Switzerland 1015, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACSUF000000000.1.
            The Streptococcus thermophilus whole genome shotgun (WGS) project
            has the project accession NZ_JACSUF000000000.  This version of the
            project (01) has the accession number NZ_JACSUF010000000, and
            consists of sequences JACSUF010000001-JACSUF010000031.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017366965.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:26:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,926
            CDSs (total)                      :: 1,877
            Genes (coding)                    :: 1,644
            CDSs (with protein)               :: 1,644
            Genes (RNA)                       :: 49
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 142 of 233
            Pseudo Genes (incomplete)         :: 101 of 233
            Pseudo Genes (internal stop)      :: 100 of 233
            Pseudo Genes (multiple problems)  :: 92 of 233
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834942
                     /organism="Streptococcus thermophilus"
                     /mol_type="genomic DNA"
                     /strain="S72"
                     /isolation_source="Cheese starter culture"
                     /db_xref="taxon:1308"
                     /geo_loc_name="Switzerland"
                     /collection_date="2019"
WGS         JACSUF010000001-JACSUF010000031
WGS_SCAFLD  NZ_JACSUF010000001-NZ_JACSUF010000031
//
LOCUS       NZ_JACSUJ010000000   1868869 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptococcus thermophilus strain 24737, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JACSUJ000000000
VERSION     NZ_JACSUJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15923546
            Assembly: GCF_017367005.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptococcus thermophilus
  ORGANISM  Streptococcus thermophilus
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Streptococcaceae; Streptococcus.
REFERENCE   1  (bases 1 to 1868869)
  AUTHORS   Somerville,V.
  TITLE     Streptococcus thermophilus and Lactobacillus delbrueckii from
            RMK202
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1868869)
  AUTHORS   Somerville,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2020) Fundamental Microbiology, University of
            Lausanne, Biophore, Lausanne, Switzerland 1015, Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACSUJ000000000.1.
            The Streptococcus thermophilus whole genome shotgun (WGS) project
            has the project accession NZ_JACSUJ000000000.  This version of the
            project (01) has the accession number NZ_JACSUJ010000000, and
            consists of sequences JACSUJ010000001-JACSUJ010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2020
            Assembly Method        :: Flye v. 2.7.1-b1590
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 300x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017367005.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:29:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,962
            CDSs (total)                      :: 1,870
            Genes (coding)                    :: 1,632
            CDSs (with protein)               :: 1,632
            Genes (RNA)                       :: 92
            rRNAs                             :: 6, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 238
            CDSs (without protein)            :: 238
            Pseudo Genes (ambiguous residues) :: 0 of 238
            Pseudo Genes (frameshifted)       :: 155 of 238
            Pseudo Genes (incomplete)         :: 90 of 238
            Pseudo Genes (internal stop)      :: 105 of 238
            Pseudo Genes (multiple problems)  :: 96 of 238
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1868869
                     /organism="Streptococcus thermophilus"
                     /mol_type="genomic DNA"
                     /strain="24737"
                     /isolation_source="Cheese starter culture"
                     /db_xref="taxon:1308"
                     /geo_loc_name="Switzerland"
                     /collection_date="2019"
WGS         JACSUJ010000001-JACSUJ010000002
WGS_SCAFLD  NZ_JACSUJ010000001-NZ_JACSUJ010000002
//
LOCUS       NZ_CAWPNM010000000   5278385 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_013114435.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWPNM000000000
VERSION     NZ_CAWPNM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018242
            Assembly: GCF_963889515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5278385)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWPNM000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWPNM000000000.  This version of the project
            (01) has the accession number NZ_CAWPNM010000000, and consists of
            sequences CAWPNM010000001-CAWPNM010000048.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963889515.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:32:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,681
            CDSs (total)                      :: 4,599
            Genes (coding)                    :: 4,549
            CDSs (with protein)               :: 4,549
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 3, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 23 of 50
            Pseudo Genes (incomplete)         :: 32 of 50
            Pseudo Genes (internal stop)      :: 7 of 50
            Pseudo Genes (multiple problems)  :: 9 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5278385
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_013114435.1"
                     /db_xref="taxon:29497"
WGS         CAWPNM010000001-CAWPNM010000048
WGS_SCAFLD  NZ_CAWPNM010000001-NZ_CAWPNM010000048
//
LOCUS       NZ_JABUNS010000000   4707906 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio diabolicus strain InDRE_ALI210_2019, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JABUNS000000000
VERSION     NZ_JABUNS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14845524
            Assembly: GCF_013332575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio diabolicus
  ORGANISM  Vibrio diabolicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio; Vibrio diabolicus subgroup.
REFERENCE   1  (bases 1 to 4707906)
  AUTHORS   Nava Soberanes,E.B., Mendieta Condado,E., Garces Ayala,F., Araiza
            Rodriguez,A., Aguilera Perez,P., Alfaro Lopez,A., Ibarra
            Buelna,A.C., Montes Colima,N.A., Lopez Martinez,I., Hernandez
            Rivas,L., Ramirez Gonzalez,J.E., Mendez Tenorio,A., Gonzalez
            Villa,M. and Buelna Romero,A.G.
  TITLE     Draft Genome Sequence of first Vibrio diabolicus in Mexico Strain
            InDRE-D1-M1, an emergent threat
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4707906)
  AUTHORS   Nava Soberanes,E.B., Mendieta Condado,E., Garces Ayala,F., Araiza
            Rodriguez,A., Aguilera Perez,P., Alfaro Lopez,A., Ibarra
            Buelna,A.C., Montes Colima,N.A., Lopez Martinez,I., Hernandez
            Rivas,L., Ramirez Gonzalez,J.E., Mendez Tenorio,A., Gonzalez
            Villa,M. and Buelna Romero,A.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2020) Unidad de Desarrollo Tecnologico e
            Investigacion Molecular, InDRE, Francisco de P. Miranda, Mexico,
            CDMX 01480, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABUNS000000000.1.
            The Vibrio diabolicus whole genome shotgun (WGS) project has the
            project accession NZ_JABUNS000000000.  This version of the project
            (01) has the accession number NZ_JABUNS010000000, and consists of
            sequences JABUNS010000001-JABUNS010000368.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date             :: 06-MAY-2020
            Assembly Method           :: Newbler v. 2.9
            Genome Representation     :: Full
            Expected Final Version    :: No
            Reference-guided Assembly :: NZ_CP014036.1, NZ_CP014037.1
            Genome Coverage           :: 63.5x
            Sequencing Technology     :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_013332575.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 11:26:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,479
            CDSs (total)                      :: 4,360
            Genes (coding)                    :: 4,241
            CDSs (with protein)               :: 4,241
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 101
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 32 of 119
            Pseudo Genes (incomplete)         :: 90 of 119
            Pseudo Genes (internal stop)      :: 4 of 119
            Pseudo Genes (multiple problems)  :: 5 of 119
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4707906
                     /organism="Vibrio diabolicus"
                     /mol_type="genomic DNA"
                     /strain="InDRE_ALI210_2019"
                     /isolation_source="shrimp"
                     /db_xref="taxon:50719"
                     /geo_loc_name="Mexico: Jalisco"
                     /lat_lon="20.34 N 103.4 W"
                     /collection_date="2019-07-15"
WGS         JABUNS010000001-JABUNS010000368
WGS_SCAFLD  NZ_JABUNS010000001-NZ_JABUNS010000368
//
LOCUS       NZ_CDXDWT010000000   5197535 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Vreelandella sedimenti isolate MarMAG_073237, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDXDWT000000000
VERSION     NZ_CDXDWT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120955980
            Assembly: GCF_978023375.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Vreelandella sedimenti (marine sediment metagenome)
  ORGANISM  Vreelandella sedimenti
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Oceanospirillales; Halomonadaceae; Vreelandella.
REFERENCE   1  (bases 1 to 5197535)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2026) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDXDWT000000000.1.
            The Vreelandella sedimenti whole genome shotgun (WGS) project has
            the project accession NZ_CDXDWT000000000.  This version of the
            project (01) has the accession number NZ_CDXDWT010000000, and
            consists of sequences CDXDWT010000001-CDXDWT010000083.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_978023375.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:36:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,938
            CDSs (total)                      :: 4,888
            Genes (coding)                    :: 4,808
            CDSs (with protein)               :: 4,808
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 80
            CDSs (without protein)            :: 80
            Pseudo Genes (ambiguous residues) :: 0 of 80
            Pseudo Genes (frameshifted)       :: 33 of 80
            Pseudo Genes (incomplete)         :: 54 of 80
            Pseudo Genes (internal stop)      :: 13 of 80
            Pseudo Genes (multiple problems)  :: 17 of 80
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5197535
                     /organism="Vreelandella sedimenti"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_073237"
                     /db_xref="taxon:2729618"
                     /environmental_sample
                     /geo_loc_name="Pacific Ocean"
                     /metagenome_source="marine sediment metagenome"
                     /metagenomic
WGS         CDXDWT010000001-CDXDWT010000083
WGS_SCAFLD  NZ_CDXDWT010000001-NZ_CDXDWT010000083
//
LOCUS       NZ_JAKNQD010000000   5139275 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio diabolicus strain PV270, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNQD000000000
VERSION     NZ_JAKNQD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805069
            Assembly: GCF_022288955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio diabolicus
  ORGANISM  Vibrio diabolicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio; Vibrio diabolicus subgroup.
REFERENCE   1  (bases 1 to 5139275)
  AUTHORS   Perez-Duque,A., Gonzalez-Munoz,A., Arboleda-Valencia,J.,
            Vivas-Aguas,L.J., Cordoba-Meza,T., Rodriguez-Rey,G.T.,
            Diaz-Guevara,P., Martinez-Urtaza,J. and Wiesner-Reyes,M.
  TITLE     Comparative Genomics of Clinical and Environmental Isolates of
            Vibrio spp. of Colombia: Implications of Traits Associated with
            Virulence and Resistance
  JOURNAL   Pathogens 10 (12), 1605 (2021)
   PUBMED   34959560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5139275)
  AUTHORS   Perez-Duque,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNQD000000000.1.
            The Vibrio diabolicus whole genome shotgun (WGS) project has the
            project accession NZ_JAKNQD000000000.  This version of the project
            (01) has the accession number NZ_JAKNQD010000000, and consists of
            sequences JAKNQD010000001-JAKNQD010000116.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022288955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:04:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,761
            CDSs (total)                      :: 4,681
            Genes (coding)                    :: 4,600
            CDSs (with protein)               :: 4,600
            Genes (RNA)                       :: 80
            rRNAs                             :: 8, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 64
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 35 of 81
            Pseudo Genes (incomplete)         :: 46 of 81
            Pseudo Genes (internal stop)      :: 23 of 81
            Pseudo Genes (multiple problems)  :: 17 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5139275
                     /organism="Vibrio diabolicus"
                     /mol_type="genomic DNA"
                     /strain="PV270"
                     /isolation_source="marine water"
                     /db_xref="taxon:50719"
                     /geo_loc_name="Colombia: Magdalena"
                     /lat_lon="10.4113 N 74.4057 W"
                     /collection_date="2019-05-28"
                     /collected_by="INVEMAR"
WGS         JAKNQD010000001-JAKNQD010000116
WGS_SCAFLD  NZ_JAKNQD010000001-NZ_JAKNQD010000116
//
LOCUS       NZ_JAKNPA010000000   4572704 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis strain PV7, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNPA000000000
VERSION     NZ_JAKNPA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805046
            Assembly: GCF_022289955.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4572704)
  AUTHORS   Perez,A., Arboleda,J., Narvaez,S., Vivas,J., Rodriguez,G.,
            Cordoba,T., Gonzalez,A. and Wiesner,M.
  TITLE     Environmental and clinical isolates of Vibrio species from Colombia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4572704)
  AUTHORS   Perez,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2021) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNPA000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JAKNPA000000000.  This version of the project
            (01) has the accession number NZ_JAKNPA010000000, and consists of
            sequences JAKNPA010000001-JAKNPA010000092.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022289955.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:06:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,349
            CDSs (total)                      :: 4,263
            Genes (coding)                    :: 4,204
            CDSs (with protein)               :: 4,204
            Genes (RNA)                       :: 86
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 76
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 13 of 59
            Pseudo Genes (incomplete)         :: 44 of 59
            Pseudo Genes (internal stop)      :: 8 of 59
            Pseudo Genes (multiple problems)  :: 6 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4572704
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /strain="PV7"
                     /isolation_source="Continental water"
                     /db_xref="taxon:676"
                     /geo_loc_name="Colombia: San Andres"
                     /lat_lon="12.5769 N 81.7051 W"
                     /collection_date="2011-05-09"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNPA010000001-JAKNPA010000092
WGS_SCAFLD  NZ_JAKNPA010000001-NZ_JAKNPA010000092
//
LOCUS       NZ_JAKNQE010000000   5056580 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio diabolicus strain PV89, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNQE000000000
VERSION     NZ_JAKNQE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805070
            Assembly: GCF_022289055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio diabolicus
  ORGANISM  Vibrio diabolicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio; Vibrio diabolicus subgroup.
REFERENCE   1  (bases 1 to 5056580)
  AUTHORS   Perez-Duque,A., Gonzalez-Munoz,A., Arboleda-Valencia,J.,
            Vivas-Aguas,L.J., Cordoba-Meza,T., Rodriguez-Rey,G.T.,
            Diaz-Guevara,P., Martinez-Urtaza,J. and Wiesner-Reyes,M.
  TITLE     Comparative Genomics of Clinical and Environmental Isolates of
            Vibrio spp. of Colombia: Implications of Traits Associated with
            Virulence and Resistance
  JOURNAL   Pathogens 10 (12), 1605 (2021)
   PUBMED   34959560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5056580)
  AUTHORS   Perez-Duque,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNQE000000000.1.
            The Vibrio diabolicus whole genome shotgun (WGS) project has the
            project accession NZ_JAKNQE000000000.  This version of the project
            (01) has the accession number NZ_JAKNQE010000000, and consists of
            sequences JAKNQE010000001-JAKNQE010000068.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022289055.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:12:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,647
            CDSs (total)                      :: 4,555
            Genes (coding)                    :: 4,467
            CDSs (with protein)               :: 4,467
            Genes (RNA)                       :: 92
            rRNAs                             :: 6, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 23S)
            partial rRNAs                     :: 3, 1 (16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 30 of 88
            Pseudo Genes (incomplete)         :: 49 of 88
            Pseudo Genes (internal stop)      :: 21 of 88
            Pseudo Genes (multiple problems)  :: 12 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5056580
                     /organism="Vibrio diabolicus"
                     /mol_type="genomic DNA"
                     /strain="PV89"
                     /isolation_source="marine water"
                     /db_xref="taxon:50719"
                     /geo_loc_name="Colombia: Magdalena"
                     /lat_lon="10.4113 N 74.4057 W"
                     /collection_date="2017-12-12"
                     /collected_by="Laboratorio de Salud Publica LSP Secretaria
                     Distrital de Salud de Bogota"
WGS         JAKNQE010000001-JAKNQE010000068
WGS_SCAFLD  NZ_JAKNQE010000001-NZ_JAKNQE010000068
//
LOCUS       NZ_JAKNQC010000000   5561065 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio diabolicus strain PV269, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAKNQC000000000
VERSION     NZ_JAKNQC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20805068
            Assembly: GCF_022288885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio diabolicus
  ORGANISM  Vibrio diabolicus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio; Vibrio diabolicus subgroup.
REFERENCE   1  (bases 1 to 5561065)
  AUTHORS   Perez-Duque,A., Gonzalez-Munoz,A., Arboleda-Valencia,J.,
            Vivas-Aguas,L.J., Cordoba-Meza,T., Rodriguez-Rey,G.T.,
            Diaz-Guevara,P., Martinez-Urtaza,J. and Wiesner-Reyes,M.
  TITLE     Comparative Genomics of Clinical and Environmental Isolates of
            Vibrio spp. of Colombia: Implications of Traits Associated with
            Virulence and Resistance
  JOURNAL   Pathogens 10 (12), 1605 (2021)
   PUBMED   34959560
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5561065)
  AUTHORS   Perez-Duque,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Biotechnology, Center for Bioinformatics
            and Computational Biology of Colombia BIOS, Ecoparque Los Yarumos,
            Edificio BIOS, Manizales, Caldas 170002, Colombia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAKNQC000000000.1.
            The Vibrio diabolicus whole genome shotgun (WGS) project has the
            project accession NZ_JAKNQC000000000.  This version of the project
            (01) has the accession number NZ_JAKNQC010000000, and consists of
            sequences JAKNQC010000001-JAKNQC010000835.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.6.2
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022288885.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:18:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,598
            CDSs (total)                      :: 5,522
            Genes (coding)                    :: 5,162
            CDSs (with protein)               :: 5,162
            Genes (RNA)                       :: 76
            rRNAs                             :: 6, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 62
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 360
            CDSs (without protein)            :: 360
            Pseudo Genes (ambiguous residues) :: 0 of 360
            Pseudo Genes (frameshifted)       :: 77 of 360
            Pseudo Genes (incomplete)         :: 264 of 360
            Pseudo Genes (internal stop)      :: 57 of 360
            Pseudo Genes (multiple problems)  :: 32 of 360
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5561065
                     /organism="Vibrio diabolicus"
                     /mol_type="genomic DNA"
                     /strain="PV269"
                     /isolation_source="marine water"
                     /db_xref="taxon:50719"
                     /geo_loc_name="Colombia: Magdalena"
                     /lat_lon="10.4113 N 74.4057 W"
                     /collection_date="2019-05-28"
                     /collected_by="INVEMAR"
WGS         JAKNQC010000001-JAKNQC010000835
WGS_SCAFLD  NZ_JAKNQC010000001-NZ_JAKNQC010000835
//
LOCUS       NZ_JACENX010000000   5561594 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio harveyi strain BII-7C, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JACENX000000000
VERSION     NZ_JACENX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15597505
            Assembly: GCF_024530995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio harveyi
  ORGANISM  Vibrio harveyi
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5561594)
  AUTHORS   Neetoo,H., Reega,K., Manoga,Z.S., Nazurally,N., Bhoyroo,V.,
            Allam,M., Jaufeerally-Fakim,Y., Ghoorah,A.W., Jaumdally,W.,
            Hossen,A.M., Mayghun,F., Ismail,A. and Hosenally,M.
  TITLE     Prevalence, Genomic Characterization, and Risk Assessment of Human
            Pathogenic Vibrio Species in Seafood
  JOURNAL   J Food Prot 85 (11), 1553-1565 (2022)
   PUBMED   35880931
REFERENCE   2  (bases 1 to 5561594)
  AUTHORS   Neetoo,H. and Allam,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JUL-2020) Agriculture and Food Science, University of
            Mauritius, Reduit Road, Reduit, Moka 80837, Mauritius
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JACENX000000000.1.
            The Vibrio harveyi whole genome shotgun (WGS) project has the
            project accession NZ_JACENX000000000.  This version of the project
            (01) has the accession number NZ_JACENX010000000, and consists of
            sequences JACENX010000001-JACENX010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024530995.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 12:44:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,082
            CDSs (total)                      :: 4,966
            Genes (coding)                    :: 4,939
            CDSs (with protein)               :: 4,939
            Genes (RNA)                       :: 116
            rRNAs                             :: 6, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 102
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 7 of 27
            Pseudo Genes (incomplete)         :: 19 of 27
            Pseudo Genes (internal stop)      :: 7 of 27
            Pseudo Genes (multiple problems)  :: 5 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5561594
                     /organism="Vibrio harveyi"
                     /mol_type="genomic DNA"
                     /strain="BII-7C"
                     /host="Epinephelus fasciatus"
                     /db_xref="taxon:669"
                     /geo_loc_name="Mauritius: Grand Gaube"
                     /lat_lon="20.0079 S 57.6684 E"
                     /collection_date="2017-08-04"
                     /collected_by="Vishwakalyan Bhoyroo"
WGS         JACENX010000001-JACENX010000025
WGS_SCAFLD  NZ_JACENX010000001-NZ_JACENX010000025
//
LOCUS       NZ_CAWQTV010000000   5341355 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio fluvialis isolate ena-yuan-GCF_022290035.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQTV000000000
VERSION     NZ_CAWQTV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115016698
            Assembly: GCF_963897595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio fluvialis
  ORGANISM  Vibrio fluvialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5341355)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQTV000000000.1.
            The Vibrio fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_CAWQTV000000000.  This version of the project
            (01) has the accession number NZ_CAWQTV010000000, and consists of
            sequences CAWQTV010000001-CAWQTV010000944.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963897595.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:11:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,698
            CDSs (total)                      :: 5,608
            Genes (coding)                    :: 5,206
            CDSs (with protein)               :: 5,206
            Genes (RNA)                       :: 90
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 81
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 402
            CDSs (without protein)            :: 402
            Pseudo Genes (ambiguous residues) :: 0 of 402
            Pseudo Genes (frameshifted)       :: 49 of 402
            Pseudo Genes (incomplete)         :: 356 of 402
            Pseudo Genes (internal stop)      :: 34 of 402
            Pseudo Genes (multiple problems)  :: 33 of 402
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5341355
                     /organism="Vibrio fluvialis"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_022290035.1"
                     /db_xref="taxon:676"
WGS         CAWQTV010000001-CAWQTV010000944
WGS_SCAFLD  NZ_CAWQTV010000001-NZ_CAWQTV010000944
//
LOCUS       NZ_CAWNYI010000000   5341905 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio splendidus isolate ena-yuan-GCF_003049905.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWNYI000000000
VERSION     NZ_CAWNYI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115017656
            Assembly: GCF_963878655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio splendidus
  ORGANISM  Vibrio splendidus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5341905)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWNYI000000000.1.
            The Vibrio splendidus whole genome shotgun (WGS) project has the
            project accession NZ_CAWNYI000000000.  This version of the project
            (01) has the accession number NZ_CAWNYI010000000, and consists of
            sequences CAWNYI010000001-CAWNYI010000063.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963878655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:15:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,671
            CDSs (total)                      :: 4,618
            Genes (coding)                    :: 4,557
            CDSs (with protein)               :: 4,557
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 20 of 61
            Pseudo Genes (incomplete)         :: 42 of 61
            Pseudo Genes (internal stop)      :: 12 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5341905
                     /organism="Vibrio splendidus"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_003049905.1"
                     /db_xref="taxon:29497"
WGS         CAWNYI010000001-CAWNYI010000063
WGS_SCAFLD  NZ_CAWNYI010000001-NZ_CAWNYI010000063
//
LOCUS       NZ_CAWLNC010000000   6120547 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio harveyi AOD131 isolate ena-yuan-GCF_000347555.1, whole
            genome shotgun sequencing project.
ACCESSION   NZ_CAWLNC000000000
VERSION     NZ_CAWLNC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115015365
            Assembly: GCF_963862185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio harveyi AOD131
  ORGANISM  Vibrio harveyi AOD131
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 6120547)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWLNC000000000.1.
            The Vibrio harveyi AOD131 whole genome shotgun (WGS) project has
            the project accession NZ_CAWLNC000000000.  This version of the
            project (01) has the accession number NZ_CAWLNC010000000, and
            consists of sequences CAWLNC010000001-CAWLNC010000061.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963862185.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:14:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,647
            CDSs (total)                      :: 5,542
            Genes (coding)                    :: 5,454
            CDSs (with protein)               :: 5,454
            Genes (RNA)                       :: 105
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 27 of 88
            Pseudo Genes (incomplete)         :: 64 of 88
            Pseudo Genes (internal stop)      :: 17 of 88
            Pseudo Genes (multiple problems)  :: 16 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6120547
                     /organism="Vibrio harveyi AOD131"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_000347555.1"
                     /db_xref="taxon:1287887"
WGS         CAWLNC010000001-CAWLNC010000061
WGS_SCAFLD  NZ_CAWLNC010000001-NZ_CAWLNC010000061
//
LOCUS       NZ_CBBNTM010000000   1755036 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Synechococcus sp. isolate
            PELAGICS-MAG-mn-bin004345-MAGGE-SM-12jul21., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBNTM000000000
VERSION     NZ_CBBNTM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460806
            Assembly: GCF_964929625.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Synechococcus sp. (freshwater metagenome)
  ORGANISM  Synechococcus sp.
            Bacteria; Bacillati; Cyanobacteriota; Cyanophyceae;
            Synechococcales; Synechococcaceae; Synechococcus.
REFERENCE   1  (bases 1 to 1755036)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBNTM000000000.1.
            The Synechococcus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBNTM000000000.  This version of the project
            (01) has the accession number NZ_CBBNTM010000000, and consists of
            sequences CBBNTM010000001-CBBNTM010000144.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964929625.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:30:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,011
            CDSs (total)                      :: 1,969
            Genes (coding)                    :: 1,935
            CDSs (with protein)               :: 1,935
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 0 of 34
            Pseudo Genes (incomplete)         :: 34 of 34
            Pseudo Genes (internal stop)      :: 0 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755036
                     /organism="Synechococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-mn-bin004345-MAGGE-SM-12jul21."
                     /isolation_source="Maggiore lake"
                     /db_xref="taxon:1131"
                     /environmental_sample
                     /geo_loc_name="Italy"
                     /collection_date="2021-07-12"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBNTM010000001-CBBNTM010000144
WGS_SCAFLD  NZ_CBBNTM010000001-NZ_CBBNTM010000144
//
LOCUS       NZ_CDVUGR010000000   4287070 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Vibrio proteolyticus isolate MarMAG_126606, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDVUGR000000000
VERSION     NZ_CDVUGR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747300
            Assembly: GCF_977770335.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Vibrio proteolyticus (seawater metagenome)
  ORGANISM  Vibrio proteolyticus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 4287070)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDVUGR000000000.1.
            The Vibrio proteolyticus whole genome shotgun (WGS) project has the
            project accession NZ_CDVUGR000000000.  This version of the project
            (01) has the accession number NZ_CDVUGR010000000, and consists of
            sequences CDVUGR010000001-CDVUGR010000522.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977770335.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:30:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,257
            CDSs (total)                      :: 4,221
            Genes (coding)                    :: 4,042
            CDSs (with protein)               :: 4,042
            Genes (RNA)                       :: 36
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 179
            CDSs (without protein)            :: 179
            Pseudo Genes (ambiguous residues) :: 0 of 179
            Pseudo Genes (frameshifted)       :: 17 of 179
            Pseudo Genes (incomplete)         :: 166 of 179
            Pseudo Genes (internal stop)      :: 7 of 179
            Pseudo Genes (multiple problems)  :: 9 of 179
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4287070
                     /organism="Vibrio proteolyticus"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126606"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:671"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-14"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDVUGR010000001-CDVUGR010000522
WGS_SCAFLD  NZ_CDVUGR010000001-NZ_CDVUGR010000522
//
LOCUS       NZ_CBBAOU010000000   3014686 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Tabrizicola sp. isolate
            PELAGICS-MAG-x7-bin073813-VRNZM-SM-23sep21., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBAOU000000000
VERSION     NZ_CBBAOU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460836
            Assembly: GCF_964840525.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Tabrizicola sp. (freshwater metagenome)
  ORGANISM  Tabrizicola sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Paracoccaceae; Tabrizicola.
REFERENCE   1  (bases 1 to 3014686)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBAOU000000000.1.
            The Tabrizicola sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBAOU000000000.  This version of the project
            (01) has the accession number NZ_CBBAOU010000000, and consists of
            sequences CBBAOU010000001-CBBAOU010000070.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964840525.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:44:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,107
            CDSs (total)                      :: 3,066
            Genes (coding)                    :: 2,974
            CDSs (with protein)               :: 2,974
            Genes (RNA)                       :: 41
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 24 of 92
            Pseudo Genes (incomplete)         :: 78 of 92
            Pseudo Genes (internal stop)      :: 15 of 92
            Pseudo Genes (multiple problems)  :: 23 of 92
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014686
                     /organism="Tabrizicola sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-x7-bin073813-VRNZM-SM-23sep21."
                     /isolation_source="Vransko-Zadar lake"
                     /db_xref="taxon:2005166"
                     /environmental_sample
                     /geo_loc_name="Croatia"
                     /collection_date="2021-09-23"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBAOU010000001-CBBAOU010000070
WGS_SCAFLD  NZ_CBBAOU010000001-NZ_CBBAOU010000070
//
LOCUS       NZ_JAGFOS010000000   3320693 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter soli strain AC1511, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAGFOS000000000
VERSION     NZ_JAGFOS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18385666
            Assembly: GCF_017592445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter soli
  ORGANISM  Acinetobacter soli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3320693)
  AUTHORS   Mohd Rani,F.
  TITLE     Acinetobacter spp. whole-genome sequenced from Terengganu
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3320693)
  AUTHORS   Mohd Rani,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2021) Faculty of Medicine, Universiti Sultan
            Zainal Abidin, Jalan Sultan Mahmud, Kuala Terengganu 20400,
            Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGFOS000000000.1.
            The Acinetobacter soli whole genome shotgun (WGS) project has the
            project accession NZ_JAGFOS000000000.  This version of the project
            (01) has the accession number NZ_JAGFOS010000000, and consists of
            sequences JAGFOS010000001-JAGFOS010000038.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017592445.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:42:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,148
            CDSs (total)                      :: 3,079
            Genes (coding)                    :: 3,047
            CDSs (with protein)               :: 3,047
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 8 of 32
            Pseudo Genes (incomplete)         :: 21 of 32
            Pseudo Genes (internal stop)      :: 9 of 32
            Pseudo Genes (multiple problems)  :: 5 of 32
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320693
                     /organism="Acinetobacter soli"
                     /mol_type="genomic DNA"
                     /strain="AC1511"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:487316"
                     /geo_loc_name="Malaysia"
                     /lat_lon="5.325464 N 103.151674 E"
                     /collection_date="2015"
                     /collected_by="UniSZA"
WGS         JAGFOS010000001-JAGFOS010000038
WGS_SCAFLD  NZ_JAGFOS010000001-NZ_JAGFOS010000038
//
LOCUS       NZ_JARBFK010000000   3992189 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter nosocomialis strain HNAN5299, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARBFK000000000
VERSION     NZ_JARBFK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32638100
            Assembly: GCF_028863445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter nosocomialis
  ORGANISM  Acinetobacter nosocomialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3992189)
  AUTHORS   Li,Y.
  TITLE     Acinetobacter nosocomialis strains HNAN5299 WGS
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3992189)
  AUTHORS   Li,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2023) Lab Medicine of Xiangya Hospital, Central
            South University, Xiangya Road, Changsha 410008, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARBFK000000000.1.
            The Acinetobacter nosocomialis whole genome shotgun (WGS) project
            has the project accession NZ_JARBFK000000000.  This version of the
            project (01) has the accession number NZ_JARBFK010000000, and
            consists of sequences JARBFK010000001-JARBFK010000098.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. v1.05
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_028863445.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:54:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,846
            CDSs (total)                      :: 3,776
            Genes (coding)                    :: 3,683
            CDSs (with protein)               :: 3,683
            Genes (RNA)                       :: 70
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 27 of 93
            Pseudo Genes (incomplete)         :: 64 of 93
            Pseudo Genes (internal stop)      :: 16 of 93
            Pseudo Genes (multiple problems)  :: 12 of 93
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3992189
                     /organism="Acinetobacter nosocomialis"
                     /mol_type="genomic DNA"
                     /strain="HNAN5299"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:106654"
                     /geo_loc_name="China: Hunan"
                     /lat_lon="28.12 N 112.59 E"
                     /collection_date="2020"
                     /collected_by="Xiangya Hospital"
WGS         JARBFK010000001-JARBFK010000098
WGS_SCAFLD  NZ_JARBFK010000001-NZ_JARBFK010000098
//
LOCUS       NZ_CDWAUG010000000   5597845 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Vibrio coralliilyticus isolate MarMAG_126446, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CDWAUG000000000
VERSION     NZ_CDWAUG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA120747273
            Assembly: GCF_977814405.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Vibrio coralliilyticus (seawater metagenome)
  ORGANISM  Vibrio coralliilyticus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5597845)
  AUTHORS   Avila Santos,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2025) UFZ, Department of Computational Biology
            and Chemistry - Microbial Data Science group, Permoserstrasse 15,
            Leipzig, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CDWAUG000000000.1.
            The Vibrio coralliilyticus whole genome shotgun (WGS) project has
            the project accession NZ_CDWAUG000000000.  This version of the
            project (01) has the accession number NZ_CDWAUG010000000, and
            consists of sequences CDWAUG010000001-CDWAUG010000051.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_977814405.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:43:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,172
            CDSs (total)                      :: 5,130
            Genes (coding)                    :: 5,099
            CDSs (with protein)               :: 5,099
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 8 of 31
            Pseudo Genes (incomplete)         :: 23 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            Pseudo Genes (multiple problems)  :: 4 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5597845
                     /organism="Vibrio coralliilyticus"
                     /mol_type="genomic DNA"
                     /isolate="MarMAG_126446"
                     /isolation_source="coastal seawater"
                     /db_xref="taxon:190893"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /collection_date="2016-08-06"
                     /metagenome_source="seawater metagenome"
                     /metagenomic
WGS         CDWAUG010000001-CDWAUG010000051
WGS_SCAFLD  NZ_CDWAUG010000001-NZ_CDWAUG010000051
//
LOCUS       NZ_JAGFOR010000000   3260687 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter soli strain AC15148, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAGFOR000000000
VERSION     NZ_JAGFOR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18385667
            Assembly: GCF_017592495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter soli
  ORGANISM  Acinetobacter soli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3260687)
  AUTHORS   Mohd Rani,F.
  TITLE     Acinetobacter spp. whole-genome sequenced from Terengganu
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3260687)
  AUTHORS   Mohd Rani,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2021) Faculty of Medicine, Universiti Sultan
            Zainal Abidin, Jalan Sultan Mahmud, Kuala Terengganu 20400,
            Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGFOR000000000.1.
            The Acinetobacter soli whole genome shotgun (WGS) project has the
            project accession NZ_JAGFOR000000000.  This version of the project
            (01) has the accession number NZ_JAGFOR010000000, and consists of
            sequences JAGFOR010000001-JAGFOR010000047.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017592495.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:49:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,084
            CDSs (total)                      :: 3,014
            Genes (coding)                    :: 2,990
            CDSs (with protein)               :: 2,990
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 11 of 24
            Pseudo Genes (incomplete)         :: 16 of 24
            Pseudo Genes (internal stop)      :: 5 of 24
            Pseudo Genes (multiple problems)  :: 7 of 24
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260687
                     /organism="Acinetobacter soli"
                     /mol_type="genomic DNA"
                     /strain="AC15148"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:487316"
                     /geo_loc_name="Malaysia"
                     /lat_lon="5.325464 N 103.151674 E"
                     /collection_date="2015"
                     /collected_by="UniSZA"
WGS         JAGFOR010000001-JAGFOR010000047
WGS_SCAFLD  NZ_JAGFOR010000001-NZ_JAGFOR010000047
//
LOCUS       NZ_JAOEDJ010000000   3565157 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter ursingii strain GD04036, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEDJ000000000
VERSION     NZ_JAOEDJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525492
            Assembly: GCF_029837235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3565157)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3565157)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEDJ000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOEDJ000000000.  This version of the
            project (01) has the accession number NZ_JAOEDJ010000000, and
            consists of sequences JAOEDJ010000001-JAOEDJ010000141.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 136.504x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837235.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:20:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,440
            CDSs (total)                      :: 3,379
            Genes (coding)                    :: 3,260
            CDSs (with protein)               :: 3,260
            Genes (RNA)                       :: 61
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 35 of 119
            Pseudo Genes (incomplete)         :: 87 of 119
            Pseudo Genes (internal stop)      :: 28 of 119
            Pseudo Genes (multiple problems)  :: 24 of 119
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565157
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD04036"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-06-04"
WGS         JAOEDJ010000001-JAOEDJ010000141
WGS_SCAFLD  NZ_JAOEDJ010000001-NZ_JAOEDJ010000141
//
LOCUS       NZ_JAOECI010000000   3798117 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter ursingii strain GD04063, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOECI000000000
VERSION     NZ_JAOECI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525519
            Assembly: GCF_029836735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3798117)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3798117)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOECI000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOECI000000000.  This version of the
            project (01) has the accession number NZ_JAOECI010000000, and
            consists of sequences JAOECI010000001-JAOECI010000158.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105.338x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029836735.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:23:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,638
            CDSs (total)                      :: 3,587
            Genes (coding)                    :: 3,484
            CDSs (with protein)               :: 3,484
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 38 of 103
            Pseudo Genes (incomplete)         :: 73 of 103
            Pseudo Genes (internal stop)      :: 19 of 103
            Pseudo Genes (multiple problems)  :: 21 of 103
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798117
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD04063"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-07-09"
WGS         JAOECI010000001-JAOECI010000158
WGS_SCAFLD  NZ_JAOECI010000001-NZ_JAOECI010000158
//
LOCUS       NZ_JBMULT010000000   5021708 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Stutzerimonas stutzeri strain NPDC079991, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBMULT000000000
VERSION     NZ_JBMULT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46054493
            Assembly: GCF_049534755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Stutzerimonas stutzeri (Pseudomonas stutzeri)
  ORGANISM  Stutzerimonas stutzeri
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Stutzerimonas.
REFERENCE   1  (bases 1 to 5021708)
  AUTHORS   Kalkreuter,E., Kautsar,S.A., Yang,D., Bader,C.D., Teijaro,C.N.,
            Fluegel,L., Davis,C.M., Simpson,J.R., Lauterbach,L., Steele,A.D.,
            Gui,C., Meng,S., Li,G., Viehrig,K., Ye,F., Su,P., Kiefer,A.F.,
            Nichols,A., Cepeda,A.J., Yan,W., Fan,B., Jiang,Y., Adhikari,A.,
            Zheng,C.-J., Schuster,L., Cowan,T.M., Smanski,M.J., Chevrette,M.G.,
            De Carvalho,L.P.S. and Shen,B.
  TITLE     The Natural Products Discovery Center: Release of the First 8490
            Sequenced Strains for Exploring Actinobacteria Biosynthetic
            Diversity
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5021708)
  AUTHORS   Kalkreuter,E., Kautsar,S.A., Yang,D., Bader,C.D., Teijaro,C.N.,
            Fluegel,L., Davis,C.M., Simpson,J.R., Lauterbach,L., Steele,A.D.,
            Gui,C., Meng,S., Li,G., Viehrig,K., Ye,F., Su,P., Kiefer,A.F.,
            Nichols,A., Cepeda,A.J., Yan,W., Fan,B., Jiang,Y., Adhikari,A.,
            Zheng,C.-J., Schuster,L., Cowan,T.M., Smanski,M.J., Chevrette,M.G.,
            De Carvalho,L.P.S. and Shen,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2025) Natural Products Discovery Center, The
            Herbert Wertheim UF Scripps Institute for Biomedical Innovation &
            Technology, 110 Scripps Way, Jupiter, FL 33458, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMULT000000000.1.
            The Stutzerimonas stutzeri whole genome shotgun (WGS) project has
            the project accession NZ_JBMULT000000000.  This version of the
            project (01) has the accession number NZ_JBMULT010000000, and
            consists of sequences JBMULT010000001-JBMULT010000082.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 55.65556794497922x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049534755.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:45:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,842
            CDSs (total)                      :: 4,780
            Genes (coding)                    :: 4,710
            CDSs (with protein)               :: 4,710
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 22 of 70
            Pseudo Genes (incomplete)         :: 56 of 70
            Pseudo Genes (internal stop)      :: 7 of 70
            Pseudo Genes (multiple problems)  :: 14 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5021708
                     /organism="Stutzerimonas stutzeri"
                     /mol_type="genomic DNA"
                     /strain="NPDC079991"
                     /db_xref="taxon:316"
                     /collection_date="1990-11-14"
WGS         JBMULT010000001-JBMULT010000082
WGS_SCAFLD  NZ_JBMULT010000001-NZ_JBMULT010000082
//
LOCUS       NZ_JAOECY010000000   3637401 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter ursingii strain GD04047, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOECY000000000
VERSION     NZ_JAOECY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525503
            Assembly: GCF_029837055.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3637401)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3637401)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOECY000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOECY000000000.  This version of the
            project (01) has the accession number NZ_JAOECY010000000, and
            consists of sequences JAOECY010000001-JAOECY010000056.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 64.018x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837055.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:22:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,452
            CDSs (total)                      :: 3,389
            Genes (coding)                    :: 3,317
            CDSs (with protein)               :: 3,317
            Genes (RNA)                       :: 63
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 22 of 72
            Pseudo Genes (incomplete)         :: 53 of 72
            Pseudo Genes (internal stop)      :: 12 of 72
            Pseudo Genes (multiple problems)  :: 13 of 72
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637401
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD04047"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-07-09"
WGS         JAOECY010000001-JAOECY010000056
WGS_SCAFLD  NZ_JAOECY010000001-NZ_JAOECY010000056
//
LOCUS       NZ_JBNBNZ010000000   5132629 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vibrio alginolyticus strain DEN26, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBNBNZ000000000
VERSION     NZ_JBNBNZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47772594
            Assembly: GCF_049725305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vibrio alginolyticus
  ORGANISM  Vibrio alginolyticus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae; Vibrio.
REFERENCE   1  (bases 1 to 5132629)
  AUTHORS   Samson,J.S., Murphy,S., Rowley,D.C. and Gomez-Chiarri,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2025) Fisheries, Animal, and Veterinary Sciences,
            University of Rhode Island, 120 Flagg Rd. CBLS, Kingston, RI 02881,
            USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNBNZ000000000.1.
            The Vibrio alginolyticus whole genome shotgun (WGS) project has the
            project accession NZ_JBNBNZ000000000.  This version of the project
            (01) has the accession number NZ_JBNBNZ010000000, and consists of
            sequences JBNBNZ010000001-JBNBNZ010000100.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: JAN-2025
            Assembly Method        :: SPAdes v. JAN-2025
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 24.2147x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049725305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 14:44:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,645
            CDSs (total)                      :: 4,553
            Genes (coding)                    :: 4,527
            CDSs (with protein)               :: 4,527
            Genes (RNA)                       :: 92
            rRNAs                             :: 4, 7, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 1, 7, 5 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 6 of 26
            Pseudo Genes (incomplete)         :: 18 of 26
            Pseudo Genes (internal stop)      :: 5 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5132629
                     /organism="Vibrio alginolyticus"
                     /mol_type="genomic DNA"
                     /strain="DEN26"
                     /isolation_source="Larvae"
                     /host="Crassostrea virginica"
                     /db_xref="taxon:663"
                     /lab_host="Marta Gomez-Chiarri"
                     /geo_loc_name="USA: Northeast"
                     /altitude="0 m"
                     /collection_date="2023"
                     /collected_by="Jaypee Samson"
                     /identified_by="Jaypee Samson"
WGS         JBNBNZ010000001-JBNBNZ010000100
WGS_SCAFLD  NZ_JBNBNZ010000001-NZ_JBNBNZ010000100
//
LOCUS       NZ_JAOEDP010000000   3832207 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter ursingii strain GD04030, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEDP000000000
VERSION     NZ_JAOEDP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525486
            Assembly: GCF_029837395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3832207)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3832207)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEDP000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOEDP000000000.  This version of the
            project (01) has the accession number NZ_JAOEDP010000000, and
            consists of sequences JAOEDP010000001-JAOEDP010000149.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 65.646x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837395.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:24:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,698
            CDSs (total)                      :: 3,629
            Genes (coding)                    :: 3,516
            CDSs (with protein)               :: 3,516
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 40 of 113
            Pseudo Genes (incomplete)         :: 81 of 113
            Pseudo Genes (internal stop)      :: 20 of 113
            Pseudo Genes (multiple problems)  :: 22 of 113
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3832207
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD04030"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-06-04"
WGS         JAOEDP010000001-JAOEDP010000149
WGS_SCAFLD  NZ_JAOEDP010000001-NZ_JAOEDP010000149
//
LOCUS       NZ_NHMZ01000000      4650126 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis subsp. microtus bv. Altaica strain SCPM-O-DNA-09,
            whole genome shotgun sequencing project.
ACCESSION   NZ_NHMZ00000000
VERSION     NZ_NHMZ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05521434
            Assembly: GCF_002188775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis subsp. microtus bv. Altaica
  ORGANISM  Yersinia pestis subsp. microtus bv. Altaica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4650126)
  AUTHORS   Bogun,A., Kislichkina,A., Mayskaya,N., Platonov,M., Kadnikova,L.,
            Solomencev,V., Balakhonov,S. and Anisimov,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2017) Science Department, SRCAMB, Building 1,
            Obolensk, Moscow Region 142279, Russia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NHMZ00000000.1.
            The Yersinia pestis subsp. microtus bv. Altaica whole genome
            shotgun (WGS) project has the project accession NZ_NHMZ00000000.
            This version of the project (01) has the accession number
            NZ_NHMZ01000000, and consists of sequences
            NHMZ01000001-NHMZ01000179.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 56.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002188775.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:12:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,265
            CDSs (total)                      :: 4,176
            Genes (coding)                    :: 3,935
            CDSs (with protein)               :: 3,935
            Genes (RNA)                       :: 89
            rRNAs                             :: 8, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 66
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 241
            CDSs (without protein)            :: 241
            Pseudo Genes (ambiguous residues) :: 0 of 241
            Pseudo Genes (frameshifted)       :: 98 of 241
            Pseudo Genes (incomplete)         :: 152 of 241
            Pseudo Genes (internal stop)      :: 25 of 241
            Pseudo Genes (multiple problems)  :: 29 of 241
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4650126
                     /organism="Yersinia pestis subsp. microtus bv. Altaica"
                     /mol_type="genomic DNA"
                     /strain="SCPM-O-DNA-09"
                     /sub_species="microtus"
                     /db_xref="taxon:385967"
                     /collection_date="2007-10-15"
                     /biovar="Altaica"
WGS         NHMZ01000001-NHMZ01000179
WGS_SCAFLD  NZ_NHMZ01000001-NZ_NHMZ01000179
//
LOCUS       NZ_MIEB01000000      4610749 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis subsp. microtus bv. Caucasica strain SCPM-O-B-6983,
            whole genome shotgun sequencing project.
ACCESSION   NZ_MIEB00000000
VERSION     NZ_MIEB00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05521424
            Assembly: GCF_001972415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis subsp. microtus bv. Caucasica
  ORGANISM  Yersinia pestis subsp. microtus bv. Caucasica
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4610749)
  AUTHORS   Bogun,A., Kislichkina,A., Mayskaya,N., Platonov,M., Kadnikova,L.,
            Solomencev,V. and Anisimov,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2016) Science Department, SRCAMB, Building 1,
            Obolensk, Moscow region 142279, Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            MIEB00000000.1.
            The Yersinia pestis subsp. microtus bv. Caucasica whole genome
            shotgun (WGS) project has the project accession NZ_MIEB00000000.
            This version of the project (01) has the accession number
            NZ_MIEB01000000, and consists of sequences
            MIEB01000001-MIEB01000171.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001972415.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:14:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,270
            CDSs (total)                      :: 4,183
            Genes (coding)                    :: 3,944
            CDSs (with protein)               :: 3,944
            Genes (RNA)                       :: 87
            rRNAs                             :: 8, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 65
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 239
            CDSs (without protein)            :: 239
            Pseudo Genes (ambiguous residues) :: 0 of 239
            Pseudo Genes (frameshifted)       :: 115 of 239
            Pseudo Genes (incomplete)         :: 139 of 239
            Pseudo Genes (internal stop)      :: 21 of 239
            Pseudo Genes (multiple problems)  :: 31 of 239
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4610749
                     /organism="Yersinia pestis subsp. microtus bv. Caucasica"
                     /mol_type="genomic DNA"
                     /strain="SCPM-O-B-6983"
                     /sub_species="microtus"
                     /db_xref="taxon:385966"
                     /collection_date="1969-06-16"
                     /biovar="Caucasica"
WGS         MIEB01000001-MIEB01000171
WGS_SCAFLD  NZ_MIEB01000001-NZ_MIEB01000171
//
LOCUS       NZ_JAOCCL010000000   3466013 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03885, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCCL000000000
VERSION     NZ_JAOCCL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525341
            Assembly: GCF_029840425.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3466013)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3466013)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCCL000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCCL000000000.  This version of the
            project (01) has the accession number NZ_JAOCCL010000000, and
            consists of sequences JAOCCL010000001-JAOCCL010000139.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 91.301x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029840425.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:28:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,445
            CDSs (total)                      :: 3,365
            Genes (coding)                    :: 3,219
            CDSs (with protein)               :: 3,219
            Genes (RNA)                       :: 80
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1 (23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 58 of 146
            Pseudo Genes (incomplete)         :: 88 of 146
            Pseudo Genes (internal stop)      :: 31 of 146
            Pseudo Genes (multiple problems)  :: 23 of 146
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3466013
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03885"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="USA"
                     /collection_date="2018-04-09"
WGS         JAOCCL010000001-JAOCCL010000139
WGS_SCAFLD  NZ_JAOCCL010000001-NZ_JAOCCL010000139
//
LOCUS       NZ_CWJJ01000000      4385299 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pseudotuberculosis strain Y716, whole genome shotgun
            sequencing project.
ACCESSION   NZ_CWJJ00000000
VERSION     NZ_CWJJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA859939
            Assembly: GCF_001244655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pseudotuberculosis
  ORGANISM  Yersinia pseudotuberculosis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1
  AUTHORS   Informatics,Pathogen.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2015) SC, Wellcome Trust Sanger Institute, CB10
            1SA, United Kingdom
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CWJJ00000000.1.
            The Yersinia pseudotuberculosis whole genome shotgun (WGS) project
            has the project accession NZ_CWJJ00000000.  This version of the
            project (01) has the accession number NZ_CWJJ01000000, and consists
            of sequences CWJJ01000001-CWJJ01000051.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001244655.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 09:45:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,960
            CDSs (total)                      :: 3,884
            Genes (coding)                    :: 3,653
            CDSs (with protein)               :: 3,653
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 231
            CDSs (without protein)            :: 231
            Pseudo Genes (ambiguous residues) :: 0 of 231
            Pseudo Genes (frameshifted)       :: 129 of 231
            Pseudo Genes (incomplete)         :: 115 of 231
            Pseudo Genes (internal stop)      :: 35 of 231
            Pseudo Genes (multiple problems)  :: 43 of 231
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4385299
                     /organism="Yersinia pseudotuberculosis"
                     /mol_type="genomic DNA"
                     /strain="Y716"
                     /serovar="O:1a"
                     /isolation_source="not known"
                     /db_xref="taxon:633"
                     /collection_date="1900/2008"
WGS         CWJJ01000001-CWJJ01000051
WGS_SCAFLD  NZ_CWJJ01000001-NZ_CWJJ01000051
//
LOCUS       NZ_LIXX01000000      4825865 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Yersinia pestis strain Yp1945, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LIXX00000000
VERSION     NZ_LIXX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04012733
            Assembly: GCF_001509865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Yersinia pestis
  ORGANISM  Yersinia pestis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Yersiniaceae; Yersinia.
REFERENCE   1  (bases 1 to 4825865)
  AUTHORS   Leiser,O.P., Merkley,E.D., Clowers,B.H., Deatherage Kaiser,B.L.,
            Lin,A., Hutchison,J.R., Melville,A.M., Wagner,D.M., Keim,P.S.,
            Foster,J.T. and Kreuzer,H.W.
  TITLE     Investigation of Yersinia pestis Laboratory Adaptation through a
            Combined Genomics and Proteomics Approach
  JOURNAL   PLoS One 10 (11), e0142997 (2015)
   PUBMED   26599979
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4825865)
  AUTHORS   Leiser,O.P., Merkley,E.D., Clowers,B.H., Deatherage Kaiser,B.L.,
            Lin,A., Hutchison,J., Wagner,D.M., Keim,P.S., Kreuzer,H. and
            Foster,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2015) Chemical and Biological Signature Sciences,
            Pacific Northwest National Laboratory, 902 Battelle Blvd PO Box 999
            MSIN P7-50, Richland, WA 99352, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LIXX00000000.1.
            The Yersinia pestis whole genome shotgun (WGS) project has the
            project accession NZ_LIXX00000000.  This version of the project
            (01) has the accession number NZ_LIXX01000000, and consists of
            sequences LIXX01000001-LIXX01000012.
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: ABySS v. 1.3.2
            Genome Representation     :: Full
            Expected Final Version    :: Yes
            Reference-guided Assembly :: GCA_000009065.1
            Genome Coverage           :: 195.0x
            Sequencing Technology     :: Illumina GAIIx
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001509865.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 10:57:27
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,413
            CDSs (total)                      :: 4,313
            Genes (coding)                    :: 4,093
            CDSs (with protein)               :: 4,093
            Genes (RNA)                       :: 100
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 220
            CDSs (without protein)            :: 220
            Pseudo Genes (ambiguous residues) :: 0 of 220
            Pseudo Genes (frameshifted)       :: 92 of 220
            Pseudo Genes (incomplete)         :: 144 of 220
            Pseudo Genes (internal stop)      :: 21 of 220
            Pseudo Genes (multiple problems)  :: 33 of 220
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4825865
                     /organism="Yersinia pestis"
                     /mol_type="genomic DNA"
                     /strain="Yp1945"
                     /isolation_source="Flea captured from prairie dog burrow
                     showing signs of recent die-off"
                     /db_xref="taxon:632"
                     /geo_loc_name="USA: Texas"
                     /collection_date="2009"
                     /collected_by="State of Texas"
WGS         LIXX01000001-LIXX01000012
WGS_SCAFLD  NZ_LIXX01000001-NZ_LIXX01000012
//
LOCUS       NZ_JAOCDY010000000   3303864 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03844, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCDY000000000
VERSION     NZ_JAOCDY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525300
            Assembly: GCF_029841175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3303864)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3303864)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCDY000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCDY000000000.  This version of the
            project (01) has the accession number NZ_JAOCDY010000000, and
            consists of sequences JAOCDY010000001-JAOCDY010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.082x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029841175.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:36:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,247
            CDSs (total)                      :: 3,209
            Genes (coding)                    :: 3,073
            CDSs (with protein)               :: 3,073
            Genes (RNA)                       :: 38
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 52 of 136
            Pseudo Genes (incomplete)         :: 79 of 136
            Pseudo Genes (internal stop)      :: 29 of 136
            Pseudo Genes (multiple problems)  :: 21 of 136
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303864
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03844"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-04-02"
WGS         JAOCDY010000001-JAOCDY010000117
WGS_SCAFLD  NZ_JAOCDY010000001-NZ_JAOCDY010000117
//
LOCUS       NZ_JBMGUW010000000   8650798 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces anulatus strain MR7S4, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBMGUW000000000
VERSION     NZ_JBMGUW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47510638
            Assembly: GCF_049058305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces anulatus
  ORGANISM  Streptomyces anulatus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces.
REFERENCE   1  (bases 1 to 8650798)
  AUTHORS   Abi Chahine,D., Awada,B., Derbaj,G., Hanna,A., Abou Fayad,A. and
            Kallassy,M.
  TITLE     A Novel Pyrazinone Derivative with anti- MRSA activity, produced by
            Streptomyces anulatus isolated from the rhizosphere of Malus
            Trilobata in Lebanon
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8650798)
  AUTHORS   Abi Chahine,D., Awada,B., Derbaj,G., Hanna,A., Abou Fayad,A. and
            Kallassy,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2025) Life science, Saint Joseph University of
            Beirut, Mar Roukoz, Mansourieh, Beirut 17-5208, Lebanon
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMGUW000000000.1.
            The Streptomyces anulatus whole genome shotgun (WGS) project has
            the project accession NZ_JBMGUW000000000.  This version of the
            project (01) has the accession number NZ_JBMGUW010000000, and
            consists of sequences JBMGUW010000001-JBMGUW010000016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from UR- Environment, Genomic and
            Proteomic.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2023
            Assembly Method        :: Unicycler v. 2.1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 40.0x
            Sequencing Technology  :: Illumina MiSeq,; Oxford Nanopore
                                      Technologies
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049058305.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:17:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,662
            CDSs (total)                      :: 7,573
            Genes (coding)                    :: 7,415
            CDSs (with protein)               :: 7,415
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 86 of 158
            Pseudo Genes (incomplete)         :: 100 of 158
            Pseudo Genes (internal stop)      :: 10 of 158
            Pseudo Genes (multiple problems)  :: 35 of 158
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8650798
                     /organism="Streptomyces anulatus"
                     /mol_type="genomic DNA"
                     /strain="MR7S4"
                     /isolation_source="Reserve"
                     /db_xref="taxon:1892"
                     /geo_loc_name="Lebanon: Ehden"
                     /lat_lon="34.2977 N 35.9666 E"
                     /collection_date="2017"
WGS         JBMGUW010000001-JBMGUW010000016
WGS_SCAFLD  NZ_JBMGUW010000001-NZ_JBMGUW010000016
//
LOCUS       NZ_JAOCGX010000000   3160896 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter junii strain GD03765, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOCGX000000000
VERSION     NZ_JAOCGX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525221
            Assembly: GCF_029842755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter junii (Acinetobacter grimontii)
  ORGANISM  Acinetobacter junii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3160896)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3160896)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCGX000000000.1.
            The Acinetobacter junii whole genome shotgun (WGS) project has the
            project accession NZ_JAOCGX000000000.  This version of the project
            (01) has the accession number NZ_JAOCGX010000000, and consists of
            sequences JAOCGX010000001-JAOCGX010000104.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.936x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029842755.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:37:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,031
            CDSs (total)                      :: 2,962
            Genes (coding)                    :: 2,865
            CDSs (with protein)               :: 2,865
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 97
            CDSs (without protein)            :: 97
            Pseudo Genes (ambiguous residues) :: 0 of 97
            Pseudo Genes (frameshifted)       :: 35 of 97
            Pseudo Genes (incomplete)         :: 44 of 97
            Pseudo Genes (internal stop)      :: 30 of 97
            Pseudo Genes (multiple problems)  :: 11 of 97
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160896
                     /organism="Acinetobacter junii"
                     /mol_type="genomic DNA"
                     /strain="GD03765"
                     /isolation_source="water"
                     /db_xref="taxon:40215"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCGX010000001-JAOCGX010000104
WGS_SCAFLD  NZ_JAOCGX010000001-NZ_JAOCGX010000104
//
LOCUS       NZ_JAOCDW010000000   3243061 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter junii strain GD03846, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOCDW000000000
VERSION     NZ_JAOCDW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525302
            Assembly: GCF_029841115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter junii (Acinetobacter grimontii)
  ORGANISM  Acinetobacter junii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3243061)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3243061)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCDW000000000.1.
            The Acinetobacter junii whole genome shotgun (WGS) project has the
            project accession NZ_JAOCDW000000000.  This version of the project
            (01) has the accession number NZ_JAOCDW010000000, and consists of
            sequences JAOCDW010000001-JAOCDW010000106.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029841115.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:30:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,077
            CDSs (total)                      :: 3,006
            Genes (coding)                    :: 2,897
            CDSs (with protein)               :: 2,897
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 109
            CDSs (without protein)            :: 109
            Pseudo Genes (ambiguous residues) :: 0 of 109
            Pseudo Genes (frameshifted)       :: 48 of 109
            Pseudo Genes (incomplete)         :: 47 of 109
            Pseudo Genes (internal stop)      :: 39 of 109
            Pseudo Genes (multiple problems)  :: 24 of 109
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243061
                     /organism="Acinetobacter junii"
                     /mol_type="genomic DNA"
                     /strain="GD03846"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40215"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-04-02"
WGS         JAOCDW010000001-JAOCDW010000106
WGS_SCAFLD  NZ_JAOCDW010000001-NZ_JAOCDW010000106
//
LOCUS       NZ_JBNBLQ010000000   8774343 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Streptomyces levis strain L2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBNBLQ000000000
VERSION     NZ_JBNBLQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47806252
            Assembly: GCF_049726105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Streptomyces levis
  ORGANISM  Streptomyces levis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Kitasatosporales; Streptomycetaceae; Streptomyces.
REFERENCE   1  (bases 1 to 8774343)
  AUTHORS   Tang,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-APR-2025) Molecular Microbiology, Hunan Institute of
            Microbiology, Xinkaipu Road No. 18, Changsha, Hunan 410009, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNBLQ000000000.1.
            The Streptomyces levis whole genome shotgun (WGS) project has the
            project accession NZ_JBNBLQ000000000.  This version of the project
            (01) has the accession number NZ_JBNBLQ010000000, and consists of
            sequences JBNBLQ010000001-JBNBLQ010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Hunan Institute of
            Microbiology.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 30-MAR-2020
            Assembly Method        :: unicycler v. 0.4.8
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.24x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049726105.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 15:55:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7,784
            CDSs (total)                      :: 7,695
            Genes (coding)                    :: 7,544
            CDSs (with protein)               :: 7,544
            Genes (RNA)                       :: 89
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 68
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 151
            CDSs (without protein)            :: 151
            Pseudo Genes (ambiguous residues) :: 0 of 151
            Pseudo Genes (frameshifted)       :: 69 of 151
            Pseudo Genes (incomplete)         :: 107 of 151
            Pseudo Genes (internal stop)      :: 11 of 151
            Pseudo Genes (multiple problems)  :: 34 of 151
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8774343
                     /organism="Streptomyces levis"
                     /mol_type="genomic DNA"
                     /strain="L2"
                     /isolation_source="root soil"
                     /host="Echinochloa crus-galli"
                     /db_xref="taxon:285566"
                     /geo_loc_name="China: Changsha"
                     /lat_lon="28.46858 N 113.21176 E"
                     /collection_date="2020-11-06"
WGS         JBNBLQ010000001-JBNBLQ010000005
WGS_SCAFLD  NZ_JBNBLQ010000001-NZ_JBNBLQ010000005
//
LOCUS       NZ_CBAGFP010000000   2703733 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Zwartia sp. isolate
            PELAGICS-MAG-vs-bin044714-BALM1-SM-06apr22., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBAGFP000000000
VERSION     NZ_CBAGFP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117460817
            Assembly: GCF_964702945.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Zwartia sp. (freshwater metagenome)
  ORGANISM  Zwartia sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Zwartia.
REFERENCE   1  (bases 1 to 2703733)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBAGFP000000000.1.
            The Zwartia sp. whole genome shotgun (WGS) project has the project
            accession NZ_CBAGFP000000000.  This version of the project (01) has
            the accession number NZ_CBAGFP010000000, and consists of sequences
            CBAGFP010000001-CBAGFP010000084.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964702945.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:42:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,663
            CDSs (total)                      :: 2,617
            Genes (coding)                    :: 2,591
            CDSs (with protein)               :: 2,591
            Genes (RNA)                       :: 46
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 39
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 2 of 26
            Pseudo Genes (incomplete)         :: 26 of 26
            Pseudo Genes (internal stop)      :: 1 of 26
            Pseudo Genes (multiple problems)  :: 3 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703733
                     /organism="Zwartia sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-vs-bin044714-BALM1-SM-06apr22."
                     /isolation_source="Balaton lake"
                     /db_xref="taxon:2978004"
                     /environmental_sample
                     /geo_loc_name="Hungary"
                     /collection_date="2022-04-06"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBAGFP010000001-CBAGFP010000084
WGS_SCAFLD  NZ_CBAGFP010000001-NZ_CBAGFP010000084
//
LOCUS       NZ_JAOCDA010000000   3458768 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter junii strain GD03870, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOCDA000000000
VERSION     NZ_JAOCDA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525326
            Assembly: GCF_029840725.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter junii (Acinetobacter grimontii)
  ORGANISM  Acinetobacter junii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3458768)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3458768)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCDA000000000.1.
            The Acinetobacter junii whole genome shotgun (WGS) project has the
            project accession NZ_JAOCDA000000000.  This version of the project
            (01) has the accession number NZ_JAOCDA010000000, and consists of
            sequences JAOCDA010000001-JAOCDA010000152.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.971x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029840725.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:39:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,376
            CDSs (total)                      :: 3,305
            Genes (coding)                    :: 3,145
            CDSs (with protein)               :: 3,145
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 160
            CDSs (without protein)            :: 160
            Pseudo Genes (ambiguous residues) :: 0 of 160
            Pseudo Genes (frameshifted)       :: 48 of 160
            Pseudo Genes (incomplete)         :: 90 of 160
            Pseudo Genes (internal stop)      :: 37 of 160
            Pseudo Genes (multiple problems)  :: 14 of 160
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3458768
                     /organism="Acinetobacter junii"
                     /mol_type="genomic DNA"
                     /strain="GD03870"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40215"
                     /geo_loc_name="USA"
                     /collection_date="2018-04-09"
WGS         JAOCDA010000001-JAOCDA010000152
WGS_SCAFLD  NZ_JAOCDA010000001-NZ_JAOCDA010000152
//
LOCUS       NZ_JAOCBN010000000   3857821 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter junii strain GD03910, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOCBN000000000
VERSION     NZ_JAOCBN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525366
            Assembly: GCF_029839935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter junii (Acinetobacter grimontii)
  ORGANISM  Acinetobacter junii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3857821)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3857821)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCBN000000000.1.
            The Acinetobacter junii whole genome shotgun (WGS) project has the
            project accession NZ_JAOCBN000000000.  This version of the project
            (01) has the accession number NZ_JAOCBN010000000, and consists of
            sequences JAOCBN010000001-JAOCBN010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.801x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029839935.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:39:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,773
            CDSs (total)                      :: 3,677
            Genes (coding)                    :: 3,511
            CDSs (with protein)               :: 3,511
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 64 of 166
            Pseudo Genes (incomplete)         :: 92 of 166
            Pseudo Genes (internal stop)      :: 35 of 166
            Pseudo Genes (multiple problems)  :: 24 of 166
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857821
                     /organism="Acinetobacter junii"
                     /mol_type="genomic DNA"
                     /strain="GD03910"
                     /isolation_source="water"
                     /db_xref="taxon:40215"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-05-01"
WGS         JAOCBN010000001-JAOCBN010000004
WGS_SCAFLD  NZ_JAOCBN010000001-NZ_JAOCBN010000004
//
LOCUS       NZ_JBWZOT010000000   2730730 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Vagococcus fluvialis strain WSBS-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JBWZOT000000000
VERSION     NZ_JBWZOT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57144005
            Assembly: GCF_056779675.1
KEYWORDS    WGS; RefSeq.
SOURCE      Vagococcus fluvialis
  ORGANISM  Vagococcus fluvialis
            Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales;
            Enterococcaceae; Vagococcus.
REFERENCE   1  (bases 1 to 2730730)
  AUTHORS   Heo,Y.R., Hong,W.H., Seok,S.H. and Kim,S.W.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) College of Veterinary Medicine & Institute
            of Veterinary Science, Kangwon National University, 1
            Kangwondaehak-gil, Chuncheon 24341, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBWZOT000000000.1.
            The Vagococcus fluvialis whole genome shotgun (WGS) project has the
            project accession NZ_JBWZOT000000000.  This version of the project
            (01) has the accession number NZ_JBWZOT010000000, and consists of
            sequences JBWZOT010000001-JBWZOT010000002.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: OCT-2025
            Assembly Method        :: Microbial Genome Analysis v. OCT-2025
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 262.07x
            Sequencing Technology  :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056779675.1-RS_2026_04_18
            Annotation Date                   :: 04/18/2026 13:48:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,738
            CDSs (total)                      :: 2,636
            Genes (coding)                    :: 2,599
            CDSs (with protein)               :: 2,599
            Genes (RNA)                       :: 102
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 17 of 37
            Pseudo Genes (incomplete)         :: 16 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 3 of 37
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2730730
                     /organism="Vagococcus fluvialis"
                     /mol_type="genomic DNA"
                     /strain="WSBS-1"
                     /host="Chiloscyllium punctatum"
                     /db_xref="taxon:2738"
                     /geo_loc_name="South Korea: Jeju"
                     /collection_date="2025-07-20"
WGS         JBWZOT010000001-JBWZOT010000002
WGS_SCAFLD  NZ_JBWZOT010000001-NZ_JBWZOT010000002
//
LOCUS       NZ_JAOCDR010000000   3574701 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03851, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCDR000000000
VERSION     NZ_JAOCDR000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525307
            Assembly: GCF_029841075.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3574701)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3574701)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCDR000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCDR000000000.  This version of the
            project (01) has the accession number NZ_JAOCDR010000000, and
            consists of sequences JAOCDR010000001-JAOCDR010000160.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.023x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029841075.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:38:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,546
            CDSs (total)                      :: 3,462
            Genes (coding)                    :: 3,342
            CDSs (with protein)               :: 3,342
            Genes (RNA)                       :: 84
            rRNAs                             :: 1, 1, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 4 (23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 41 of 120
            Pseudo Genes (incomplete)         :: 74 of 120
            Pseudo Genes (internal stop)      :: 26 of 120
            Pseudo Genes (multiple problems)  :: 18 of 120
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574701
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03851"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-04-02"
WGS         JAOCDR010000001-JAOCDR010000160
WGS_SCAFLD  NZ_JAOCDR010000001-NZ_JAOCDR010000160
//
LOCUS       NZ_JAOCBE010000000   3873808 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03920, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCBE000000000
VERSION     NZ_JAOCBE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525376
            Assembly: GCF_029839745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3873808)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3873808)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCBE000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCBE000000000.  This version of the
            project (01) has the accession number NZ_JAOCBE010000000, and
            consists of sequences JAOCBE010000001-JAOCBE010000006.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 74.859x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029839745.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:40:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,822
            CDSs (total)                      :: 3,715
            Genes (coding)                    :: 3,493
            CDSs (with protein)               :: 3,493
            Genes (RNA)                       :: 107
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 222
            CDSs (without protein)            :: 222
            Pseudo Genes (ambiguous residues) :: 0 of 222
            Pseudo Genes (frameshifted)       :: 83 of 222
            Pseudo Genes (incomplete)         :: 133 of 222
            Pseudo Genes (internal stop)      :: 49 of 222
            Pseudo Genes (multiple problems)  :: 39 of 222
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873808
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03920"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-05-01"
WGS         JAOCBE010000001-JAOCBE010000006
WGS_SCAFLD  NZ_JAOCBE010000001-NZ_JAOCBE010000006
//
LOCUS       NZ_JAOCFW010000000   3400702 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter junii strain GD03793, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOCFW000000000
VERSION     NZ_JAOCFW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525249
            Assembly: GCF_029842155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter junii (Acinetobacter grimontii)
  ORGANISM  Acinetobacter junii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3400702)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3400702)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCFW000000000.1.
            The Acinetobacter junii whole genome shotgun (WGS) project has the
            project accession NZ_JAOCFW000000000.  This version of the project
            (01) has the accession number NZ_JAOCFW010000000, and consists of
            sequences JAOCFW010000001-JAOCFW010000136.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.083x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029842155.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:36:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,292
            CDSs (total)                      :: 3,222
            Genes (coding)                    :: 3,040
            CDSs (with protein)               :: 3,040
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 182
            CDSs (without protein)            :: 182
            Pseudo Genes (ambiguous residues) :: 0 of 182
            Pseudo Genes (frameshifted)       :: 70 of 182
            Pseudo Genes (incomplete)         :: 90 of 182
            Pseudo Genes (internal stop)      :: 52 of 182
            Pseudo Genes (multiple problems)  :: 28 of 182
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3400702
                     /organism="Acinetobacter junii"
                     /mol_type="genomic DNA"
                     /strain="GD03793"
                     /isolation_source="water"
                     /db_xref="taxon:40215"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-04-02"
WGS         JAOCFW010000001-JAOCFW010000136
WGS_SCAFLD  NZ_JAOCFW010000001-NZ_JAOCFW010000136
//
LOCUS       NZ_JUZW01000000      6590018 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 618_AXYL, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUZW00000000
VERSION     NZ_JUZW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197818
            Assembly: GCF_001057605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6590018)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6590018)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUZW00000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JUZW00000000.  This version of the
            project (01) has the accession number NZ_JUZW01000000, and consists
            of sequences JUZW01000001-JUZW01000990.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 23x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001057605.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:18:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,719
            CDSs (total)                      :: 6,678
            Genes (coding)                    :: 6,423
            CDSs (with protein)               :: 6,423
            Genes (RNA)                       :: 41
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 255
            CDSs (without protein)            :: 255
            Pseudo Genes (ambiguous residues) :: 0 of 255
            Pseudo Genes (frameshifted)       :: 17 of 255
            Pseudo Genes (incomplete)         :: 237 of 255
            Pseudo Genes (internal stop)      :: 7 of 255
            Pseudo Genes (multiple problems)  :: 6 of 255
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6590018
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="618_AXYL"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUZW01000001-JUZW01000990
WGS_SCAFLD  NZ_JUZW01000001-NZ_JUZW01000990
//
LOCUS       NZ_JAOCFJ010000000   3541146 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter junii strain GD03806, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOCFJ000000000
VERSION     NZ_JAOCFJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525262
            Assembly: GCF_029841885.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter junii (Acinetobacter grimontii)
  ORGANISM  Acinetobacter junii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3541146)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3541146)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCFJ000000000.1.
            The Acinetobacter junii whole genome shotgun (WGS) project has the
            project accession NZ_JAOCFJ000000000.  This version of the project
            (01) has the accession number NZ_JAOCFJ010000000, and consists of
            sequences JAOCFJ010000001-JAOCFJ010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 71.503x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029841885.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:47:19
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,400
            CDSs (total)                      :: 3,304
            Genes (coding)                    :: 3,155
            CDSs (with protein)               :: 3,155
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 56 of 149
            Pseudo Genes (incomplete)         :: 76 of 149
            Pseudo Genes (internal stop)      :: 42 of 149
            Pseudo Genes (multiple problems)  :: 21 of 149
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541146
                     /organism="Acinetobacter junii"
                     /mol_type="genomic DNA"
                     /strain="GD03806"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40215"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-04-02"
WGS         JAOCFJ010000001-JAOCFJ010000004
WGS_SCAFLD  NZ_JAOCFJ010000001-NZ_JAOCFJ010000004
//
LOCUS       NZ_JAOCHY010000000   3693788 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03738, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCHY000000000
VERSION     NZ_JAOCHY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525194
            Assembly: GCF_029843265.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3693788)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3693788)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCHY000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCHY000000000.  This version of the
            project (01) has the accession number NZ_JAOCHY010000000, and
            consists of sequences JAOCHY010000001-JAOCHY010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.98x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029843265.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:50:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,577
            CDSs (total)                      :: 3,464
            Genes (coding)                    :: 3,277
            CDSs (with protein)               :: 3,277
            Genes (RNA)                       :: 113
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 187
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 78 of 187
            Pseudo Genes (incomplete)         :: 113 of 187
            Pseudo Genes (internal stop)      :: 29 of 187
            Pseudo Genes (multiple problems)  :: 28 of 187
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3693788
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03738"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCHY010000001-JAOCHY010000005
WGS_SCAFLD  NZ_JAOCHY010000001-NZ_JAOCHY010000005
//
LOCUS       NZ_JAOCGU010000000   3328790 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03768, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCGU000000000
VERSION     NZ_JAOCGU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525224
            Assembly: GCF_029842705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3328790)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3328790)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCGU000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCGU000000000.  This version of the
            project (01) has the accession number NZ_JAOCGU010000000, and
            consists of sequences JAOCGU010000001-JAOCGU010000085.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.865x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029842705.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:47:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,243
            CDSs (total)                      :: 3,161
            Genes (coding)                    :: 3,044
            CDSs (with protein)               :: 3,044
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 47 of 117
            Pseudo Genes (incomplete)         :: 56 of 117
            Pseudo Genes (internal stop)      :: 26 of 117
            Pseudo Genes (multiple problems)  :: 12 of 117
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328790
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03768"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCGU010000001-JAOCGU010000085
WGS_SCAFLD  NZ_JAOCGU010000001-NZ_JAOCGU010000085
//
LOCUS       NZ_JUZX01000000      6598350 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 617_AXYL, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JUZX00000000
VERSION     NZ_JUZX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03197817
            Assembly: GCF_001057595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6598350)
  AUTHORS   Roach,D.J., Burton,J.N., Lee,C., Stackhouse,B., Butler-Wu,S.M.,
            Cookson,B.T., Shendure,J. and Salipante,S.J.
  TITLE     A Year of Infection in the Intensive Care Unit: Prospective Whole
            Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic
            Transmissions and Novel Microbiota
  JOURNAL   PLoS Genet 11 (7), e1005413 (2015)
   PUBMED   26230489
  REMARK    Erratum:[PLoS Genet. 2017 Apr 14;13(4):e1006724. doi:
            10.1371/journal.pgen.1006724. PMID: 28410416]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6598350)
  AUTHORS   Salipante,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-NOV-2014) Laboratory Medicine, University of
            Washington, 1959 NE Pacific Street, Seattle, WA 98195, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JUZX00000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JUZX00000000.  This version of the
            project (01) has the accession number NZ_JUZX01000000, and consists
            of sequences JUZX01000001-JUZX01000803.
            Source DNA available from Steve Salipante, University of Washington
            Department of Laboratory Medicine, Box 357110, 1959 NE Pacific
            Street, NW120 Seattle, WA 98195-7110.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: ABYSS v. 1.3.5
            Genome Coverage       :: 31x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001057595.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:01:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,554
            CDSs (total)                      :: 6,511
            Genes (coding)                    :: 6,284
            CDSs (with protein)               :: 6,284
            Genes (RNA)                       :: 43
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 227
            CDSs (without protein)            :: 227
            Pseudo Genes (ambiguous residues) :: 0 of 227
            Pseudo Genes (frameshifted)       :: 16 of 227
            Pseudo Genes (incomplete)         :: 211 of 227
            Pseudo Genes (internal stop)      :: 6 of 227
            Pseudo Genes (multiple problems)  :: 6 of 227
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6598350
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="617_AXYL"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="USA: WA"
                     /collected_by="UW clinical laboratory"
WGS         JUZX01000001-JUZX01000803
WGS_SCAFLD  NZ_JUZX01000001-NZ_JUZX01000803
//
LOCUS       NZ_JAOCJF010000000   3201794 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter junii strain GD03703, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAOCJF000000000
VERSION     NZ_JAOCJF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525159
            Assembly: GCF_029843865.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter junii (Acinetobacter grimontii)
  ORGANISM  Acinetobacter junii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3201794)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3201794)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCJF000000000.1.
            The Acinetobacter junii whole genome shotgun (WGS) project has the
            project accession NZ_JAOCJF000000000.  This version of the project
            (01) has the accession number NZ_JAOCJF010000000, and consists of
            sequences JAOCJF010000001-JAOCJF010000114.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 94.154x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029843865.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:52:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,050
            CDSs (total)                      :: 2,982
            Genes (coding)                    :: 2,877
            CDSs (with protein)               :: 2,877
            Genes (RNA)                       :: 68
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 42 of 105
            Pseudo Genes (incomplete)         :: 44 of 105
            Pseudo Genes (internal stop)      :: 30 of 105
            Pseudo Genes (multiple problems)  :: 9 of 105
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201794
                     /organism="Acinetobacter junii"
                     /mol_type="genomic DNA"
                     /strain="GD03703"
                     /isolation_source="water"
                     /db_xref="taxon:40215"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCJF010000001-JAOCJF010000114
WGS_SCAFLD  NZ_JAOCJF010000001-NZ_JAOCJF010000114
//
LOCUS       NZ_JAALEO010000000   6437463 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter insolitus strain Kg 19, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAALEO000000000
VERSION     NZ_JAALEO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14167709
            Assembly: GCF_011063385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter insolitus
  ORGANISM  Achromobacter insolitus
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6437463)
  AUTHORS   Tarlachkov,S.V., Epiktetov,D.O., Sviridov,A.V., Shushkova,T.V.,
            Ermakova,I.T. and Leontievsky,A.A.
  TITLE     Draft genome sequence of glyphosate-degrading Achromobacter
            insolitus strain Kg 19 (VKM B-3295) isolated from agricultural soil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6437463)
  AUTHORS   Tarlachkov,S.V., Epiktetov,D.O., Sviridov,A.V., Shushkova,T.V.,
            Ermakova,I.T. and Leontievsky,A.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-FEB-2020) VKM, PSCBR RAS G.K. Skryabin Institute of
            Biochemistry and Physiology of Microorganisms RAS, pr. Nauki, 5,
            Pushchino, Moscow Region 142290, Russian Federation
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAALEO000000000.1.
            The Achromobacter insolitus whole genome shotgun (WGS) project has
            the project accession NZ_JAALEO000000000.  This version of the
            project (01) has the accession number NZ_JAALEO010000000, and
            consists of sequences JAALEO010000001-JAALEO010000043.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: FEB-2020
            Assembly Method        :: SPAdes v. 3.14.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 630.0x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011063385.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:18:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,034
            CDSs (total)                      :: 5,970
            Genes (coding)                    :: 5,943
            CDSs (with protein)               :: 5,943
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 27
            CDSs (without protein)            :: 27
            Pseudo Genes (ambiguous residues) :: 0 of 27
            Pseudo Genes (frameshifted)       :: 7 of 27
            Pseudo Genes (incomplete)         :: 20 of 27
            Pseudo Genes (internal stop)      :: 1 of 27
            Pseudo Genes (multiple problems)  :: 1 of 27
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6437463
                     /organism="Achromobacter insolitus"
                     /mol_type="genomic DNA"
                     /strain="Kg 19"
                     /isolation_source="agricultural soil"
                     /culture_collection="VKM:B-3295"
                     /db_xref="taxon:217204"
                     /geo_loc_name="Russia: Krasnodar Region"
                     /collection_date="2002-07-25"
WGS         JAALEO010000001-JAALEO010000043
WGS_SCAFLD  NZ_JAALEO010000001-NZ_JAALEO010000043
//
LOCUS       NZ_JAOCLE010000000   3550215 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03652, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCLE000000000
VERSION     NZ_JAOCLE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525108
            Assembly: GCF_029845145.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3550215)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3550215)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCLE000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCLE000000000.  This version of the
            project (01) has the accession number NZ_JAOCLE010000000, and
            consists of sequences JAOCLE010000001-JAOCLE010000126.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.979x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029845145.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:54:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,454
            CDSs (total)                      :: 3,373
            Genes (coding)                    :: 3,242
            CDSs (with protein)               :: 3,242
            Genes (RNA)                       :: 81
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 48 of 131
            Pseudo Genes (incomplete)         :: 80 of 131
            Pseudo Genes (internal stop)      :: 40 of 131
            Pseudo Genes (multiple problems)  :: 31 of 131
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3550215
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03652"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCLE010000001-JAOCLE010000126
WGS_SCAFLD  NZ_JAOCLE010000001-NZ_JAOCLE010000126
//
LOCUS       NZ_JAGFOP010000000   4271660 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter bereziniae strain AC15179, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGFOP000000000
VERSION     NZ_JAGFOP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18385669
            Assembly: GCF_017592385.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter bereziniae
  ORGANISM  Acinetobacter bereziniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4271660)
  AUTHORS   Mohd Rani,F.
  TITLE     Acinetobacter spp. whole-genome sequenced from Terengganu
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4271660)
  AUTHORS   Mohd Rani,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2021) Faculty of Medicine, Universiti Sultan
            Zainal Abidin, Jalan Sultan Mahmud, Kuala Terengganu 20400,
            Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGFOP000000000.1.
            The Acinetobacter bereziniae whole genome shotgun (WGS) project has
            the project accession NZ_JAGFOP000000000.  This version of the
            project (01) has the accession number NZ_JAGFOP010000000, and
            consists of sequences JAGFOP010000001-JAGFOP010000077.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017592385.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:47:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,036
            CDSs (total)                      :: 3,960
            Genes (coding)                    :: 3,897
            CDSs (with protein)               :: 3,897
            Genes (RNA)                       :: 76
            rRNAs                             :: 1, 2, 2 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 14 of 63
            Pseudo Genes (incomplete)         :: 46 of 63
            Pseudo Genes (internal stop)      :: 17 of 63
            Pseudo Genes (multiple problems)  :: 11 of 63
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4271660
                     /organism="Acinetobacter bereziniae"
                     /mol_type="genomic DNA"
                     /strain="AC15179"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:106648"
                     /geo_loc_name="Malaysia"
                     /lat_lon="5.325464 N 103.151674 E"
                     /collection_date="2015"
                     /collected_by="UniSZA"
WGS         JAGFOP010000001-JAGFOP010000077
WGS_SCAFLD  NZ_JAGFOP010000001-NZ_JAGFOP010000077
//
LOCUS       NZ_JAOCKH010000000   3639595 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03675, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKH000000000
VERSION     NZ_JAOCKH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525131
            Assembly: GCF_029844685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3639595)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3639595)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKH000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCKH000000000.  This version of the
            project (01) has the accession number NZ_JAOCKH010000000, and
            consists of sequences JAOCKH010000001-JAOCKH010000254.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 97.776x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844685.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:58:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,661
            CDSs (total)                      :: 3,578
            Genes (coding)                    :: 3,404
            CDSs (with protein)               :: 3,404
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 76
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 174
            CDSs (without protein)            :: 174
            Pseudo Genes (ambiguous residues) :: 0 of 174
            Pseudo Genes (frameshifted)       :: 52 of 174
            Pseudo Genes (incomplete)         :: 112 of 174
            Pseudo Genes (internal stop)      :: 41 of 174
            Pseudo Genes (multiple problems)  :: 26 of 174
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639595
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03675"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKH010000001-JAOCKH010000254
WGS_SCAFLD  NZ_JAOCKH010000001-NZ_JAOCKH010000254
//
LOCUS       NZ_JAGFOT010000000   3391506 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter haemolyticus strain AC1502, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGFOT000000000
VERSION     NZ_JAGFOT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18385665
            Assembly: GCF_017592465.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter haemolyticus
  ORGANISM  Acinetobacter haemolyticus
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3391506)
  AUTHORS   Mohd Rani,F.
  TITLE     Acinetobacter spp. whole-genome sequenced from Terengganu
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3391506)
  AUTHORS   Mohd Rani,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2021) Faculty of Medicine, Universiti Sultan
            Zainal Abidin, Jalan Sultan Mahmud, Kuala Terengganu 20400,
            Malaysia
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGFOT000000000.1.
            The Acinetobacter haemolyticus whole genome shotgun (WGS) project
            has the project accession NZ_JAGFOT000000000.  This version of the
            project (01) has the accession number NZ_JAGFOT010000000, and
            consists of sequences JAGFOT010000001-JAGFOT010000046.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 250x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017592465.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:41:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,185
            CDSs (total)                      :: 3,115
            Genes (coding)                    :: 3,065
            CDSs (with protein)               :: 3,065
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 16 of 50
            Pseudo Genes (incomplete)         :: 34 of 50
            Pseudo Genes (internal stop)      :: 8 of 50
            Pseudo Genes (multiple problems)  :: 8 of 50
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391506
                     /organism="Acinetobacter haemolyticus"
                     /mol_type="genomic DNA"
                     /strain="AC1502"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:29430"
                     /geo_loc_name="Malaysia"
                     /lat_lon="5.325464 N 103.151674 E"
                     /collection_date="2015"
                     /collected_by="UniSZA"
WGS         JAGFOT010000001-JAGFOT010000046
WGS_SCAFLD  NZ_JAGFOT010000001-NZ_JAGFOT010000046
//
LOCUS       NZ_JARVZO010000000   3833420 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter nosocomialis strain PUMA0046, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARVZO000000000
VERSION     NZ_JARVZO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34163914
            Assembly: GCF_029847615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter nosocomialis
  ORGANISM  Acinetobacter nosocomialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3833420)
  AUTHORS   Wee,S.K., Khoo,E.Z.Y., Yeoh,A., Al-Hakim,M.T., Tan,S.E.K.,
            Lim,X.W., Wong,R.W.L. and Yap,E.P.H.
  TITLE     Whole genome sequencing of environmental Acinetobacter baumannii
            from non-hospital environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3833420)
  AUTHORS   Wee,S.K., Khoo,E.Z.Y., Yeoh,A., Al-Hakim,M.T., Tan,S.E.K.,
            Lim,X.W., Wong,R.W.L. and Yap,E.P.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2023) Lee Kong Chian School of Medicine, Nanyang
            Technological University, 59 Nanyang Drive, Singapore 636921,
            Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARVZO000000000.1.
            The Acinetobacter nosocomialis whole genome shotgun (WGS) project
            has the project accession NZ_JARVZO000000000.  This version of the
            project (01) has the accession number NZ_JARVZO010000000, and
            consists of sequences JARVZO010000001-JARVZO010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 07-MAR-2023
            Assembly Method        :: Unicycler v. 0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 327x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029847615.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:01:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,667
            CDSs (total)                      :: 3,593
            Genes (coding)                    :: 3,529
            CDSs (with protein)               :: 3,529
            Genes (RNA)                       :: 74
            rRNAs                             :: 1, 4, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 4, 2 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 24 of 64
            Pseudo Genes (incomplete)         :: 41 of 64
            Pseudo Genes (internal stop)      :: 7 of 64
            Pseudo Genes (multiple problems)  :: 8 of 64
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3833420
                     /organism="Acinetobacter nosocomialis"
                     /mol_type="genomic DNA"
                     /strain="PUMA0046"
                     /db_xref="taxon:106654"
                     /collection_date="2022-12-14"
                     /collected_by="LKCMedicine, Nanyang Technological
                     University"
WGS         JARVZO010000001-JARVZO010000073
WGS_SCAFLD  NZ_JARVZO010000001-NZ_JARVZO010000073
//
LOCUS       NZ_JARVZB010000000   3950213 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter nosocomialis strain PUMA0033, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JARVZB000000000
VERSION     NZ_JARVZB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34163901
            Assembly: GCF_029847875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter nosocomialis
  ORGANISM  Acinetobacter nosocomialis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3950213)
  AUTHORS   Wee,S.K., Khoo,E.Z.Y., Yeoh,A., Al-Hakim,M.T., Tan,S.E.K.,
            Lim,X.W., Wong,R.W.L. and Yap,E.P.H.
  TITLE     Whole genome sequencing of environmental Acinetobacter baumannii
            from non-hospital environment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3950213)
  AUTHORS   Wee,S.K., Khoo,E.Z.Y., Yeoh,A., Al-Hakim,M.T., Tan,S.E.K.,
            Lim,X.W., Wong,R.W.L. and Yap,E.P.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2023) Lee Kong Chian School of Medicine, Nanyang
            Technological University, 59 Nanyang Drive, Singapore 636921,
            Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JARVZB000000000.1.
            The Acinetobacter nosocomialis whole genome shotgun (WGS) project
            has the project accession NZ_JARVZB000000000.  This version of the
            project (01) has the accession number NZ_JARVZB010000000, and
            consists of sequences JARVZB010000001-JARVZB010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 07-MAR-2023
            Assembly Method        :: Unicycler v. 0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 275x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029847875.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:05:48
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,774
            CDSs (total)                      :: 3,704
            Genes (coding)                    :: 3,654
            CDSs (with protein)               :: 3,654
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 50
            CDSs (without protein)            :: 50
            Pseudo Genes (ambiguous residues) :: 0 of 50
            Pseudo Genes (frameshifted)       :: 21 of 50
            Pseudo Genes (incomplete)         :: 26 of 50
            Pseudo Genes (internal stop)      :: 12 of 50
            Pseudo Genes (multiple problems)  :: 9 of 50
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950213
                     /organism="Acinetobacter nosocomialis"
                     /mol_type="genomic DNA"
                     /strain="PUMA0033"
                     /db_xref="taxon:106654"
                     /collection_date="2022-12-13"
                     /collected_by="LKCMedicine, Nanyang Technological
                     University"
WGS         JARVZB010000001-JARVZB010000026
WGS_SCAFLD  NZ_JARVZB010000001-NZ_JARVZB010000026
//
LOCUS       NZ_JAJLQB010000000   6557338 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2014Y70533463, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQB000000000
VERSION     NZ_JAJLQB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379551
            Assembly: GCF_022524985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6557338)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6557338)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQB000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQB000000000.  This version of the
            project (01) has the accession number NZ_JAJLQB010000000, and
            consists of sequences JAJLQB010000001-JAJLQB010000609.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524985.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:05:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,230
            CDSs (total)                      :: 6,174
            Genes (coding)                    :: 5,980
            CDSs (with protein)               :: 5,980
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 16 of 194
            Pseudo Genes (frameshifted)       :: 72 of 194
            Pseudo Genes (incomplete)         :: 98 of 194
            Pseudo Genes (internal stop)      :: 15 of 194
            Pseudo Genes (multiple problems)  :: 7 of 194
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6557338
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2014Y70533463"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2014"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQB010000001-JAJLQB010000609
WGS_SCAFLD  NZ_JAJLQB010000001-NZ_JAJLQB010000609
//
LOCUS       NZ_CBCBQI010000000   3258482 bp    DNA     linear   ENV 20-APR-2026
DEFINITION  MAG: Acinetobacter sp. isolate
            PELAGICS-MAG-m2-bin101400-ATTRH-SM-16jul20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCBQI000000000
VERSION     NZ_CBCBQI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459647
            Assembly: GCF_965023295.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Acinetobacter sp. (freshwater metagenome)
  ORGANISM  Acinetobacter sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3258482)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCBQI000000000.1.
            The Acinetobacter sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCBQI000000000.  This version of the project
            (01) has the accession number NZ_CBCBQI010000000, and consists of
            sequences CBCBQI010000001-CBCBQI010000335.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965023295.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:27:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,397
            CDSs (total)                      :: 3,340
            Genes (coding)                    :: 3,184
            CDSs (with protein)               :: 3,184
            Genes (RNA)                       :: 57
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 53
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 17 of 156
            Pseudo Genes (incomplete)         :: 127 of 156
            Pseudo Genes (internal stop)      :: 22 of 156
            Pseudo Genes (multiple problems)  :: 8 of 156
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258482
                     /organism="Acinetobacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin101400-ATTRH-SM-16jul20."
                     /isolation_source="Attersee lake"
                     /db_xref="taxon:472"
                     /environmental_sample
                     /geo_loc_name="Austria"
                     /collection_date="2020-07-16"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCBQI010000001-CBCBQI010000335
WGS_SCAFLD  NZ_CBCBQI010000001-NZ_CBCBQI010000335
//
LOCUS       NZ_JAJLPP010000000   6617266 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2010Ycf753III, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLPP000000000
VERSION     NZ_JAJLPP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379539
            Assembly: GCF_022525245.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6617266)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6617266)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPP000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPP000000000.  This version of the
            project (01) has the accession number NZ_JAJLPP010000000, and
            consists of sequences JAJLPP010000001-JAJLPP010001062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525245.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:11:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,505
            CDSs (total)                      :: 6,442
            Genes (coding)                    :: 6,145
            CDSs (with protein)               :: 6,145
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 297
            CDSs (without protein)            :: 297
            Pseudo Genes (ambiguous residues) :: 27 of 297
            Pseudo Genes (frameshifted)       :: 65 of 297
            Pseudo Genes (incomplete)         :: 205 of 297
            Pseudo Genes (internal stop)      :: 12 of 297
            Pseudo Genes (multiple problems)  :: 10 of 297
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6617266
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2010Ycf753III"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2010"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPP010000001-JAJLPP010001062
WGS_SCAFLD  NZ_JAJLPP010000001-NZ_JAJLPP010001062
//
LOCUS       NZ_JAOCLH010000000   3562734 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03649, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCLH000000000
VERSION     NZ_JAOCLH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525105
            Assembly: GCF_029845205.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3562734)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3562734)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCLH000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCLH000000000.  This version of the
            project (01) has the accession number NZ_JAOCLH010000000, and
            consists of sequences JAOCLH010000001-JAOCLH010000115.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76.202x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029845205.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:44:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,455
            CDSs (total)                      :: 3,375
            Genes (coding)                    :: 3,240
            CDSs (with protein)               :: 3,240
            Genes (RNA)                       :: 80
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 52 of 135
            Pseudo Genes (incomplete)         :: 79 of 135
            Pseudo Genes (internal stop)      :: 40 of 135
            Pseudo Genes (multiple problems)  :: 30 of 135
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3562734
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03649"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCLH010000001-JAOCLH010000115
WGS_SCAFLD  NZ_JAOCLH010000001-NZ_JAOCLH010000115
//
LOCUS       NZ_JBXAUG010000000   3815964 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Acinetobacter pittii strain 66443375, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUG000000000
VERSION     NZ_JBXAUG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137469
            Assembly: GCF_056781595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter pittii
  ORGANISM  Acinetobacter pittii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3815964)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUG000000000.1.
            The Acinetobacter pittii whole genome shotgun (WGS) project has the
            project accession NZ_JBXAUG000000000.  This version of the project
            (01) has the accession number NZ_JBXAUG010000000, and consists of
            sequences JBXAUG010000001-JBXAUG010000084.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 78x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781595.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:01:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,682
            CDSs (total)                      :: 3,610
            Genes (coding)                    :: 3,529
            CDSs (with protein)               :: 3,529
            Genes (RNA)                       :: 72
            rRNAs                             :: 1, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 63
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 30 of 81
            Pseudo Genes (incomplete)         :: 43 of 81
            Pseudo Genes (internal stop)      :: 12 of 81
            Pseudo Genes (multiple problems)  :: 3 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3815964
                     /organism="Acinetobacter pittii"
                     /mol_type="genomic DNA"
                     /strain="66443375"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:48296"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2017-04-18"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUG010000001-JBXAUG010000084
WGS_SCAFLD  NZ_JBXAUG010000001-NZ_JBXAUG010000084
//
LOCUS       NZ_JAJLQE010000000   6600246 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2015Y70661661I, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQE000000000
VERSION     NZ_JAJLQE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379554
            Assembly: GCF_022524945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6600246)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6600246)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQE000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQE000000000.  This version of the
            project (01) has the accession number NZ_JAJLQE010000000, and
            consists of sequences JAJLQE010000001-JAJLQE010000723.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524945.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:17:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,315
            CDSs (total)                      :: 6,258
            Genes (coding)                    :: 6,011
            CDSs (with protein)               :: 6,011
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 247
            CDSs (without protein)            :: 247
            Pseudo Genes (ambiguous residues) :: 33 of 247
            Pseudo Genes (frameshifted)       :: 73 of 247
            Pseudo Genes (incomplete)         :: 150 of 247
            Pseudo Genes (internal stop)      :: 10 of 247
            Pseudo Genes (multiple problems)  :: 18 of 247
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6600246
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2015Y70661661I"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2015"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQE010000001-JAJLQE010000723
WGS_SCAFLD  NZ_JAJLQE010000001-NZ_JAJLQE010000723
//
LOCUS       NZ_JAJLPL010000000   6611836 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2010Ycf152, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJLPL000000000
VERSION     NZ_JAJLPL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379535
            Assembly: GCF_022525315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6611836)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6611836)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPL000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPL000000000.  This version of the
            project (01) has the accession number NZ_JAJLPL010000000, and
            consists of sequences JAJLPL010000001-JAJLPL010000601.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525315.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:12:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,290
            CDSs (total)                      :: 6,235
            Genes (coding)                    :: 6,031
            CDSs (with protein)               :: 6,031
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 48
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 204
            CDSs (without protein)            :: 204
            Pseudo Genes (ambiguous residues) :: 19 of 204
            Pseudo Genes (frameshifted)       :: 69 of 204
            Pseudo Genes (incomplete)         :: 119 of 204
            Pseudo Genes (internal stop)      :: 11 of 204
            Pseudo Genes (multiple problems)  :: 13 of 204
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6611836
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2010Ycf152"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2010"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPL010000001-JAJLPL010000601
WGS_SCAFLD  NZ_JAJLPL010000001-NZ_JAJLPL010000601
//
LOCUS       NZ_JAJLQP010000000   6391359 bp    DNA     linear   BCT 20-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2017Y71053325, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQP000000000
VERSION     NZ_JAJLQP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379565
            Assembly: GCF_022524625.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6391359)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6391359)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQP000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQP000000000.  This version of the
            project (01) has the accession number NZ_JAJLQP010000000, and
            consists of sequences JAJLQP010000001-JAJLQP010000713.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524625.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:13:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,182
            CDSs (total)                      :: 6,122
            Genes (coding)                    :: 5,901
            CDSs (with protein)               :: 5,901
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 221
            CDSs (without protein)            :: 221
            Pseudo Genes (ambiguous residues) :: 16 of 221
            Pseudo Genes (frameshifted)       :: 69 of 221
            Pseudo Genes (incomplete)         :: 134 of 221
            Pseudo Genes (internal stop)      :: 8 of 221
            Pseudo Genes (multiple problems)  :: 6 of 221
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6391359
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2017Y71053325"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2017"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQP010000001-JAJLQP010000713
WGS_SCAFLD  NZ_JAJLQP010000001-NZ_JAJLQP010000713
//
LOCUS       NZ_JAJLPN010000000   6748658 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2010Ycf408V, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAJLPN000000000
VERSION     NZ_JAJLPN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379537
            Assembly: GCF_022525285.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6748658)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6748658)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLPN000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLPN000000000.  This version of the
            project (01) has the accession number NZ_JAJLPN010000000, and
            consists of sequences JAJLPN010000001-JAJLPN010000758.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525285.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:20:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,543
            CDSs (total)                      :: 6,480
            Genes (coding)                    :: 6,313
            CDSs (with protein)               :: 6,313
            Genes (RNA)                       :: 63
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 167
            CDSs (without protein)            :: 167
            Pseudo Genes (ambiguous residues) :: 12 of 167
            Pseudo Genes (frameshifted)       :: 19 of 167
            Pseudo Genes (incomplete)         :: 137 of 167
            Pseudo Genes (internal stop)      :: 6 of 167
            Pseudo Genes (multiple problems)  :: 7 of 167
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6748658
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2010Ycf408V"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2010"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLPN010000001-JAJLPN010000758
WGS_SCAFLD  NZ_JAJLPN010000001-NZ_JAJLPN010000758
//
LOCUS       NZ_JAJLQG010000000   6617266 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2015Y70723442II, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQG000000000
VERSION     NZ_JAJLQG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379556
            Assembly: GCF_022524925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6617266)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6617266)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQG000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQG000000000.  This version of the
            project (01) has the accession number NZ_JAJLQG010000000, and
            consists of sequences JAJLQG010000001-JAJLQG010001062.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022524925.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:20:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,505
            CDSs (total)                      :: 6,442
            Genes (coding)                    :: 6,145
            CDSs (with protein)               :: 6,145
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 297
            CDSs (without protein)            :: 297
            Pseudo Genes (ambiguous residues) :: 27 of 297
            Pseudo Genes (frameshifted)       :: 65 of 297
            Pseudo Genes (incomplete)         :: 205 of 297
            Pseudo Genes (internal stop)      :: 12 of 297
            Pseudo Genes (multiple problems)  :: 10 of 297
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6617266
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2015Y70723442II"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2015"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQG010000001-JAJLQG010001062
WGS_SCAFLD  NZ_JAJLQG010000001-NZ_JAJLQG010001062
//
LOCUS       NZ_JAJLQC010000000   6601391 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter xylosoxidans strain 2014Y70566266III, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JAJLQC000000000
VERSION     NZ_JAJLQC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23379552
            Assembly: GCF_022525015.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6601391)
  AUTHORS   Chalhoub,H., Kampmeier,S., Kahl,B.C. and Van Bambeke,F.
  TITLE     Role of efflux and target mutations in antibiotic resistance of
            Achromobacter isolates from patients with cystic fibrosis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6601391)
  AUTHORS   Kampmeier,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2021) Institute of Hygiene, University Hospital
            Muenster, Robert-Koch-Strasse 41, Muenster 48159, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAJLQC000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAJLQC000000000.  This version of the
            project (01) has the accession number NZ_JAJLQC010000000, and
            consists of sequences JAJLQC010000001-JAJLQC010000764.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Velvet v. 1.1.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 180x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022525015.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:23:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,340
            CDSs (total)                      :: 6,284
            Genes (coding)                    :: 6,055
            CDSs (with protein)               :: 6,055
            Genes (RNA)                       :: 56
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 229
            CDSs (without protein)            :: 229
            Pseudo Genes (ambiguous residues) :: 20 of 229
            Pseudo Genes (frameshifted)       :: 73 of 229
            Pseudo Genes (incomplete)         :: 144 of 229
            Pseudo Genes (internal stop)      :: 9 of 229
            Pseudo Genes (multiple problems)  :: 16 of 229
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6601391
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="2014Y70566266III"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:85698"
                     /geo_loc_name="Germany: Muenster"
                     /lat_lon="51.96 N 7.61 E"
                     /collection_date="2014"
                     /collected_by="Institute of Medical Microbiology,
                     University Hospital Muenster, Germany"
WGS         JAJLQC010000001-JAJLQC010000764
WGS_SCAFLD  NZ_JAJLQC010000001-NZ_JAJLQC010000764
//
LOCUS       NZ_JAOEEO010000000   3884406 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter courvalinii strain GD04005, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEEO000000000
VERSION     NZ_JAOEEO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525461
            Assembly: GCF_029837855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter courvalinii
  ORGANISM  Acinetobacter courvalinii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3884406)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3884406)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEEO000000000.1.
            The Acinetobacter courvalinii whole genome shotgun (WGS) project
            has the project accession NZ_JAOEEO000000000.  This version of the
            project (01) has the accession number NZ_JAOEEO010000000, and
            consists of sequences JAOEEO010000001-JAOEEO010000018.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.781x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837855.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:26:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,720
            CDSs (total)                      :: 3,650
            Genes (coding)                    :: 3,604
            CDSs (with protein)               :: 3,604
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 22 of 46
            Pseudo Genes (incomplete)         :: 29 of 46
            Pseudo Genes (internal stop)      :: 8 of 46
            Pseudo Genes (multiple problems)  :: 10 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3884406
                     /organism="Acinetobacter courvalinii"
                     /mol_type="genomic DNA"
                     /strain="GD04005"
                     /isolation_source="surface swab"
                     /db_xref="taxon:280147"
                     /geo_loc_name="USA"
                     /collection_date="2018-05-14"
WGS         JAOEEO010000001-JAOEEO010000018
WGS_SCAFLD  NZ_JAOEEO010000001-NZ_JAOEEO010000018
//
LOCUS       NZ_JAOCIS010000000   3696523 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03717, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCIS000000000
VERSION     NZ_JAOCIS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525173
            Assembly: GCF_029843655.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3696523)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3696523)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCIS000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCIS000000000.  This version of the
            project (01) has the accession number NZ_JAOCIS010000000, and
            consists of sequences JAOCIS010000001-JAOCIS010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80.436x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029843655.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:46:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,580
            CDSs (total)                      :: 3,467
            Genes (coding)                    :: 3,278
            CDSs (with protein)               :: 3,278
            Genes (RNA)                       :: 113
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 189
            CDSs (without protein)            :: 189
            Pseudo Genes (ambiguous residues) :: 0 of 189
            Pseudo Genes (frameshifted)       :: 78 of 189
            Pseudo Genes (incomplete)         :: 115 of 189
            Pseudo Genes (internal stop)      :: 29 of 189
            Pseudo Genes (multiple problems)  :: 28 of 189
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3696523
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03717"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCIS010000001-JAOCIS010000005
WGS_SCAFLD  NZ_JAOCIS010000001-NZ_JAOCIS010000005
//
LOCUS       NZ_JAOCHF010000000   3329177 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter johnsonii strain GD03757, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCHF000000000
VERSION     NZ_JAOCHF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525213
            Assembly: GCF_029842835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter johnsonii
  ORGANISM  Acinetobacter johnsonii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3329177)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3329177)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCHF000000000.1.
            The Acinetobacter johnsonii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCHF000000000.  This version of the
            project (01) has the accession number NZ_JAOCHF010000000, and
            consists of sequences JAOCHF010000001-JAOCHF010000091.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 96.854x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029842835.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:49:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,221
            CDSs (total)                      :: 3,149
            Genes (coding)                    :: 3,055
            CDSs (with protein)               :: 3,055
            Genes (RNA)                       :: 72
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 94
            CDSs (without protein)            :: 94
            Pseudo Genes (ambiguous residues) :: 0 of 94
            Pseudo Genes (frameshifted)       :: 45 of 94
            Pseudo Genes (incomplete)         :: 34 of 94
            Pseudo Genes (internal stop)      :: 33 of 94
            Pseudo Genes (multiple problems)  :: 15 of 94
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329177
                     /organism="Acinetobacter johnsonii"
                     /mol_type="genomic DNA"
                     /strain="GD03757"
                     /isolation_source="surface swab"
                     /db_xref="taxon:40214"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCHF010000001-JAOCHF010000091
WGS_SCAFLD  NZ_JAOCHF010000001-NZ_JAOCHF010000091
//
LOCUS       NZ_JAOEEI010000000   7116613 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter xylosoxidans strain GD04011, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEEI000000000
VERSION     NZ_JAOEEI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525467
            Assembly: GCF_029837755.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 7116613)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7116613)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEEI000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAOEEI000000000.  This version of the
            project (01) has the accession number NZ_JAOEEI010000000, and
            consists of sequences JAOEEI010000001-JAOEEI010000106.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 37.621x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837755.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:57:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,748
            CDSs (total)                      :: 6,684
            Genes (coding)                    :: 6,610
            CDSs (with protein)               :: 6,610
            Genes (RNA)                       :: 64
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 18 of 74
            Pseudo Genes (incomplete)         :: 60 of 74
            Pseudo Genes (internal stop)      :: 4 of 74
            Pseudo Genes (multiple problems)  :: 8 of 74
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7116613
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="GD04011"
                     /isolation_source="surface swab"
                     /db_xref="taxon:85698"
                     /geo_loc_name="USA"
                     /collection_date="2018-05-14"
WGS         JAOEEI010000001-JAOEEI010000106
WGS_SCAFLD  NZ_JAOEEI010000001-NZ_JAOEEI010000106
//
LOCUS       NZ_JAOEEL010000000   7089807 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter xylosoxidans strain GD04008, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEEL000000000
VERSION     NZ_JAOEEL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525464
            Assembly: GCF_029837835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter xylosoxidans
  ORGANISM  Achromobacter xylosoxidans
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 7089807)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7089807)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEEL000000000.1.
            The Achromobacter xylosoxidans whole genome shotgun (WGS) project
            has the project accession NZ_JAOEEL000000000.  This version of the
            project (01) has the accession number NZ_JAOEEL010000000, and
            consists of sequences JAOEEL010000001-JAOEEL010000107.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 44.867x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837835.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:02:06
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,729
            CDSs (total)                      :: 6,664
            Genes (coding)                    :: 6,592
            CDSs (with protein)               :: 6,592
            Genes (RNA)                       :: 65
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 17 of 72
            Pseudo Genes (incomplete)         :: 58 of 72
            Pseudo Genes (internal stop)      :: 3 of 72
            Pseudo Genes (multiple problems)  :: 6 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7089807
                     /organism="Achromobacter xylosoxidans"
                     /mol_type="genomic DNA"
                     /strain="GD04008"
                     /isolation_source="surface swab"
                     /db_xref="taxon:85698"
                     /geo_loc_name="USA"
                     /collection_date="2018-05-14"
WGS         JAOEEL010000001-JAOEEL010000107
WGS_SCAFLD  NZ_JAOEEL010000001-NZ_JAOEEL010000107
//
LOCUS       NZ_JAOEDF010000000   6366878 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter mucicolens strain GD04040, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEDF000000000
VERSION     NZ_JAOEDF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525496
            Assembly: GCF_029837185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter mucicolens
  ORGANISM  Achromobacter mucicolens
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6366878)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6366878)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEDF000000000.1.
            The Achromobacter mucicolens whole genome shotgun (WGS) project has
            the project accession NZ_JAOEDF000000000.  This version of the
            project (01) has the accession number NZ_JAOEDF010000000, and
            consists of sequences JAOEDF010000001-JAOEDF010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39.809x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837185.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:46:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,899
            CDSs (total)                      :: 5,840
            Genes (coding)                    :: 5,799
            CDSs (with protein)               :: 5,799
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 12 of 41
            Pseudo Genes (incomplete)         :: 31 of 41
            Pseudo Genes (internal stop)      :: 2 of 41
            Pseudo Genes (multiple problems)  :: 4 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6366878
                     /organism="Achromobacter mucicolens"
                     /mol_type="genomic DNA"
                     /strain="GD04040"
                     /isolation_source="surface swab"
                     /db_xref="taxon:1389922"
                     /geo_loc_name="USA"
                     /collection_date="2018-06-04"
WGS         JAOEDF010000001-JAOEDF010000074
WGS_SCAFLD  NZ_JAOEDF010000001-NZ_JAOEDF010000074
//
LOCUS       NZ_JAOCDN010000000   6246403 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter animicus strain GD03857, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCDN000000000
VERSION     NZ_JAOCDN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525313
            Assembly: GCF_029840945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter animicus
  ORGANISM  Achromobacter animicus
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6246403)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6246403)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCDN000000000.1.
            The Achromobacter animicus whole genome shotgun (WGS) project has
            the project accession NZ_JAOCDN000000000.  This version of the
            project (01) has the accession number NZ_JAOCDN010000000, and
            consists of sequences JAOCDN010000001-JAOCDN010000057.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 78.547x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029840945.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:06:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,764
            CDSs (total)                      :: 5,701
            Genes (coding)                    :: 5,636
            CDSs (with protein)               :: 5,636
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 65
            CDSs (without protein)            :: 65
            Pseudo Genes (ambiguous residues) :: 0 of 65
            Pseudo Genes (frameshifted)       :: 18 of 65
            Pseudo Genes (incomplete)         :: 48 of 65
            Pseudo Genes (internal stop)      :: 6 of 65
            Pseudo Genes (multiple problems)  :: 7 of 65
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6246403
                     /organism="Achromobacter animicus"
                     /mol_type="genomic DNA"
                     /strain="GD03857"
                     /isolation_source="surface swab"
                     /db_xref="taxon:1389935"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-04-02"
WGS         JAOCDN010000001-JAOCDN010000057
WGS_SCAFLD  NZ_JAOCDN010000001-NZ_JAOCDN010000057
//
LOCUS       NZ_JAOBZK010000000   6275439 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter mucicolens strain GD03967, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOBZK000000000
VERSION     NZ_JAOBZK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525423
            Assembly: GCF_029838805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter mucicolens
  ORGANISM  Achromobacter mucicolens
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6275439)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6275439)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOBZK000000000.1.
            The Achromobacter mucicolens whole genome shotgun (WGS) project has
            the project accession NZ_JAOBZK000000000.  This version of the
            project (01) has the accession number NZ_JAOBZK010000000, and
            consists of sequences JAOBZK010000001-JAOBZK010000151.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 79.333x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029838805.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:04:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,886
            CDSs (total)                      :: 5,824
            Genes (coding)                    :: 5,775
            CDSs (with protein)               :: 5,775
            Genes (RNA)                       :: 62
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 10 of 49
            Pseudo Genes (incomplete)         :: 41 of 49
            Pseudo Genes (internal stop)      :: 5 of 49
            Pseudo Genes (multiple problems)  :: 6 of 49
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6275439
                     /organism="Achromobacter mucicolens"
                     /mol_type="genomic DNA"
                     /strain="GD03967"
                     /isolation_source="surface swab"
                     /db_xref="taxon:1389922"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-05-01"
WGS         JAOBZK010000001-JAOBZK010000151
WGS_SCAFLD  NZ_JAOBZK010000001-NZ_JAOBZK010000151
//
LOCUS       NZ_JAOCDZ010000000   6934186 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter spanius strain GD03843, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCDZ000000000
VERSION     NZ_JAOCDZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525299
            Assembly: GCF_029841185.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter spanius
  ORGANISM  Achromobacter spanius
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6934186)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6934186)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCDZ000000000.1.
            The Achromobacter spanius whole genome shotgun (WGS) project has
            the project accession NZ_JAOCDZ000000000.  This version of the
            project (01) has the accession number NZ_JAOCDZ010000000, and
            consists of sequences JAOCDZ010000001-JAOCDZ010000073.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 56.604x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029841185.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:08:39
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,387
            CDSs (total)                      :: 6,324
            Genes (coding)                    :: 6,270
            CDSs (with protein)               :: 6,270
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 15 of 54
            Pseudo Genes (incomplete)         :: 43 of 54
            Pseudo Genes (internal stop)      :: 8 of 54
            Pseudo Genes (multiple problems)  :: 10 of 54
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6934186
                     /organism="Achromobacter spanius"
                     /mol_type="genomic DNA"
                     /strain="GD03843"
                     /isolation_source="surface swab"
                     /db_xref="taxon:217203"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-04-02"
WGS         JAOCDZ010000001-JAOCDZ010000073
WGS_SCAFLD  NZ_JAOCDZ010000001-NZ_JAOCDZ010000073
//
LOCUS       NZ_CBAPRH010000000   3415035 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aquidulcibacter sp. isolate
            PELAGICS-MAG-vs-bin050780-ZLUTE-LM-11aug20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBAPRH000000000
VERSION     NZ_CBAPRH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117461382
            Assembly: GCF_964766805.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aquidulcibacter sp. (freshwater metagenome)
  ORGANISM  Aquidulcibacter sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Caulobacterales; Caulobacteraceae; Aquidulcibacter.
REFERENCE   1  (bases 1 to 3415035)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBAPRH000000000.1.
            The Aquidulcibacter sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBAPRH000000000.  This version of the project
            (01) has the accession number NZ_CBAPRH010000000, and consists of
            sequences CBAPRH010000001-CBAPRH010000053.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964766805.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 01:12:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,184
            CDSs (total)                      :: 3,136
            Genes (coding)                    :: 3,120
            CDSs (with protein)               :: 3,120
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 16
            CDSs (without protein)            :: 16
            Pseudo Genes (ambiguous residues) :: 0 of 16
            Pseudo Genes (frameshifted)       :: 0 of 16
            Pseudo Genes (incomplete)         :: 15 of 16
            Pseudo Genes (internal stop)      :: 1 of 16
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415035
                     /organism="Aquidulcibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-vs-bin050780-ZLUTE-LM-11aug20."
                     /isolation_source="Zlutice reservoir"
                     /db_xref="taxon:2052990"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-08-11"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBAPRH010000001-CBAPRH010000053
WGS_SCAFLD  NZ_CBAPRH010000001-NZ_CBAPRH010000053
//
LOCUS       NZ_JAOCHH010000000   5772709 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter mucicolens strain GD03755, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCHH000000000
VERSION     NZ_JAOCHH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525211
            Assembly: GCF_029842925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter mucicolens
  ORGANISM  Achromobacter mucicolens
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 5772709)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5772709)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCHH000000000.1.
            The Achromobacter mucicolens whole genome shotgun (WGS) project has
            the project accession NZ_JAOCHH000000000.  This version of the
            project (01) has the accession number NZ_JAOCHH010000000, and
            consists of sequences JAOCHH010000001-JAOCHH010000111.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 75.914x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029842925.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:04:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,370
            CDSs (total)                      :: 5,307
            Genes (coding)                    :: 5,262
            CDSs (with protein)               :: 5,262
            Genes (RNA)                       :: 63
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 54
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 11 of 45
            Pseudo Genes (incomplete)         :: 35 of 45
            Pseudo Genes (internal stop)      :: 3 of 45
            Pseudo Genes (multiple problems)  :: 4 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5772709
                     /organism="Achromobacter mucicolens"
                     /mol_type="genomic DNA"
                     /strain="GD03755"
                     /isolation_source="surface swab"
                     /db_xref="taxon:1389922"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCHH010000001-JAOCHH010000111
WGS_SCAFLD  NZ_JAOCHH010000001-NZ_JAOCHH010000111
//
LOCUS       NZ_JAOCKG010000000   6863184 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Achromobacter marplatensis strain GD03676, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKG000000000
VERSION     NZ_JAOCKG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525132
            Assembly: GCF_029844665.1
KEYWORDS    WGS; RefSeq.
SOURCE      Achromobacter marplatensis (Achromobacter spiritinus)
  ORGANISM  Achromobacter marplatensis
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Alcaligenaceae; Achromobacter.
REFERENCE   1  (bases 1 to 6863184)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6863184)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKG000000000.1.
            The Achromobacter marplatensis whole genome shotgun (WGS) project
            has the project accession NZ_JAOCKG000000000.  This version of the
            project (01) has the accession number NZ_JAOCKG010000000, and
            consists of sequences JAOCKG010000001-JAOCKG010000048.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 45.266x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844665.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:24:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,340
            CDSs (total)                      :: 6,280
            Genes (coding)                    :: 6,237
            CDSs (with protein)               :: 6,237
            Genes (RNA)                       :: 60
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 52
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 43
            CDSs (without protein)            :: 43
            Pseudo Genes (ambiguous residues) :: 0 of 43
            Pseudo Genes (frameshifted)       :: 8 of 43
            Pseudo Genes (incomplete)         :: 32 of 43
            Pseudo Genes (internal stop)      :: 6 of 43
            Pseudo Genes (multiple problems)  :: 3 of 43
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6863184
                     /organism="Achromobacter marplatensis"
                     /mol_type="genomic DNA"
                     /strain="GD03676"
                     /isolation_source="surface swab"
                     /db_xref="taxon:470868"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKG010000001-JAOCKG010000048
WGS_SCAFLD  NZ_JAOCKG010000001-NZ_JAOCKG010000048
//
LOCUS       NZ_CBCDGB010000000   2531743 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aquirufa sp. isolate
            PELAGICS-MAG-m2-bin113489-MILAE-SM-27jul20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCDGB000000000
VERSION     NZ_CBCDGB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117457546
            Assembly: GCF_965034285.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aquirufa sp. (freshwater metagenome)
  ORGANISM  Aquirufa sp.
            Bacteria; Pseudomonadati; Bacteroidota; Cytophagia; Cytophagales;
            Flectobacillaceae; Aquirufa.
REFERENCE   1  (bases 1 to 2531743)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCDGB000000000.1.
            The Aquirufa sp. whole genome shotgun (WGS) project has the project
            accession NZ_CBCDGB000000000.  This version of the project (01) has
            the accession number NZ_CBCDGB010000000, and consists of sequences
            CBCDGB010000001-CBCDGB010000090.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965034285.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 01:18:47
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,262
            CDSs (total)                      :: 2,230
            Genes (coding)                    :: 2,216
            CDSs (with protein)               :: 2,216
            Genes (RNA)                       :: 32
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 0 of 14
            Pseudo Genes (incomplete)         :: 14 of 14
            Pseudo Genes (internal stop)      :: 2 of 14
            Pseudo Genes (multiple problems)  :: 2 of 14
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531743
                     /organism="Aquirufa sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin113489-MILAE-SM-27jul20."
                     /isolation_source="Milada lake"
                     /db_xref="taxon:2676249"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-07-27"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCDGB010000001-CBCDGB010000090
WGS_SCAFLD  NZ_CBCDGB010000001-NZ_CBCDGB010000090
//
LOCUS       NZ_JBEFNG010000000   2445881 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acidaminococcus faecalis strain DS4831, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBEFNG000000000
VERSION     NZ_JBEFNG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41013579
            Assembly: GCF_040196225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acidaminococcus faecalis
  ORGANISM  Acidaminococcus faecalis
            Bacteria; Bacillati; Bacillota; Negativicutes; Acidaminococcales;
            Acidaminococcaceae; Acidaminococcus.
REFERENCE   1  (bases 1 to 2445881)
  AUTHORS   Jang,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2024) Korean Collection for Type Cultures, Korea
            Research Institute of Bioscience and Biotechnology, 181 Ipsin-gil,
            Jeongup-si, Jeollabuk-do 56212, South Korea
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEFNG000000000.1.
            The Acidaminococcus faecalis whole genome shotgun (WGS) project has
            the project accession NZ_JBEFNG000000000.  This version of the
            project (01) has the accession number NZ_JBEFNG010000000, and
            consists of sequences JBEFNG010000001-JBEFNG010000035.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2024
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_040196225.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 16:29:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,282
            CDSs (total)                      :: 2,208
            Genes (coding)                    :: 2,193
            CDSs (with protein)               :: 2,193
            Genes (RNA)                       :: 74
            rRNAs                             :: 6, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 56
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 4 of 15
            Pseudo Genes (incomplete)         :: 12 of 15
            Pseudo Genes (internal stop)      :: 1 of 15
            Pseudo Genes (multiple problems)  :: 2 of 15
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445881
                     /organism="Acidaminococcus faecalis"
                     /mol_type="genomic DNA"
                     /strain="DS4831"
                     /isolation_source="EVNO:01001029"
                     /host="Homo sapiens"
                     /type_material="type strain of Acidaminococcus faecalis"
                     /db_xref="taxon:3141399"
                     /geo_loc_name="South Korea: Jeong-eup"
                     /lat_lon="35.5668722 N 126.8581111 E"
                     /collection_date="2023-11"
WGS         JBEFNG010000001-JBEFNG010000035
WGS_SCAFLD  NZ_JBEFNG010000001-NZ_JBEFNG010000035
//
LOCUS       NZ_AEFU01000000      4127435 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus atrophaeus ATCC 9372-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEFU00000000
VERSION     NZ_AEFU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN01816424
            Assembly: GCF_000204825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus atrophaeus ATCC 9372-2
  ORGANISM  Bacillus atrophaeus ATCC 9372-2
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4127435)
  AUTHORS   Gibbons,H.S., Broomall,S.M., McNew,L.A., Daligault,H., Chapman,C.,
            Bruce,D., Karavis,M., Krepps,M., McGregor,P.A., Hong,C., Park,K.H.,
            Akmal,A., Feldman,A., Lin,J.S., Chang,W.E., Higgs,B.W., Demirev,P.,
            Lindquist,J., Liem,A., Fochler,E., Read,T.D., Tapia,R., Johnson,S.,
            Bishop-Lilly,K.A., Detter,C., Han,C., Sozhamannan,S.,
            Rosenzweig,C.N. and Skowronski,E.W.
  TITLE     Genomic signatures of strain selection and enhancement in Bacillus
            atrophaeus var. globigii, a historical biowarfare simulant
  JOURNAL   PLoS One 6 (3), e17836 (2011)
   PUBMED   21464989
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127435)
  AUTHORS   Gibbons,H.S., Broomall,S., McNew,L.A., Karavis,M., McGregor,P.,
            Liem,A., Fochler,E., Donarum,G., Rosenzweig,C.N. and Skowronski,E.
  CONSRTM   Transformational Medical Technologies Program
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2010) Genomics Integrated Product Team, US Army
            Edgewood Chemical Biological Center, 5183 Blackhawk Rd, Aberdeen
            Proving Ground, MD 21010-5424, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEFU00000000.1.
            The Bacillus atrophaeus ATCC 9372-2 whole genome shotgun (WGS)
            project has the project accession NZ_AEFU00000000.  This version of
            the project (01) has the accession number NZ_AEFU01000000, and
            consists of sequences AEFU01000001-AEFU01000032.
            Source DNA available from Henry S. Gibbons.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.0.01.14
            Genome Coverage       :: 42x
            Sequencing Technology :: 454 FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000204825.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 09:48:40
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,232
            CDSs (total)                      :: 4,176
            Genes (coding)                    :: 3,974
            CDSs (with protein)               :: 3,974
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 202
            CDSs (without protein)            :: 202
            Pseudo Genes (ambiguous residues) :: 0 of 202
            Pseudo Genes (frameshifted)       :: 127 of 202
            Pseudo Genes (incomplete)         :: 119 of 202
            Pseudo Genes (internal stop)      :: 24 of 202
            Pseudo Genes (multiple problems)  :: 62 of 202
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4127435
                     /organism="Bacillus atrophaeus ATCC 9372-2"
                     /mol_type="genomic DNA"
                     /strain="ATCC 9372-2"
                     /culture_collection="ATCC:9372-2"
                     /db_xref="taxon:723892"
WGS         AEFU01000001-AEFU01000032
WGS_SCAFLD  NZ_AEFU01000001-NZ_AEFU01000032
//
LOCUS       NZ_SNXJ01000000      2342374 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Avibacterium gallinarum strain DSM 17481, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SNXJ00000000
VERSION     NZ_SNXJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866486
            Assembly: GCF_004362535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Avibacterium gallinarum
  ORGANISM  Avibacterium gallinarum
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Avibacterium.
REFERENCE   1  (bases 1 to 2342374)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2342374)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNXJ00000000.1.
            The Avibacterium gallinarum whole genome shotgun (WGS) project has
            the project accession NZ_SNXJ00000000.  This version of the project
            (01) has the accession number NZ_SNXJ01000000, and consists of
            sequences SNXJ01000001-SNXJ01000022.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 640.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004362535.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:18:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,253
            CDSs (total)                      :: 2,192
            Genes (coding)                    :: 2,158
            CDSs (with protein)               :: 2,158
            Genes (RNA)                       :: 61
            rRNAs                             :: 6, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 3, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 16 of 34
            Pseudo Genes (incomplete)         :: 18 of 34
            Pseudo Genes (internal stop)      :: 10 of 34
            Pseudo Genes (multiple problems)  :: 8 of 34
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342374
                     /organism="Avibacterium gallinarum"
                     /mol_type="genomic DNA"
                     /strain="DSM 17481"
                     /culture_collection="DSM:17481"
                     /type_material="type strain of Pasteurella gallinarum"
                     /db_xref="taxon:755"
                     /geo_loc_name="USA"
WGS         SNXJ01000001-SNXJ01000022
WGS_SCAFLD  NZ_SNXJ01000001-NZ_SNXJ01000022
//
LOCUS       NZ_CBCMTP010000000   4796489 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Algoriphagus sp. isolate
            PELAGICS-MAG-mn-bin010825-VRNZM-SM-23sep21., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCMTP000000000
VERSION     NZ_CBCMTP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117461607
            Assembly: GCF_965099425.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Algoriphagus sp. (freshwater metagenome)
  ORGANISM  Algoriphagus sp.
            Bacteria; Pseudomonadati; Bacteroidota; Cytophagia; Cytophagales;
            Cyclobacteriaceae; Algoriphagus.
REFERENCE   1  (bases 1 to 4796489)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCMTP000000000.1.
            The Algoriphagus sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCMTP000000000.  This version of the project
            (01) has the accession number NZ_CBCMTP010000000, and consists of
            sequences CBCMTP010000001-CBCMTP010000055.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965099425.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 01:26:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,276
            CDSs (total)                      :: 4,233
            Genes (coding)                    :: 4,197
            CDSs (with protein)               :: 4,197
            Genes (RNA)                       :: 43
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 35
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 6 of 36
            Pseudo Genes (incomplete)         :: 28 of 36
            Pseudo Genes (internal stop)      :: 8 of 36
            Pseudo Genes (multiple problems)  :: 4 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4796489
                     /organism="Algoriphagus sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-mn-bin010825-VRNZM-SM-23sep21."
                     /isolation_source="Vransko-Zadar lake"
                     /db_xref="taxon:1872435"
                     /environmental_sample
                     /geo_loc_name="Croatia"
                     /collection_date="2021-09-23"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCMTP010000001-CBCMTP010000055
WGS_SCAFLD  NZ_CBCMTP010000001-NZ_CBCMTP010000055
//
LOCUS       NZ_JBXAUA010000000   3945152 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 75946571, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUA000000000
VERSION     NZ_JBXAUA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137475
            Assembly: GCF_056781455.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3945152)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUA000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAUA000000000.  This version of the
            project (01) has the accession number NZ_JBXAUA010000000, and
            consists of sequences JBXAUA010000001-JBXAUA010000220.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 76x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781455.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:44:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,992
            CDSs (total)                      :: 3,917
            Genes (coding)                    :: 3,728
            CDSs (with protein)               :: 3,728
            Genes (RNA)                       :: 75
            rRNAs                             :: 2, 2 (16S, 23S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 189
            CDSs (without protein)            :: 189
            Pseudo Genes (ambiguous residues) :: 0 of 189
            Pseudo Genes (frameshifted)       :: 56 of 189
            Pseudo Genes (incomplete)         :: 123 of 189
            Pseudo Genes (internal stop)      :: 31 of 189
            Pseudo Genes (multiple problems)  :: 15 of 189
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3945152
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="75946571"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2020-09-05"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUA010000001-JBXAUA010000220
WGS_SCAFLD  NZ_JBXAUA010000001-NZ_JBXAUA010000220
//
LOCUS       NZ_RDBF01000000      3368070 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromicrobium phragmitis strain 9W16Y-2, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RDBF00000000
VERSION     NZ_RDBF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10236333
            Assembly: GCF_003674095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromicrobium phragmitis
  ORGANISM  Aeromicrobium phragmitis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Nocardioidaceae; Aeromicrobium.
REFERENCE   1  (bases 1 to 3368070)
  AUTHORS   Li,F.
  TITLE     Aeromicrobium sp. 9W16Y-2 whole genome shotgun sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3368070)
  AUTHORS   Li,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2018) Microbial Chemistry, Institute of Medicinal
            Biotechnology, Chinese Academy of Medical Sciences, Tiantan Xi Li
            No. 1, Beijing, Beijing 100050, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RDBF00000000.1.
            The Aeromicrobium phragmitis whole genome shotgun (WGS) project has
            the project accession NZ_RDBF00000000.  This version of the project
            (01) has the accession number NZ_RDBF01000000, and consists of
            sequences RDBF01000001-RDBF01000319.
            Bacteria and source DNA available from Feina Li.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA-UD v. 1.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500.0x
            Sequencing Technology  :: BGISEQ500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003674095.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 09:46:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,534
            CDSs (total)                      :: 3,482
            Genes (coding)                    :: 3,410
            CDSs (with protein)               :: 3,410
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 72
            CDSs (without protein)            :: 72
            Pseudo Genes (ambiguous residues) :: 0 of 72
            Pseudo Genes (frameshifted)       :: 2 of 72
            Pseudo Genes (incomplete)         :: 70 of 72
            Pseudo Genes (internal stop)      :: 0 of 72
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3368070
                     /organism="Aeromicrobium phragmitis"
                     /mol_type="genomic DNA"
                     /strain="9W16Y-2"
                     /isolation_source="plant"
                     /type_material="type material of Aeromicrobium phragmitis"
                     /db_xref="taxon:2478914"
                     /geo_loc_name="China: Xinjiang Uyghur Autonomous Region"
                     /collection_date="2016"
WGS         RDBF01000001-RDBF01000319
WGS_SCAFLD  NZ_RDBF01000001-NZ_RDBF01000319
//
LOCUS       NZ_SOEP01000000      6002460 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Amycolatopsis arida strain DSM 45648, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SOEP00000000
VERSION     NZ_SOEP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07621706
            Assembly: GCF_004365925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Amycolatopsis arida
  ORGANISM  Amycolatopsis arida
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.
REFERENCE   1  (bases 1 to 6002460)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase
            II (KMG-II): from individual species to whole genera
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6002460)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SOEP00000000.1.
            The Amycolatopsis arida whole genome shotgun (WGS) project has the
            project accession NZ_SOEP00000000.  This version of the project
            (01) has the accession number NZ_SOEP01000000, and consists of
            sequences SOEP01000001-SOEP01000028.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 116.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004365925.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:30:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,801
            CDSs (total)                      :: 5,743
            Genes (coding)                    :: 5,637
            CDSs (with protein)               :: 5,637
            Genes (RNA)                       :: 58
            rRNAs                             :: 1, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 23 of 106
            Pseudo Genes (incomplete)         :: 94 of 106
            Pseudo Genes (internal stop)      :: 2 of 106
            Pseudo Genes (multiple problems)  :: 12 of 106
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6002460
                     /organism="Amycolatopsis arida"
                     /mol_type="genomic DNA"
                     /strain="DSM 45648"
                     /culture_collection="DSM:45648"
                     /type_material="type strain of Yuhushiella deserti"
                     /db_xref="taxon:587909"
WGS         SOEP01000001-SOEP01000028
WGS_SCAFLD  NZ_SOEP01000001-NZ_SOEP01000028
//
LOCUS       NZ_SOBF01000000      1710369 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Allofrancisella inopinata strain DSM 101834, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SOBF00000000
VERSION     NZ_SOBF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10362943
            Assembly: GCF_004365555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Allofrancisella inopinata
  ORGANISM  Allofrancisella inopinata
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Thiotrichales; Francisellaceae; Allofrancisella.
REFERENCE   1  (bases 1 to 1710369)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1710369)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SOBF00000000.1.
            The Allofrancisella inopinata whole genome shotgun (WGS) project
            has the project accession NZ_SOBF00000000.  This version of the
            project (01) has the accession number NZ_SOBF01000000, and consists
            of sequences SOBF01000001-SOBF01000044.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 877.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004365555.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:24:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,606
            CDSs (total)                      :: 1,562
            Genes (coding)                    :: 1,526
            CDSs (with protein)               :: 1,526
            Genes (RNA)                       :: 44
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 12 of 36
            Pseudo Genes (incomplete)         :: 29 of 36
            Pseudo Genes (internal stop)      :: 8 of 36
            Pseudo Genes (multiple problems)  :: 11 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710369
                     /organism="Allofrancisella inopinata"
                     /mol_type="genomic DNA"
                     /strain="DSM 101834"
                     /culture_collection="DSM:101834"
                     /type_material="type strain of Allofrancisella inopinata"
                     /db_xref="taxon:1085647"
WGS         SOBF01000001-SOBF01000044
WGS_SCAFLD  NZ_SOBF01000001-NZ_SOBF01000044
//
LOCUS       NZ_JBXAUD010000000   3876287 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 70296929, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUD000000000
VERSION     NZ_JBXAUD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137472
            Assembly: GCF_056781515.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3876287)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUD000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAUD000000000.  This version of the
            project (01) has the accession number NZ_JBXAUD010000000, and
            consists of sequences JBXAUD010000001-JBXAUD010000063.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 64x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781515.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:48:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,742
            CDSs (total)                      :: 3,671
            Genes (coding)                    :: 3,608
            CDSs (with protein)               :: 3,608
            Genes (RNA)                       :: 71
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 15 of 63
            Pseudo Genes (incomplete)         :: 39 of 63
            Pseudo Genes (internal stop)      :: 12 of 63
            Pseudo Genes (multiple problems)  :: 3 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3876287
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="70296929"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2020-10-25"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUD010000001-JBXAUD010000063
WGS_SCAFLD  NZ_JBXAUD010000001-NZ_JBXAUD010000063
//
LOCUS       NZ_RQJX01000000      3063801 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromicrobium camelliae strain YS17T, whole genome shotgun
            sequencing project.
ACCESSION   NZ_RQJX00000000
VERSION     NZ_RQJX00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10465471
            Assembly: GCF_003850045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromicrobium camelliae
  ORGANISM  Aeromicrobium camelliae
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Propionibacteriales; Nocardioidaceae; Aeromicrobium.
REFERENCE   1  (bases 1 to 3063801)
  AUTHORS   Li,F.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2018) Microbial Chemistry, Institute of Medicinal
            Biotechnology, Chinese Academy of Medical Sciences, Tiantan Xi Li
            No. 1, Beijing, Beijing 100050, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            RQJX00000000.1.
            The Aeromicrobium camelliae whole genome shotgun (WGS) project has
            the project accession NZ_RQJX00000000.  This version of the project
            (01) has the accession number NZ_RQJX01000000, and consists of
            sequences RQJX01000001-RQJX01000040.
            Bacteria and source DNA available from CGMCC.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA-UD v. 1.1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 500.0x
            Sequencing Technology  :: BGISEQ500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_003850045.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 09:45:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,089
            CDSs (total)                      :: 3,038
            Genes (coding)                    :: 3,012
            CDSs (with protein)               :: 3,012
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 8 of 26
            Pseudo Genes (incomplete)         :: 17 of 26
            Pseudo Genes (internal stop)      :: 3 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3063801
                     /organism="Aeromicrobium camelliae"
                     /mol_type="genomic DNA"
                     /strain="YS17T"
                     /isolation_source="Puer tea"
                     /type_material="type strain of Aeromicrobium camelliae"
                     /db_xref="taxon:1538144"
                     /geo_loc_name="China: Yunnan province"
                     /collection_date="2014"
WGS         RQJX01000001-RQJX01000040
WGS_SCAFLD  NZ_RQJX01000001-NZ_RQJX01000040
//
LOCUS       NZ_JBXAEU010000000   4073169 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Opaque_2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAEU000000000
VERSION     NZ_JBXAEU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122955
            Assembly: GCF_056781835.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4073169)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAEU000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAEU000000000.  This version of the
            project (01) has the accession number NZ_JBXAEU010000000, and
            consists of sequences JBXAEU010000001-JBXAEU010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Opaque_2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 838.3551x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781835.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:04:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,970
            CDSs (total)                      :: 3,874
            Genes (coding)                    :: 3,816
            CDSs (with protein)               :: 3,816
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            CDSs (without protein)            :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 25 of 58
            Pseudo Genes (incomplete)         :: 30 of 58
            Pseudo Genes (internal stop)      :: 15 of 58
            Pseudo Genes (multiple problems)  :: 12 of 58
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4073169
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Opaque_2"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAEU010000001-JBXAEU010000003
WGS_SCAFLD  NZ_CM165573
WGS_SCAFLD  NZ_JBXAEU010000002-NZ_JBXAEU010000003
//
LOCUS       NZ_SNYJ01000000      4380820 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aureibacillus halotolerans strain DSM 28697, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SNYJ00000000
VERSION     NZ_SNYJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10864735
            Assembly: GCF_004363045.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aureibacillus halotolerans
  ORGANISM  Aureibacillus halotolerans
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Aureibacillus.
REFERENCE   1  (bases 1 to 4380820)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4380820)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNYJ00000000.1.
            The Aureibacillus halotolerans whole genome shotgun (WGS) project
            has the project accession NZ_SNYJ00000000.  This version of the
            project (01) has the accession number NZ_SNYJ01000000, and consists
            of sequences SNYJ01000001-SNYJ01000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 342.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004363045.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:32:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,207
            CDSs (total)                      :: 4,136
            Genes (coding)                    :: 4,101
            CDSs (with protein)               :: 4,101
            Genes (RNA)                       :: 71
            rRNAs                             :: 6, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 3, 1 (5S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 10 of 35
            Pseudo Genes (incomplete)         :: 25 of 35
            Pseudo Genes (internal stop)      :: 5 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4380820
                     /organism="Aureibacillus halotolerans"
                     /mol_type="genomic DNA"
                     /strain="DSM 28697"
                     /culture_collection="DSM:28697"
                     /type_material="type strain of Aureibacillus halotolerans"
                     /db_xref="taxon:1508390"
WGS         SNYJ01000001-SNYJ01000043
WGS_SCAFLD  NZ_SNYJ01000001-NZ_SNYJ01000043
//
LOCUS       NZ_JBXAEN010000000   4101485 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAEN000000000
VERSION     NZ_JBXAEN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122962
            Assembly: GCF_056781735.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4101485)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAEN000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAEN000000000.  This version of the
            project (01) has the accession number NZ_JBXAEN010000000, and
            consists of sequences JBXAEN010000001-JBXAEN010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Parental
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 705.9618x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781735.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:00:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,013
            CDSs (total)                      :: 3,917
            Genes (coding)                    :: 3,857
            CDSs (with protein)               :: 3,857
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 27 of 60
            Pseudo Genes (incomplete)         :: 30 of 60
            Pseudo Genes (internal stop)      :: 15 of 60
            Pseudo Genes (multiple problems)  :: 12 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4101485
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075"
                     /isolation_source="parent stock"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-04-19"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAEN010000001-JBXAEN010000003
WGS_SCAFLD  NZ_CM165568
WGS_SCAFLD  NZ_JBXAEN010000002-NZ_JBXAEN010000003
//
LOCUS       NZ_SNXW01000000      4204303 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aquabacterium commune strain DSM 11901, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SNXW00000000
VERSION     NZ_SNXW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10866316
            Assembly: GCF_004362855.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aquabacterium commune
  ORGANISM  Aquabacterium commune
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales; Aquabacterium.
REFERENCE   1  (bases 1 to 4204303)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4204303)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNXW00000000.1.
            The Aquabacterium commune whole genome shotgun (WGS) project has
            the project accession NZ_SNXW00000000.  This version of the project
            (01) has the accession number NZ_SNXW01000000, and consists of
            sequences SNXW01000001-SNXW01000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 357.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004362855.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:49:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,750
            CDSs (total)                      :: 3,693
            Genes (coding)                    :: 3,648
            CDSs (with protein)               :: 3,648
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 6 of 45
            Pseudo Genes (incomplete)         :: 42 of 45
            Pseudo Genes (internal stop)      :: 3 of 45
            Pseudo Genes (multiple problems)  :: 6 of 45
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4204303
                     /organism="Aquabacterium commune"
                     /mol_type="genomic DNA"
                     /strain="DSM 11901"
                     /culture_collection="DSM:11901"
                     /type_material="type strain of Aquabacterium commune"
                     /db_xref="taxon:70586"
WGS         SNXW01000001-SNXW01000039
WGS_SCAFLD  NZ_SNXW01000001-NZ_SNXW01000039
//
LOCUS       NZ_JBXAUF010000000   3766100 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 69151384, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUF000000000
VERSION     NZ_JBXAUF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137470
            Assembly: GCF_056781575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3766100)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUF000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAUF000000000.  This version of the
            project (01) has the accession number NZ_JBXAUF010000000, and
            consists of sequences JBXAUF010000001-JBXAUF010000022.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 61x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781575.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:43:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,611
            CDSs (total)                      :: 3,541
            Genes (coding)                    :: 3,496
            CDSs (with protein)               :: 3,496
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 45
            CDSs (without protein)            :: 45
            Pseudo Genes (ambiguous residues) :: 0 of 45
            Pseudo Genes (frameshifted)       :: 21 of 45
            Pseudo Genes (incomplete)         :: 21 of 45
            Pseudo Genes (internal stop)      :: 13 of 45
            Pseudo Genes (multiple problems)  :: 8 of 45
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3766100
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="69151384"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2017-06-13"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUF010000001-JBXAUF010000022
WGS_SCAFLD  NZ_JBXAUF010000001-NZ_JBXAUF010000022
//
LOCUS       NZ_JAAMOY010000000   2629846 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Auritidibacter ignavus strain DSM 45359, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAAMOY000000000
VERSION     NZ_JAAMOY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12025551
            Assembly: GCF_011758685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Auritidibacter ignavus
  ORGANISM  Auritidibacter ignavus
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Micrococcaceae; Auritidibacter.
REFERENCE   1  (bases 1 to 2629846)
  AUTHORS   Klenk,H.-P.
  TITLE     Sequencing the genomes of 1000 actinobacteria strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2629846)
  AUTHORS   Klenk,H.-P., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAMOY000000000.1.
            The Auritidibacter ignavus whole genome shotgun (WGS) project has
            the project accession NZ_JAAMOY000000000.  This version of the
            project (01) has the accession number NZ_JAAMOY010000000, and
            consists of sequences JAAMOY010000001-JAAMOY010000010.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtlink/6.0.0.47835, HGAP 4
                                      (0.2.1)
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 897.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011758685.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:01:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,442
            CDSs (total)                      :: 2,388
            Genes (coding)                    :: 2,325
            CDSs (with protein)               :: 2,325
            Genes (RNA)                       :: 54
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 20 of 63
            Pseudo Genes (incomplete)         :: 49 of 63
            Pseudo Genes (internal stop)      :: 9 of 63
            Pseudo Genes (multiple problems)  :: 13 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629846
                     /organism="Auritidibacter ignavus"
                     /mol_type="genomic DNA"
                     /strain="DSM 45359"
                     /culture_collection="DSM:45359"
                     /type_material="type strain of Auritidibacter ignavus"
                     /db_xref="taxon:678932"
                     /geo_loc_name="Germany: Bad Orb"
WGS         JAAMOY010000001-JAAMOY010000010
WGS_SCAFLD  NZ_JAAMOY010000001-NZ_JAAMOY010000010
//
LOCUS       NZ_JBXAUC010000000   3710841 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 71105935, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUC000000000
VERSION     NZ_JBXAUC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137473
            Assembly: GCF_056781495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3710841)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUC000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAUC000000000.  This version of the
            project (01) has the accession number NZ_JBXAUC010000000, and
            consists of sequences JBXAUC010000001-JBXAUC010000025.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 73x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781495.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:53:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,529
            CDSs (total)                      :: 3,460
            Genes (coding)                    :: 3,405
            CDSs (with protein)               :: 3,405
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 27 of 55
            Pseudo Genes (incomplete)         :: 17 of 55
            Pseudo Genes (internal stop)      :: 15 of 55
            Pseudo Genes (multiple problems)  :: 4 of 55
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3710841
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="71105935"
                     /isolation_source="rectal exudate"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2020-10-15"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUC010000001-JBXAUC010000025
WGS_SCAFLD  NZ_JBXAUC010000001-NZ_JBXAUC010000025
//
LOCUS       NZ_JRYW01000000      5021090 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas salmonicida subsp. salmonicida strain 2004-05MF26, whole
            genome shotgun sequencing project.
ACCESSION   NZ_JRYW00000000
VERSION     NZ_JRYW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03120845
            Assembly: GCF_000786805.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas salmonicida subsp. salmonicida
  ORGANISM  Aeromonas salmonicida subsp. salmonicida
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 5021090)
  AUTHORS   Vincent,A.T., Tanaka,K.H., Trudel,M.V., Frenette,M., Derome,N. and
            Charette,S.J.
  TITLE     Draft Genome Sequences of two Aeromonas salmonicida subsp.
            salmonicida Harboring Plasmids Conferring Drug Resistances
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5021090)
  AUTHORS   Vincent,A.T., Tanaka,K.H., Trudel,M.V., Frenette,M., Derome,N. and
            Charette,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2014) Biochimie, Microbiologie et
            Bio-Informatique, Universite Laval, 1030 Av. de le Medecine, Quebec
            G1V 0A6, Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JRYW00000000.1.
            The Aeromonas salmonicida subsp. salmonicida whole genome shotgun
            (WGS) project has the project accession NZ_JRYW00000000.  This
            version of the project (01) has the accession number
            NZ_JRYW01000000, and consists of sequences
            JRYW01000001-JRYW01000126.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: A5 pipeline v. 20140401
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 129.0x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000786805.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 09:47:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,008
            CDSs (total)                      :: 4,871
            Genes (coding)                    :: 4,600
            CDSs (with protein)               :: 4,600
            Genes (RNA)                       :: 137
            rRNAs                             :: 10, 13, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 8 (5S)
            partial rRNAs                     :: 2, 13, 5 (5S, 16S, 23S)
            tRNAs                             :: 105
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 271
            CDSs (without protein)            :: 271
            Pseudo Genes (ambiguous residues) :: 0 of 271
            Pseudo Genes (frameshifted)       :: 133 of 271
            Pseudo Genes (incomplete)         :: 126 of 271
            Pseudo Genes (internal stop)      :: 35 of 271
            Pseudo Genes (multiple problems)  :: 22 of 271
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5021090
                     /organism="Aeromonas salmonicida subsp. salmonicida"
                     /mol_type="genomic DNA"
                     /strain="2004-05MF26"
                     /isolation_source="sick fish"
                     /host="fish"
                     /sub_species="salmonicida"
                     /db_xref="taxon:29491"
                     /geo_loc_name="Canada: New Brunswick"
                     /collection_date="2004"
WGS         JRYW01000001-JRYW01000126
WGS_SCAFLD  NZ_JRYW01000001-NZ_JRYW01000126
//
LOCUS       NZ_JBXATZ010000000   3905368 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 77003972, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXATZ000000000
VERSION     NZ_JBXATZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137476
            Assembly: GCF_056781555.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3905368)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXATZ000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXATZ000000000.  This version of the
            project (01) has the accession number NZ_JBXATZ010000000, and
            consists of sequences JBXATZ010000001-JBXATZ010000020.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 61x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781555.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:53:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,740
            CDSs (total)                      :: 3,670
            Genes (coding)                    :: 3,622
            CDSs (with protein)               :: 3,622
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 21 of 48
            Pseudo Genes (incomplete)         :: 24 of 48
            Pseudo Genes (internal stop)      :: 7 of 48
            Pseudo Genes (multiple problems)  :: 4 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3905368
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="77003972"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2023-05-30"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXATZ010000001-JBXATZ010000020
WGS_SCAFLD  NZ_JBXATZ010000001-NZ_JBXATZ010000020
//
LOCUS       NZ_JBXAUE010000000   3902118 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 69302181, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUE000000000
VERSION     NZ_JBXAUE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137471
            Assembly: GCF_056781535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3902118)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUE000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAUE000000000.  This version of the
            project (01) has the accession number NZ_JBXAUE010000000, and
            consists of sequences JBXAUE010000001-JBXAUE010000078.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 105x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781535.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:56:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,753
            CDSs (total)                      :: 3,684
            Genes (coding)                    :: 3,615
            CDSs (with protein)               :: 3,615
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 14 of 69
            Pseudo Genes (incomplete)         :: 42 of 69
            Pseudo Genes (internal stop)      :: 16 of 69
            Pseudo Genes (multiple problems)  :: 3 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3902118
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="69302181"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2024-10-25"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUE010000001-JBXAUE010000078
WGS_SCAFLD  NZ_JBXAUE010000001-NZ_JBXAUE010000078
//
LOCUS       NZ_JBXAEQ010000000   4101733 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Transparent_2, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAEQ000000000
VERSION     NZ_JBXAEQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122959
            Assembly: GCF_056781775.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4101733)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAEQ000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAEQ000000000.  This version of the
            project (01) has the accession number NZ_JBXAEQ010000000, and
            consists of sequences JBXAEQ010000001-JBXAEQ010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Trans_2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 908.9492x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781775.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:14:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,012
            CDSs (total)                      :: 3,916
            Genes (coding)                    :: 3,848
            CDSs (with protein)               :: 3,848
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 34 of 68
            Pseudo Genes (incomplete)         :: 32 of 68
            Pseudo Genes (internal stop)      :: 15 of 68
            Pseudo Genes (multiple problems)  :: 13 of 68
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4101733
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Transparent_2"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAEQ010000001-JBXAEQ010000004
WGS_SCAFLD  NZ_CM165570
WGS_SCAFLD  NZ_JBXAEQ010000002-NZ_JBXAEQ010000004
//
LOCUS       NZ_JBXAEO010000000   4109616 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Transparent_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAEO000000000
VERSION     NZ_JBXAEO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122961
            Assembly: GCF_056781745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4109616)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAEO000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAEO000000000.  This version of the
            project (01) has the accession number NZ_JBXAEO010000000, and
            consists of sequences JBXAEO010000001-JBXAEO010000004.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Trans_4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 579.3371x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781745.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:05:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,020
            CDSs (total)                      :: 3,924
            Genes (coding)                    :: 3,854
            CDSs (with protein)               :: 3,854
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 36 of 70
            Pseudo Genes (incomplete)         :: 32 of 70
            Pseudo Genes (internal stop)      :: 15 of 70
            Pseudo Genes (multiple problems)  :: 13 of 70
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4109616
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Transparent_4"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAEO010000001-JBXAEO010000004
WGS_SCAFLD  NZ_CM165569
WGS_SCAFLD  NZ_JBXAEO010000002-NZ_JBXAEO010000004
//
LOCUS       NZ_JBXAUB010000000   3836786 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 71108562, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUB000000000
VERSION     NZ_JBXAUB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137474
            Assembly: GCF_056781475.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3836786)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUB000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAUB000000000.  This version of the
            project (01) has the accession number NZ_JBXAUB010000000, and
            consists of sequences JBXAUB010000001-JBXAUB010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781475.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:44:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,712
            CDSs (total)                      :: 3,640
            Genes (coding)                    :: 3,577
            CDSs (with protein)               :: 3,577
            Genes (RNA)                       :: 72
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 16 of 63
            Pseudo Genes (incomplete)         :: 37 of 63
            Pseudo Genes (internal stop)      :: 13 of 63
            Pseudo Genes (multiple problems)  :: 3 of 63
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3836786
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="71108562"
                     /isolation_source="brochoalveolar lavage"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2013-08-30"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUB010000001-JBXAUB010000059
WGS_SCAFLD  NZ_JBXAUB010000001-NZ_JBXAUB010000059
//
LOCUS       NZ_LBDI01000000      4982396 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas dhakensis strain Cr1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LBDI00000000
VERSION     NZ_LBDI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03491905
            Assembly: GCF_002734175.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4982396)
  AUTHORS   Tay,Q.X.M., Thian,A., Yung,P.Y., Rajal,V., Yang,L. and Givskov,M.
  TITLE     Detection of potential disease causing bacterial pathogens and
            characterization of antibiotic resistance gene profiles in a
            tropical swimming pool backwash
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4982396)
  AUTHORS   Tay,Q.X.M., Thian,A., Yung,P.Y., Rajal,V., Yang,L. and Givskov,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2015) SCELSE, 60 Nanyang Drive, SBS-01N-27,
            Singapore 637551, Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LBDI00000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_LBDI00000000.  This version of the project
            (01) has the accession number NZ_LBDI01000000, and consists of
            sequences LBDI01000001-LBDI01000079.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: CLC NGS Cell v. 7.5
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002734175.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:21:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,750
            CDSs (total)                      :: 4,647
            Genes (coding)                    :: 4,605
            CDSs (with protein)               :: 4,605
            Genes (RNA)                       :: 103
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 1 (16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 10 of 42
            Pseudo Genes (incomplete)         :: 38 of 42
            Pseudo Genes (internal stop)      :: 3 of 42
            Pseudo Genes (multiple problems)  :: 9 of 42
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4982396
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /strain="Cr1"
                     /isolation_source="Swimming Pool Backwash"
                     /db_xref="taxon:196024"
                     /geo_loc_name="Singapore"
                     /altitude="0 m"
                     /collection_date="2014-03-03"
                     /collected_by="SCELSE"
WGS         LBDI01000001-LBDI01000079
WGS_SCAFLD  NZ_LBDI01000001-NZ_LBDI01000079
//
LOCUS       NZ_JBXAER010000000   4095734 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Transparent_1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAER000000000
VERSION     NZ_JBXAER000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122958
            Assembly: GCF_056781795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4095734)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAER000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAER000000000.  This version of the
            project (01) has the accession number NZ_JBXAER010000000, and
            consists of sequences JBXAER010000001-JBXAER010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Trans_1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 685.0998x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781795.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:16:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,004
            CDSs (total)                      :: 3,908
            Genes (coding)                    :: 3,851
            CDSs (with protein)               :: 3,851
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 57
            CDSs (without protein)            :: 57
            Pseudo Genes (ambiguous residues) :: 0 of 57
            Pseudo Genes (frameshifted)       :: 24 of 57
            Pseudo Genes (incomplete)         :: 29 of 57
            Pseudo Genes (internal stop)      :: 15 of 57
            Pseudo Genes (multiple problems)  :: 11 of 57
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4095734
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Transparent_1"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAER010000001-JBXAER010000003
WGS_SCAFLD  NZ_CM165571
WGS_SCAFLD  NZ_JBXAER010000002-NZ_JBXAER010000003
//
LOCUS       NZ_JBXAET010000000   4107173 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Opaque_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAET000000000
VERSION     NZ_JBXAET000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122956
            Assembly: GCF_056781845.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4107173)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAET000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAET000000000.  This version of the
            project (01) has the accession number NZ_JBXAET010000000, and
            consists of sequences JBXAET010000001-JBXAET010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Opaque_3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 862.6405x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781845.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:27:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,021
            CDSs (total)                      :: 3,925
            Genes (coding)                    :: 3,864
            CDSs (with protein)               :: 3,864
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 27 of 61
            Pseudo Genes (incomplete)         :: 31 of 61
            Pseudo Genes (internal stop)      :: 15 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4107173
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Opaque_3"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAET010000001-JBXAET010000003
WGS_SCAFLD  NZ_CM165574
WGS_SCAFLD  NZ_JBXAET010000002-NZ_JBXAET010000003
//
LOCUS       NZ_JBXAEP010000000   4113550 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Transparent_3, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAEP000000000
VERSION     NZ_JBXAEP000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122960
            Assembly: GCF_056781785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4113550)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAEP000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAEP000000000.  This version of the
            project (01) has the accession number NZ_JBXAEP010000000, and
            consists of sequences JBXAEP010000001-JBXAEP010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Trans_3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 623.7186x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781785.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:15:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,044
            CDSs (total)                      :: 3,948
            Genes (coding)                    :: 3,884
            CDSs (with protein)               :: 3,884
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 31 of 64
            Pseudo Genes (incomplete)         :: 30 of 64
            Pseudo Genes (internal stop)      :: 15 of 64
            Pseudo Genes (multiple problems)  :: 12 of 64
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4113550
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Transparent_3"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAEP010000001-JBXAEP010000003
WGS_SCAFLD  NZ_CM165572
WGS_SCAFLD  NZ_JBXAEP010000002-NZ_JBXAEP010000003
//
LOCUS       NZ_JAAAWS010000000   5760560 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus albus strain B-13, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAAWS000000000
VERSION     NZ_JAAAWS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13865276
            Assembly: GCF_011751595.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus albus
  ORGANISM  Bacillus albus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5760560)
  AUTHORS   Han,Q., Ma,Q. and Li,X.
  TITLE     Variation in rhizosphere microbial communities and its association
            with symbiotic efficiency of rhizobia in soybean
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5760560)
  AUTHORS   Han,Q., Ma,Q. and Li,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JAN-2020) College of Plant Science and Technology,
            Huazhong Agricultural University, No. 1 Shizishan Road, WuHan
            430070, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAAWS000000000.1.
            The Bacillus albus whole genome shotgun (WGS) project has the
            project accession NZ_JAAAWS000000000.  This version of the project
            (01) has the accession number NZ_JAAAWS010000000, and consists of
            sequences JAAAWS010000001-JAAAWS010000106.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: ABySS v. 2.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 12.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011751595.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:15:52
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,888
            CDSs (total)                      :: 5,831
            Genes (coding)                    :: 5,562
            CDSs (with protein)               :: 5,562
            Genes (RNA)                       :: 57
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 47
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 269
            CDSs (without protein)            :: 269
            Pseudo Genes (ambiguous residues) :: 0 of 269
            Pseudo Genes (frameshifted)       :: 88 of 269
            Pseudo Genes (incomplete)         :: 177 of 269
            Pseudo Genes (internal stop)      :: 67 of 269
            Pseudo Genes (multiple problems)  :: 58 of 269
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5760560
                     /organism="Bacillus albus"
                     /mol_type="genomic DNA"
                     /strain="B-13"
                     /isolation_source="Soybean rhizosphere soil"
                     /db_xref="taxon:2026189"
                     /geo_loc_name="China: hebei"
                     /collection_date="2018-10-12"
WGS         JAAAWS010000001-JAAAWS010000106
WGS_SCAFLD  NZ_JAAAWS010000001-NZ_JAAAWS010000106
//
LOCUS       NZ_JBXATX010000000   3965803 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 74437025, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXATX000000000
VERSION     NZ_JBXATX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137478
            Assembly: GCF_056781405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3965803)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXATX000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXATX000000000.  This version of the
            project (01) has the accession number NZ_JBXATX010000000, and
            consists of sequences JBXATX010000001-JBXATX010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 124x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781405.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:42:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,833
            CDSs (total)                      :: 3,764
            Genes (coding)                    :: 3,695
            CDSs (with protein)               :: 3,695
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 69
            CDSs (without protein)            :: 69
            Pseudo Genes (ambiguous residues) :: 0 of 69
            Pseudo Genes (frameshifted)       :: 14 of 69
            Pseudo Genes (incomplete)         :: 42 of 69
            Pseudo Genes (internal stop)      :: 16 of 69
            Pseudo Genes (multiple problems)  :: 3 of 69
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965803
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="74437025"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2024-08-28"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXATX010000001-JBXATX010000080
WGS_SCAFLD  NZ_JBXATX010000001-NZ_JBXATX010000080
//
LOCUS       NZ_SORF01000000      2946034 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Alicyclobacillus sacchari strain DSM 17974, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SORF00000000
VERSION     NZ_SORF00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN08770184
            Assembly: GCF_004366795.1
KEYWORDS    WGS; RefSeq.
SOURCE      Alicyclobacillus sacchari
  ORGANISM  Alicyclobacillus sacchari
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Alicyclobacillaceae; Alicyclobacillus.
REFERENCE   1  (bases 1 to 2946034)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2946034)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SORF00000000.1.
            The Alicyclobacillus sacchari whole genome shotgun (WGS) project
            has the project accession NZ_SORF00000000.  This version of the
            project (01) has the accession number NZ_SORF01000000, and consists
            of sequences SORF01000001-SORF01000066.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.10.1
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 354.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004366795.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:21:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,937
            CDSs (total)                      :: 2,856
            Genes (coding)                    :: 2,809
            CDSs (with protein)               :: 2,809
            Genes (RNA)                       :: 81
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 71
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 12 of 47
            Pseudo Genes (incomplete)         :: 37 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 7 of 47
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946034
                     /organism="Alicyclobacillus sacchari"
                     /mol_type="genomic DNA"
                     /strain="DSM 17974"
                     /culture_collection="DSM:17974"
                     /type_material="type strain of Alicyclobacillus sacchari"
                     /db_xref="taxon:392010"
                     /geo_loc_name="Japan"
WGS         SORF01000001-SORF01000066
WGS_SCAFLD  NZ_SORF01000001-NZ_SORF01000066
//
LOCUS       NZ_JBXAES010000000   4142388 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Opaque_4, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAES000000000
VERSION     NZ_JBXAES000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122957
            Assembly: GCF_056781875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4142388)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAES000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAES000000000.  This version of the
            project (01) has the accession number NZ_JBXAES010000000, and
            consists of sequences JBXAES010000001-JBXAES010000003.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Opaque_4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 970.002x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781875.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:13:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,084
            CDSs (total)                      :: 3,988
            Genes (coding)                    :: 3,902
            CDSs (with protein)               :: 3,902
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 51 of 86
            Pseudo Genes (incomplete)         :: 34 of 86
            Pseudo Genes (internal stop)      :: 15 of 86
            Pseudo Genes (multiple problems)  :: 14 of 86
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4142388
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Opaque_4"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAES010000001-JBXAES010000003
WGS_SCAFLD  NZ_CM165575
WGS_SCAFLD  NZ_JBXAES010000002-NZ_JBXAES010000003
//
LOCUS       NZ_LBDJ01000000      4979614 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas dhakensis strain Cr2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_LBDJ00000000
VERSION     NZ_LBDJ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03491910
            Assembly: GCF_002734165.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4979614)
  AUTHORS   Tay,Q.X.M., Thian,A., Yung,P.Y., Rajal,V., Yang,L. and Givskov,M.
  TITLE     Detection of potential disease causing bacterial pathogens and
            characterization of antibiotic resistance gene profiles in a
            tropical swimming pool backwash
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4979614)
  AUTHORS   Tay,Q.X.M., Thian,A., Yung,P.Y., Rajal,V., Yang,L. and Givskov,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-APR-2015) SCELSE, 60 Nanyang Drive, SBS-01N-27,
            Singapore 637551, Singapore
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            LBDJ00000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_LBDJ00000000.  This version of the project
            (01) has the accession number NZ_LBDJ01000000, and consists of
            sequences LBDJ01000001-LBDJ01000075.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2015
            Assembly Method        :: CLC NGS Cell v. 7.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 20.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002734165.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:21:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,739
            CDSs (total)                      :: 4,641
            Genes (coding)                    :: 4,600
            CDSs (with protein)               :: 4,600
            Genes (RNA)                       :: 98
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 87
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 10 of 41
            Pseudo Genes (incomplete)         :: 37 of 41
            Pseudo Genes (internal stop)      :: 3 of 41
            Pseudo Genes (multiple problems)  :: 9 of 41
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4979614
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /strain="Cr2"
                     /isolation_source="Swimming Pool Backwash"
                     /db_xref="taxon:196024"
                     /geo_loc_name="Singapore"
                     /altitude="0 m"
                     /collection_date="2014-03-03"
                     /collected_by="SCELSE"
WGS         LBDJ01000001-LBDJ01000075
WGS_SCAFLD  NZ_LBDJ01000001-NZ_LBDJ01000075
//
LOCUS       NZ_JBXAUH010000000   3553611 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 62269022, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAUH000000000
VERSION     NZ_JBXAUH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137468
            Assembly: GCF_056781615.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3553611)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAUH000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAUH000000000.  This version of the
            project (01) has the accession number NZ_JBXAUH010000000, and
            consists of sequences JBXAUH010000001-JBXAUH010000143.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 95x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781615.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:46:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,535
            CDSs (total)                      :: 3,464
            Genes (coding)                    :: 3,331
            CDSs (with protein)               :: 3,331
            Genes (RNA)                       :: 71
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 37 of 133
            Pseudo Genes (incomplete)         :: 89 of 133
            Pseudo Genes (internal stop)      :: 20 of 133
            Pseudo Genes (multiple problems)  :: 10 of 133
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3553611
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="62269022"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2017-04-12"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXAUH010000001-JBXAUH010000143
WGS_SCAFLD  NZ_JBXAUH010000001-NZ_JBXAUH010000143
//
LOCUS       NZ_JBXAEV010000000   4102987 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain AB5075_Opaque_1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXAEV000000000
VERSION     NZ_JBXAEV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57122954
            Assembly: GCF_056781935.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 4102987)
  AUTHORS   Dollery,S.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2026) Research and Development, BMI, 124 Byte
            Drive, Frederick, MD 21702, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAEV000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXAEV000000000.  This version of the
            project (01) has the accession number NZ_JBXAEV010000000, and
            consists of sequences JBXAEV010000001-JBXAEV010000005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 14-JAN-2021
            Assembly Method        :: FALCON v. v2.0
            Assembly Name          :: AB5075_Opaque_1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 918.9597x
            Sequencing Technology  :: PacBio RSII
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781935.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:17:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,026
            CDSs (total)                      :: 3,930
            Genes (coding)                    :: 3,853
            CDSs (with protein)               :: 3,853
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 44 of 77
            Pseudo Genes (incomplete)         :: 31 of 77
            Pseudo Genes (internal stop)      :: 15 of 77
            Pseudo Genes (multiple problems)  :: 13 of 77
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4102987
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075_Opaque_1"
                     /isolation_source="spontaneous phase variant of strain
                     AB5075"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="USA: Frederick, Maryland"
                     /lat_lon="39.4577 N 77.4083 W"
                     /collection_date="2020-09-28"
                     /collected_by="Stephen J. Dollery"
WGS         JBXAEV010000001-JBXAEV010000005
WGS_SCAFLD  NZ_CM165576
WGS_SCAFLD  NZ_JBXAEV010000002-NZ_JBXAEV010000005
//
LOCUS       NZ_JAANOV010000000   5623989 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Amycolatopsis granulosa strain DSM 45669, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAANOV000000000
VERSION     NZ_JAANOV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12025003
            Assembly: GCF_011758745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Amycolatopsis granulosa
  ORGANISM  Amycolatopsis granulosa
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.
REFERENCE   1  (bases 1 to 5623989)
  AUTHORS   Klenk,H.-P.
  TITLE     Sequencing the genomes of 1000 actinobacteria strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5623989)
  AUTHORS   Klenk,H.-P., Huntemann,M., Clum,A., Spunde,A., Palaniappan,K.,
            Ritter,S., Mikhailova,N., Chen,I.-M., Stamatis,D., Reddy,T.,
            O'Malley,R., Daum,C., Shapiro,N., Ivanova,N., Kyrpides,N. and
            Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAR-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANOV000000000.1.
            The Amycolatopsis granulosa whole genome shotgun (WGS) project has
            the project accession NZ_JAANOV000000000.  This version of the
            project (01) has the accession number NZ_JAANOV010000000, and
            consists of sequence JAANOV010000001.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. smrtlink/6.0.0.47835, HGAP 4
                                      (0.2.1)
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 149.0x
            Sequencing Technology  :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011758745.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:25:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,558
            CDSs (total)                      :: 5,495
            Genes (coding)                    :: 5,457
            CDSs (with protein)               :: 5,457
            Genes (RNA)                       :: 63
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 38
            CDSs (without protein)            :: 38
            Pseudo Genes (ambiguous residues) :: 0 of 38
            Pseudo Genes (frameshifted)       :: 11 of 38
            Pseudo Genes (incomplete)         :: 28 of 38
            Pseudo Genes (internal stop)      :: 5 of 38
            Pseudo Genes (multiple problems)  :: 5 of 38
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5623989
                     /organism="Amycolatopsis granulosa"
                     /mol_type="genomic DNA"
                     /strain="DSM 45669"
                     /culture_collection="DSM:45669"
                     /type_material="type strain of Amycolatopsis granulosa"
                     /db_xref="taxon:185684"
WGS         JAANOV010000001
WGS_SCAFLD  NZ_JAANOV010000001
//
LOCUS       NZ_JBXATY010000000   3734540 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter baumannii strain 98086263, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXATY000000000
VERSION     NZ_JBXATY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57137477
            Assembly: GCF_056781435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter; Acinetobacter
            calcoaceticus/baumannii complex.
REFERENCE   1  (bases 1 to 3734540)
  AUTHORS   Marimon,J.M. and Ibanez,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-APR-2026) MICROBIOLOGY, HOSPITAL UNIVERSITARIO
            DONOSTIA, PASEO DR. BEGIRISTAIN S/N, DONOSTIA-SAN SEBASTIAN 20014,
            Spain
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXATY000000000.1.
            The Acinetobacter baumannii whole genome shotgun (WGS) project has
            the project accession NZ_JBXATY000000000.  This version of the
            project (01) has the accession number NZ_JBXATY010000000, and
            consists of sequences JBXATY010000001-JBXATY010000053.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. v0.5.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 104x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056781435.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:40:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,596
            CDSs (total)                      :: 3,527
            Genes (coding)                    :: 3,414
            CDSs (with protein)               :: 3,414
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1 (16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 40 of 113
            Pseudo Genes (incomplete)         :: 67 of 113
            Pseudo Genes (internal stop)      :: 19 of 113
            Pseudo Genes (multiple problems)  :: 11 of 113
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734540
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="98086263"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /geo_loc_name="Spain: Donostia San Sebastian"
                     /lat_lon="43.31283 N 1.97499 W"
                     /collection_date="2024-05-07"
                     /collected_by="Microbiology Department. University
                     Hospital Donostia"
WGS         JBXATY010000001-JBXATY010000053
WGS_SCAFLD  NZ_JBXATY010000001-NZ_JBXATY010000053
//
LOCUS       NZ_SMKY01000000      9886063 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Actinomadura darangshiensis strain DSM 45941, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMKY00000000
VERSION     NZ_SMKY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11032560
            Assembly: GCF_004349235.1
KEYWORDS    WGS; RefSeq.
SOURCE      Actinomadura darangshiensis
  ORGANISM  Actinomadura darangshiensis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Streptosporangiales; Thermomonosporaceae; Actinomadura.
REFERENCE   1  (bases 1 to 9886063)
  AUTHORS   Sahin,N., Ay,H. and Saygin,H.
  TITLE     Draft genome sequences of novel Actinobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 9886063)
  AUTHORS   Sahin,N., Ay,H. and Saygin,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2019) Molecular Biology and Genetics, Ondokuz
            Mayis University, Kurupelit, Samsun 55139, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMKY00000000.1.
            The Actinomadura darangshiensis whole genome shotgun (WGS) project
            has the project accession NZ_SMKY00000000.  This version of the
            project (01) has the accession number NZ_SMKY01000000, and consists
            of sequences SMKY01000001-SMKY01000658.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. FEB-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 51x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004349235.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:28:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 9,595
            CDSs (total)                      :: 9,509
            Genes (coding)                    :: 9,301
            CDSs (with protein)               :: 9,301
            Genes (RNA)                       :: 86
            rRNAs                             :: 6, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 208
            CDSs (without protein)            :: 208
            Pseudo Genes (ambiguous residues) :: 0 of 208
            Pseudo Genes (frameshifted)       :: 22 of 208
            Pseudo Genes (incomplete)         :: 192 of 208
            Pseudo Genes (internal stop)      :: 6 of 208
            Pseudo Genes (multiple problems)  :: 11 of 208
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9886063
                     /organism="Actinomadura darangshiensis"
                     /mol_type="genomic DNA"
                     /strain="DSM 45941"
                     /isolation_source="Soil from the surface of a rock"
                     /culture_collection="DSM:45941"
                     /type_material="type strain of Actinomadura
                     darangshiensis"
                     /db_xref="taxon:705336"
                     /geo_loc_name="South Korea: Jeju"
                     /collection_date="2013-07"
WGS         SMKY01000001-SMKY01000658
WGS_SCAFLD  NZ_SMKY01000001-NZ_SMKY01000658
//
LOCUS       NZ_VMNW02000000      9465182 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Amycolatopsis acidicola strain K81G1, whole genome shotgun
            sequencing project.
ACCESSION   NZ_VMNW00000000
VERSION     NZ_VMNW00000000.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12240869
            Assembly: GCF_007713735.2
KEYWORDS    WGS; RefSeq.
SOURCE      Amycolatopsis acidicola
  ORGANISM  Amycolatopsis acidicola
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.
REFERENCE   1  (bases 1 to 9465182)
  AUTHORS   Teo,W.F.A. and Duangmal,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-SEP-2019) Department of Microbiology, Kasetsart
            University, Ngamwongwan, Bangkok 10900, Thailand
REFERENCE   2  (bases 1 to 9465182)
  AUTHORS   Duangmal,K., Teo,W.F.A. and Lipun,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUL-2019) Department of Microbiology, Kasetsart
            University, Ngamwongwan, Bangkok 10900, Thailand
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            VMNW00000000.2.
            
            On Oct 7, 2019 this sequence version replaced NZ_VMNW00000000.1.
            The Amycolatopsis acidicola whole genome shotgun (WGS) project has
            the project accession NZ_VMNW00000000.  This version of the project
            (02) has the accession number NZ_VMNW02000000, and consists of
            sequences VMNW02000001-VMNW02000195.
            Bacteria and source DNA available from K81G1 (=TBRC 10047 =NBRC
            113896).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2019
            Assembly Method        :: SPAdes v. 3.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 39.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_007713735.2-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:31:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 9,172
            CDSs (total)                      :: 9,110
            Genes (coding)                    :: 9,022
            CDSs (with protein)               :: 9,022
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 4, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3 (16S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 18 of 88
            Pseudo Genes (incomplete)         :: 76 of 88
            Pseudo Genes (internal stop)      :: 2 of 88
            Pseudo Genes (multiple problems)  :: 8 of 88
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9465182
                     /organism="Amycolatopsis acidicola"
                     /mol_type="genomic DNA"
                     /strain="K81G1"
                     /isolation_source="Peat swamp forest"
                     /type_material="type strain of Amycolatopsis acidicola"
                     /db_xref="taxon:2596893"
                     /geo_loc_name="Thailand: Surat Thani province"
                     /collection_date="2018"
WGS         VMNW02000001-VMNW02000195
WGS_SCAFLD  NZ_VMNW02000001-NZ_VMNW02000195
//
LOCUS       NZ_JAMJPM010000000   3993388 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus amyloliquefaciens strain LMG12263, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAMJPM000000000
VERSION     NZ_JAMJPM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN28557233
            Assembly: GCF_026156345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus amyloliquefaciens
  ORGANISM  Bacillus amyloliquefaciens
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus amyloliquefaciens group.
REFERENCE   1  (bases 1 to 3993388)
  AUTHORS   Nohr-Meldgaard,K., Struve,C., Ingmer,H. and Agerso,Y.
  TITLE     Intrinsic tet(L) sub-class in Bacillus velezensis and Bacillus
            amyloliquefaciens is associated with a reduced susceptibility
            toward tetracycline
  JOURNAL   Front Microbiol 13, 966016 (2022)
   PUBMED   35992677
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3993388)
  AUTHORS   Noehr-Meldgaard,K. and Agerso,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAY-2022) Microbial Assays & Safety, Chr. Hansen,
            Boege Alle 10, Hoersholm 2970, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAMJPM000000000.1.
            The Bacillus amyloliquefaciens whole genome shotgun (WGS) project
            has the project accession NZ_JAMJPM000000000.  This version of the
            project (01) has the accession number NZ_JAMJPM010000000, and
            consists of sequences JAMJPM010000001-JAMJPM010000030.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: GS De Novo Assembler v. 1.3
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 60x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_026156345.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:01:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,227
            CDSs (total)                      :: 4,137
            Genes (coding)                    :: 3,971
            CDSs (with protein)               :: 3,971
            Genes (RNA)                       :: 90
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 94 of 166
            Pseudo Genes (incomplete)         :: 78 of 166
            Pseudo Genes (internal stop)      :: 19 of 166
            Pseudo Genes (multiple problems)  :: 24 of 166
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3993388
                     /organism="Bacillus amyloliquefaciens"
                     /mol_type="genomic DNA"
                     /strain="LMG12263"
                     /db_xref="taxon:1390"
WGS         JAMJPM010000001-JAMJPM010000030
WGS_SCAFLD  NZ_JAMJPM010000001-NZ_JAMJPM010000030
//
LOCUS       NZ_SMKU01000000     10227186 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Actinomadura rubrisoli strain H3C3, whole genome shotgun sequencing
            project.
ACCESSION   NZ_SMKU00000000
VERSION     NZ_SMKU00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11032564
            Assembly: GCF_004349215.1
KEYWORDS    WGS; RefSeq.
SOURCE      Actinomadura rubrisoli
  ORGANISM  Actinomadura rubrisoli
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Streptosporangiales; Thermomonosporaceae; Actinomadura.
REFERENCE   1  (bases 1 to 10227186)
  AUTHORS   Sahin,N., Ay,H. and Saygin,H.
  TITLE     Draft genome sequences of novel Actinobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10227186)
  AUTHORS   Sahin,N., Ay,H. and Saygin,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2019) Molecular Biology and Genetics, Ondokuz
            Mayis University, Kurupelit, Samsun 55139, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMKU00000000.1.
            The Actinomadura rubrisoli whole genome shotgun (WGS) project has
            the project accession NZ_SMKU00000000.  This version of the project
            (01) has the accession number NZ_SMKU01000000, and consists of
            sequences SMKU01000001-SMKU01000805.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. FEB-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 108x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004349215.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:40:28
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 9,709
            CDSs (total)                      :: 9,620
            Genes (coding)                    :: 9,369
            CDSs (with protein)               :: 9,369
            Genes (RNA)                       :: 89
            rRNAs                             :: 5, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1 (5S, 16S)
            partial rRNAs                     :: 1, 4, 3 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 251
            CDSs (without protein)            :: 251
            Pseudo Genes (ambiguous residues) :: 0 of 251
            Pseudo Genes (frameshifted)       :: 39 of 251
            Pseudo Genes (incomplete)         :: 230 of 251
            Pseudo Genes (internal stop)      :: 7 of 251
            Pseudo Genes (multiple problems)  :: 23 of 251
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10227186
                     /organism="Actinomadura rubrisoli"
                     /mol_type="genomic DNA"
                     /strain="H3C3"
                     /isolation_source="soil"
                     /type_material="type strain of Actinomadura rubrisoli"
                     /db_xref="taxon:2530368"
                     /geo_loc_name="Turkey: Malatya"
                     /collection_date="2013-10"
WGS         SMKU01000001-SMKU01000805
WGS_SCAFLD  NZ_SMKU01000001-NZ_SMKU01000805
//
LOCUS       NZ_JALHKX010000000   3958137 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus amyloliquefaciens strain S2784, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JALHKX000000000
VERSION     NZ_JALHKX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27023760
            Assembly: GCF_022832415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus amyloliquefaciens
  ORGANISM  Bacillus amyloliquefaciens
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus amyloliquefaciens group.
REFERENCE   1  (bases 1 to 3958137)
  AUTHORS   Monnerat,R.G., Grynberg,P., Togawa,R.C., Martins,E.S. and
            Queiroz,P.R.
  TITLE     Draft genome of the Bacillus amyloliquefaciens Strain 2784
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3958137)
  AUTHORS   Monnerat,R.G., Grynberg,P., Togawa,R.C., Martins,E.S. and
            Queiroz,P.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2022) Bioinformatics, Embrapa Genetic Resources
            and Biotechnology, Estacao parque biologica, final W5 norte,
            Brasilia, DF 70770-901, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALHKX000000000.1.
            The Bacillus amyloliquefaciens whole genome shotgun (WGS) project
            has the project accession NZ_JALHKX000000000.  This version of the
            project (01) has the accession number NZ_JALHKX010000000, and
            consists of sequences JALHKX010000001-JALHKX010000029.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Laboratorio de bacterias
            entomopatogenicas da Embrapa Recursos Geneticos e Biotecnologia.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 10-MAR-2022
            Assembly Method        :: Unicycler v. v0.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 490.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022832415.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:00:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,970
            CDSs (total)                      :: 3,885
            Genes (coding)                    :: 3,804
            CDSs (with protein)               :: 3,804
            Genes (RNA)                       :: 85
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 77
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 48 of 81
            Pseudo Genes (incomplete)         :: 45 of 81
            Pseudo Genes (internal stop)      :: 10 of 81
            Pseudo Genes (multiple problems)  :: 21 of 81
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3958137
                     /organism="Bacillus amyloliquefaciens"
                     /mol_type="genomic DNA"
                     /strain="S2784"
                     /isolation_source="soil"
                     /db_xref="taxon:1390"
                     /geo_loc_name="Brazil: Goias,Unai"
                     /collection_date="2019-10-10"
WGS         JALHKX010000001-JALHKX010000029
WGS_SCAFLD  NZ_JALHKX010000001-NZ_JALHKX010000029
//
LOCUS       NZ_SNYO01000000      6464934 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Actinomycetospora succinea strain DSM 45775, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SNYO00000000
VERSION     NZ_SNYO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10864758
            Assembly: GCF_004363095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Actinomycetospora succinea
  ORGANISM  Actinomycetospora succinea
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae; Actinomycetospora.
REFERENCE   1  (bases 1 to 6464934)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6464934)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SNYO00000000.1.
            The Actinomycetospora succinea whole genome shotgun (WGS) project
            has the project accession NZ_SNYO00000000.  This version of the
            project (01) has the accession number NZ_SNYO01000000, and consists
            of sequences SNYO01000001-SNYO01000023.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 232.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004363095.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:55:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,352
            CDSs (total)                      :: 6,297
            Genes (coding)                    :: 6,251
            CDSs (with protein)               :: 6,251
            Genes (RNA)                       :: 55
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 46
            CDSs (without protein)            :: 46
            Pseudo Genes (ambiguous residues) :: 0 of 46
            Pseudo Genes (frameshifted)       :: 8 of 46
            Pseudo Genes (incomplete)         :: 39 of 46
            Pseudo Genes (internal stop)      :: 0 of 46
            Pseudo Genes (multiple problems)  :: 1 of 46
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6464934
                     /organism="Actinomycetospora succinea"
                     /mol_type="genomic DNA"
                     /strain="DSM 45775"
                     /culture_collection="DSM:45775"
                     /type_material="type strain of Actinomycetospora succinea"
                     /db_xref="taxon:663603"
WGS         SNYO01000001-SNYO01000023
WGS_SCAFLD  NZ_SNYO01000001-NZ_SNYO01000023
//
LOCUS       NZ_JAODZF010000000   4379770 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aquipseudomonas alcaligenes strain GD04146, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAODZF000000000
VERSION     NZ_JAODZF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525602
            Assembly: GCF_029835115.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aquipseudomonas alcaligenes
  ORGANISM  Aquipseudomonas alcaligenes
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Aquipseudomonas.
REFERENCE   1  (bases 1 to 4379770)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4379770)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODZF000000000.1.
            The Aquipseudomonas alcaligenes whole genome shotgun (WGS) project
            has the project accession NZ_JAODZF000000000.  This version of the
            project (01) has the accession number NZ_JAODZF010000000, and
            consists of sequences JAODZF010000001-JAODZF010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 94.006x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029835115.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:12:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,178
            CDSs (total)                      :: 4,116
            Genes (coding)                    :: 4,088
            CDSs (with protein)               :: 4,088
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 28
            CDSs (without protein)            :: 28
            Pseudo Genes (ambiguous residues) :: 0 of 28
            Pseudo Genes (frameshifted)       :: 7 of 28
            Pseudo Genes (incomplete)         :: 19 of 28
            Pseudo Genes (internal stop)      :: 4 of 28
            Pseudo Genes (multiple problems)  :: 2 of 28
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4379770
                     /organism="Aquipseudomonas alcaligenes"
                     /mol_type="genomic DNA"
                     /strain="GD04146"
                     /isolation_source="surface swab"
                     /db_xref="taxon:43263"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-07-18"
WGS         JAODZF010000001-JAODZF010000036
WGS_SCAFLD  NZ_JAODZF010000001-NZ_JAODZF010000036
//
LOCUS       NZ_JAOBYN010000000   4557868 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aquipseudomonas alcaligenes strain GD03990, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOBYN000000000
VERSION     NZ_JAOBYN000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525446
            Assembly: GCF_029838335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aquipseudomonas alcaligenes
  ORGANISM  Aquipseudomonas alcaligenes
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Aquipseudomonas.
REFERENCE   1  (bases 1 to 4557868)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4557868)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOBYN000000000.1.
            The Aquipseudomonas alcaligenes whole genome shotgun (WGS) project
            has the project accession NZ_JAOBYN000000000.  This version of the
            project (01) has the accession number NZ_JAOBYN010000000, and
            consists of sequences JAOBYN010000001-JAOBYN010000087.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 85.093x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029838335.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:41:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,445
            CDSs (total)                      :: 4,383
            Genes (coding)                    :: 4,294
            CDSs (with protein)               :: 4,294
            Genes (RNA)                       :: 62
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 55
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 21 of 89
            Pseudo Genes (incomplete)         :: 65 of 89
            Pseudo Genes (internal stop)      :: 10 of 89
            Pseudo Genes (multiple problems)  :: 6 of 89
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4557868
                     /organism="Aquipseudomonas alcaligenes"
                     /mol_type="genomic DNA"
                     /strain="GD03990"
                     /isolation_source="surface swab"
                     /db_xref="taxon:43263"
                     /geo_loc_name="USA"
                     /collection_date="2018-05-14"
WGS         JAOBYN010000001-JAOBYN010000087
WGS_SCAFLD  NZ_JAOBYN010000001-NZ_JAOBYN010000087
//
LOCUS       NZ_SMJW01000000      8697534 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Actinomadura bangladeshensis strain DSM 45347, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SMJW00000000
VERSION     NZ_SMJW00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11032588
            Assembly: GCF_004348335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Actinomadura bangladeshensis
  ORGANISM  Actinomadura bangladeshensis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Streptosporangiales; Thermomonosporaceae; Actinomadura.
REFERENCE   1  (bases 1 to 8697534)
  AUTHORS   Sahin,N., Ay,H. and Saygin,H.
  TITLE     Draft genome sequences of novel Actinobacteria
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 8697534)
  AUTHORS   Sahin,N., Ay,H. and Saygin,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2019) Molecular Biology and Genetics, Ondokuz
            Mayis University, Kurupelit, Samsun 55139, Turkey
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SMJW00000000.1.
            The Actinomadura bangladeshensis whole genome shotgun (WGS) project
            has the project accession NZ_SMJW00000000.  This version of the
            project (01) has the accession number NZ_SMJW01000000, and consists
            of sequences SMJW01000001-SMJW01000610.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. FEB-2019
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 78x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004348335.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:58:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 8,394
            CDSs (total)                      :: 8,315
            Genes (coding)                    :: 8,146
            CDSs (with protein)               :: 8,146
            Genes (RNA)                       :: 79
            rRNAs                             :: 5, 3, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 6 (16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 169
            CDSs (without protein)            :: 169
            Pseudo Genes (ambiguous residues) :: 0 of 169
            Pseudo Genes (frameshifted)       :: 9 of 169
            Pseudo Genes (incomplete)         :: 166 of 169
            Pseudo Genes (internal stop)      :: 3 of 169
            Pseudo Genes (multiple problems)  :: 8 of 169
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8697534
                     /organism="Actinomadura bangladeshensis"
                     /mol_type="genomic DNA"
                     /strain="DSM 45347"
                     /isolation_source="Sandy soil"
                     /culture_collection="DSM:45347"
                     /type_material="type strain of Actinomadura
                     bangladeshensis"
                     /db_xref="taxon:453573"
                     /geo_loc_name="Bangladesh: Chokoria"
                     /collection_date="2008-03"
WGS         SMJW01000001-SMJW01000610
WGS_SCAFLD  NZ_SMJW01000001-NZ_SMJW01000610
//
LOCUS       NZ_CBASSQ010000000   2458014 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aquirufa sp. isolate
            PELAGICS-MAG-m2-bin105294-EDVLM-SM-26may22., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBASSQ000000000
VERSION     NZ_CBASSQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459232
            Assembly: GCF_964787485.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aquirufa sp. (freshwater metagenome)
  ORGANISM  Aquirufa sp.
            Bacteria; Pseudomonadati; Bacteroidota; Cytophagia; Cytophagales;
            Flectobacillaceae; Aquirufa.
REFERENCE   1  (bases 1 to 2458014)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBASSQ000000000.1.
            The Aquirufa sp. whole genome shotgun (WGS) project has the project
            accession NZ_CBASSQ000000000.  This version of the project (01) has
            the accession number NZ_CBASSQ010000000, and consists of sequences
            CBASSQ010000001-CBASSQ010000085.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964787485.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:16:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,287
            CDSs (total)                      :: 2,253
            Genes (coding)                    :: 2,235
            CDSs (with protein)               :: 2,235
            Genes (RNA)                       :: 34
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 29
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 0 of 18
            Pseudo Genes (incomplete)         :: 16 of 18
            Pseudo Genes (internal stop)      :: 3 of 18
            Pseudo Genes (multiple problems)  :: 1 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458014
                     /organism="Aquirufa sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin105294-EDVLM-SM-26may22."
                     /isolation_source="Etang des Vallees pond"
                     /db_xref="taxon:2676249"
                     /environmental_sample
                     /geo_loc_name="France"
                     /collection_date="2022-05-26"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBASSQ010000001-CBASSQ010000085
WGS_SCAFLD  NZ_CBASSQ010000001-NZ_CBASSQ010000085
//
LOCUS       NZ_SLWS01000000     12010771 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Actinocrispum wychmicini strain DSM 45934, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SLWS00000000
VERSION     NZ_SLWS00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10864762
            Assembly: GCF_004345645.1
KEYWORDS    WGS; RefSeq.
SOURCE      Actinocrispum wychmicini
  ORGANISM  Actinocrispum wychmicini
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae; Actinocrispum.
REFERENCE   1  (bases 1 to 12010771)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing
            the most valuable type-strain genomes for metagenomic binning,
            comparative biology and taxonomic classification
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 12010771)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SLWS00000000.1.
            The Actinocrispum wychmicini whole genome shotgun (WGS) project has
            the project accession NZ_SLWS00000000.  This version of the project
            (01) has the accession number NZ_SLWS01000000, and consists of
            sequences SLWS01000001-SLWS01000043.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.12.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 125.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004345645.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:00:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 10,819
            CDSs (total)                      :: 10,747
            Genes (coding)                    :: 10,595
            CDSs (with protein)               :: 10,595
            Genes (RNA)                       :: 72
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1 (5S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 32 of 152
            Pseudo Genes (incomplete)         :: 130 of 152
            Pseudo Genes (internal stop)      :: 10 of 152
            Pseudo Genes (multiple problems)  :: 19 of 152
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12010771
                     /organism="Actinocrispum wychmicini"
                     /mol_type="genomic DNA"
                     /strain="DSM 45934"
                     /culture_collection="DSM:45934"
                     /type_material="type strain of Actinocrispum wychmicini"
                     /db_xref="taxon:1213861"
WGS         SLWS01000001-SLWS01000043
WGS_SCAFLD  NZ_SLWS01000001-NZ_SLWS01000043
//
LOCUS       NZ_CBBCJJ010000000   2996300 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aquidulcibacter sp. isolate
            PELAGICS-MAG-m2-bin113398-MILAE-SM-05may20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBCJJ000000000
VERSION     NZ_CBBCJJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459509
            Assembly: GCF_964852515.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aquidulcibacter sp. (freshwater metagenome)
  ORGANISM  Aquidulcibacter sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Caulobacterales; Caulobacteraceae; Aquidulcibacter.
REFERENCE   1  (bases 1 to 2996300)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBCJJ000000000.1.
            The Aquidulcibacter sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBCJJ000000000.  This version of the project
            (01) has the accession number NZ_CBBCJJ010000000, and consists of
            sequences CBBCJJ010000001-CBBCJJ010000226.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964852515.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:22:05
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,959
            CDSs (total)                      :: 2,917
            Genes (coding)                    :: 2,865
            CDSs (with protein)               :: 2,865
            Genes (RNA)                       :: 42
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 37
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 3 of 52
            Pseudo Genes (incomplete)         :: 48 of 52
            Pseudo Genes (internal stop)      :: 8 of 52
            Pseudo Genes (multiple problems)  :: 6 of 52
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996300
                     /organism="Aquidulcibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin113398-MILAE-SM-05may20."
                     /isolation_source="Milada lake"
                     /db_xref="taxon:2052990"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-05-05"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBCJJ010000001-CBBCJJ010000226
WGS_SCAFLD  NZ_CBBCJJ010000001-NZ_CBBCJJ010000226
//
LOCUS       NZ_JAASRU010000000   2709068 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Alkalibacillus almallahensis strain CECT 8373, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAASRU000000000
VERSION     NZ_JAASRU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12025527
            Assembly: GCF_011761495.1
KEYWORDS    WGS; RefSeq.
SOURCE      Alkalibacillus almallahensis
  ORGANISM  Alkalibacillus almallahensis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Alkalibacillus.
REFERENCE   1  (bases 1 to 2709068)
  AUTHORS   Whitman,W.
  TITLE     Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the
            genomes of soil and plant-associated and newly described type
            strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2709068)
  AUTHORS   Whitman,W., Huntemann,M., Clum,A., Wang,J., Palaniappan,K.,
            Ritter,S., Chen,I.-M., Stamatis,D., Reddy,T., O'Malley,R., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2020) Prokaryote Super Program, DOE Joint Genome
            Institute, 1 Cyclotron Road, Mail Stop: 91R0183, Berkeley, CA
            94720, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAASRU000000000.1.
            The Alkalibacillus almallahensis whole genome shotgun (WGS) project
            has the project accession NZ_JAASRU000000000.  This version of the
            project (01) has the accession number NZ_JAASRU010000000, and
            consists of sequences JAASRU010000001-JAASRU010000036.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 553.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011761495.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:06:55
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,872
            CDSs (total)                      :: 2,807
            Genes (coding)                    :: 2,783
            CDSs (with protein)               :: 2,783
            Genes (RNA)                       :: 65
            rRNAs                             :: 5, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 2, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 7 of 24
            Pseudo Genes (incomplete)         :: 19 of 24
            Pseudo Genes (internal stop)      :: 1 of 24
            Pseudo Genes (multiple problems)  :: 2 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709068
                     /organism="Alkalibacillus almallahensis"
                     /mol_type="genomic DNA"
                     /strain="CECT 8373"
                     /type_material="type strain of Alkalibacillus
                     almallahensis"
                     /db_xref="taxon:1379154"
WGS         JAASRU010000001-JAASRU010000036
WGS_SCAFLD  NZ_JAASRU010000001-NZ_JAASRU010000036
//
LOCUS       NZ_CBCNGS010000000   3210081 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aquidulcibacter sp. isolate
            PELAGICS-MAG-vs-bin048036-RIMVE-LM-20jul20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCNGS000000000
VERSION     NZ_CBCNGS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459612
            Assembly: GCF_965102825.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aquidulcibacter sp. (freshwater metagenome)
  ORGANISM  Aquidulcibacter sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Caulobacterales; Caulobacteraceae; Aquidulcibacter.
REFERENCE   1  (bases 1 to 3210081)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCNGS000000000.1.
            The Aquidulcibacter sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCNGS000000000.  This version of the project
            (01) has the accession number NZ_CBCNGS010000000, and consists of
            sequences CBCNGS010000001-CBCNGS010000182.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965102825.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:28:02
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,174
            CDSs (total)                      :: 3,132
            Genes (coding)                    :: 3,050
            CDSs (with protein)               :: 3,050
            Genes (RNA)                       :: 42
            tRNAs                             :: 38
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 15 of 82
            Pseudo Genes (incomplete)         :: 70 of 82
            Pseudo Genes (internal stop)      :: 9 of 82
            Pseudo Genes (multiple problems)  :: 11 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210081
                     /organism="Aquidulcibacter sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-vs-bin048036-RIMVE-LM-20jul20."
                     /isolation_source="Rimov reservoir"
                     /db_xref="taxon:2052990"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-07-20"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCNGS010000001-CBCNGS010000182
WGS_SCAFLD  NZ_CBCNGS010000001-NZ_CBCNGS010000182
//
LOCUS       NZ_JAANAW010000000   4784030 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas hydrophila strain LZ-MG14, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAANAW000000000
VERSION     NZ_JAANAW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14278045
            Assembly: GCF_011603095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas hydrophila
  ORGANISM  Aeromonas hydrophila
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4784030)
  AUTHORS   Ji,J., Kulshreshtha,S., Kakade,A., Majeed,S., Li,X. and Liu,P.
  TITLE     Bioaugmentation of membrane bioreactor with Aeromonas hydrophila
            LZ-MG14 for enhanced malachite green and hexavalent chromium
            removal in textile wastewater
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4784030)
  AUTHORS   Ji,J., Kulshreshtha,S., Kakade,A., Majeed,S., Li,X. and Liu,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2020) School of Life Sciences, Lanzhou
            University, Tianshui Nan Lu #222, Lanzhou, Gansu 730000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAANAW000000000.1.
            The Aeromonas hydrophila whole genome shotgun (WGS) project has the
            project accession NZ_JAANAW000000000.  This version of the project
            (01) has the accession number NZ_JAANAW010000000, and consists of
            sequences JAANAW010000001-JAANAW010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 418.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_011603095.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:00:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,425
            CDSs (total)                      :: 4,323
            Genes (coding)                    :: 4,298
            CDSs (with protein)               :: 4,298
            Genes (RNA)                       :: 102
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 8 of 25
            Pseudo Genes (incomplete)         :: 18 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 5 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4784030
                     /organism="Aeromonas hydrophila"
                     /mol_type="genomic DNA"
                     /strain="LZ-MG14"
                     /isolation_source="activated sludge"
                     /db_xref="taxon:644"
                     /geo_loc_name="China: Lanzhou"
                     /collection_date="2018-12"
WGS         JAANAW010000001-JAANAW010000036
WGS_SCAFLD  NZ_JAANAW010000001-NZ_JAANAW010000036
//
LOCUS       NZ_SOCP01000000     10706011 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Actinophytocola oryzae strain DSM 45499, whole genome shotgun
            sequencing project.
ACCESSION   NZ_SOCP00000000
VERSION     NZ_SOCP00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07621005
            Assembly: GCF_004364325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Actinophytocola oryzae
  ORGANISM  Actinophytocola oryzae
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Pseudonocardiales; Pseudonocardiaceae.
REFERENCE   1  (bases 1 to 10706011)
  AUTHORS   Goeker,M.
  TITLE     Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase
            II (KMG-II): from individual species to whole genera
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10706011)
  AUTHORS   Goeker,M., Huntemann,M., Clum,A., Pillay,M., Palaniappan,K.,
            Varghese,N., Mikhailova,N., Stamatis,D., Reddy,T., Daum,C.,
            Shapiro,N., Ivanova,N., Kyrpides,N. and Woyke,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2019) Prokaryotic Super Group, DOE Joint Genome
            Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            SOCP00000000.1.
            The Actinophytocola oryzae whole genome shotgun (WGS) project has
            the project accession NZ_SOCP00000000.  This version of the project
            (01) has the accession number NZ_SOCP01000000, and consists of
            sequences SOCP01000001-SOCP01000052.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.0
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 65.0x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_004364325.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:17:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 9,568
            CDSs (total)                      :: 9,497
            Genes (coding)                    :: 9,386
            CDSs (with protein)               :: 9,386
            Genes (RNA)                       :: 71
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 26 of 111
            Pseudo Genes (incomplete)         :: 95 of 111
            Pseudo Genes (internal stop)      :: 3 of 111
            Pseudo Genes (multiple problems)  :: 13 of 111
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10706011
                     /organism="Actinophytocola oryzae"
                     /mol_type="genomic DNA"
                     /strain="DSM 45499"
                     /culture_collection="DSM:45499"
                     /type_material="type strain of Actinophytocola oryzae"
                     /db_xref="taxon:502181"
WGS         SOCP01000001-SOCP01000052
WGS_SCAFLD  NZ_SOCP01000001-NZ_SOCP01000052
//
LOCUS       NZ_CBABQS010000000   4903428 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Arcicella sp. isolate
            PELAGICS-MAG-m2-bin106762-GOSKE-SM-22jun22., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBABQS000000000
VERSION     NZ_CBABQS000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459903
            Assembly: GCF_964672035.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Arcicella sp. (freshwater metagenome)
  ORGANISM  Arcicella sp.
            Bacteria; Pseudomonadati; Bacteroidota; Cytophagia; Cytophagales;
            Flectobacillaceae; Arcicella.
REFERENCE   1  (bases 1 to 4903428)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2024) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBABQS000000000.1.
            The Arcicella sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBABQS000000000.  This version of the project
            (01) has the accession number NZ_CBABQS010000000, and consists of
            sequences CBABQS010000001-CBABQS010000178.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964672035.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:38:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,207
            CDSs (total)                      :: 4,173
            Genes (coding)                    :: 4,133
            CDSs (with protein)               :: 4,133
            Genes (RNA)                       :: 34
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 5 of 40
            Pseudo Genes (incomplete)         :: 33 of 40
            Pseudo Genes (internal stop)      :: 8 of 40
            Pseudo Genes (multiple problems)  :: 5 of 40
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4903428
                     /organism="Arcicella sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-m2-bin106762-GOSKE-SM-22jun22."
                     /isolation_source="Gossenkollesee lake"
                     /db_xref="taxon:1872628"
                     /environmental_sample
                     /geo_loc_name="Austria"
                     /collection_date="2022-06-22"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBABQS010000001-CBABQS010000178
WGS_SCAFLD  NZ_CBABQS010000001-NZ_CBABQS010000178
//
LOCUS       NZ_JABJZH010000000   2243118 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aggregatibacter actinomycetemcomitans strain HK 1822, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JABJZH000000000
VERSION     NZ_JABJZH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14969764
            Assembly: GCF_021308705.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aggregatibacter actinomycetemcomitans
  ORGANISM  Aggregatibacter actinomycetemcomitans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pasteurellales; Pasteurellaceae; Aggregatibacter.
REFERENCE   1  (bases 1 to 2243118)
  AUTHORS   Nedergaard,S., Jensen,A.B., Haubek,D. and Norskov-Lauritsen,N.
  TITLE     Multilocus Sequence Typing of Aggregatibacter actinomycetemcomitans
            Competently Depicts the Population Structure of the Species
  JOURNAL   Microbiol Spectr 9 (3), e0108521 (2021)
   PUBMED   34908433
REFERENCE   2  (bases 1 to 2243118)
  AUTHORS   Nedergaard,S. and Noerskov-Lauritsen,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2020) Department of Clinical Microbiology, Aarhus
            University Hospital, Palle Juul-Jensens Boulevard 99, Aarhus N
            8200, Denmark
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JABJZH000000000.1.
            The Aggregatibacter actinomycetemcomitans whole genome shotgun
            (WGS) project has the project accession NZ_JABJZH000000000.  This
            version of the project (01) has the accession number
            NZ_JABJZH010000000, and consists of sequences
            JABJZH010000001-JABJZH010000080.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler: v. 0.4.7
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021308705.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:34:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,248
            CDSs (total)                      :: 2,193
            Genes (coding)                    :: 2,094
            CDSs (with protein)               :: 2,094
            Genes (RNA)                       :: 55
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 47
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 100
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 100
            Pseudo Genes (frameshifted)       :: 43 of 100
            Pseudo Genes (incomplete)         :: 51 of 100
            Pseudo Genes (internal stop)      :: 26 of 100
            Pseudo Genes (multiple problems)  :: 19 of 100
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243118
                     /organism="Aggregatibacter actinomycetemcomitans"
                     /mol_type="genomic DNA"
                     /strain="HK 1822"
                     /host="Homo sapiens"
                     /db_xref="taxon:714"
                     /geo_loc_name="Finland"
                     /collection_date="1995"
                     /collected_by="Umeaa University, Sweden, Sirrka Asikainen"
WGS         JABJZH010000001-JABJZH010000080
WGS_SCAFLD  NZ_JABJZH010000001-NZ_JABJZH010000080
//
LOCUS       NZ_JBNAFV010000000   4901320 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Amaricoccus tamworthensis strain S261, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBNAFV000000000
VERSION     NZ_JBNAFV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN47830178
            Assembly: GCF_049800875.1
KEYWORDS    WGS; RefSeq.
SOURCE      Amaricoccus tamworthensis
  ORGANISM  Amaricoccus tamworthensis
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Rhodobacterales; Paracoccaceae; Amaricoccus.
REFERENCE   1  (bases 1 to 4901320)
  AUTHORS   Zhang,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2025) life sciences and oceanography, Shenzhen
            University, Taoyuan Street, Shenzhen, Guangdong 518055, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBNAFV000000000.1.
            The Amaricoccus tamworthensis whole genome shotgun (WGS) project
            has the project accession NZ_JBNAFV000000000.  This version of the
            project (01) has the accession number NZ_JBNAFV010000000, and
            consists of sequences JBNAFV010000001-JBNAFV010000041.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: AllPaths v. Unknown
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.02x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049800875.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:10:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,625
            CDSs (total)                      :: 4,561
            Genes (coding)                    :: 4,502
            CDSs (with protein)               :: 4,502
            Genes (RNA)                       :: 64
            rRNAs                             :: 4, 4, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 4, 4 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 11 of 59
            Pseudo Genes (incomplete)         :: 49 of 59
            Pseudo Genes (internal stop)      :: 9 of 59
            Pseudo Genes (multiple problems)  :: 9 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4901320
                     /organism="Amaricoccus tamworthensis"
                     /mol_type="genomic DNA"
                     /strain="S261"
                     /host="Ophiactis savignyi"
                     /db_xref="taxon:57002"
                     /geo_loc_name="China: Shenzhen, Qixing Bay"
                     /collection_date="2023-04"
WGS         JBNAFV010000001-JBNAFV010000041
WGS_SCAFLD  NZ_JBNAFV010000001-NZ_JBNAFV010000041
//
LOCUS       NZ_JAGFOU010000000   3096207 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Actinomyces bowdenii strain DSM 15435, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAGFOU000000000
VERSION     NZ_JAGFOU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18384485
            Assembly: GCF_017592395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Actinomyces bowdenii
  ORGANISM  Actinomyces bowdenii
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Actinomycetales; Actinomycetaceae; Actinomyces.
REFERENCE   1  (bases 1 to 3096207)
  AUTHORS   Zhou,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAR-2021) National Institute for Communicable Disease
            Control and Prevention, Chinese Center for Disease Control and
            Prevention, No. 155 Changbai Road, Changping District, Beijing
            102206, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAGFOU000000000.1.
            The Actinomyces bowdenii whole genome shotgun (WGS) project has the
            project accession NZ_JAGFOU000000000.  This version of the project
            (01) has the accession number NZ_JAGFOU010000000, and consists of
            sequences JAGFOU010000001-JAGFOU010000054.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 231x
            Sequencing Technology  :: Illumina HiSeq PE150
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017592395.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:42:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,566
            CDSs (total)                      :: 2,507
            Genes (coding)                    :: 2,475
            CDSs (with protein)               :: 2,475
            Genes (RNA)                       :: 59
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 32
            CDSs (without protein)            :: 32
            Pseudo Genes (ambiguous residues) :: 0 of 32
            Pseudo Genes (frameshifted)       :: 5 of 32
            Pseudo Genes (incomplete)         :: 27 of 32
            Pseudo Genes (internal stop)      :: 3 of 32
            Pseudo Genes (multiple problems)  :: 3 of 32
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096207
                     /organism="Actinomyces bowdenii"
                     /mol_type="genomic DNA"
                     /strain="DSM 15435"
                     /host="dog"
                     /culture_collection="DSM:15435"
                     /type_material="type strain of Actinomyces bowdenii"
                     /db_xref="taxon:131109"
                     /geo_loc_name="United Kingdom"
WGS         JAGFOU010000001-JAGFOU010000054
WGS_SCAFLD  NZ_JAGFOU010000001-NZ_JAGFOU010000054
//
LOCUS       NZ_JAILSJ010000000   2720400 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Anoxybacillus sp. LAT_35, whole genome shotgun sequencing project.
ACCESSION   NZ_JAILSJ000000000
VERSION     NZ_JAILSJ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17072052
            Assembly: GCF_022267225.1
KEYWORDS    WGS; RefSeq.
SOURCE      Anoxybacillus sp. LAT_35
  ORGANISM  Anoxybacillus sp. LAT_35
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Anoxybacillaceae; Anoxybacillus.
REFERENCE   1  (bases 1 to 2720400)
  AUTHORS   Schultz,J., Ramos,R.T.J., Araujo,F.A., Aburjaile,F., Goes-Neto,A.,
            Costa,M., Soares,S., Azevedo,V. and Rosado,A.
  TITLE     Chronicles of Ice and Fire: Unravelling thermophilic Anoxybacillus
            flavithermus diversity, phylogeny, and functions in a geothermal
            environment in Antarctica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2720400)
  AUTHORS   Schultz,J., Ramos,R.T.J., Araujo,F.A., Aburjaile,F., Goes-Neto,A.,
            Costa,M., Soares,S., Azevedo,V. and Rosado,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2021) Microbiology, Universidade Federal do Rio
            de Janeiro, Av. Pedro Calmon, 550, Rio de Janeiro 21941-901, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAILSJ000000000.1.
            The Anoxybacillus sp. LAT_35 whole genome shotgun (WGS) project has
            the project accession NZ_JAILSJ000000000.  This version of the
            project (01) has the accession number NZ_JAILSJ010000000, and
            consists of sequences JAILSJ010000001-JAILSJ010000129.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 310,7092615x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022267225.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 15:17:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,978
            CDSs (total)                      :: 2,837
            Genes (coding)                    :: 2,773
            CDSs (with protein)               :: 2,773
            Genes (RNA)                       :: 141
            rRNAs                             :: 9, 23, 22 (5S, 16S, 23S)
            complete rRNAs                    :: 9 (5S)
            partial rRNAs                     :: 23, 22 (16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 64
            CDSs (without protein)            :: 64
            Pseudo Genes (ambiguous residues) :: 0 of 64
            Pseudo Genes (frameshifted)       :: 20 of 64
            Pseudo Genes (incomplete)         :: 49 of 64
            Pseudo Genes (internal stop)      :: 5 of 64
            Pseudo Genes (multiple problems)  :: 8 of 64
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2720400
                     /organism="Anoxybacillus sp. LAT_35"
                     /mol_type="genomic DNA"
                     /strain="LAT_35"
                     /isolation_source="sediment"
                     /db_xref="taxon:2862722"
                     /geo_loc_name="Antarctica: Fumarole Bay, Deception Island"
                     /lat_lon="62.58024 S 6.042364 W"
                     /collection_date="2015-12-20"
                     /collected_by="Yuri Pinheiro"
WGS         JAILSJ010000001-JAILSJ010000129
WGS_SCAFLD  NZ_JAILSJ010000001-NZ_JAILSJ010000129
//
LOCUS       NZ_JAILSH010000000   2711563 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Anoxybacillus sp. LAT_31, whole genome shotgun sequencing project.
ACCESSION   NZ_JAILSH000000000
VERSION     NZ_JAILSH000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17072050
            Assembly: GCF_022267255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Anoxybacillus sp. LAT_31
  ORGANISM  Anoxybacillus sp. LAT_31
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Anoxybacillaceae; Anoxybacillus.
REFERENCE   1  (bases 1 to 2711563)
  AUTHORS   Schultz,J., Ramos,R.T.J., Araujo,F.A., Aburjaile,F., Goes-Neto,A.,
            Costa,M., Soares,S., Azevedo,V. and Rosado,A.
  TITLE     Chronicles of Ice and Fire: Unravelling thermophilic Anoxybacillus
            flavithermus diversity, phylogeny, and functions in a geothermal
            environment in Antarctica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2711563)
  AUTHORS   Schultz,J., Ramos,R.T.J., Araujo,F.A., Aburjaile,F., Goes-Neto,A.,
            Costa,M., Soares,S., Azevedo,V. and Rosado,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2021) Microbiology, Universidade Federal do Rio
            de Janeiro, Av. Pedro Calmon, 550, Rio de Janeiro 21941-901, Brazil
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAILSH000000000.1.
            The Anoxybacillus sp. LAT_31 whole genome shotgun (WGS) project has
            the project accession NZ_JAILSH000000000.  This version of the
            project (01) has the accession number NZ_JAILSH010000000, and
            consists of sequences JAILSH010000001-JAILSH010000090.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 244,8888462x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022267255.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 15:17:22
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,931
            CDSs (total)                      :: 2,796
            Genes (coding)                    :: 2,741
            CDSs (with protein)               :: 2,741
            Genes (RNA)                       :: 135
            rRNAs                             :: 13, 20, 16 (5S, 16S, 23S)
            complete rRNAs                    :: 10 (5S)
            partial rRNAs                     :: 3, 20, 16 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 19 of 55
            Pseudo Genes (incomplete)         :: 41 of 55
            Pseudo Genes (internal stop)      :: 5 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711563
                     /organism="Anoxybacillus sp. LAT_31"
                     /mol_type="genomic DNA"
                     /strain="LAT_31"
                     /isolation_source="sediment"
                     /db_xref="taxon:2862720"
                     /geo_loc_name="Antarctica: Fumarole Bay, Deception Island"
                     /lat_lon="62.58024 S 6.042364 W"
                     /collection_date="2015-12-20"
                     /collected_by="Yuri Pinheiro"
WGS         JAILSH010000001-JAILSH010000090
WGS_SCAFLD  NZ_JAILSH010000001-NZ_JAILSH010000090
//
LOCUS       NZ_JAODZQ010000000   4880265 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas dhakensis strain GD04135, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAODZQ000000000
VERSION     NZ_JAODZQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525591
            Assembly: GCF_029835335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4880265)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4880265)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODZQ000000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_JAODZQ000000000.  This version of the project
            (01) has the accession number NZ_JAODZQ010000000, and consists of
            sequences JAODZQ010000001-JAODZQ010000066.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 144.832x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029835335.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:12:34
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,584
            CDSs (total)                      :: 4,485
            Genes (coding)                    :: 4,454
            CDSs (with protein)               :: 4,454
            Genes (RNA)                       :: 99
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 31
            CDSs (without protein)            :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 10 of 31
            Pseudo Genes (incomplete)         :: 24 of 31
            Pseudo Genes (internal stop)      :: 4 of 31
            Pseudo Genes (multiple problems)  :: 5 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4880265
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /strain="GD04135"
                     /isolation_source="surface swab"
                     /db_xref="taxon:196024"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-07-18"
WGS         JAODZQ010000001-JAODZQ010000066
WGS_SCAFLD  NZ_JAODZQ010000001-NZ_JAODZQ010000066
//
LOCUS       NZ_JAODZB010000000   4329825 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas caviae strain GD04150, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAODZB000000000
VERSION     NZ_JAODZB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525606
            Assembly: GCF_029834995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas caviae
  ORGANISM  Aeromonas caviae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4329825)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4329825)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODZB000000000.1.
            The Aeromonas caviae whole genome shotgun (WGS) project has the
            project accession NZ_JAODZB000000000.  This version of the project
            (01) has the accession number NZ_JAODZB010000000, and consists of
            sequences JAODZB010000001-JAODZB010000028.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 125.54x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029834995.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:13:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,042
            CDSs (total)                      :: 3,942
            Genes (coding)                    :: 3,917
            CDSs (with protein)               :: 3,917
            Genes (RNA)                       :: 100
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 4 of 25
            Pseudo Genes (incomplete)         :: 20 of 25
            Pseudo Genes (internal stop)      :: 4 of 25
            Pseudo Genes (multiple problems)  :: 3 of 25
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4329825
                     /organism="Aeromonas caviae"
                     /mol_type="genomic DNA"
                     /strain="GD04150"
                     /isolation_source="surface swab"
                     /db_xref="taxon:648"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-07-18"
WGS         JAODZB010000001-JAODZB010000028
WGS_SCAFLD  NZ_JAODZB010000001-NZ_JAODZB010000028
//
LOCUS       NZ_JBXAEW010000000   3879746 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Arthrobacter paludis strain CAU 9143, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JBXAEW000000000
VERSION     NZ_JBXAEW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57173329
            Assembly: GCF_056782315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Arthrobacter paludis
  ORGANISM  Arthrobacter paludis
            Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales;
            Micrococcaceae; Arthrobacter.
REFERENCE   1  (bases 1 to 3879746)
  AUTHORS   Zhao,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2026) MOE Key Laboratory of Coal Environmental
            Pathogenicity and Prevention, Shanxi Medical University, No. 56
            Xinjian South Road, Yingze District, Taiyuan, Shanxi 030001, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXAEW000000000.1.
            The Arthrobacter paludis whole genome shotgun (WGS) project has the
            project accession NZ_JBXAEW000000000.  This version of the project
            (01) has the accession number NZ_JBXAEW010000000, and consists of
            sequences JBXAEW010000001-JBXAEW010000040.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAP denovo v. SOAP denovo 2.04
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 256x
            Sequencing Technology  :: Illumina HiSeq PE150
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056782315.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:54:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,574
            CDSs (total)                      :: 3,512
            Genes (coding)                    :: 3,486
            CDSs (with protein)               :: 3,486
            Genes (RNA)                       :: 62
            rRNAs                             :: 4, 3, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 3, 1 (5S, 16S, 23S)
            tRNAs                             :: 51
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 26
            CDSs (without protein)            :: 26
            Pseudo Genes (ambiguous residues) :: 0 of 26
            Pseudo Genes (frameshifted)       :: 7 of 26
            Pseudo Genes (incomplete)         :: 19 of 26
            Pseudo Genes (internal stop)      :: 2 of 26
            Pseudo Genes (multiple problems)  :: 2 of 26
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3879746
                     /organism="Arthrobacter paludis"
                     /mol_type="genomic DNA"
                     /strain="CAU 9143"
                     /isolation_source="hydric soil"
                     /host="no collected"
                     /type_material="type strain of Arthrobacter paludis"
                     /db_xref="taxon:1069475"
                     /geo_loc_name="South Korea: Seogmo Island"
                     /collection_date="2017"
WGS         JBXAEW010000001-JBXAEW010000040
WGS_SCAFLD  NZ_JBXAEW010000001-NZ_JBXAEW010000040
//
LOCUS       NZ_JAODYX010000000   5677313 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Agrobacterium pusense strain GD04154, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAODYX000000000
VERSION     NZ_JAODYX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525610
            Assembly: GCF_029834945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Agrobacterium pusense
  ORGANISM  Agrobacterium pusense
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Agrobacterium.
REFERENCE   1  (bases 1 to 5677313)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5677313)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAODYX000000000.1.
            The Agrobacterium pusense whole genome shotgun (WGS) project has
            the project accession NZ_JAODYX000000000.  This version of the
            project (01) has the accession number NZ_JAODYX010000000, and
            consists of sequences JAODYX010000001-JAODYX010000060.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 94.244x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029834945.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:23:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,454
            CDSs (total)                      :: 5,402
            Genes (coding)                    :: 5,303
            CDSs (with protein)               :: 5,303
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 99
            CDSs (without protein)            :: 99
            Pseudo Genes (ambiguous residues) :: 0 of 99
            Pseudo Genes (frameshifted)       :: 44 of 99
            Pseudo Genes (incomplete)         :: 62 of 99
            Pseudo Genes (internal stop)      :: 8 of 99
            Pseudo Genes (multiple problems)  :: 13 of 99
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5677313
                     /organism="Agrobacterium pusense"
                     /mol_type="genomic DNA"
                     /strain="GD04154"
                     /isolation_source="surface swab"
                     /db_xref="taxon:648995"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-07-18"
WGS         JAODYX010000001-JAODYX010000060
WGS_SCAFLD  NZ_JAODYX010000001-NZ_JAODYX010000060
//
LOCUS       NZ_JAOEDX010000000   3638778 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD04022, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEDX000000000
VERSION     NZ_JAOEDX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525478
            Assembly: GCF_029837575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3638778)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3638778)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEDX000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOEDX000000000.  This version of the
            project (01) has the accession number NZ_JAOEDX010000000, and
            consists of sequences JAOEDX010000001-JAOEDX010000050.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.025x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029837575.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:28:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,449
            CDSs (total)                      :: 3,384
            Genes (coding)                    :: 3,316
            CDSs (with protein)               :: 3,316
            Genes (RNA)                       :: 65
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 68
            CDSs (without protein)            :: 68
            Pseudo Genes (ambiguous residues) :: 0 of 68
            Pseudo Genes (frameshifted)       :: 22 of 68
            Pseudo Genes (incomplete)         :: 48 of 68
            Pseudo Genes (internal stop)      :: 12 of 68
            Pseudo Genes (multiple problems)  :: 12 of 68
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638778
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD04022"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-06-04"
WGS         JAOEDX010000001-JAOEDX010000050
WGS_SCAFLD  NZ_JAOEDX010000001-NZ_JAOEDX010000050
//
LOCUS       NZ_JBXBAT010000000   4637544 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Alloalcanivorax xenomutans strain NIOT.M2S1WZ1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBXBAT000000000
VERSION     NZ_JBXBAT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN57193473
            Assembly: GCF_056783405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Alloalcanivorax xenomutans
  ORGANISM  Alloalcanivorax xenomutans
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Oceanospirillales; Alcanivoracaceae; Alloalcanivorax.
REFERENCE   1  (bases 1 to 4637544)
  AUTHORS   Verma,P., Abirami,A., Arun Kumar,R., Saghana,K., Harini,D.,
            Thenaruvi,S., Mathibo,L. and Dharani,G.
  TITLE     Genome Insights into Deep-Sea Bacterial Strain NIOT.M2S1WZ1
            Highlight Extensive Hydrocarbon Degradation Potential
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4637544)
  AUTHORS   Verma,P., Abirami,A., Arun Kumar,R., Saghana,K., Harini,D.,
            Thenaruvi,S., Mathibo,L. and Dharani,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-APR-2026) Marine Biotechnology Group, National
            Institute of Ocean Technology, Velachery-Tambaram Main Road,
            Pallikaranai, Chennai, Tamil Nadu 600100, India
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBXBAT000000000.1.
            The Alloalcanivorax xenomutans whole genome shotgun (WGS) project
            has the project accession NZ_JBXBAT000000000.  This version of the
            project (01) has the accession number NZ_JBXBAT010000000, and
            consists of sequences JBXBAT010000001-JBXBAT010000039.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Bacteria or source DNA
            available from Dr. Pankaj Verma, Marine Biotechnology, National
            Institute of Ocean Technology, Pallikaranai, Chennai-600100, Tamil
            Nadu, India.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: FEB-2026
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_056783405.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:57:03
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,301
            CDSs (total)                      :: 4,252
            Genes (coding)                    :: 4,237
            CDSs (with protein)               :: 4,237
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 42
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 15
            CDSs (without protein)            :: 15
            Pseudo Genes (ambiguous residues) :: 0 of 15
            Pseudo Genes (frameshifted)       :: 7 of 15
            Pseudo Genes (incomplete)         :: 12 of 15
            Pseudo Genes (internal stop)      :: 4 of 15
            Pseudo Genes (multiple problems)  :: 6 of 15
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4637544
                     /organism="Alloalcanivorax xenomutans"
                     /mol_type="genomic DNA"
                     /strain="NIOT.M2S1WZ1"
                     /isolation_source="Seawater"
                     /db_xref="taxon:1094342"
                     /geo_loc_name="India: Arabian Sea"
                     /lat_lon="10.504 N 75.398 E"
                     /collection_date="2022-11-12"
WGS         JBXBAT010000001-JBXBAT010000039
WGS_SCAFLD  NZ_JBXBAT010000001-NZ_JBXBAT010000039
//
LOCUS       NZ_JAOECM010000000   3798522 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD04059, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOECM000000000
VERSION     NZ_JAOECM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525515
            Assembly: GCF_029836815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3798522)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3798522)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOECM000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOECM000000000.  This version of the
            project (01) has the accession number NZ_JAOECM010000000, and
            consists of sequences JAOECM010000001-JAOECM010000159.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 127.326x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029836815.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:28:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,640
            CDSs (total)                      :: 3,584
            Genes (coding)                    :: 3,478
            CDSs (with protein)               :: 3,478
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 39 of 106
            Pseudo Genes (incomplete)         :: 75 of 106
            Pseudo Genes (internal stop)      :: 19 of 106
            Pseudo Genes (multiple problems)  :: 21 of 106
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798522
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD04059"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-07-09"
WGS         JAOECM010000001-JAOECM010000159
WGS_SCAFLD  NZ_JAOECM010000001-NZ_JAOECM010000159
//
LOCUS       NZ_JAOECV010000000   3649218 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD04050, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOECV000000000
VERSION     NZ_JAOECV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525506
            Assembly: GCF_029836995.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3649218)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3649218)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOECV000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOECV000000000.  This version of the
            project (01) has the accession number NZ_JAOECV010000000, and
            consists of sequences JAOECV010000001-JAOECV010000149.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 52.529x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029836995.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:27:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,519
            CDSs (total)                      :: 3,450
            Genes (coding)                    :: 3,319
            CDSs (with protein)               :: 3,319
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 44 of 131
            Pseudo Genes (incomplete)         :: 87 of 131
            Pseudo Genes (internal stop)      :: 27 of 131
            Pseudo Genes (multiple problems)  :: 21 of 131
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3649218
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD04050"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-07-09"
WGS         JAOECV010000001-JAOECV010000149
WGS_SCAFLD  NZ_JAOECV010000001-NZ_JAOECV010000149
//
LOCUS       NZ_JAOEEV010000000   3835156 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03998, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOEEV000000000
VERSION     NZ_JAOEEV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525454
            Assembly: GCF_029838025.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3835156)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3835156)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOEEV000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOEEV000000000.  This version of the
            project (01) has the accession number NZ_JAOEEV010000000, and
            consists of sequences JAOEEV010000001-JAOEEV010000161.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 106.389x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029838025.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:36:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,687
            CDSs (total)                      :: 3,635
            Genes (coding)                    :: 3,531
            CDSs (with protein)               :: 3,531
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 45
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 104
            CDSs (without protein)            :: 104
            Pseudo Genes (ambiguous residues) :: 0 of 104
            Pseudo Genes (frameshifted)       :: 38 of 104
            Pseudo Genes (incomplete)         :: 75 of 104
            Pseudo Genes (internal stop)      :: 19 of 104
            Pseudo Genes (multiple problems)  :: 22 of 104
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3835156
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03998"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-05-14"
WGS         JAOEEV010000001-JAOEEV010000161
WGS_SCAFLD  NZ_JAOEEV010000001-NZ_JAOEEV010000161
//
LOCUS       NZ_JAOCCE010000000   3570788 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03892, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCCE000000000
VERSION     NZ_JAOCCE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525348
            Assembly: GCF_029840255.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3570788)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3570788)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCCE000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCCE000000000.  This version of the
            project (01) has the accession number NZ_JAOCCE010000000, and
            consists of sequences JAOCCE010000001-JAOCCE010000107.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 125.437x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029840255.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:35:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,404
            CDSs (total)                      :: 3,336
            Genes (coding)                    :: 3,218
            CDSs (with protein)               :: 3,218
            Genes (RNA)                       :: 68
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 38 of 118
            Pseudo Genes (incomplete)         :: 75 of 118
            Pseudo Genes (internal stop)      :: 32 of 118
            Pseudo Genes (multiple problems)  :: 24 of 118
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570788
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03892"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-04-09"
WGS         JAOCCE010000001-JAOCCE010000107
WGS_SCAFLD  NZ_JAOCCE010000001-NZ_JAOCCE010000107
//
LOCUS       NZ_JAOCJQ010000000   2317691 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aliarcobacter butzleri strain GD03692, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCJQ000000000
VERSION     NZ_JAOCJQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525148
            Assembly: GCF_029844345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aliarcobacter butzleri (Arcobacter butzleri)
  ORGANISM  Aliarcobacter butzleri
            Bacteria; Pseudomonadati; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Arcobacteraceae; Aliarcobacter.
REFERENCE   1  (bases 1 to 2317691)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2317691)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCJQ000000000.1.
            The Aliarcobacter butzleri whole genome shotgun (WGS) project has
            the project accession NZ_JAOCJQ000000000.  This version of the
            project (01) has the accession number NZ_JAOCJQ010000000, and
            consists of sequences JAOCJQ010000001-JAOCJQ010000044.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 99.046x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844345.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:48:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,321
            CDSs (total)                      :: 2,271
            Genes (coding)                    :: 2,259
            CDSs (with protein)               :: 2,259
            Genes (RNA)                       :: 50
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 44
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 12
            CDSs (without protein)            :: 12
            Pseudo Genes (ambiguous residues) :: 0 of 12
            Pseudo Genes (frameshifted)       :: 1 of 12
            Pseudo Genes (incomplete)         :: 12 of 12
            Pseudo Genes (internal stop)      :: 1 of 12
            Pseudo Genes (multiple problems)  :: 1 of 12
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317691
                     /organism="Aliarcobacter butzleri"
                     /mol_type="genomic DNA"
                     /strain="GD03692"
                     /isolation_source="surface swab"
                     /db_xref="taxon:28197"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-02-27"
WGS         JAOCJQ010000001-JAOCJQ010000044
WGS_SCAFLD  NZ_JAOCJQ010000001-NZ_JAOCJQ010000044
//
LOCUS       NZ_JAOCCQ010000000   6018012 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Agrobacterium pusense strain GD03880, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCCQ000000000
VERSION     NZ_JAOCCQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525336
            Assembly: GCF_029840505.1
KEYWORDS    WGS; RefSeq.
SOURCE      Agrobacterium pusense
  ORGANISM  Agrobacterium pusense
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Agrobacterium.
REFERENCE   1  (bases 1 to 6018012)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6018012)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCCQ000000000.1.
            The Agrobacterium pusense whole genome shotgun (WGS) project has
            the project accession NZ_JAOCCQ000000000.  This version of the
            project (01) has the accession number NZ_JAOCCQ010000000, and
            consists of sequences JAOCCQ010000001-JAOCCQ010000080.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 28.342x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029840505.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:46:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,846
            CDSs (total)                      :: 5,793
            Genes (coding)                    :: 5,631
            CDSs (with protein)               :: 5,631
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 64 of 162
            Pseudo Genes (incomplete)         :: 111 of 162
            Pseudo Genes (internal stop)      :: 11 of 162
            Pseudo Genes (multiple problems)  :: 23 of 162
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6018012
                     /organism="Agrobacterium pusense"
                     /mol_type="genomic DNA"
                     /strain="GD03880"
                     /isolation_source="surface swab"
                     /db_xref="taxon:648995"
                     /geo_loc_name="USA"
                     /collection_date="2018-04-09"
WGS         JAOCCQ010000001-JAOCCQ010000080
WGS_SCAFLD  NZ_JAOCCQ010000001-NZ_JAOCCQ010000080
//
LOCUS       NZ_JAOCKK010000000   3831934 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03672, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKK000000000
VERSION     NZ_JAOCKK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525128
            Assembly: GCF_029844745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3831934)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3831934)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKK000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCKK000000000.  This version of the
            project (01) has the accession number NZ_JAOCKK010000000, and
            consists of sequences JAOCKK010000001-JAOCKK010000117.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 109.896x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844745.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:58:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,734
            CDSs (total)                      :: 3,670
            Genes (coding)                    :: 3,543
            CDSs (with protein)               :: 3,543
            Genes (RNA)                       :: 64
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 35 of 127
            Pseudo Genes (incomplete)         :: 85 of 127
            Pseudo Genes (internal stop)      :: 28 of 127
            Pseudo Genes (multiple problems)  :: 16 of 127
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831934
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03672"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKK010000001-JAOCKK010000117
WGS_SCAFLD  NZ_JAOCKK010000001-NZ_JAOCKK010000117
//
LOCUS       NZ_JAOCJZ010000000   3833670 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03683, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCJZ000000000
VERSION     NZ_JAOCJZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525139
            Assembly: GCF_029844535.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3833670)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3833670)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCJZ000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCJZ000000000.  This version of the
            project (01) has the accession number NZ_JAOCJZ010000000, and
            consists of sequences JAOCJZ010000001-JAOCJZ010000113.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 63.569x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844535.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 12:58:53
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,737
            CDSs (total)                      :: 3,671
            Genes (coding)                    :: 3,538
            CDSs (with protein)               :: 3,538
            Genes (RNA)                       :: 66
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 38 of 133
            Pseudo Genes (incomplete)         :: 88 of 133
            Pseudo Genes (internal stop)      :: 28 of 133
            Pseudo Genes (multiple problems)  :: 16 of 133
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3833670
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03683"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCJZ010000001-JAOCJZ010000113
WGS_SCAFLD  NZ_JAOCJZ010000001-NZ_JAOCJZ010000113
//
LOCUS       NZ_JAOCKL010000000   3555357 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03671, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKL000000000
VERSION     NZ_JAOCKL000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525127
            Assembly: GCF_029844785.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3555357)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3555357)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKL000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCKL000000000.  This version of the
            project (01) has the accession number NZ_JAOCKL010000000, and
            consists of sequences JAOCKL010000001-JAOCKL010000106.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 92.36x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844785.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:01:23
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,383
            CDSs (total)                      :: 3,315
            Genes (coding)                    :: 3,208
            CDSs (with protein)               :: 3,208
            Genes (RNA)                       :: 68
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 107
            CDSs (without protein)            :: 107
            Pseudo Genes (ambiguous residues) :: 0 of 107
            Pseudo Genes (frameshifted)       :: 35 of 107
            Pseudo Genes (incomplete)         :: 68 of 107
            Pseudo Genes (internal stop)      :: 29 of 107
            Pseudo Genes (multiple problems)  :: 22 of 107
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3555357
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03671"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKL010000001-JAOCKL010000106
WGS_SCAFLD  NZ_JAOCKL010000001-NZ_JAOCKL010000106
//
LOCUS       NZ_JAOCKU010000000   3820784 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03662, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKU000000000
VERSION     NZ_JAOCKU000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525118
            Assembly: GCF_029844945.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3820784)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3820784)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKU000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCKU000000000.  This version of the
            project (01) has the accession number NZ_JAOCKU010000000, and
            consists of sequences JAOCKU010000001-JAOCKU010000169.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 47.363x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844945.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:05:16
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,676
            CDSs (total)                      :: 3,628
            Genes (coding)                    :: 3,526
            CDSs (with protein)               :: 3,526
            Genes (RNA)                       :: 48
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 41
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 102
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 35 of 102
            Pseudo Genes (incomplete)         :: 75 of 102
            Pseudo Genes (internal stop)      :: 20 of 102
            Pseudo Genes (multiple problems)  :: 22 of 102
            CRISPR Arrays                     :: 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820784
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03662"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKU010000001-JAOCKU010000169
WGS_SCAFLD  NZ_JAOCKU010000001-NZ_JAOCKU010000169
//
LOCUS       NZ_JAOCAI010000000   6112696 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Agrobacterium pusense strain GD03943, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCAI000000000
VERSION     NZ_JAOCAI000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525399
            Assembly: GCF_029839305.1
KEYWORDS    WGS; RefSeq.
SOURCE      Agrobacterium pusense
  ORGANISM  Agrobacterium pusense
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Agrobacterium.
REFERENCE   1  (bases 1 to 6112696)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6112696)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCAI000000000.1.
            The Agrobacterium pusense whole genome shotgun (WGS) project has
            the project accession NZ_JAOCAI000000000.  This version of the
            project (01) has the accession number NZ_JAOCAI010000000, and
            consists of sequences JAOCAI010000001-JAOCAI010000160.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 72.746x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029839305.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:05:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,025
            CDSs (total)                      :: 5,972
            Genes (coding)                    :: 5,801
            CDSs (with protein)               :: 5,801
            Genes (RNA)                       :: 53
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 171
            CDSs (without protein)            :: 171
            Pseudo Genes (ambiguous residues) :: 0 of 171
            Pseudo Genes (frameshifted)       :: 60 of 171
            Pseudo Genes (incomplete)         :: 126 of 171
            Pseudo Genes (internal stop)      :: 12 of 171
            Pseudo Genes (multiple problems)  :: 25 of 171
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6112696
                     /organism="Agrobacterium pusense"
                     /mol_type="genomic DNA"
                     /strain="GD03943"
                     /isolation_source="surface swab"
                     /db_xref="taxon:648995"
                     /geo_loc_name="Pakistan"
                     /collection_date="2018-05-01"
WGS         JAOCAI010000001-JAOCAI010000160
WGS_SCAFLD  NZ_JAOCAI010000001-NZ_JAOCAI010000160
//
LOCUS       NZ_CBCJPE010000000   4473844 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aestuariivirga sp. isolate
            PELAGICS-MAG-x4-bin091691-RIMVH-LM-08jun20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBCJPE000000000
VERSION     NZ_CBCJPE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459202
            Assembly: GCF_965077175.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aestuariivirga sp. (freshwater metagenome)
  ORGANISM  Aestuariivirga sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Aestuariivirgaceae; Aestuariivirga.
REFERENCE   1  (bases 1 to 4473844)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBCJPE000000000.1.
            The Aestuariivirga sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBCJPE000000000.  This version of the project
            (01) has the accession number NZ_CBCJPE010000000, and consists of
            sequences CBCJPE010000001-CBCJPE010000150.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_965077175.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:30:38
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,392
            CDSs (total)                      :: 4,340
            Genes (coding)                    :: 4,270
            CDSs (with protein)               :: 4,270
            Genes (RNA)                       :: 52
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 70
            CDSs (without protein)            :: 70
            Pseudo Genes (ambiguous residues) :: 0 of 70
            Pseudo Genes (frameshifted)       :: 14 of 70
            Pseudo Genes (incomplete)         :: 62 of 70
            Pseudo Genes (internal stop)      :: 6 of 70
            Pseudo Genes (multiple problems)  :: 10 of 70
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4473844
                     /organism="Aestuariivirga sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-x4-bin091691-RIMVH-LM-08jun20."
                     /isolation_source="Rimov reservoir"
                     /db_xref="taxon:2650926"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-06-08"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBCJPE010000001-CBCJPE010000150
WGS_SCAFLD  NZ_CBCJPE010000001-NZ_CBCJPE010000150
//
LOCUS       NZ_CBBWOT010000000   3630426 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aestuariivirga sp. isolate
            PELAGICS-MAG-mn-bin005069-MILAE-LM-05may20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBWOT000000000
VERSION     NZ_CBBWOT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459306
            Assembly: GCF_964989205.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aestuariivirga sp. (freshwater metagenome)
  ORGANISM  Aestuariivirga sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Aestuariivirgaceae; Aestuariivirga.
REFERENCE   1  (bases 1 to 3630426)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBWOT000000000.1.
            The Aestuariivirga sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBWOT000000000.  This version of the project
            (01) has the accession number NZ_CBBWOT010000000, and consists of
            sequences CBBWOT010000001-CBBWOT010000074.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964989205.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:28:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,546
            CDSs (total)                      :: 3,497
            Genes (coding)                    :: 3,442
            CDSs (with protein)               :: 3,442
            Genes (RNA)                       :: 49
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 55
            CDSs (without protein)            :: 55
            Pseudo Genes (ambiguous residues) :: 0 of 55
            Pseudo Genes (frameshifted)       :: 9 of 55
            Pseudo Genes (incomplete)         :: 50 of 55
            Pseudo Genes (internal stop)      :: 4 of 55
            Pseudo Genes (multiple problems)  :: 8 of 55
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3630426
                     /organism="Aestuariivirga sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-mn-bin005069-MILAE-LM-05may20."
                     /isolation_source="Milada lake"
                     /db_xref="taxon:2650926"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-05-05"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBWOT010000001-CBBWOT010000074
WGS_SCAFLD  NZ_CBBWOT010000001-NZ_CBBWOT010000074
//
LOCUS       NZ_JAOCKT010000000   5992514 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Agrobacterium pusense strain GD03663, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKT000000000
VERSION     NZ_JAOCKT000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525119
            Assembly: GCF_029844925.1
KEYWORDS    WGS; RefSeq.
SOURCE      Agrobacterium pusense
  ORGANISM  Agrobacterium pusense
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Agrobacterium.
REFERENCE   1  (bases 1 to 5992514)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5992514)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKT000000000.1.
            The Agrobacterium pusense whole genome shotgun (WGS) project has
            the project accession NZ_JAOCKT000000000.  This version of the
            project (01) has the accession number NZ_JAOCKT010000000, and
            consists of sequences JAOCKT010000001-JAOCKT010000148.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50.389x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844925.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:24:35
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,885
            CDSs (total)                      :: 5,829
            Genes (coding)                    :: 5,703
            CDSs (with protein)               :: 5,703
            Genes (RNA)                       :: 56
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 49
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 52 of 126
            Pseudo Genes (incomplete)         :: 78 of 126
            Pseudo Genes (internal stop)      :: 18 of 126
            Pseudo Genes (multiple problems)  :: 18 of 126
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5992514
                     /organism="Agrobacterium pusense"
                     /mol_type="genomic DNA"
                     /strain="GD03663"
                     /isolation_source="surface swab"
                     /db_xref="taxon:648995"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKT010000001-JAOCKT010000148
WGS_SCAFLD  NZ_JAOCKT010000001-NZ_JAOCKT010000148
//
LOCUS       NZ_CAWQPQ010000000   4659330 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas veronii isolate ena-yuan-GCF_021608345.1, whole genome
            shotgun sequencing project.
ACCESSION   NZ_CAWQPQ000000000
VERSION     NZ_CAWQPQ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA115018735
            Assembly: GCF_963897105.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii (Aeromonas ichthiosmia)
  ORGANISM  Aeromonas veronii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4659330)
  AUTHORS   Yuan,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2023) NAU, Nanjing 210095, China, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CAWQPQ000000000.1.
            The Aeromonas veronii whole genome shotgun (WGS) project has the
            project accession NZ_CAWQPQ000000000.  This version of the project
            (01) has the accession number NZ_CAWQPQ010000000, and consists of
            sequences CAWQPQ010000001-CAWQPQ010000037.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_963897105.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:19:21
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,337
            CDSs (total)                      :: 4,226
            Genes (coding)                    :: 4,192
            CDSs (with protein)               :: 4,192
            Genes (RNA)                       :: 111
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 3, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 95
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 11 of 34
            Pseudo Genes (incomplete)         :: 28 of 34
            Pseudo Genes (internal stop)      :: 8 of 34
            Pseudo Genes (multiple problems)  :: 9 of 34
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4659330
                     /organism="Aeromonas veronii"
                     /mol_type="genomic DNA"
                     /isolate="ena-yuan-GCF_021608345.1"
                     /db_xref="taxon:654"
WGS         CAWQPQ010000001-CAWQPQ010000037
WGS_SCAFLD  NZ_CAWQPQ010000001-NZ_CAWQPQ010000037
//
LOCUS       NZ_CBBNIA010000000   3722930 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Aestuariivirga sp. isolate
            PELAGICS-MAG-mn-bin005102-MILAE-SM-05may20., whole genome shotgun
            sequencing project.
ACCESSION   NZ_CBBNIA000000000
VERSION     NZ_CBBNIA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA117459770
            Assembly: GCF_964926865.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Aestuariivirga sp. (freshwater metagenome)
  ORGANISM  Aestuariivirga sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Aestuariivirgaceae; Aestuariivirga.
REFERENCE   1  (bases 1 to 3722930)
  AUTHORS   Wong,H., Bulzu,P., Layoun,P., Shabarova,T., Chiriac,C., Salcher,M.,
            Ghai,R. and Kavagutti S,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JAN-2025) BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF
            HYDROBIO, Laboratory of Microbial Ecology and Evolution, Na Sadkach
            7, Ceske Budejovice, Czech Republic
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            CBBNIA000000000.1.
            The Aestuariivirga sp. whole genome shotgun (WGS) project has the
            project accession NZ_CBBNIA000000000.  This version of the project
            (01) has the accession number NZ_CBBNIA010000000, and consists of
            sequences CBBNIA010000001-CBBNIA010000060.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964926865.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:42:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,633
            CDSs (total)                      :: 3,584
            Genes (coding)                    :: 3,532
            CDSs (with protein)               :: 3,532
            Genes (RNA)                       :: 49
            rRNAs                             :: 2 (5S)
            complete rRNAs                    :: 2 (5S)
            tRNAs                             :: 43
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 52
            CDSs (without protein)            :: 52
            Pseudo Genes (ambiguous residues) :: 0 of 52
            Pseudo Genes (frameshifted)       :: 10 of 52
            Pseudo Genes (incomplete)         :: 47 of 52
            Pseudo Genes (internal stop)      :: 4 of 52
            Pseudo Genes (multiple problems)  :: 9 of 52
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3722930
                     /organism="Aestuariivirga sp."
                     /mol_type="genomic DNA"
                     /isolate="PELAGICS-MAG-mn-bin005102-MILAE-SM-05may20."
                     /isolation_source="Milada lake"
                     /db_xref="taxon:2650926"
                     /environmental_sample
                     /geo_loc_name="Czechia"
                     /collection_date="2020-05-05"
                     /metagenome_source="freshwater metagenome"
                     /metagenomic
WGS         CBBNIA010000001-CBBNIA010000060
WGS_SCAFLD  NZ_CBBNIA010000001-NZ_CBBNIA010000060
//
LOCUS       NZ_JAOCKW010000000   3847148 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03660, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKW000000000
VERSION     NZ_JAOCKW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525116
            Assembly: GCF_029844985.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3847148)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3847148)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKW000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCKW000000000.  This version of the
            project (01) has the accession number NZ_JAOCKW010000000, and
            consists of sequences JAOCKW010000001-JAOCKW010000152.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 150.066x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844985.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:43:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,714
            CDSs (total)                      :: 3,645
            Genes (coding)                    :: 3,535
            CDSs (with protein)               :: 3,535
            Genes (RNA)                       :: 69
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 62
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 39 of 110
            Pseudo Genes (incomplete)         :: 79 of 110
            Pseudo Genes (internal stop)      :: 19 of 110
            Pseudo Genes (multiple problems)  :: 21 of 110
            CRISPR Arrays                     :: 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3847148
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03660"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKW010000001-JAOCKW010000152
WGS_SCAFLD  NZ_JAOCKW010000001-NZ_JAOCKW010000152
//
LOCUS       NZ_JAOCKO010000000   3725068 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Acinetobacter ursingii strain GD03668, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JAOCKO000000000
VERSION     NZ_JAOCKO000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN30525124
            Assembly: GCF_029844825.1
KEYWORDS    WGS; RefSeq.
SOURCE      Acinetobacter ursingii
  ORGANISM  Acinetobacter ursingii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Moraxellales; Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3725068)
  AUTHORS   Diorio-Toth,L.
  TITLE     Intensive care unit water sources are persistently colonized with
            multi-drug resistant bacteria and are the site of extensive
            horizontal gene transfer of antibiotic resistance genes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3725068)
  AUTHORS   Diorio-Toth,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2022) Computational and Systems Biology,
            Washington University in St. Louis School of Medicine, 660 S Euclid
            Ave, St. Louis, MO 63110, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAOCKO000000000.1.
            The Acinetobacter ursingii whole genome shotgun (WGS) project has
            the project accession NZ_JAOCKO000000000.  This version of the
            project (01) has the accession number NZ_JAOCKO010000000, and
            consists of sequences JAOCKO010000001-JAOCKO010000144.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Unicycler v. 0.4.9
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 53.837x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029844825.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:45:13
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,556
            CDSs (total)                      :: 3,489
            Genes (coding)                    :: 3,403
            CDSs (with protein)               :: 3,403
            Genes (RNA)                       :: 67
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 37 of 86
            Pseudo Genes (incomplete)         :: 44 of 86
            Pseudo Genes (internal stop)      :: 20 of 86
            Pseudo Genes (multiple problems)  :: 12 of 86
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3725068
                     /organism="Acinetobacter ursingii"
                     /mol_type="genomic DNA"
                     /strain="GD03668"
                     /isolation_source="surface swab"
                     /db_xref="taxon:108980"
                     /geo_loc_name="USA"
                     /collection_date="2018-02-20"
WGS         JAOCKO010000001-JAOCKO010000144
WGS_SCAFLD  NZ_JAOCKO010000001-NZ_JAOCKO010000144
//
LOCUS       NZ_JAAKOG010000000   4533717 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas veronii strain 603748, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAKOG000000000
VERSION     NZ_JAAKOG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14146861
            Assembly: GCF_049171295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii (Aeromonas ichthiosmia)
  ORGANISM  Aeromonas veronii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4533717)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Genome sequencing of Aeromonas species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4533717)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2020) Institute for Genome Sciences, University
            of Maryland, School of Medicine, 670 W. Baltimore St., Baltimore,
            MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAKOG000000000.1.
            The Aeromonas veronii whole genome shotgun (WGS) project has the
            project accession NZ_JAAKOG000000000.  This version of the project
            (01) has the accession number NZ_JAAKOG010000000, and consists of
            sequences JAAKOG010000001-JAAKOG010000039.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 236.19366272751475x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049171295.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:07:24
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,144
            CDSs (total)                      :: 4,068
            Genes (coding)                    :: 4,033
            CDSs (with protein)               :: 4,033
            Genes (RNA)                       :: 76
            rRNAs                             :: 2, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 14 of 35
            Pseudo Genes (incomplete)         :: 21 of 35
            Pseudo Genes (internal stop)      :: 9 of 35
            Pseudo Genes (multiple problems)  :: 7 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4533717
                     /organism="Aeromonas veronii"
                     /mol_type="genomic DNA"
                     /strain="603748"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:654"
                     /geo_loc_name="Bangladesh"
                     /lat_lon="23.6850 N 90.3563 E"
                     /collected_by="University of Maryland, School of Medicine,
                     Center for Vaccine Development"
WGS         JAAKOG010000001-JAAKOG010000039
WGS_SCAFLD  NZ_JAAKOG010000001-NZ_JAAKOG010000039
//
LOCUS       NZ_JAAKRV010000000   4413489 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas veronii strain 602456, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAKRV000000000
VERSION     NZ_JAAKRV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14146768
            Assembly: GCF_049173575.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii (Aeromonas ichthiosmia)
  ORGANISM  Aeromonas veronii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4413489)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Genome sequencing of Aeromonas species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4413489)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2020) Institute for Genome Sciences, University
            of Maryland, School of Medicine, 670 W. Baltimore St., Baltimore,
            MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAKRV000000000.1.
            The Aeromonas veronii whole genome shotgun (WGS) project has the
            project accession NZ_JAAKRV000000000.  This version of the project
            (01) has the accession number NZ_JAAKRV010000000, and consists of
            sequences JAAKRV010000001-JAAKRV010000046.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 262.37724122570603x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049173575.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:01:51
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,112
            CDSs (total)                      :: 4,030
            Genes (coding)                    :: 3,995
            CDSs (with protein)               :: 3,995
            Genes (RNA)                       :: 82
            rRNAs                             :: 2, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2 (5S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 35
            CDSs (without protein)            :: 35
            Pseudo Genes (ambiguous residues) :: 0 of 35
            Pseudo Genes (frameshifted)       :: 6 of 35
            Pseudo Genes (incomplete)         :: 27 of 35
            Pseudo Genes (internal stop)      :: 7 of 35
            Pseudo Genes (multiple problems)  :: 4 of 35
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4413489
                     /organism="Aeromonas veronii"
                     /mol_type="genomic DNA"
                     /strain="602456"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:654"
                     /geo_loc_name="Bangladesh"
                     /lat_lon="23.6850 N 90.3563 E"
                     /collected_by="University of Maryland, School of Medicine,
                     Center for Vaccine Development"
WGS         JAAKRV010000001-JAAKRV010000046
WGS_SCAFLD  NZ_JAAKRV010000001-NZ_JAAKRV010000046
//
LOCUS       NZ_JAAKUK010000000   4813267 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas dhakensis strain 600752, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAKUK000000000
VERSION     NZ_JAAKUK000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14146701
            Assembly: GCF_049175095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas dhakensis
  ORGANISM  Aeromonas dhakensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4813267)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Genome sequencing of Aeromonas species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4813267)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2020) Institute for Genome Sciences, University
            of Maryland, School of Medicine, 670 W. Baltimore St., Baltimore,
            MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAKUK000000000.1.
            The Aeromonas dhakensis whole genome shotgun (WGS) project has the
            project accession NZ_JAAKUK000000000.  This version of the project
            (01) has the accession number NZ_JAAKUK010000000, and consists of
            sequences JAAKUK010000001-JAAKUK010000048.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 293.0063829827018x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049175095.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:06:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,422
            CDSs (total)                      :: 4,332
            Genes (coding)                    :: 4,296
            CDSs (with protein)               :: 4,296
            Genes (RNA)                       :: 90
            rRNAs                             :: 2, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 3, 3 (16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 36
            CDSs (without protein)            :: 36
            Pseudo Genes (ambiguous residues) :: 0 of 36
            Pseudo Genes (frameshifted)       :: 16 of 36
            Pseudo Genes (incomplete)         :: 21 of 36
            Pseudo Genes (internal stop)      :: 6 of 36
            Pseudo Genes (multiple problems)  :: 6 of 36
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4813267
                     /organism="Aeromonas dhakensis"
                     /mol_type="genomic DNA"
                     /strain="600752"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:196024"
                     /geo_loc_name="Bangladesh"
                     /lat_lon="23.6850 N 90.3563 E"
                     /collected_by="University of Maryland, School of Medicine,
                     Center for Vaccine Development"
WGS         JAAKUK010000001-JAAKUK010000048
WGS_SCAFLD  NZ_JAAKUK010000001-NZ_JAAKUK010000048
//
LOCUS       NZ_JAAKPF010000000   4483442 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Aeromonas veronii strain 603395, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JAAKPF000000000
VERSION     NZ_JAAKPF000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14146836
            Assembly: GCF_049171815.1
KEYWORDS    WGS; RefSeq.
SOURCE      Aeromonas veronii (Aeromonas ichthiosmia)
  ORGANISM  Aeromonas veronii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Aeromonadales; Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4483442)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Genome sequencing of Aeromonas species
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4483442)
  AUTHORS   Hazen,T.H., Michalski,J.M., Tennant,S. and Rasko,D.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-FEB-2020) Institute for Genome Sciences, University
            of Maryland, School of Medicine, 670 W. Baltimore St., Baltimore,
            MD 21201, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAAKPF000000000.1.
            The Aeromonas veronii whole genome shotgun (WGS) project has the
            project accession NZ_JAAKPF000000000.  This version of the project
            (01) has the accession number NZ_JAAKPF010000000, and consists of
            sequences JAAKPF010000001-JAAKPF010000040.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 306.6655511546709x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049171815.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:09:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,091
            CDSs (total)                      :: 4,016
            Genes (coding)                    :: 3,983
            CDSs (with protein)               :: 3,983
            Genes (RNA)                       :: 75
            rRNAs                             :: 2, 3, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1, 3, 2 (5S, 16S, 23S)
            tRNAs                             :: 64
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 13 of 33
            Pseudo Genes (incomplete)         :: 19 of 33
            Pseudo Genes (internal stop)      :: 8 of 33
            Pseudo Genes (multiple problems)  :: 6 of 33
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4483442
                     /organism="Aeromonas veronii"
                     /mol_type="genomic DNA"
                     /strain="603395"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:654"
                     /geo_loc_name="Bangladesh"
                     /lat_lon="23.6850 N 90.3563 E"
                     /collected_by="University of Maryland, School of Medicine,
                     Center for Vaccine Development"
WGS         JAAKPF010000001-JAAKPF010000040
WGS_SCAFLD  NZ_JAAKPF010000001-NZ_JAAKPF010000040
//
LOCUS       NZ_JAIMBV010000000   2906813 bp    DNA     linear   ENV 21-APR-2026
DEFINITION  MAG: Alicyclobacillus mali (ex Roth et al. 2021) isolate
            HOT.MB2.97, whole genome shotgun sequencing project.
ACCESSION   NZ_JAIMBV000000000
VERSION     NZ_JAIMBV000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN20023771
            Assembly: GCF_023511315.1
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; RefSeq.
SOURCE      Alicyclobacillus mali (ex Roth et al. 2021) (hot springs
            metagenome)
  ORGANISM  Alicyclobacillus mali (ex Roth et al. 2021)
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Alicyclobacillaceae; Alicyclobacillus.
REFERENCE   1  (bases 1 to 2906813)
  AUTHORS   Levy-Booth,D.J., Navas,L.E., Fetherolf,M.M., Liu,L.Y.,
            Dalhuisen,T., Renneckar,S., Eltis,L.D. and Mohn,W.W.
  TITLE     Discovery of lignin-transforming bacteria and enzymes in
            thermophilic environments using stable isotope probing
  JOURNAL   ISME J 16 (8), 1944-1956 (2022)
   PUBMED   35501417
REFERENCE   2  (bases 1 to 2906813)
  AUTHORS   Levy-Booth,D.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2021) Microbiology and Immunology, University of
            British Columbia, 2350 Health Sciences Mall, Vancouver, BC V6T 1Z3,
            Canada
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JAIMBV000000000.1.
            The Alicyclobacillus mali (ex Roth et al. 2021) whole genome
            shotgun (WGS) project has the project accession NZ_JAIMBV000000000.
            This version of the project (01) has the accession number
            NZ_JAIMBV010000000, and consists of sequences
            JAIMBV010000001-JAIMBV010000256.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 19-DEC-2019
            Assembly Method        :: SPAdes v. 3.11.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 15.4x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023511315.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 15:52:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,988
            CDSs (total)                      :: 2,951
            Genes (coding)                    :: 2,878
            CDSs (with protein)               :: 2,878
            Genes (RNA)                       :: 37
            rRNAs                             :: 2 (5S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 33
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 73
            CDSs (without protein)            :: 73
            Pseudo Genes (ambiguous residues) :: 0 of 73
            Pseudo Genes (frameshifted)       :: 3 of 73
            Pseudo Genes (incomplete)         :: 68 of 73
            Pseudo Genes (internal stop)      :: 3 of 73
            Pseudo Genes (multiple problems)  :: 1 of 73
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2906813
                     /organism="Alicyclobacillus mali (ex Roth et al. 2021)"
                     /mol_type="genomic DNA"
                     /isolate="HOT.MB2.97"
                     /isolation_source="hot spring sediment"
                     /db_xref="taxon:1123961"
                     /environmental_sample
                     /geo_loc_name="Canada:Terrace, Lakelse Hot Spring"
                     /lat_lon="54.358300 N 128.541133 W"
                     /collection_date="2018-08-21"
                     /metagenome_source="hot springs metagenome"
                     /metagenomic
WGS         JAIMBV010000001-JAIMBV010000256
WGS_SCAFLD  NZ_JAIMBV010000001-NZ_JAIMBV010000256
//
LOCUS       NZ_AEFY01000000      4129706 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus atrophaeus BACI051-N, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEFY00000000
VERSION     NZ_AEFY00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02472056
            Assembly: GCF_000204905.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus atrophaeus BACI051-N
  ORGANISM  Bacillus atrophaeus BACI051-N
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4129706)
  AUTHORS   Gibbons,H.S., Broomall,S.M., McNew,L.A., Daligault,H., Chapman,C.,
            Bruce,D., Karavis,M., Krepps,M., McGregor,P.A., Hong,C., Park,K.H.,
            Akmal,A., Feldman,A., Lin,J.S., Chang,W.E., Higgs,B.W., Demirev,P.,
            Lindquist,J., Liem,A., Fochler,E., Read,T.D., Tapia,R., Johnson,S.,
            Bishop-Lilly,K.A., Detter,C., Han,C., Sozhamannan,S.,
            Rosenzweig,C.N. and Skowronski,E.W.
  TITLE     Genomic signatures of strain selection and enhancement in Bacillus
            atrophaeus var. globigii, a historical biowarfare simulant
  JOURNAL   PLoS One 6 (3), e17836 (2011)
   PUBMED   21464989
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4129706)
  AUTHORS   Gibbons,H.S., Broomall,S., McNew,L.A., Karavis,M., McGregor,P.,
            Liem,A., Fochler,E., Donarum,G., Rosenzweig,C.N. and Skowronski,E.
  CONSRTM   Transformational Medical Technologies Program
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2010) Genomics Integrated Product Team, US Army
            Edgewood Chemical Biological Center, 5183 Blackhawk Rd, Aberdeen
            Proving Ground, MD 21010-5424, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEFY00000000.1.
            The Bacillus atrophaeus BACI051-N whole genome shotgun (WGS)
            project has the project accession NZ_AEFY00000000.  This version of
            the project (01) has the accession number NZ_AEFY01000000, and
            consists of sequences AEFY01000001-AEFY01000078.
            Source DNA available from BEI Resources.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.0.01.14
            Genome Coverage       :: 47x
            Sequencing Technology :: 454 FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000204905.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 09:47:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,280
            CDSs (total)                      :: 4,201
            Genes (coding)                    :: 3,999
            CDSs (with protein)               :: 3,999
            Genes (RNA)                       :: 79
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 23S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 71
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 202
            CDSs (without protein)            :: 202
            Pseudo Genes (ambiguous residues) :: 0 of 202
            Pseudo Genes (frameshifted)       :: 117 of 202
            Pseudo Genes (incomplete)         :: 132 of 202
            Pseudo Genes (internal stop)      :: 26 of 202
            Pseudo Genes (multiple problems)  :: 65 of 202
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4129706
                     /organism="Bacillus atrophaeus BACI051-N"
                     /mol_type="genomic DNA"
                     /strain="BACI051-N"
                     /db_xref="taxon:876283"
WGS         AEFY01000001-AEFY01000078
WGS_SCAFLD  NZ_AEFY01000001-NZ_AEFY01000078
//
LOCUS       NZ_NPMO01000000      4296492 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus paralicheniformis strain 7510, whole genome shotgun
            sequencing project.
ACCESSION   NZ_NPMO00000000
VERSION     NZ_NPMO00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07372679
            Assembly: GCF_002272155.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus paralicheniformis
  ORGANISM  Bacillus paralicheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4296492)
  AUTHORS   Kalinowski,J., Ahrens,B., Al-Dilaimi,A., Winkler,A., Wibberg,D.,
            Schleenbecker,U., Ruckert,C., Wolfel,R. and Grass,G.
  TITLE     Isolation and whole genome analysis of endospore-forming bacteria
            from heroin
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4296492)
  AUTHORS   Kalinowski,J., Ahrens,B., Al-Dilaimi,A., Winkler,A., Wibberg,D.,
            Schleenbecker,U., Ruckert,C., Wolfel,R. and Grass,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2017) CeBiTec, Bielefeld University, Sequenz 1,
            Bielefeld 33615, Germany
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NPMO00000000.1.
            The Bacillus paralicheniformis whole genome shotgun (WGS) project
            has the project accession NZ_NPMO00000000.  This version of the
            project (01) has the accession number NZ_NPMO01000000, and consists
            of sequences NPMO01000001-NPMO01000146.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            The organism was changed from 'Bacillus licheniformis' to 'Bacillus
            paralicheniformis' in August 2018.
            
            ##Taxonomic-Update-Statistics-START##
            This Genome (query) :: GCA_002272155.1
            Current Name        :: Bacillus paralicheniformis
            Previous Name       :: Bacillus licheniformis
            Date Updated        :: 2018-08-29
            Analysis Type       :: Average Nucleotide Identity (ANI)
            Analysis 1 (A1)     :: Query vs. TYPE genome for current name
            A1 Genome (subject) :: GCA_001042485.2
            A1 Name             :: Bacillus paralicheniformis
            A1 ANI              :: 99.51672%
            A1 Query Coverage   :: 98.34%
            A1 Subject Coverage :: 93.46%
            Analysis 2 (A2)     :: Query vs. TYPE genome for previous name
            A2 Genome (subject) :: GCA_000011645.1
            A2 Name             :: Bacillus licheniformis
            A2 ANI              :: 94.65682%
            A2 Query Coverage   :: 88.88%
            A2 Subject Coverage :: 90.44%
            ##Taxonomic-Update-Statistics-END##
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 26-JAN-2016
            Assembly Method        :: Newbler v. 2.8
            Assembly Name          :: assembly-7510_v1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 83.61x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002272155.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 09:59:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,363
            CDSs (total)                      :: 4,338
            Genes (coding)                    :: 4,242
            CDSs (with protein)               :: 4,242
            Genes (RNA)                       :: 25
            rRNAs                             :: 2, 1 (16S, 23S)
            partial rRNAs                     :: 2, 1 (16S, 23S)
            tRNAs                             :: 17
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 43 of 96
            Pseudo Genes (incomplete)         :: 72 of 96
            Pseudo Genes (internal stop)      :: 12 of 96
            Pseudo Genes (multiple problems)  :: 26 of 96
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4296492
                     /organism="Bacillus paralicheniformis"
                     /mol_type="genomic DNA"
                     /strain="7510"
                     /isolation_source="uncut heroin sample"
                     /db_xref="taxon:1648923"
WGS         NPMO01000001-NPMO01000146
WGS_SCAFLD  NZ_NPMO01000001-NZ_NPMO01000146
//
LOCUS       NZ_AEFQ01000000      4121167 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus atrophaeus Detrick-2, whole genome shotgun sequencing
            project.
ACCESSION   NZ_AEFQ00000000
VERSION     NZ_AEFQ00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN01816419
            Assembly: GCF_000204745.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus atrophaeus Detrick-2
  ORGANISM  Bacillus atrophaeus Detrick-2
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4121167)
  AUTHORS   Gibbons,H.S., Broomall,S.M., McNew,L.A., Daligault,H., Chapman,C.,
            Bruce,D., Karavis,M., Krepps,M., McGregor,P.A., Hong,C., Park,K.H.,
            Akmal,A., Feldman,A., Lin,J.S., Chang,W.E., Higgs,B.W., Demirev,P.,
            Lindquist,J., Liem,A., Fochler,E., Read,T.D., Tapia,R., Johnson,S.,
            Bishop-Lilly,K.A., Detter,C., Han,C., Sozhamannan,S.,
            Rosenzweig,C.N. and Skowronski,E.W.
  TITLE     Genomic signatures of strain selection and enhancement in Bacillus
            atrophaeus var. globigii, a historical biowarfare simulant
  JOURNAL   PLoS One 6 (3), e17836 (2011)
   PUBMED   21464989
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4121167)
  AUTHORS   Gibbons,H.S., Broomall,S., McNew,L.A., Karavis,M., McGregor,P.,
            Liem,A., Fochler,E., Donarum,G., Rosenzweig,C.N. and Skowronski,E.
  CONSRTM   Transformational Medical Technologies Program
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2010) Genomics Integrated Product Team, US Army
            Edgewood Chemical Biological Center, 5183 Blackhawk Rd, Aberdeen
            Proving Ground, MD 21010-5424, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AEFQ00000000.1.
            The Bacillus atrophaeus Detrick-2 whole genome shotgun (WGS)
            project has the project accession NZ_AEFQ00000000.  This version of
            the project (01) has the accession number NZ_AEFQ01000000, and
            consists of sequences AEFQ01000001-AEFQ01000047.
            Source DNA available from Henry S. Gibbons.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Newbler v. 2.0.01.14
            Genome Coverage       :: 29x
            Sequencing Technology :: 454 FLX
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000204745.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 09:53:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,250
            CDSs (total)                      :: 4,180
            Genes (coding)                    :: 3,958
            CDSs (with protein)               :: 3,958
            Genes (RNA)                       :: 70
            rRNAs                             :: 1, 2 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 62
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 222
            CDSs (without protein)            :: 222
            Pseudo Genes (ambiguous residues) :: 0 of 222
            Pseudo Genes (frameshifted)       :: 141 of 222
            Pseudo Genes (incomplete)         :: 126 of 222
            Pseudo Genes (internal stop)      :: 25 of 222
            Pseudo Genes (multiple problems)  :: 63 of 222
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4121167
                     /organism="Bacillus atrophaeus Detrick-2"
                     /mol_type="genomic DNA"
                     /strain="Detrick-2"
                     /db_xref="taxon:720557"
WGS         AEFQ01000001-AEFQ01000047
WGS_SCAFLD  NZ_AEFQ01000001-NZ_AEFQ01000047
//
LOCUS       NZ_AHDG01000000      5784472 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cereus BAG4X12-1, whole genome shotgun sequencing project.
ACCESSION   NZ_AHDG00000000
VERSION     NZ_AHDG00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02596818
            Assembly: GCF_000291415.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus BAG4X12-1
  ORGANISM  Bacillus cereus BAG4X12-1
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5784472)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Bacillus cereus BAG4X12-1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5784472)
  AUTHORS   Feldgarden,M., Van der Auwera,G.A., Mahillon,J., Duprez,V.,
            Timmery,S., Mattelet,C., Dierick,K., Sun,M., Yu,Z., Zhu,L., Hu,X.,
            Shank,E.B., Swiecicka,I., Hansen,B.M., Andrup,L., Young,S.K.,
            Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A.,
            Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Larimer,J., McCowen,C., Montmayeur,A., Murphy,C., Neiman,D.,
            Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Sisk,P.,
            Sykes,S., Wortman,J., Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            AHDG00000000.1.
            The Bacillus cereus BAG4X12-1 whole genome shotgun (WGS) project
            has the project accession NZ_AHDG00000000.  This version of the
            project (01) has the accession number NZ_AHDG01000000, and consists
            of sequences AHDG01000001-AHDG01000065.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R37753
            Assembly Name         :: Baci_cere_BAG4X12-1_G13198_V1
            Genome Coverage       :: 141.0x
            Sequencing Technology :: illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000291415.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:15:49
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,941
            CDSs (total)                      :: 5,833
            Genes (coding)                    :: 5,611
            CDSs (with protein)               :: 5,611
            Genes (RNA)                       :: 108
            rRNAs                             :: 6, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 6 (5S)
            partial rRNAs                     :: 2, 2 (16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 222
            CDSs (without protein)            :: 222
            Pseudo Genes (ambiguous residues) :: 0 of 222
            Pseudo Genes (frameshifted)       :: 74 of 222
            Pseudo Genes (incomplete)         :: 165 of 222
            Pseudo Genes (internal stop)      :: 43 of 222
            Pseudo Genes (multiple problems)  :: 47 of 222
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5784472
                     /organism="Bacillus cereus BAG4X12-1"
                     /mol_type="genomic DNA"
                     /strain="BAG4X12-1"
                     /db_xref="taxon:1053186"
WGS         AHDG01000001-AHDG01000065
WGS_SCAFLD  NZ_JH791951-NZ_JH791967
//
LOCUS       NZ_WBPI01000000      6129385 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cereus strain CH316_11T, whole genome shotgun sequencing
            project.
ACCESSION   NZ_WBPI00000000
VERSION     NZ_WBPI00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN12879140
            Assembly: GCF_008923605.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 6129385)
  AUTHORS   Olmedo-Alvarez,G., Saldana,S. and Barcelo,D.
  TITLE     Bacillus from the desert of Cuatro Cinegas, Coahuila
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6129385)
  AUTHORS   Olmedo-Alvarez,G., Saldana,S. and Barcelo,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-OCT-2019) Ingenieria Genetica, Cinvestav, Libramiento
            Norte Carretera Irapuato Leon Kilometro 9.6, Carr Panamericana
            Irapuato Leon, Irapuato 36824, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            WBPI00000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_WBPI00000000.  This version of the project
            (01) has the accession number NZ_WBPI01000000, and consists of
            sequences WBPI01000001-WBPI01000027.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2013
            Assembly Method        :: A5-miseq v. 2013
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 50x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_008923605.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 10:58:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,222
            CDSs (total)                      :: 6,101
            Genes (coding)                    :: 5,857
            CDSs (with protein)               :: 5,857
            Genes (RNA)                       :: 121
            rRNAs                             :: 14, 6, 4 (5S, 16S, 23S)
            complete rRNAs                    :: 9 (5S)
            partial rRNAs                     :: 5, 6, 4 (5S, 16S, 23S)
            tRNAs                             :: 92
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 244
            CDSs (without protein)            :: 244
            Pseudo Genes (ambiguous residues) :: 0 of 244
            Pseudo Genes (frameshifted)       :: 119 of 244
            Pseudo Genes (incomplete)         :: 159 of 244
            Pseudo Genes (internal stop)      :: 62 of 244
            Pseudo Genes (multiple problems)  :: 71 of 244
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6129385
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="CH316_11T"
                     /isolation_source="sediment"
                     /db_xref="taxon:1396"
                     /geo_loc_name="Mexico: desert of Cuatro Cienegas,
                     Coahuila"
                     /collection_date="2007"
WGS         WBPI01000001-WBPI01000027
WGS_SCAFLD  NZ_WBPI01000001-NZ_WBPI01000027
//
LOCUS       NZ_NJQK01000000      5357994 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus paranthracis strain 18-1, whole genome shotgun sequencing
            project.
ACCESSION   NZ_NJQK00000000
VERSION     NZ_NJQK00000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07267339
            Assembly: GCF_010994565.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus paranthracis
  ORGANISM  Bacillus paranthracis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5357994)
  AUTHORS   Cui,Y.
  TITLE     Improper usage of probiotics constitutes a potential risk of public
            health
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5357994)
  AUTHORS   Cui,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2017) Beijing Advanced Innovation Center for Food
            Nutrition and Human Health, College of Veterinary Medicine, China
            Agricultural University, Yuanmingyuan West Road, Beijing 100193,
            China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            NJQK00000000.1.
            The Bacillus paranthracis whole genome shotgun (WGS) project has
            the project accession NZ_NJQK00000000.  This version of the project
            (01) has the accession number NZ_NJQK01000000, and consists of
            sequences NJQK01000001-NJQK01000049.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 9.5.3
            Genome Representation  :: Full
            Expected Final Version :: No
            Genome Coverage        :: 20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_010994565.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:02:36
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,559
            CDSs (total)                      :: 5,483
            Genes (coding)                    :: 5,319
            CDSs (with protein)               :: 5,319
            Genes (RNA)                       :: 76
            rRNAs                             :: 3 (5S)
            complete rRNAs                    :: 3 (5S)
            tRNAs                             :: 68
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 164
            CDSs (without protein)            :: 164
            Pseudo Genes (ambiguous residues) :: 0 of 164
            Pseudo Genes (frameshifted)       :: 41 of 164
            Pseudo Genes (incomplete)         :: 130 of 164
            Pseudo Genes (internal stop)      :: 25 of 164
            Pseudo Genes (multiple problems)  :: 28 of 164
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5357994
                     /organism="Bacillus paranthracis"
                     /mol_type="genomic DNA"
                     /strain="18-1"
                     /db_xref="taxon:2026186"
                     /geo_loc_name="China"
                     /collection_date="2016-07"
                     /note="commercial probiotic used for animal"
WGS         NJQK01000001-NJQK01000049
WGS_SCAFLD  NZ_NJQK01000001-NZ_NJQK01000049
//
LOCUS       NZ_JANCML010000000   4294298 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus licheniformis strain X0416_3, whole genome shotgun
            sequencing project.
ACCESSION   NZ_JANCML000000000
VERSION     NZ_JANCML000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN29354288
            Assembly: GCF_024294685.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus licheniformis
  ORGANISM  Bacillus licheniformis
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus.
REFERENCE   1  (bases 1 to 4294298)
  AUTHORS   Xue,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUL-2022) Food Academy, Sichuan Agricultural
            University, Xinkang Road No. 48, Ya'an, Sichuan 625000, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JANCML000000000.1.
            The Bacillus licheniformis whole genome shotgun (WGS) project has
            the project accession NZ_JANCML000000000.  This version of the
            project (01) has the accession number NZ_JANCML010000000, and
            consists of sequences JANCML010000001-JANCML010000026.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Spice.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SOAPdenovo v. 2.0.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100.0x
            Sequencing Technology  :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024294685.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 11:58:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,507
            CDSs (total)                      :: 4,394
            Genes (coding)                    :: 4,306
            CDSs (with protein)               :: 4,306
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 11, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7 (5S)
            partial rRNAs                     :: 1, 11, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 41 of 88
            Pseudo Genes (incomplete)         :: 50 of 88
            Pseudo Genes (internal stop)      :: 15 of 88
            Pseudo Genes (multiple problems)  :: 16 of 88
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4294298
                     /organism="Bacillus licheniformis"
                     /mol_type="genomic DNA"
                     /strain="X0416_3"
                     /isolation_source="spice"
                     /db_xref="taxon:1402"
                     /geo_loc_name="China:Yaan"
                     /collection_date="2021-12-11T16:00:04Z"
WGS         JANCML010000001-JANCML010000026
WGS_SCAFLD  NZ_JANCML010000001-NZ_JANCML010000026
//
LOCUS       NZ_JALLGA010000000   4190283 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_861, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLGA000000000
VERSION     NZ_JALLGA000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764625
            Assembly: GCF_029850335.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 4190283)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4190283)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLGA000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLGA000000000.  This version of the project
            (01) has the accession number NZ_JALLGA010000000, and consists of
            sequences JALLGA010000001-JALLGA010000058.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850335.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:04:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,440
            CDSs (total)                      :: 4,344
            Genes (coding)                    :: 4,054
            CDSs (with protein)               :: 4,054
            Genes (RNA)                       :: 96
            rRNAs                             :: 7, 1, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 4, 2 (5S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 290
            CDSs (without protein)            :: 290
            Pseudo Genes (ambiguous residues) :: 0 of 290
            Pseudo Genes (frameshifted)       :: 143 of 290
            Pseudo Genes (incomplete)         :: 201 of 290
            Pseudo Genes (internal stop)      :: 70 of 290
            Pseudo Genes (multiple problems)  :: 102 of 290
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4190283
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_861"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLGA010000001-JALLGA010000058
WGS_SCAFLD  NZ_JALLGA010000001-NZ_JALLGA010000058
//
LOCUS       NZ_JALLFX010000000   4301499 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_884, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLFX000000000
VERSION     NZ_JALLFX000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764628
            Assembly: GCF_029850295.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 4301499)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4301499)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLFX000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLFX000000000.  This version of the project
            (01) has the accession number NZ_JALLFX010000000, and consists of
            sequences JALLFX010000001-JALLFX010000074.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850295.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:10:20
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,552
            CDSs (total)                      :: 4,460
            Genes (coding)                    :: 4,158
            CDSs (with protein)               :: 4,158
            Genes (RNA)                       :: 92
            rRNAs                             :: 6, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            partial rRNAs                     :: 4, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 302
            CDSs (without protein)            :: 302
            Pseudo Genes (ambiguous residues) :: 0 of 302
            Pseudo Genes (frameshifted)       :: 145 of 302
            Pseudo Genes (incomplete)         :: 210 of 302
            Pseudo Genes (internal stop)      :: 71 of 302
            Pseudo Genes (multiple problems)  :: 102 of 302
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4301499
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_884"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLFX010000001-JALLFX010000074
WGS_SCAFLD  NZ_JALLFX010000001-NZ_JALLFX010000074
//
LOCUS       NZ_JALLFZ010000000   4197905 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_864, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLFZ000000000
VERSION     NZ_JALLFZ000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764626
            Assembly: GCF_029850325.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 4197905)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4197905)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLFZ000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLFZ000000000.  This version of the project
            (01) has the accession number NZ_JALLFZ010000000, and consists of
            sequences JALLFZ010000001-JALLFZ010000087.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850325.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:12:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,451
            CDSs (total)                      :: 4,350
            Genes (coding)                    :: 4,037
            CDSs (with protein)               :: 4,037
            Genes (RNA)                       :: 101
            rRNAs                             :: 9, 2, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 6, 1, 5 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 313
            CDSs (without protein)            :: 313
            Pseudo Genes (ambiguous residues) :: 0 of 313
            Pseudo Genes (frameshifted)       :: 137 of 313
            Pseudo Genes (incomplete)         :: 229 of 313
            Pseudo Genes (internal stop)      :: 69 of 313
            Pseudo Genes (multiple problems)  :: 105 of 313
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4197905
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_864"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLFZ010000001-JALLFZ010000087
WGS_SCAFLD  NZ_JALLFZ010000001-NZ_JALLFZ010000087
//
LOCUS       NZ_JALLGB010000000   4158305 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_852, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLGB000000000
VERSION     NZ_JALLGB000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764624
            Assembly: GCF_029850315.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 4158305)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4158305)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLGB000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLGB000000000.  This version of the project
            (01) has the accession number NZ_JALLGB010000000, and consists of
            sequences JALLGB010000001-JALLGB010000055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850315.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:08:58
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,357
            CDSs (total)                      :: 4,258
            Genes (coding)                    :: 3,972
            CDSs (with protein)               :: 3,972
            Genes (RNA)                       :: 99
            rRNAs                             :: 8, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 2 (5S)
            partial rRNAs                     :: 6, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 286
            CDSs (without protein)            :: 286
            Pseudo Genes (ambiguous residues) :: 0 of 286
            Pseudo Genes (frameshifted)       :: 147 of 286
            Pseudo Genes (incomplete)         :: 190 of 286
            Pseudo Genes (internal stop)      :: 85 of 286
            Pseudo Genes (multiple problems)  :: 114 of 286
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4158305
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_852"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLGB010000001-JALLGB010000055
WGS_SCAFLD  NZ_JALLGB010000001-NZ_JALLGB010000055
//
LOCUS       NZ_JALLFY010000000   3982203 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_868, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLFY000000000
VERSION     NZ_JALLFY000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764627
            Assembly: GCF_029850345.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 3982203)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3982203)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLFY000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLFY000000000.  This version of the project
            (01) has the accession number NZ_JALLFY010000000, and consists of
            sequences JALLFY010000001-JALLFY010000042.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850345.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:09:00
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,160
            CDSs (total)                      :: 4,056
            Genes (coding)                    :: 3,794
            CDSs (with protein)               :: 3,794
            Genes (RNA)                       :: 104
            rRNAs                             :: 8, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 5, 3, 5 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 262
            CDSs (without protein)            :: 262
            Pseudo Genes (ambiguous residues) :: 0 of 262
            Pseudo Genes (frameshifted)       :: 131 of 262
            Pseudo Genes (incomplete)         :: 173 of 262
            Pseudo Genes (internal stop)      :: 78 of 262
            Pseudo Genes (multiple problems)  :: 103 of 262
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3982203
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_868"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLFY010000001-JALLFY010000042
WGS_SCAFLD  NZ_JALLFY010000001-NZ_JALLFY010000042
//
LOCUS       NZ_JALLGE010000000   4214457 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_838, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLGE000000000
VERSION     NZ_JALLGE000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764621
            Assembly: GCF_029850445.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 4214457)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4214457)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLGE000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLGE000000000.  This version of the project
            (01) has the accession number NZ_JALLGE010000000, and consists of
            sequences JALLGE010000001-JALLGE010000072.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850445.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:12:17
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,463
            CDSs (total)                      :: 4,370
            Genes (coding)                    :: 4,074
            CDSs (with protein)               :: 4,074
            Genes (RNA)                       :: 93
            rRNAs                             :: 7, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 1 (5S, 16S)
            partial rRNAs                     :: 4, 3 (5S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 296
            CDSs (without protein)            :: 296
            Pseudo Genes (ambiguous residues) :: 0 of 296
            Pseudo Genes (frameshifted)       :: 142 of 296
            Pseudo Genes (incomplete)         :: 204 of 296
            Pseudo Genes (internal stop)      :: 75 of 296
            Pseudo Genes (multiple problems)  :: 103 of 296
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4214457
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_838"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLGE010000001-JALLGE010000072
WGS_SCAFLD  NZ_JALLGE010000001-NZ_JALLGE010000072
//
LOCUS       NZ_JALLGD010000000   4146909 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_844, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLGD000000000
VERSION     NZ_JALLGD000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764622
            Assembly: GCF_029850435.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 4146909)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4146909)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLGD000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLGD000000000.  This version of the project
            (01) has the accession number NZ_JALLGD010000000, and consists of
            sequences JALLGD010000001-JALLGD010000059.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 70x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850435.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:15:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,355
            CDSs (total)                      :: 4,257
            Genes (coding)                    :: 3,967
            CDSs (with protein)               :: 3,967
            Genes (RNA)                       :: 98
            rRNAs                             :: 7, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 4, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 290
            CDSs (without protein)            :: 290
            Pseudo Genes (ambiguous residues) :: 0 of 290
            Pseudo Genes (frameshifted)       :: 139 of 290
            Pseudo Genes (incomplete)         :: 205 of 290
            Pseudo Genes (internal stop)      :: 71 of 290
            Pseudo Genes (multiple problems)  :: 103 of 290
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4146909
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_844"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLGD010000001-JALLGD010000059
WGS_SCAFLD  NZ_JALLGD010000001-NZ_JALLGD010000059
//
LOCUS       NZ_JALLGC010000000   4139964 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cytotoxicus strain CH_848, whole genome shotgun sequencing
            project.
ACCESSION   NZ_JALLGC000000000
VERSION     NZ_JALLGC000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26764623
            Assembly: GCF_029850395.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cytotoxicus
  ORGANISM  Bacillus cytotoxicus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 4139964)
  AUTHORS   Biggel,M.
  TITLE     Whole genome sequences of Bacillus cytotoxicus isolates from retail
            food
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4139964)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-MAR-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JALLGC000000000.1.
            The Bacillus cytotoxicus whole genome shotgun (WGS) project has the
            project accession NZ_JALLGC000000000.  This version of the project
            (01) has the accession number NZ_JALLGC010000000, and consists of
            sequences JALLGC010000001-JALLGC010000070.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.14.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 80x
            Sequencing Technology  :: Illumina MiniSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_029850395.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 13:14:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,374
            CDSs (total)                      :: 4,272
            Genes (coding)                    :: 3,984
            CDSs (with protein)               :: 3,984
            Genes (RNA)                       :: 102
            rRNAs                             :: 8, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3 (5S)
            partial rRNAs                     :: 5, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 288
            CDSs (without protein)            :: 288
            Pseudo Genes (ambiguous residues) :: 0 of 288
            Pseudo Genes (frameshifted)       :: 140 of 288
            Pseudo Genes (incomplete)         :: 203 of 288
            Pseudo Genes (internal stop)      :: 69 of 288
            Pseudo Genes (multiple problems)  :: 102 of 288
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139964
                     /organism="Bacillus cytotoxicus"
                     /mol_type="genomic DNA"
                     /strain="CH_848"
                     /isolation_source="potato-based retail food product"
                     /db_xref="taxon:580165"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022"
                     /collected_by="Institute for Food Safety and Hygiene,
                     University of Zurich"
WGS         JALLGC010000001-JALLGC010000070
WGS_SCAFLD  NZ_JALLGC010000001-NZ_JALLGC010000070
//
LOCUS       NZ_JBMPZW010000000   5810566 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cereus strain 16, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPZW000000000
VERSION     NZ_JBMPZW000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275374
            Assembly: GCF_049380405.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5810566)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Persistence of specialized bacteria through disinfectant challenge
            during the opening of a new swimming pool
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5810566)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPZW000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPZW000000000.  This version of the project
            (01) has the accession number NZ_JBMPZW010000000, and consists of
            sequences JBMPZW010000001-JBMPZW010000008.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 65x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049380405.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:19:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,955
            CDSs (total)                      :: 5,814
            Genes (coding)                    :: 5,585
            CDSs (with protein)               :: 5,585
            Genes (RNA)                       :: 141
            rRNAs                             :: 13, 13, 13 (5S, 16S, 23S)
            complete rRNAs                    :: 13, 13, 13 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 229
            CDSs (without protein)            :: 229
            Pseudo Genes (ambiguous residues) :: 0 of 229
            Pseudo Genes (frameshifted)       :: 106 of 229
            Pseudo Genes (incomplete)         :: 135 of 229
            Pseudo Genes (internal stop)      :: 34 of 229
            Pseudo Genes (multiple problems)  :: 39 of 229
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5810566
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="16"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-02-19"
                     /collected_by="Ziyu Wan"
WGS         JBMPZW010000001-JBMPZW010000008
WGS_SCAFLD  NZ_JBMPZW010000001-NZ_JBMPZW010000008
//
LOCUS       NZ_JBEFMG010000000   4068195 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cabrialesii subsp. cabrialesii strain TSQ35, whole genome
            shotgun sequencing project.
ACCESSION   NZ_JBEFMG000000000
VERSION     NZ_JBEFMG000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN41698214
            Assembly: GCF_049803355.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cabrialesii subsp. cabrialesii
  ORGANISM  Bacillus cabrialesii subsp. cabrialesii
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cabrialesii.
REFERENCE   1  (bases 1 to 4068195)
  AUTHORS   Montoya-Martinez,A.C., Camacho Barraza,T. and De Los
            Santos-Villalobos,S.
  TITLE     Draft genome sequence of Bacillus cabrialesii subsp. cabrialesii
            strain TSQ35
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4068195)
  AUTHORS   Montoya-Martinez,A.C., Camacho Barraza,T. and De Los
            Santos-Villalobos,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2024) Laboratorio de Biotecnologia del Recurso
            Microbiano, Instituto Tecnologico de Sonora, 5 De Febrero 818 Sur,
            Cd. Obregon, Sonora 85000, Mexico
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBEFMG000000000.1.
            The Bacillus cabrialesii subsp. cabrialesii whole genome shotgun
            (WGS) project has the project accession NZ_JBEFMG000000000.  This
            version of the project (01) has the accession number
            NZ_JBEFMG010000000, and consists of sequences
            JBEFMG010000001-JBEFMG010000045.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            Bacteria and source DNA available from Culture Collection of Native
            Soil and Endophytic Microorganisms (COLMENA), Mexico.
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 2024
            Assembly Method        :: SPAdes v. 3.15.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 90.321x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049803355.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:17:41
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,169
            CDSs (total)                      :: 4,086
            Genes (coding)                    :: 3,972
            CDSs (with protein)               :: 3,972
            Genes (RNA)                       :: 83
            rRNAs                             :: 5, 5, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 5, 4 (5S, 16S)
            tRNAs                             :: 67
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 85 of 114
            Pseudo Genes (incomplete)         :: 47 of 114
            Pseudo Genes (internal stop)      :: 27 of 114
            Pseudo Genes (multiple problems)  :: 40 of 114
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4068195
                     /organism="Bacillus cabrialesii subsp. cabrialesii"
                     /mol_type="genomic DNA"
                     /strain="TSQ35"
                     /isolation_source="soil"
                     /host="wheat"
                     /sub_species="cabrialesii"
                     /db_xref="taxon:3045387"
                     /geo_loc_name="Mexico: Yaqui Valley"
                     /collection_date="2014"
WGS         JBEFMG010000001-JBEFMG010000045
WGS_SCAFLD  NZ_JBEFMG010000001-NZ_JBEFMG010000045
//
LOCUS       NZ_JBMPZM010000000   5827761 bp    DNA     linear   BCT 21-APR-2026
DEFINITION  Bacillus cereus strain 27, whole genome shotgun sequencing project.
ACCESSION   NZ_JBMPZM000000000
VERSION     NZ_JBMPZM000000000.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN46275385
            Assembly: GCF_049369095.1
KEYWORDS    WGS; RefSeq.
SOURCE      Bacillus cereus
  ORGANISM  Bacillus cereus
            Bacteria; Bacillati; Bacillota; Bacilli; Caryophanales;
            Bacillaceae; Bacillus; Bacillus cereus group.
REFERENCE   1  (bases 1 to 5827761)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Analysis of changes in microbial communities and progress in
            pathogenicity levels during the opening and use of swimming pools
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5827761)
  AUTHORS   Wan,Y.Z., Guo,Z.W., Zhang,Y.K. and Wang,Y.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2025) Life Sciences, Shandong University, No. 72,
            Binhai Highway, Qingdao 266237, China
COMMENT     REFSEQ INFORMATION: The reference sequence is identical to
            JBMPZM000000000.1.
            The Bacillus cereus whole genome shotgun (WGS) project has the
            project accession NZ_JBMPZM000000000.  This version of the project
            (01) has the accession number NZ_JBMPZM010000000, and consists of
            sequences JBMPZM010000001-JBMPZM010000017.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. 2.8.1-b1676
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 31.6774x
            Sequencing Technology  :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_049369095.1-RS_2026_04_19
            Annotation Date                   :: 04/19/2026 14:18:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,988
            CDSs (total)                      :: 5,832
            Genes (coding)                    :: 5,580
            CDSs (with protein)               :: 5,580
            Genes (RNA)                       :: 156
            rRNAs                             :: 15, 15, 15 (5S, 16S, 23S)
            complete rRNAs                    :: 14, 15, 15 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 106
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 252
            CDSs (without protein)            :: 252
            Pseudo Genes (ambiguous residues) :: 0 of 252
            Pseudo Genes (frameshifted)       :: 119 of 252
            Pseudo Genes (incomplete)         :: 142 of 252
            Pseudo Genes (internal stop)      :: 37 of 252
            Pseudo Genes (multiple problems)  :: 39 of 252
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5827761
                     /organism="Bacillus cereus"
                     /mol_type="genomic DNA"
                     /strain="27"
                     /isolation_source="swimming pool water"
                     /db_xref="taxon:1396"
                     /geo_loc_name="China: Shandong"
                     /collection_date="2024-03-02"
                     /collected_by="Wanzhen Guo"
WGS         JBMPZM010000001-JBMPZM010000017
WGS_SCAFLD  NZ_JBMPZM010000001-NZ_JBMPZM010000017
//
