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	Release information of H-InvDB_9.0 

	http://www.h-invitational.jp
	
	Dataset fixed on June 25, 2013.
	Released on May 27, 2015. 
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H-InvDB statistics
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1. number of H-Invitational transcripts (HIT)

 all HIT: 220,058

 * protein coding transcripts: 196,634
 * non-protein-coding transcripts: 23,290
 * psudogene candidates: 134

2. number of H-Invitational clusters (HIX)

 all HIX: 48,065

 * protein coding: 39,443
 * non-protein-coding: 8,579
 * psudogene candidates: 43

3. number of H-Invitational proteins (HIP)

 all HIP: 139,573
 
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Human nucleotide datasets
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1. Human full-length cDNA dataset
The dataset contains sequences produced by six institutes. 
All the sequences are already in DDBJ/EMBL/GenBank.

2. Human mRNA dataset
Human mRNA sequences registered in DDBJ/EMBL/GenBank other than full-length cDNA 
were extracted from DDBJ release 93 obtained on June 25, 2013.

3. Human genome dataset
Repeat masked human genome assembly NCBI build 37.1 was obtained from UCSC.
(GRCh37: UCSC hg19, Feb. 2009: human genome NCBI b37.1)

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Databases
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1. RefSeq mRNA
RefSeq curated mRNAs were obtained from NCBI on May 20, 2013.
(RefSeq release 59)

2. Ensembl transcripts
Ensembl transcripts were obtained from Ensembl on May 23, 2013.
Ensembl [release 71]

2. RefSeq protein
RefSeq proteins were obtained from NCBI on May 20, 2013.
(RefSeq release 59)

3. UniProt(SWISS-PROT/TrEMBL)
UniProt(SWISS-PROT/TrEMBL) entries were obtained from EBI on May 23, 2013.
(Release 2013_05)

4. HUGO approved gene symbol  http://www.gene.ucl.ac.uk/nomenclature/
Human gene name data fixed on March 4, 2015.

5. Entrez Gene database http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene
Relations of H-InvDB genes to Entrez Genes were fixed on May 24, 2013.

6. dbSNP 
Relations of H-InvDB genes to dbSNP build137 were fixed on May 20, 2013.

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Contents
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README.txt  
	:this file
acc2hinv_id.txt.gz  
	:Summary of the cDNA data provider and the Accession Number of INSD (DDBJ/EMBL/GenBank) versus the H-Invitational Identifiers
new_del_update_hinvid.txt
	:List of new, deleted and updated H-Invitational IDs
jbirc_ff/  
	:H-InvDB annotated data sets in jbirc-format
	(refer to http://www.h-invitational.jp/hinv/help/help_index.html or
	http://www.h-invitational.jp/hinv/dataset/download.cgi for more information)
jbirc_xml/  
	:H-InvDB annotated data sets in jbirc-xml-format
	(refer to http://www.h-invitational.jp/hinv/help/help_index.html or
	http://www.h-invitational.jp/hinv/dataset/download.cgi for more information)
analysis/
	:H-InvDB annotated dataset by computational analysis
sequence/
	:H-InvDB annotated sequence datasets for transcript, protein and genmoe sequences
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