data_PRD_000882
# 
_pdbx_reference_molecule.prd_id                       PRD_000882 
_pdbx_reference_molecule.name                         "MonodeChloro- Teicoplanin A2-2" 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Glycopeptide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C88 H98 Cl N9 O33" 
_pdbx_reference_molecule.formula_weight               1845.213 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             "TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE MONO SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND BETA-D-GLUCOSAMINE AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED TO THE LATTER. TEICOPLANIN A2-2 HAS 8-METHYLNONANOIC ACID ATTACHED TO GLUCOSAMINE. HERE, TEICOPLANIN A2-2 WAS UNDER RADIATION DAMAGE, WHICH CAUSES THE LOSS OF ONE CHLORINE ATOM." 
_pdbx_reference_molecule.description                  ? 
_pdbx_reference_molecule.representative_PDB_id_code   3VFJ 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_000882 1 1 polymer     "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7" 
PRD_000882 2 2 non-polymer GCS                                     
PRD_000882 3 3 non-polymer T55                                     
PRD_000882 4 4 non-polymer NAG                                     
PRD_000882 5 5 non-polymer MAN                                     
# 
loop_
_pdbx_reference_entity_nonpoly.prd_id 
_pdbx_reference_entity_nonpoly.ref_entity_id 
_pdbx_reference_entity_nonpoly.name 
_pdbx_reference_entity_nonpoly.chem_comp_id 
_pdbx_reference_entity_nonpoly.details 
PRD_000882 2 D-GLUCOSAMINE           GCS ? 
PRD_000882 3 "8-METHYLNONANOIC ACID" T55 ? 
PRD_000882 4 N-ACETYL-D-GLUCOSAMINE  NAG ? 
PRD_000882 5 ALPHA-D-MANNOSE         MAN ? 
# 
loop_
_pdbx_reference_entity_link.prd_id 
_pdbx_reference_entity_link.link_id 
_pdbx_reference_entity_link.link_class 
_pdbx_reference_entity_link.ref_entity_id_1 
_pdbx_reference_entity_link.entity_seq_num_1 
_pdbx_reference_entity_link.comp_id_1 
_pdbx_reference_entity_link.atom_id_1 
_pdbx_reference_entity_link.ref_entity_id_2 
_pdbx_reference_entity_link.entity_seq_num_2 
_pdbx_reference_entity_link.comp_id_2 
_pdbx_reference_entity_link.atom_id_2 
_pdbx_reference_entity_link.value_order 
_pdbx_reference_entity_link.component_1 
_pdbx_reference_entity_link.component_2 
_pdbx_reference_entity_link.details 
_pdbx_reference_entity_link.nonpoly_res_num_1 
_pdbx_reference_entity_link.nonpoly_res_num_2 
PRD_000882 1 PN 1 4 GHP O4  2 ? GCS C1 sing 1 2 ? ? ? 
PRD_000882 2 PN 1 6 OMX OC  4 ? NAG C1 sing 1 4 ? ? ? 
PRD_000882 3 PN 1 7 3FG OD1 5 ? MAN C1 sing 1 5 ? ? ? 
PRD_000882 4 NN 2 ? GCS N2  3 ? T55 C  sing 2 3 ? ? ? 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_000882 1 1  C   GHP 1 N   3MY 2 sing 1 ? ? ? 
PRD_000882 1 2  C5  GHP 1 OD1 3FG 3 sing 1 ? ? ? 
PRD_000882 1 3  OBD 3MY 2 C3  GHP 4 sing 1 ? ? ? 
PRD_000882 1 4  C   3MY 2 N   3FG 3 sing 1 ? ? ? 
PRD_000882 1 5  C   3FG 3 N   GHP 4 sing 1 ? ? ? 
PRD_000882 1 6  C   GHP 4 N   GHP 5 sing 1 ? ? ? 
PRD_000882 1 7  C5  GHP 4 OH  OMX 6 sing 1 ? ? ? 
PRD_000882 1 8  C   GHP 5 N   OMX 6 sing 1 ? ? ? 
PRD_000882 1 9  C3  GHP 5 CG1 3FG 7 sing 1 ? ? ? 
PRD_000882 1 10 C   OMX 6 N   3FG 7 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_000882 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         ? 
_pdbx_reference_entity_poly.db_name         ? 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_000882 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        N 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_000882 1 1 GHP ?   N Y 
PRD_000882 1 2 3MY TYR N Y 
PRD_000882 1 3 3FG ?   N Y 
PRD_000882 1 4 GHP ?   N Y 
PRD_000882 1 5 GHP ?   N Y 
PRD_000882 1 6 OMX TYR N Y 
PRD_000882 1 7 3FG ?   N Y 
# 
_pdbx_reference_entity_src_nat.prd_id                PRD_000882 
_pdbx_reference_entity_src_nat.ref_entity_id         1 
_pdbx_reference_entity_src_nat.ordinal               1 
_pdbx_reference_entity_src_nat.taxid                 1867 
_pdbx_reference_entity_src_nat.organism_scientific   "Actinoplanes teichomyceticus" 
_pdbx_reference_entity_src_nat.source                ? 
_pdbx_reference_entity_src_nat.db_code               ? 
_pdbx_reference_entity_src_nat.db_name               ? 
_pdbx_reference_entity_src_nat.strain                ? 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_000882 2012-08-27 RCSB "Create molecule"    
PRD_000882 2013-02-27 RCSB "Other modification" 
PRD_000882 2013-03-06 RCSB "Initial release"    
PRD_000882 2013-06-03 RCSB "Other modification" 
# 
