data_PRD_000207
# 
_pdbx_reference_molecule.prd_id                       PRD_000207 
_pdbx_reference_molecule.name                         Decaplanin 
_pdbx_reference_molecule.represent_as                 polymer 
_pdbx_reference_molecule.type                         Glycopeptide 
_pdbx_reference_molecule.type_evidence_code           ? 
_pdbx_reference_molecule.class                        Antibiotic 
_pdbx_reference_molecule.class_evidence_code          ? 
_pdbx_reference_molecule.formula                      "C72 H86 Cl N9 O28" 
_pdbx_reference_molecule.formula_weight               1560.950 
_pdbx_reference_molecule.chem_comp_id                 ? 
_pdbx_reference_molecule.release_status               REL 
_pdbx_reference_molecule.replaces                     ? 
_pdbx_reference_molecule.replaced_by                  ? 
_pdbx_reference_molecule.compound_details             
;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE. HERE, DECAPLSNIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND
THE THREE LIGANDS (HET) BGC, ERE AND RAM.
;
_pdbx_reference_molecule.description                  
;DECAPLANIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L,
GLYCOSYLATED
;
_pdbx_reference_molecule.representative_PDB_id_code   1hh3 
# 
loop_
_pdbx_reference_entity_list.prd_id 
_pdbx_reference_entity_list.ref_entity_id 
_pdbx_reference_entity_list.component_id 
_pdbx_reference_entity_list.type 
_pdbx_reference_entity_list.details 
PRD_000207 1 1 polymer     "PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7" 
PRD_000207 2 2 non-polymer ERE                                     
PRD_000207 3 3 non-polymer BGC                                     
PRD_000207 4 4 non-polymer RAM                                     
# 
loop_
_pdbx_reference_entity_nonpoly.prd_id 
_pdbx_reference_entity_nonpoly.ref_entity_id 
_pdbx_reference_entity_nonpoly.name 
_pdbx_reference_entity_nonpoly.chem_comp_id 
_pdbx_reference_entity_nonpoly.details 
PRD_000207 2 4-EPI-VANCOSAMINE ERE ? 
PRD_000207 3 BETA-D-GLUCOSE    BGC ? 
PRD_000207 4 ALPHA-L-RHAMNOSE  RAM ? 
# 
loop_
_pdbx_reference_entity_link.prd_id 
_pdbx_reference_entity_link.link_id 
_pdbx_reference_entity_link.link_class 
_pdbx_reference_entity_link.ref_entity_id_1 
_pdbx_reference_entity_link.entity_seq_num_1 
_pdbx_reference_entity_link.comp_id_1 
_pdbx_reference_entity_link.atom_id_1 
_pdbx_reference_entity_link.ref_entity_id_2 
_pdbx_reference_entity_link.entity_seq_num_2 
_pdbx_reference_entity_link.comp_id_2 
_pdbx_reference_entity_link.atom_id_2 
_pdbx_reference_entity_link.value_order 
_pdbx_reference_entity_link.component_1 
_pdbx_reference_entity_link.component_2 
_pdbx_reference_entity_link.details 
_pdbx_reference_entity_link.nonpoly_res_num_1 
_pdbx_reference_entity_link.nonpoly_res_num_2 
PRD_000207 1 PN 1 4 GHP O4 3 ? BGC C1 sing 1 3 ? ? ? 
PRD_000207 2 PN 1 6 OMX OC 2 ? ERE C1 sing 1 2 ? ? ? 
PRD_000207 3 NN 3 ? BGC O2 4 ? RAM C1 sing 3 4 ? ? ? 
# 
loop_
_pdbx_reference_entity_poly_link.prd_id 
_pdbx_reference_entity_poly_link.ref_entity_id 
_pdbx_reference_entity_poly_link.link_id 
_pdbx_reference_entity_poly_link.atom_id_1 
_pdbx_reference_entity_poly_link.comp_id_1 
_pdbx_reference_entity_poly_link.entity_seq_num_1 
_pdbx_reference_entity_poly_link.atom_id_2 
_pdbx_reference_entity_poly_link.comp_id_2 
_pdbx_reference_entity_poly_link.entity_seq_num_2 
_pdbx_reference_entity_poly_link.value_order 
_pdbx_reference_entity_poly_link.component_id 
_pdbx_reference_entity_poly_link.details 
_pdbx_reference_entity_poly_link.insert_code_1 
_pdbx_reference_entity_poly_link.insert_code_2 
PRD_000207 1 1 C  MLU 1 N   OMZ 2 sing 1 ? ? ? 
PRD_000207 1 2 C  OMZ 2 N   ASN 3 sing 1 ? ? ? 
PRD_000207 1 3 OH OMZ 2 C5  GHP 4 sing 1 ? ? ? 
PRD_000207 1 4 C  ASN 3 N   GHP 4 sing 1 ? ? ? 
PRD_000207 1 5 C  GHP 4 N   GHP 5 sing 1 ? ? ? 
PRD_000207 1 6 C3 GHP 4 OH  OMX 6 sing 1 ? ? ? 
PRD_000207 1 7 C  GHP 5 N   OMX 6 sing 1 ? ? ? 
PRD_000207 1 8 C3 GHP 5 CG1 3FG 7 sing 1 ? ? ? 
PRD_000207 1 9 C  OMX 6 N   3FG 7 sing 1 ? ? ? 
# 
_pdbx_reference_entity_poly.prd_id          PRD_000207 
_pdbx_reference_entity_poly.ref_entity_id   1 
_pdbx_reference_entity_poly.db_code         NOR00692 
_pdbx_reference_entity_poly.db_name         NOR 
_pdbx_reference_entity_poly.type            peptide-like 
# 
_pdbx_reference_entity_sequence.prd_id          PRD_000207 
_pdbx_reference_entity_sequence.ref_entity_id   1 
_pdbx_reference_entity_sequence.type            peptide-like 
_pdbx_reference_entity_sequence.NRP_flag        Y 
# 
loop_
_pdbx_reference_entity_poly_seq.prd_id 
_pdbx_reference_entity_poly_seq.ref_entity_id 
_pdbx_reference_entity_poly_seq.num 
_pdbx_reference_entity_poly_seq.mon_id 
_pdbx_reference_entity_poly_seq.parent_mon_id 
_pdbx_reference_entity_poly_seq.hetero 
_pdbx_reference_entity_poly_seq.observed 
PRD_000207 1 1 MLU LEU N Y 
PRD_000207 1 2 OMZ TYR N Y 
PRD_000207 1 3 ASN ASN N Y 
PRD_000207 1 4 GHP PHE N Y 
PRD_000207 1 5 GHP PHE N Y 
PRD_000207 1 6 OMX TYR N Y 
PRD_000207 1 7 3FG PHE N Y 
# 
loop_
_pdbx_reference_entity_src_nat.prd_id 
_pdbx_reference_entity_src_nat.ref_entity_id 
_pdbx_reference_entity_src_nat.ordinal 
_pdbx_reference_entity_src_nat.taxid 
_pdbx_reference_entity_src_nat.organism_scientific 
_pdbx_reference_entity_src_nat.source 
_pdbx_reference_entity_src_nat.db_code 
_pdbx_reference_entity_src_nat.db_name 
_pdbx_reference_entity_src_nat.strain 
PRD_000207 1 1 ?      "Kibdellosporangium deccaensis DSM4763"               URL ?      ?    ? 
PRD_000207 1 2 31958  "Amycolatopsis orientalis"                            ?   430189 NADB ? 
PRD_000207 1 3 100235 "HIL Actinomycete culture Y-86,36910 (DSM 4763)"      ?   1hh3   PDB  ? 
PRD_000207 1 4 163672 "Nocardia nov. sp."                                   ?   420095 NADB ? 
PRD_000207 1 5 208441 "Amycolatopsis decaplanina sp. nov. Strain DSM 44594" DOI ?      ?    ? 
# 
loop_
_pdbx_prd_audit.prd_id 
_pdbx_prd_audit.date 
_pdbx_prd_audit.processing_site 
_pdbx_prd_audit.action_type 
PRD_000207 2012-02-08 RCSB "Create molecule"    
PRD_000207 2012-07-09 PDBE "Other modification" 
PRD_000207 2012-12-12 RCSB "Initial release"    
PRD_000207 2013-06-03 RCSB "Other modification" 
PRD_000207 2017-05-04 RCSB "Other modification" 
PRD_000207 2020-07-29 RCSB "Other modification" 
PRD_000207 2023-09-20 PDBE "Modify audit"       
# 
