#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00100/HG00100.cram --algo AlignmentStat 1000G/HG00100/QCmetrics/HG00100.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355427183	355427183	1.000000	0	355331692	0.999731	52843649751	335931059	50127894431	49219620092	0.000000	0.004071	0.003514	0.000231	150.000000	354413414	0.997416	0	0.500569	0.005986	0.000000	
SECOND_OF_PAIR	355427183	355427183	1.000000	0	354462427	0.997286	52451704083	333277978	49631126629	48689722607	0.000000	0.004226	0.003597	0.000235	150.000000	354413414	0.999862	0	0.500568	0.006177	0.000000	
PAIR	710854366	710854366	1.000000	0	709794119	0.998508	105295353834	669209037	99759021060	97909342699	0.000000	0.004148	0.003556	0.000233	150.000000	708826828	0.998637	0	0.500569	0.006081	0.000000