#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00121/HG00121.cram --algo AlignmentStat 1000G/HG00121/QCmetrics/HG00121.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377787666	377787666	1.000000	0	377691830	0.999746	56137645127	356865727	53225228052	52306838731	0.000000	0.003957	0.003427	0.000228	150.000000	376872963	0.997832	0	0.500603	0.007667	0.000000	
SECOND_OF_PAIR	377787666	377787666	1.000000	0	376923971	0.997714	55680697522	353963479	52637059090	51487471435	0.000000	0.004698	0.004086	0.000233	150.000000	376872963	0.999865	0	0.500847	0.008077	0.000000	
PAIR	755575332	755575332	1.000000	0	754615801	0.998730	111818342649	710829206	105862287142	103794310166	0.000000	0.004326	0.003754	0.000230	150.000000	753745926	0.998847	0	0.500725	0.007872	0.000000