#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00131/HG00131.cram --algo AlignmentStat 1000G/HG00131/QCmetrics/HG00131.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380893185	380893185	1.000000	0	380789321	0.999727	56505691778	358023588	53365871721	52472549823	0.000000	0.004089	0.003398	0.000233	150.000000	379940260	0.997770	0	0.500527	0.006194	0.000000	
SECOND_OF_PAIR	380893185	380893185	1.000000	0	379999745	0.997654	56212696619	355334450	52951561028	51988786240	0.000000	0.004334	0.003565	0.000237	150.000000	379940260	0.999843	0	0.500792	0.006272	0.000000	
PAIR	761786370	761786370	1.000000	0	760789066	0.998691	112718388397	713358038	106317432749	104461336063	0.000000	0.004211	0.003481	0.000235	150.000000	759880520	0.998806	0	0.500659	0.006233	0.000000