#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00145/HG00145.cram --algo AlignmentStat 1000G/HG00145/QCmetrics/HG00145.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	339134396	339134396	1.000000	0	339068862	0.999807	50369067710	318807087	47552612366	46929806924	0.000000	0.003593	0.002925	0.000234	150.000000	338316920	0.997782	0	0.500429	0.006440	0.000000	
SECOND_OF_PAIR	339134396	339134396	1.000000	0	338362020	0.997723	50052670497	315960842	47096135302	46322676439	0.000000	0.004042	0.003281	0.000240	150.000000	338316920	0.999867	0	0.501143	0.006620	0.000000	
PAIR	678268792	678268792	1.000000	0	677430882	0.998765	100421738207	634767929	94648747668	93252483363	0.000000	0.003817	0.003102	0.000237	150.000000	676633840	0.998823	0	0.500785	0.006530	0.000000