#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00155/HG00155.cram --algo AlignmentStat 1000G/HG00155/QCmetrics/HG00155.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341332729	341332729	1.000000	0	341237777	0.999722	50629137754	320325447	47749896726	46896974928	0.000000	0.004447	0.003674	0.000247	150.000000	340466926	0.997741	0	0.500475	0.007206	0.000000	
SECOND_OF_PAIR	341332729	341332729	1.000000	0	340522616	0.997627	50348552378	317833324	47356662349	46424217189	0.000000	0.004649	0.003801	0.000251	150.000000	340466926	0.999836	0	0.500918	0.007345	0.000000	
PAIR	682665458	682665458	1.000000	0	681760393	0.998674	100977690132	638158771	95106559075	93321192117	0.000000	0.004547	0.003737	0.000249	150.000000	680933852	0.998788	0	0.500696	0.007276	0.000000