#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00178/HG00178.cram --algo AlignmentStat 1000G/HG00178/QCmetrics/HG00178.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	359707176	359707176	1.000000	0	359634560	0.999798	53461948920	339641416	50672195402	50033646400	0.000000	0.003428	0.002871	0.000230	150.000000	359000773	0.998238	0	0.500532	0.005958	0.000000	
SECOND_OF_PAIR	359707176	359707176	1.000000	0	359047493	0.998166	53209487767	337405645	50310612488	49476921875	0.000000	0.003908	0.003276	0.000233	150.000000	359000773	0.999870	0	0.500753	0.006076	0.000000	
PAIR	719414352	719414352	1.000000	0	718682053	0.998982	106671436687	677047061	100982807890	99510568275	0.000000	0.003667	0.003073	0.000231	150.000000	718001546	0.999053	0	0.500642	0.006017	0.000000