#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00236/HG00236.cram --algo AlignmentStat 1000G/HG00236/QCmetrics/HG00236.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	437342145	437342145	1.000000	0	437092994	0.999430	64923835921	413319203	61617516369	60150802534	0.000000	0.004920	0.004381	0.000224	150.000000	435686868	0.996783	0	0.500570	0.005363	0.000000	
SECOND_OF_PAIR	437342145	437342145	1.000000	0	435781211	0.996431	64402746959	409787361	60964204348	59351356729	0.000000	0.006058	0.005445	0.000229	150.000000	435686868	0.999784	0	0.500690	0.005657	0.000000	
PAIR	874684290	874684290	1.000000	0	872874205	0.997931	129326582880	823106564	122581720717	119502159263	0.000000	0.005487	0.004910	0.000226	150.000000	871373736	0.998281	0	0.500629	0.005510	0.000000