#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00239/HG00239.cram --algo AlignmentStat 1000G/HG00239/QCmetrics/HG00239.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	395977813	395977813	1.000000	0	395835204	0.999640	58850775249	374427033	55858916345	54806655171	0.000000	0.004204	0.003658	0.000223	150.000000	394615254	0.996918	0	0.500662	0.005764	0.000002	
SECOND_OF_PAIR	395977813	395977813	1.000000	0	394676821	0.996714	58373731548	371505550	55269332092	53648978611	0.000000	0.006355	0.005733	0.000224	150.000000	394615254	0.999844	0	0.500905	0.006025	0.000000	
PAIR	791955626	791955626	1.000000	0	790512025	0.998177	117224506797	745932583	111128248437	108455633782	0.000000	0.005275	0.004690	0.000224	150.000000	789230508	0.998379	0	0.500783	0.005894	0.000001