#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00264/HG00264.cram --algo AlignmentStat 1000G/HG00264/QCmetrics/HG00264.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377184652	377184652	1.000000	0	377070760	0.999698	55996581525	354658405	52891443879	51911383804	0.000000	0.004329	0.003658	0.000228	150.000000	376078637	0.997369	0	0.500608	0.007163	0.000000	
SECOND_OF_PAIR	377184652	377184652	1.000000	0	376139019	0.997228	55577137735	351183784	52311467569	51264827230	0.000000	0.004632	0.003858	0.000234	150.000000	376078637	0.999839	0	0.500995	0.007381	0.000000	
PAIR	754369304	754369304	1.000000	0	753209779	0.998463	111573719260	705842189	105202911448	103176211034	0.000000	0.004480	0.003758	0.000231	150.000000	752157274	0.998603	0	0.500801	0.007272	0.000000