#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00281/HG00281.cram --algo AlignmentStat 1000G/HG00281/QCmetrics/HG00281.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	361396798	361396798	1.000000	0	361325344	0.999802	53707528972	340587246	50804278371	50030853965	0.000000	0.003636	0.003093	0.000227	150.000000	360587293	0.997957	0	0.500569	0.006810	0.000000	
SECOND_OF_PAIR	361396798	361396798	1.000000	0	360633374	0.997888	53266106510	337682978	50224604159	49278278550	0.000000	0.004303	0.003675	0.000233	150.000000	360587293	0.999872	0	0.500884	0.007185	0.000000	
PAIR	722793596	722793596	1.000000	0	721958718	0.998845	106973635482	678270224	101028882530	99309132515	0.000000	0.003968	0.003382	0.000230	150.000000	721174586	0.998914	0	0.500726	0.006997	0.000000