#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00290/HG00290.cram --algo AlignmentStat 1000G/HG00290/QCmetrics/HG00290.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	500362796	500362796	1.000000	0	500255326	0.999785	74335504150	469703694	70059672409	69023863670	0.000000	0.003720	0.003065	0.000228	150.000000	499395101	0.998280	0	0.500447	0.006641	0.000000	
SECOND_OF_PAIR	500362796	500362796	1.000000	0	499461052	0.998198	73789296488	466430902	69371700817	68127302679	0.000000	0.004301	0.003584	0.000233	150.000000	499395101	0.999868	0	0.500501	0.006971	0.000000	
PAIR	1000725592	1000725592	1.000000	0	999716378	0.998992	148124800638	936134596	139431373226	137151166349	0.000000	0.004009	0.003323	0.000231	150.000000	998790202	0.999074	0	0.500474	0.006806	0.000000