#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00328/HG00328.cram --algo AlignmentStat 1000G/HG00328/QCmetrics/HG00328.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	353198121	353198121	1.000000	0	353066331	0.999627	52434299598	334977470	49922663954	48594849370	0.000000	0.005167	0.004638	0.000219	150.000000	352203847	0.997557	0	0.500465	0.006017	0.000000	
SECOND_OF_PAIR	353198121	353198121	1.000000	0	352273584	0.997382	52142548990	332511731	49531868590	48177682925	0.000000	0.005292	0.004695	0.000224	150.000000	352203847	0.999802	0	0.500620	0.006138	0.000000	
PAIR	706396242	706396242	1.000000	0	705339915	0.998505	104576848588	667489201	99454532544	96772532295	0.000000	0.005229	0.004667	0.000222	150.000000	704407694	0.998678	0	0.500542	0.006077	0.000000