#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00329/HG00329.cram --algo AlignmentStat 1000G/HG00329/QCmetrics/HG00329.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398421712	398421712	1.000000	0	398335562	0.999784	59181845747	374570536	55887816538	55064173750	0.000000	0.003802	0.003093	0.000235	150.000000	397207363	0.997168	0	0.500561	0.006629	0.000000	
SECOND_OF_PAIR	398421712	398421712	1.000000	0	397251528	0.997063	58712396526	370883406	55245189310	53983642778	0.000000	0.004958	0.004139	0.000239	150.000000	397207363	0.999889	0	0.501439	0.006775	0.000000	
PAIR	796843424	796843424	1.000000	0	795587090	0.998423	117894242273	745453942	111133005848	109047816528	0.000000	0.004378	0.003613	0.000237	150.000000	794414726	0.998526	0	0.501000	0.006702	0.000000