#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00334/HG00334.cram --algo AlignmentStat 1000G/HG00334/QCmetrics/HG00334.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368313602	368313602	1.000000	0	368234122	0.999784	54783375031	348256117	51982023116	51255265872	0.000000	0.003504	0.002964	0.000220	150.000000	367166995	0.997102	0	0.500679	0.005555	0.000000	
SECOND_OF_PAIR	368313602	368313602	1.000000	0	367208070	0.996998	54327092031	345036482	51393700520	50320065603	0.000000	0.004540	0.003904	0.000223	150.000000	367166995	0.999888	0	0.501014	0.005691	0.000000	
PAIR	736627204	736627204	1.000000	0	735442192	0.998391	109110467062	693292599	103375723636	101575331475	0.000000	0.004020	0.003431	0.000222	150.000000	734333990	0.998493	0	0.500846	0.005623	0.000000