#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00339/HG00339.cram --algo AlignmentStat 1000G/HG00339/QCmetrics/HG00339.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	454725482	454725482	1.000000	0	454565240	0.999648	67473740796	429667194	64027802707	62818062138	0.000000	0.004316	0.003771	0.000218	150.000000	453501851	0.997661	0	0.500528	0.005545	0.000000	
SECOND_OF_PAIR	454725482	454725482	1.000000	0	453592755	0.997509	67115910056	426652667	63547137441	62150484614	0.000000	0.004726	0.004106	0.000221	150.000000	453501851	0.999800	0	0.500714	0.005639	0.000000	
PAIR	909450964	909450964	1.000000	0	908157995	0.998578	134589650852	856319861	127574940148	124968546752	0.000000	0.004521	0.003938	0.000219	150.000000	907003702	0.998729	0	0.500621	0.005592	0.000000