#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00341/HG00341.cram --algo AlignmentStat 1000G/HG00341/QCmetrics/HG00341.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363114628	363114628	1.000000	0	363035496	0.999782	53945344860	341753381	50984816714	50207475726	0.000000	0.003880	0.003196	0.000231	150.000000	362193983	0.997682	0	0.500511	0.006421	0.000000	
SECOND_OF_PAIR	363114628	363114628	1.000000	0	362239604	0.997590	53598835503	338651966	50486304225	49645172772	0.000000	0.004176	0.003397	0.000237	150.000000	362193983	0.999874	0	0.501010	0.006520	0.000000	
PAIR	726229256	726229256	1.000000	0	725275100	0.998686	107544180363	680405347	101471120939	99852648498	0.000000	0.004028	0.003296	0.000234	150.000000	724387966	0.998777	0	0.500760	0.006471	0.000000