#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00344/HG00344.cram --algo AlignmentStat 1000G/HG00344/QCmetrics/HG00344.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385262046	385262046	1.000000	0	385186525	0.999804	57279270466	363597335	54255769743	53463918695	0.000000	0.003749	0.003180	0.000228	150.000000	384502008	0.998223	0	0.500596	0.006066	0.000000	
SECOND_OF_PAIR	385262046	385262046	1.000000	0	384548990	0.998149	56974332143	361067618	53832731251	52953300501	0.000000	0.004112	0.003473	0.000232	150.000000	384502008	0.999878	0	0.500525	0.006236	0.000000	
PAIR	770524092	770524092	1.000000	0	769735515	0.998977	114253602609	724664953	108088500994	106417219196	0.000000	0.003930	0.003326	0.000230	150.000000	769004016	0.999050	0	0.500560	0.006151	0.000000