#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00346/HG00346.cram --algo AlignmentStat 1000G/HG00346/QCmetrics/HG00346.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	346446839	346446839	1.000000	0	346258792	0.999457	51357628934	327013832	48712856270	47679473290	0.000000	0.004802	0.004229	0.000223	150.000000	345363197	0.997414	0	0.500539	0.006519	0.000000	
SECOND_OF_PAIR	346446839	346446839	1.000000	0	345449718	0.997122	51055826501	324210871	48287180490	47292160569	0.000000	0.004662	0.004004	0.000229	150.000000	345363197	0.999750	0	0.500626	0.006689	0.000000	
PAIR	692893678	692893678	1.000000	0	691708510	0.998290	102413455435	651224703	97000036760	94971633859	0.000000	0.004732	0.004117	0.000226	150.000000	690726394	0.998580	0	0.500583	0.006604	0.000000