#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00355/HG00355.cram --algo AlignmentStat 1000G/HG00355/QCmetrics/HG00355.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	533229655	533229655	1.000000	0	533129268	0.999812	79301450236	503056529	75101043906	74250873692	0.000000	0.003336	0.002730	0.000232	150.000000	531489164	0.996924	0	0.500518	0.005723	0.000000	
SECOND_OF_PAIR	533229655	533229655	1.000000	0	531542285	0.996836	78517090987	498242347	74126461090	72796296700	0.000000	0.005582	0.004890	0.000236	150.000000	531489164	0.999900	0	0.501071	0.006152	0.000000	
PAIR	1066459310	1066459310	1.000000	0	1064671553	0.998324	157818541223	1001298876	149227504996	147047170392	0.000000	0.004453	0.003803	0.000234	150.000000	1062978328	0.998410	0	0.500794	0.005938	0.000000