#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00358/HG00358.cram --algo AlignmentStat 1000G/HG00358/QCmetrics/HG00358.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	400980357	400980357	1.000000	0	400886912	0.999767	59520327428	375453414	55991050226	55195725194	0.000000	0.003895	0.003133	0.000244	150.000000	399956861	0.997680	0	0.500465	0.006251	0.000002	
SECOND_OF_PAIR	400980357	400980357	1.000000	0	400016248	0.997596	58971509455	372265687	55313730421	54124383121	0.000000	0.005137	0.004303	0.000253	150.000000	399956861	0.999852	0	0.500917	0.006908	0.000000	
PAIR	801960714	801960714	1.000000	0	800903160	0.998681	118491836883	747719101	111304780647	109320108315	0.000000	0.004513	0.003714	0.000248	150.000000	799913722	0.998765	0	0.500691	0.006579	0.000001