#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00368/HG00368.cram --algo AlignmentStat 1000G/HG00368/QCmetrics/HG00368.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	364869710	364869710	1.000000	0	364668050	0.999447	54131081562	344504601	51319503798	49887621277	0.000000	0.005484	0.004913	0.000218	150.000000	363806016	0.997636	0	0.500576	0.005644	0.000000	
SECOND_OF_PAIR	364869710	364869710	1.000000	0	363897944	0.997337	53874038894	342199736	50972210152	49560451459	0.000000	0.005413	0.004778	0.000223	150.000000	363806016	0.999747	0	0.500397	0.005728	0.000000	
PAIR	729739420	729739420	1.000000	0	728565994	0.998392	108005120456	686704337	102291713950	99448072736	0.000000	0.005448	0.004846	0.000220	150.000000	727612032	0.998691	0	0.500487	0.005686	0.000000