#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00372/HG00372.cram --algo AlignmentStat 1000G/HG00372/QCmetrics/HG00372.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363890225	363890225	1.000000	0	363824698	0.999820	54077843746	341709871	50993710168	50304631111	0.000000	0.003681	0.002965	0.000230	150.000000	362873419	0.997385	0	0.500705	0.006353	0.000000	
SECOND_OF_PAIR	363890225	363890225	1.000000	0	362911771	0.997311	53635631666	338460419	50417864607	49524526670	0.000000	0.004289	0.003481	0.000234	150.000000	362873419	0.999894	0	0.500583	0.006482	0.000000	
PAIR	727780450	727780450	1.000000	0	726736469	0.998566	107713475412	680170290	101411574775	99829157781	0.000000	0.003983	0.003222	0.000232	150.000000	725746838	0.998638	0	0.500644	0.006417	0.000000