#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00376/HG00376.cram --algo AlignmentStat 1000G/HG00376/QCmetrics/HG00376.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376630357	376630357	1.000000	0	376532421	0.999740	56004535986	356294929	53171217921	52381006526	0.000000	0.003614	0.003095	0.000224	150.000000	375572696	0.997451	0	0.500641	0.005549	0.000000	
SECOND_OF_PAIR	376630357	376630357	1.000000	0	375625229	0.997331	55593958943	352764882	52584909427	51564355750	0.000000	0.004296	0.003672	0.000230	150.000000	375572696	0.999860	0	0.501153	0.005661	0.000000	
PAIR	753260714	753260714	1.000000	0	752157650	0.998536	111598494929	709059811	105756127348	103945362276	0.000000	0.003954	0.003382	0.000227	150.000000	751145392	0.998654	0	0.500897	0.005605	0.000000