#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00380/HG00380.cram --algo AlignmentStat 1000G/HG00380/QCmetrics/HG00380.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	384247869	384247869	1.000000	0	384175645	0.999812	57122584601	363051979	54179665518	53429941489	0.000000	0.003583	0.003005	0.000231	150.000000	383454716	0.998123	0	0.500496	0.006183	0.000000	
SECOND_OF_PAIR	384247869	384247869	1.000000	0	383498735	0.998050	56805100637	360656734	53754348338	52734909440	0.000000	0.004320	0.003670	0.000233	150.000000	383454716	0.999885	0	0.500707	0.006346	0.000000	
PAIR	768495738	768495738	1.000000	0	767674380	0.998931	113927685238	723708713	107934013856	106164850929	0.000000	0.003950	0.003336	0.000232	150.000000	766909432	0.999004	0	0.500601	0.006264	0.000000