#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00437/HG00437.cram --algo AlignmentStat 1000G/HG00437/QCmetrics/HG00437.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367632094	367632094	1.000000	0	367558219	0.999799	54659405820	347120554	51809627704	51090012147	0.000000	0.003491	0.002939	0.000229	150.000000	366370473	0.996769	0	0.500650	0.005713	0.000001	
SECOND_OF_PAIR	367632094	367632094	1.000000	0	366411145	0.996679	54154022669	343465534	51147650474	50046873164	0.000000	0.004652	0.003990	0.000233	150.000000	366370473	0.999889	0	0.501294	0.005861	0.000000	
PAIR	735264188	735264188	1.000000	0	733969364	0.998239	108813428489	690586088	102957278178	101136885311	0.000000	0.004069	0.003461	0.000231	150.000000	732740946	0.998326	0	0.500972	0.005787	0.000000