#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00475/HG00475.cram --algo AlignmentStat 1000G/HG00475/QCmetrics/HG00475.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375654197	375654197	1.000000	0	375557256	0.999742	55837728715	353151944	52714843106	52063759658	0.000000	0.003679	0.002989	0.000235	150.000000	374398527	0.996915	0	0.500419	0.006784	0.000000	
SECOND_OF_PAIR	375654197	375654197	1.000000	0	374439561	0.996767	55245715943	349801855	52007009110	51111719778	0.000000	0.004503	0.003732	0.000237	150.000000	374398527	0.999890	0	0.500826	0.007222	0.000000	
PAIR	751308394	751308394	1.000000	0	749996817	0.998254	111083444658	702953799	104721852216	103175479436	0.000000	0.004089	0.003358	0.000236	150.000000	748797054	0.998400	0	0.500622	0.007003	0.000000