#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00556/HG00556.cram --algo AlignmentStat 1000G/HG00556/QCmetrics/HG00556.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	327410869	327410869	1.000000	0	327348141	0.999808	48648471658	307339163	45844460285	45236906430	0.000000	0.003584	0.002924	0.000235	150.000000	326654448	0.997881	0	0.500419	0.006199	0.000000	
SECOND_OF_PAIR	327410869	327410869	1.000000	0	326698120	0.997823	48387929918	304953723	45463330484	44658490526	0.000000	0.004169	0.003421	0.000240	150.000000	326654448	0.999866	0	0.501144	0.006347	0.000000	
PAIR	654821738	654821738	1.000000	0	654046261	0.998816	97036401576	612292886	91307790769	89895396956	0.000000	0.003875	0.003172	0.000237	150.000000	653308896	0.998873	0	0.500781	0.006273	0.000000