#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00581/HG00581.cram --algo AlignmentStat 1000G/HG00581/QCmetrics/HG00581.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	349483324	349483324	1.000000	0	349407983	0.999784	51981137596	331675825	49483646029	48779260857	0.000000	0.003494	0.003033	0.000218	150.000000	348677159	0.997908	0	0.500483	0.005702	0.000000	
SECOND_OF_PAIR	349483323	349483323	1.000000	0	348725582	0.997832	51541006731	329089597	48929673474	47910912564	0.000000	0.004674	0.004136	0.000228	150.000000	348677158	0.999861	0	0.500881	0.006395	0.000000	
PAIR	698966647	698966647	1.000000	0	698133565	0.998808	103522144327	660765422	98413319503	96690173421	0.000000	0.004081	0.003581	0.000223	150.000000	697354317	0.998884	0	0.500682	0.006048	0.000000