#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00583/HG00583.cram --algo AlignmentStat 1000G/HG00583/QCmetrics/HG00583.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	364536858	364536858	1.000000	0	364383578	0.999580	54069023656	342813087	51065449428	49641450127	0.000000	0.005558	0.004887	0.000225	150.000000	363393214	0.997282	0	0.500450	0.006093	0.000000	
SECOND_OF_PAIR	364536858	364536858	1.000000	0	363473218	0.997082	53758238387	339964611	50628353182	49171389633	0.000000	0.005726	0.004974	0.000232	150.000000	363393214	0.999780	0	0.500788	0.006201	0.000000	
PAIR	729073716	729073716	1.000000	0	727856796	0.998331	107827262043	682777698	101693802610	98812839760	0.000000	0.005641	0.004930	0.000228	150.000000	726786428	0.998529	0	0.500619	0.006147	0.000000