#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00593/HG00593.cram --algo AlignmentStat 1000G/HG00593/QCmetrics/HG00593.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379071103	379071103	1.000000	0	378957044	0.999699	56310755701	357619237	53339049091	52380560794	0.000000	0.004160	0.003609	0.000222	150.000000	377994141	0.997459	0	0.500539	0.006466	0.000000	
SECOND_OF_PAIR	379071103	379071103	1.000000	0	378053054	0.997314	55906691701	354416843	52789240437	51701141625	0.000000	0.004605	0.003953	0.000228	150.000000	377994141	0.999844	0	0.501035	0.006708	0.000000	
PAIR	758142206	758142206	1.000000	0	757010098	0.998507	112217447402	712036080	106128289528	104081702419	0.000000	0.004382	0.003780	0.000225	150.000000	755988282	0.998650	0	0.500787	0.006587	0.000000