#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00595/HG00595.cram --algo AlignmentStat 1000G/HG00595/QCmetrics/HG00595.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	339835498	339835498	1.000000	0	339772282	0.999814	50506346868	319179583	47610609651	46983297418	0.000000	0.003596	0.002939	0.000231	150.000000	339175030	0.998242	0	0.500288	0.006055	0.000000	
SECOND_OF_PAIR	339835498	339835498	1.000000	0	339219999	0.998189	50270801992	317066872	47274316701	46537210565	0.000000	0.003905	0.003180	0.000234	150.000000	339175030	0.999867	0	0.500760	0.006194	0.000000	
PAIR	679670996	679670996	1.000000	0	678992281	0.999001	100777148860	636246455	94884926352	93520507983	0.000000	0.003750	0.003059	0.000232	150.000000	678350060	0.999054	0	0.500524	0.006124	0.000000