#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00628/HG00628.cram --algo AlignmentStat 1000G/HG00628/QCmetrics/HG00628.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391969207	391969207	1.000000	0	391871565	0.999751	58264577635	368219037	54936384171	54101312335	0.000000	0.003847	0.003237	0.000229	150.000000	390925197	0.997585	0	0.500574	0.006666	0.000000	
SECOND_OF_PAIR	391969207	391969207	1.000000	0	390976751	0.997468	57873817795	364870657	54387005836	53425919012	0.000000	0.004277	0.003570	0.000235	150.000000	390925197	0.999868	0	0.500941	0.006856	0.000000	
PAIR	783938414	783938414	1.000000	0	782848316	0.998609	116138395430	733089694	109323390007	107527231347	0.000000	0.004062	0.003403	0.000232	150.000000	781850394	0.998725	0	0.500758	0.006761	0.000000