#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00631/HG00631.cram --algo AlignmentStat 1000G/HG00631/QCmetrics/HG00631.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	349516452	349516452	1.000000	0	349430858	0.999755	51972810021	329090493	49102378385	48370427119	0.000000	0.003746	0.003168	0.000220	150.000000	348661870	0.997799	0	0.500616	0.005960	0.000000	
SECOND_OF_PAIR	349516452	349516452	1.000000	0	348709110	0.997690	51653468019	326246157	48642457211	47849101435	0.000000	0.004056	0.003386	0.000226	150.000000	348661870	0.999865	0	0.500759	0.006073	0.000000	
PAIR	699032904	699032904	1.000000	0	698139968	0.998723	103626278040	655336650	97744835596	96219528554	0.000000	0.003901	0.003276	0.000223	150.000000	697323740	0.998831	0	0.500688	0.006016	0.000000