#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00650/HG00650.cram --algo AlignmentStat 1000G/HG00650/QCmetrics/HG00650.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	423189012	423189012	1.000000	0	423107483	0.999807	62900226099	398147956	59395646320	58634295907	0.000000	0.003536	0.002917	0.000232	150.000000	422279464	0.998043	0	0.500436	0.006544	0.000000	
SECOND_OF_PAIR	423189012	423189012	1.000000	0	422333309	0.997978	62560176684	395052319	58899413220	57952674855	0.000000	0.003958	0.003254	0.000237	150.000000	422279464	0.999873	0	0.500942	0.006693	0.000000	
PAIR	846378024	846378024	1.000000	0	845440792	0.998893	125460402783	793200275	118295059540	116586970762	0.000000	0.003746	0.003085	0.000234	150.000000	844558928	0.998957	0	0.500689	0.006618	0.000000