#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00683/HG00683.cram --algo AlignmentStat 1000G/HG00683/QCmetrics/HG00683.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356331449	356331449	1.000000	0	356197685	0.999625	52852770489	334053756	49771566222	48470965882	0.000000	0.005538	0.004796	0.000230	150.000000	355146125	0.997048	0	0.500485	0.006146	0.000000	
SECOND_OF_PAIR	356331449	356331449	1.000000	0	355214456	0.996865	52489786490	331019746	49275481388	47806942454	0.000000	0.006102	0.005274	0.000236	150.000000	355146125	0.999808	0	0.500931	0.006211	0.000000	
PAIR	712662898	712662898	1.000000	0	711412141	0.998245	105342556979	665073502	99047047610	96277908336	0.000000	0.005819	0.005034	0.000233	150.000000	710292250	0.998426	0	0.500708	0.006178	0.000000