#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00707/HG00707.cram --algo AlignmentStat 1000G/HG00707/QCmetrics/HG00707.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363069883	363069883	1.000000	0	362999372	0.999806	53939291728	339757919	50675333091	49906192583	0.000000	0.003833	0.003144	0.000235	150.000000	362241912	0.997913	0	0.500478	0.007347	0.000000	
SECOND_OF_PAIR	363069883	363069883	1.000000	0	362286597	0.997843	53504597578	337082428	50124105687	49091641913	0.000000	0.004690	0.003924	0.000240	150.000000	362241912	0.999877	0	0.500798	0.007748	0.000000	
PAIR	726139766	726139766	1.000000	0	725285969	0.998824	107443889306	676840347	100799438778	98997834496	0.000000	0.004260	0.003532	0.000238	150.000000	724483824	0.998894	0	0.500638	0.007547	0.000000