#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00708/HG00708.cram --algo AlignmentStat 1000G/HG00708/QCmetrics/HG00708.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369486271	369486271	1.000000	0	369418747	0.999817	54954297232	348702835	52052881409	51431058387	0.000000	0.003327	0.002772	0.000232	150.000000	368193677	0.996684	0	0.500509	0.006611	0.000000	
SECOND_OF_PAIR	369486271	369486271	1.000000	0	368230690	0.996602	54357253505	344747264	51282492962	50315137439	0.000000	0.005519	0.004857	0.000237	150.000000	368193677	0.999899	0	0.501449	0.007087	0.000000	
PAIR	738972542	738972542	1.000000	0	737649437	0.998210	109311550737	693450099	103335374371	101746195826	0.000000	0.004417	0.003807	0.000235	150.000000	736387354	0.998289	0	0.500978	0.006848	0.000000