#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00732/HG00732.cram --algo AlignmentStat 1000G/HG00732/QCmetrics/HG00732.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	363700503	363700503	1.000000	0	363589877	0.999696	54022075705	341950027	51034487754	50365438842	0.000000	0.003720	0.003056	0.000241	150.000000	362302659	0.996460	0	0.500712	0.006683	0.000000	
SECOND_OF_PAIR	363700503	363700503	1.000000	0	362342979	0.996267	53401530258	338619933	50299319049	49191235354	0.000000	0.005171	0.004417	0.000241	150.000000	362302659	0.999889	0	0.500976	0.007167	0.000000	
PAIR	727401006	727401006	1.000000	0	725932856	0.997982	107423605963	680569960	101333806803	99556674196	0.000000	0.004442	0.003732	0.000241	150.000000	724605318	0.998171	0	0.500844	0.006925	0.000000