#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00734/HG00734.cram --algo AlignmentStat 1000G/HG00734/QCmetrics/HG00734.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380418171	380418171	1.000000	0	380312497	0.999722	56488727552	359758804	53632532118	52694914613	0.000000	0.004040	0.003499	0.000227	150.000000	379261453	0.997236	0	0.500636	0.006117	0.000000	
SECOND_OF_PAIR	380418171	380418171	1.000000	0	379320724	0.997115	56117765507	356215579	53084590442	52048997174	0.000000	0.004412	0.003769	0.000234	150.000000	379261453	0.999844	0	0.501328	0.006199	0.000000	
PAIR	760836342	760836342	1.000000	0	759633221	0.998419	112606493059	715974383	106717122560	104743911787	0.000000	0.004226	0.003633	0.000231	150.000000	758522906	0.998538	0	0.500982	0.006158	0.000000