#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00740/HG00740.cram --algo AlignmentStat 1000G/HG00740/QCmetrics/HG00740.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370661888	370661888	1.000000	0	370604645	0.999846	55114905486	349566630	52183696833	51578242728	0.000000	0.003376	0.002784	0.000243	150.000000	369609168	0.997314	0	0.500622	0.006811	0.000000	
SECOND_OF_PAIR	370661888	370661888	1.000000	0	369642595	0.997250	54606627489	346600635	51567428227	50668210601	0.000000	0.005420	0.004755	0.000244	150.000000	369609168	0.999910	0	0.500577	0.007256	0.000000	
PAIR	741323776	741323776	1.000000	0	740247240	0.998548	109721532975	696167265	103751125060	102246453329	0.000000	0.004393	0.003763	0.000243	150.000000	739218336	0.998610	0	0.500600	0.007033	0.000000