#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00844/HG00844.cram --algo AlignmentStat 1000G/HG00844/QCmetrics/HG00844.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	351958969	351958969	1.000000	0	351846573	0.999681	52238710744	329875860	49177161955	48205900323	0.000000	0.004656	0.003958	0.000227	150.000000	350996392	0.997584	0	0.500434	0.007022	0.000000	
SECOND_OF_PAIR	351958969	351958969	1.000000	0	351056102	0.997435	51909391637	327269805	48737775299	47695925430	0.000000	0.004934	0.004154	0.000232	150.000000	350996392	0.999830	0	0.500722	0.007240	0.000000	
PAIR	703917938	703917938	1.000000	0	702902675	0.998558	104148102381	657145665	97914937254	95901825753	0.000000	0.004794	0.004055	0.000229	150.000000	701992784	0.998706	0	0.500578	0.007131	0.000000