#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00867/HG00867.cram --algo AlignmentStat 1000G/HG00867/QCmetrics/HG00867.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379872961	379872961	1.000000	0	379761968	0.999708	56414680674	358184513	53419912188	52515228592	0.000000	0.004096	0.003527	0.000225	150.000000	378736040	0.997298	0	0.500669	0.006241	0.000000	
SECOND_OF_PAIR	379872961	379872961	1.000000	0	378792274	0.997155	55983832977	354885801	52841916034	51695050662	0.000000	0.004850	0.004171	0.000229	150.000000	378736040	0.999852	0	0.501069	0.006447	0.000000	
PAIR	759745922	759745922	1.000000	0	758554242	0.998431	112398513651	713070314	106261828222	104210279254	0.000000	0.004472	0.003847	0.000227	150.000000	757472080	0.998573	0	0.500869	0.006344	0.000000