#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00879/HG00879.cram --algo AlignmentStat 1000G/HG00879/QCmetrics/HG00879.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	339501107	339501107	1.000000	0	339427415	0.999783	50486488038	321837499	48015011724	47325239720	0.000000	0.003557	0.003077	0.000225	150.000000	338729037	0.997942	0	0.500455	0.006208	0.000000	
SECOND_OF_PAIR	339501107	339501107	1.000000	0	338776049	0.997864	50064835802	319356270	47485886647	46523414397	0.000000	0.004633	0.004083	0.000234	150.000000	338729037	0.999861	0	0.500800	0.006899	0.000000	
PAIR	679002214	679002214	1.000000	0	678203464	0.998824	100551323840	641193769	95500898371	93848654117	0.000000	0.004093	0.003577	0.000229	150.000000	677458074	0.998901	0	0.500627	0.006553	0.000000