#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG00982/HG00982.cram --algo AlignmentStat 1000G/HG00982/QCmetrics/HG00982.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	450364917	450364917	1.000000	0	450112504	0.999440	66802447897	422135996	62881048504	61688190355	0.000000	0.004807	0.004115	0.000229	150.000000	449014623	0.997561	0	0.500431	0.007064	0.000000	
SECOND_OF_PAIR	450364917	450364917	1.000000	0	449119702	0.997235	66502577270	418720265	62415964512	61276793243	0.000000	0.004617	0.003844	0.000237	150.000000	449014623	0.999766	0	0.500668	0.007159	0.000000	
PAIR	900729834	900729834	1.000000	0	899232206	0.998337	133305025167	840856261	125297013016	122964983598	0.000000	0.004712	0.003980	0.000233	150.000000	898029246	0.998662	0	0.500549	0.007112	0.000000