#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01029/HG01029.cram --algo AlignmentStat 1000G/HG01029/QCmetrics/HG01029.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	488352230	488352230	1.000000	0	488218002	0.999725	72588416307	461547917	68868958561	67863047962	0.000000	0.003730	0.003130	0.000229	150.000000	487095669	0.997701	0	0.500489	0.006410	0.000000	
SECOND_OF_PAIR	488352230	488352230	1.000000	0	487156414	0.997551	72138908631	457892108	68246983428	66888398413	0.000000	0.004498	0.003803	0.000233	150.000000	487095669	0.999875	0	0.501145	0.006554	0.000000	
PAIR	976704460	976704460	1.000000	0	975374416	0.998638	144727324938	919440025	137115941989	134751446375	0.000000	0.004113	0.003465	0.000231	150.000000	974191338	0.998787	0	0.500817	0.006482	0.000000