#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01031/HG01031.cram --algo AlignmentStat 1000G/HG01031/QCmetrics/HG01031.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376315147	376315147	1.000000	0	376147595	0.999555	55837144346	352834253	52577216609	51403630968	0.000000	0.004859	0.004183	0.000232	150.000000	375129875	0.997294	0	0.500389	0.006141	0.000000	
SECOND_OF_PAIR	376315147	376315147	1.000000	0	375209040	0.997061	55523194081	350004858	52143694572	50940938865	0.000000	0.004957	0.004212	0.000238	150.000000	375129875	0.999789	0	0.500742	0.006251	0.000000	
PAIR	752630294	752630294	1.000000	0	751356635	0.998308	111360338427	702839111	104720911181	102344569833	0.000000	0.004908	0.004197	0.000235	150.000000	750259750	0.998540	0	0.500565	0.006196	0.000000